| Test |
Duration |
Result |
| createNonBasicFuncotations[0](9002502, 9002502) |
0.102s |
passed |
| createNonBasicFuncotations[100](8959519, 8959519) |
0.078s |
passed |
| createNonBasicFuncotations[101](8959510, 8959510) |
0.077s |
passed |
| createNonBasicFuncotations[10](8996322, 8996322) |
0.080s |
passed |
| createNonBasicFuncotations[11](8995955, 8995955) |
0.078s |
passed |
| createNonBasicFuncotations[12](8995636, 8995636) |
0.079s |
passed |
| createNonBasicFuncotations[13](8994418, 8994418) |
0.095s |
passed |
| createNonBasicFuncotations[14](8994143, 8994143) |
0.079s |
passed |
| createNonBasicFuncotations[15](8993374, 8993374) |
0.081s |
passed |
| createNonBasicFuncotations[16](8993008, 8993008) |
0.078s |
passed |
| createNonBasicFuncotations[17](8987211, 8987211) |
0.079s |
passed |
| createNonBasicFuncotations[18](8987046, 8987046) |
0.079s |
passed |
| createNonBasicFuncotations[19](8982158, 8982158) |
0.078s |
passed |
| createNonBasicFuncotations[1](9002154, 9002154) |
0.088s |
passed |
| createNonBasicFuncotations[20](8973586, 8973586) |
0.077s |
passed |
| createNonBasicFuncotations[21](9006643, 9006643) |
0.078s |
passed |
| createNonBasicFuncotations[22](9006345, 9006345) |
0.087s |
passed |
| createNonBasicFuncotations[23](9005560, 9005560) |
0.079s |
passed |
| createNonBasicFuncotations[24](9005195, 9005195) |
0.078s |
passed |
| createNonBasicFuncotations[25](9004870, 9004870) |
0.087s |
passed |
| createNonBasicFuncotations[26](9003567, 9003567) |
0.078s |
passed |
| createNonBasicFuncotations[27](9003294, 9003294) |
0.077s |
passed |
| createNonBasicFuncotations[28](9002502, 9002502) |
0.076s |
passed |
| createNonBasicFuncotations[29](9002154, 9002154) |
0.077s |
passed |
| createNonBasicFuncotations[2](9001832, 9001832) |
0.086s |
passed |
| createNonBasicFuncotations[30](9001832, 9001832) |
0.087s |
passed |
| createNonBasicFuncotations[31](9000443, 9000443) |
0.079s |
passed |
| createNonBasicFuncotations[32](9000148, 9000148) |
0.079s |
passed |
| createNonBasicFuncotations[33](8999393, 8999393) |
0.077s |
passed |
| createNonBasicFuncotations[34](8999026, 8999026) |
0.079s |
passed |
| createNonBasicFuncotations[35](8998699, 8998699) |
0.077s |
passed |
| createNonBasicFuncotations[36](8997413, 8997413) |
0.078s |
passed |
| createNonBasicFuncotations[37](8997119, 8997119) |
0.077s |
passed |
| createNonBasicFuncotations[38](8996322, 8996322) |
0.090s |
passed |
| createNonBasicFuncotations[39](8995955, 8995955) |
0.078s |
passed |
| createNonBasicFuncotations[3](9000443, 9000443) |
0.086s |
passed |
| createNonBasicFuncotations[40](8994418, 8994418) |
0.078s |
passed |
| createNonBasicFuncotations[41](8994143, 8994143) |
0.078s |
passed |
| createNonBasicFuncotations[42](8993374, 8993374) |
0.077s |
passed |
| createNonBasicFuncotations[43](8993008, 8993008) |
0.078s |
passed |
| createNonBasicFuncotations[44](8987211, 8987211) |
0.080s |
passed |
| createNonBasicFuncotations[45](8987046, 8987046) |
0.076s |
passed |
| createNonBasicFuncotations[46](8982158, 8982158) |
0.093s |
passed |
| createNonBasicFuncotations[47](8979218, 8979218) |
0.079s |
passed |
| createNonBasicFuncotations[48](8977641, 8977641) |
0.077s |
passed |
| createNonBasicFuncotations[49](8976740, 8976740) |
0.079s |
passed |
| createNonBasicFuncotations[4](9000148, 9000148) |
0.080s |
passed |
| createNonBasicFuncotations[50](8976582, 8976582) |
0.078s |
passed |
| createNonBasicFuncotations[51](8976261, 8976261) |
0.091s |
passed |
| createNonBasicFuncotations[52](8973973, 8973973) |
0.079s |
passed |
| createNonBasicFuncotations[53](8973550, 8973550) |
0.077s |
passed |
| createNonBasicFuncotations[54](8971677, 8971677) |
0.093s |
passed |
| createNonBasicFuncotations[55](8969263, 8969263) |
0.078s |
passed |
| createNonBasicFuncotations[56](8968881, 8968881) |
0.078s |
passed |
| createNonBasicFuncotations[57](8966750, 8966750) |
0.078s |
passed |
| createNonBasicFuncotations[58](9006643, 9006643) |
0.078s |
passed |
| createNonBasicFuncotations[59](9006345, 9006345) |
0.077s |
passed |
| createNonBasicFuncotations[5](8999393, 8999393) |
0.097s |
passed |
| createNonBasicFuncotations[60](9005560, 9005560) |
0.077s |
passed |
| createNonBasicFuncotations[61](9005195, 9005195) |
0.078s |
passed |
| createNonBasicFuncotations[62](9004870, 9004870) |
0.077s |
passed |
| createNonBasicFuncotations[63](9003567, 9003567) |
0.089s |
passed |
| createNonBasicFuncotations[64](9003294, 9003294) |
0.083s |
passed |
| createNonBasicFuncotations[65](9002502, 9002502) |
0.077s |
passed |
| createNonBasicFuncotations[66](9002154, 9002154) |
0.080s |
passed |
| createNonBasicFuncotations[67](9001832, 9001832) |
0.081s |
passed |
| createNonBasicFuncotations[68](9000443, 9000443) |
0.077s |
passed |
| createNonBasicFuncotations[69](9000148, 9000148) |
0.077s |
passed |
| createNonBasicFuncotations[6](8999026, 8999026) |
0.087s |
passed |
| createNonBasicFuncotations[70](8999393, 8999393) |
0.076s |
passed |
| createNonBasicFuncotations[71](8999026, 8999026) |
0.085s |
passed |
| createNonBasicFuncotations[72](8998699, 8998699) |
0.077s |
passed |
| createNonBasicFuncotations[73](8997413, 8997413) |
0.076s |
passed |
| createNonBasicFuncotations[74](8997119, 8997119) |
0.076s |
passed |
| createNonBasicFuncotations[75](8996322, 8996322) |
0.078s |
passed |
| createNonBasicFuncotations[76](8995955, 8995955) |
0.085s |
passed |
| createNonBasicFuncotations[77](8995636, 8995636) |
0.079s |
passed |
| createNonBasicFuncotations[78](8994418, 8994418) |
0.077s |
passed |
| createNonBasicFuncotations[79](8994143, 8994143) |
0.087s |
passed |
| createNonBasicFuncotations[7](8998699, 8998699) |
0.080s |
passed |
| createNonBasicFuncotations[80](8993374, 8993374) |
0.077s |
passed |
| createNonBasicFuncotations[81](8993008, 8993008) |
0.078s |
passed |
| createNonBasicFuncotations[82](8987211, 8987211) |
0.081s |
passed |
| createNonBasicFuncotations[83](8987046, 8987046) |
0.078s |
passed |
| createNonBasicFuncotations[84](8982158, 8982158) |
0.076s |
passed |
| createNonBasicFuncotations[85](8979218, 8979218) |
0.078s |
passed |
| createNonBasicFuncotations[86](8976740, 8976740) |
0.078s |
passed |
| createNonBasicFuncotations[87](8976582, 8976582) |
0.088s |
passed |
| createNonBasicFuncotations[88](8976261, 8976261) |
0.077s |
passed |
| createNonBasicFuncotations[89](8973973, 8973973) |
0.079s |
passed |
| createNonBasicFuncotations[8](8997413, 8997413) |
0.079s |
passed |
| createNonBasicFuncotations[90](8973550, 8973550) |
0.079s |
passed |
| createNonBasicFuncotations[91](8971677, 8971677) |
0.079s |
passed |
| createNonBasicFuncotations[92](8969277, 8969277) |
0.078s |
passed |
| createNonBasicFuncotations[93](8968881, 8968881) |
0.076s |
passed |
| createNonBasicFuncotations[94](8966651, 8966651) |
0.077s |
passed |
| createNonBasicFuncotations[95](8962355, 8962355) |
0.078s |
passed |
| createNonBasicFuncotations[96](8961953, 8961953) |
0.084s |
passed |
| createNonBasicFuncotations[97](8959612, 8959612) |
0.078s |
passed |
| createNonBasicFuncotations[98](9092019, 9092019) |
0.077s |
passed |
| createNonBasicFuncotations[99](9092050, 9092050) |
0.077s |
passed |
| createNonBasicFuncotations[9](8997119, 8997119) |
0.080s |
passed |
| testCalculateGcContent[0](A*, G, org.broadinstitute.hellbender.engine.ReferenceContext@202ed88d, 1, 0.0) |
0s |
passed |
| testCalculateGcContent[10](AAAAA*, GGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@deb0c0e, 1, 0.0) |
0s |
passed |
| testCalculateGcContent[11](AAAAA*, GGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@6942ff10, 9, 0.2857142857142857) |
0s |
passed |
| testCalculateGcContent[12](AAAAA*, GGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@1c33d539, 10, 0.3333333333333333) |
0s |
passed |
| testCalculateGcContent[13](GCCCCC*, AGGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@2c3f47ba, 1, 1) |
0s |
passed |
| testCalculateGcContent[14](GCCCCC*, AGGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@e316971, 9, 0.6666666666666666) |
0s |
passed |
| testCalculateGcContent[15](GCCCCC*, AGGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@56540a58, 10, 0.625) |
0.001s |
passed |
| testCalculateGcContent[16](TGGGGG*, AAAAAA, org.broadinstitute.hellbender.engine.ReferenceContext@6230a15a, 1, 0.75) |
0s |
passed |
| testCalculateGcContent[17](TGGGGG*, AAAAAA, org.broadinstitute.hellbender.engine.ReferenceContext@1bff4cb9, 9, 0.4166666666666667) |
0s |
passed |
| testCalculateGcContent[18](TGGGGG*, AAAAAA, org.broadinstitute.hellbender.engine.ReferenceContext@6b0f50d8, 10, 0.4230769230769231) |
0s |
passed |
| testCalculateGcContent[19](TGGGGG*, AAAAAA, org.broadinstitute.hellbender.engine.ReferenceContext@57cfd353, 50, 0.5) |
0s |
passed |
| testCalculateGcContent[1](A*, G, org.broadinstitute.hellbender.engine.ReferenceContext@4c3c1963, 9, 0.0) |
0s |
passed |
| testCalculateGcContent[20](A*, AG, org.broadinstitute.hellbender.engine.ReferenceContext@5a4a8a33, 1, 0.0) |
0s |
passed |
| testCalculateGcContent[21](A*, AGG, org.broadinstitute.hellbender.engine.ReferenceContext@63cf6497, 9, 0.0) |
0s |
passed |
| testCalculateGcContent[22](A*, AGGG, org.broadinstitute.hellbender.engine.ReferenceContext@3207e6de, 10, 0.09090909090909091) |
0s |
passed |
| testCalculateGcContent[23](C*, CG, org.broadinstitute.hellbender.engine.ReferenceContext@7b88dd58, 1, 1) |
0s |
passed |
| testCalculateGcContent[24](C*, CGG, org.broadinstitute.hellbender.engine.ReferenceContext@5dce3e82, 9, 1) |
0s |
passed |
| testCalculateGcContent[25](C*, CGGG, org.broadinstitute.hellbender.engine.ReferenceContext@5ce59833, 10, 1) |
0s |
passed |
| testCalculateGcContent[26](T*, TG, org.broadinstitute.hellbender.engine.ReferenceContext@30dbcffd, 1, 0.5) |
0s |
passed |
| testCalculateGcContent[27](T*, TGG, org.broadinstitute.hellbender.engine.ReferenceContext@76d9fe26, 9, 0.5) |
0s |
passed |
| testCalculateGcContent[28](T*, TGGG, org.broadinstitute.hellbender.engine.ReferenceContext@6a6a60f3, 10, 0.5) |
0s |
passed |
| testCalculateGcContent[29](T*, TGGGG, org.broadinstitute.hellbender.engine.ReferenceContext@3bc82aa3, 49, 0.5) |
0s |
passed |
| testCalculateGcContent[2](A*, G, org.broadinstitute.hellbender.engine.ReferenceContext@188caeaf, 10, 0.09090909090909091) |
0s |
passed |
| testCalculateGcContent[30](AAAAA*, A, org.broadinstitute.hellbender.engine.ReferenceContext@1220969, 10, 0.3333333333333333) |
0s |
passed |
| testCalculateGcContent[31](GCCCCC*, G, org.broadinstitute.hellbender.engine.ReferenceContext@37b04a2a, 10, 0.6666666666666666) |
0s |
passed |
| testCalculateGcContent[32](TGGGGG*, T, org.broadinstitute.hellbender.engine.ReferenceContext@2ae92511, 10, 0.4) |
0s |
passed |
| testCalculateGcContent[33](TG*, T, org.broadinstitute.hellbender.engine.ReferenceContext@6df8131c, 10, 0.47619047619047616) |
0.001s |
passed |
| testCalculateGcContent[3](C*, G, org.broadinstitute.hellbender.engine.ReferenceContext@4b05a9b1, 1, 1) |
0s |
passed |
| testCalculateGcContent[4](C*, G, org.broadinstitute.hellbender.engine.ReferenceContext@7f129873, 9, 1) |
0s |
passed |
| testCalculateGcContent[5](C*, G, org.broadinstitute.hellbender.engine.ReferenceContext@ceeb762, 10, 0.9090909090909091) |
0s |
passed |
| testCalculateGcContent[6](T*, G, org.broadinstitute.hellbender.engine.ReferenceContext@504f2bcd, 1, 0.3333333333333333) |
0s |
passed |
| testCalculateGcContent[7](T*, G, org.broadinstitute.hellbender.engine.ReferenceContext@45d28ab7, 9, 0.47368421052631576) |
0s |
passed |
| testCalculateGcContent[8](T*, G, org.broadinstitute.hellbender.engine.ReferenceContext@78652c15, 10, 0.5238095238095238) |
0.001s |
passed |
| testCalculateGcContent[9](T*, G, org.broadinstitute.hellbender.engine.ReferenceContext@66fd9613, 50, 0.5) |
0s |
passed |
| testCreateDefaultFuncotationsOnProblemVariant[0]([VC /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta @ chr3:178921515-178921517 Q. of type=MNP alleles=[GCA*, TTG] attr={} GT=[] filters=, TTG, chr3 ENSEMBL gene 178919515 178923517 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TEST_GENE"; level 3;
chr3 ENSEMBL transcript 178920515 178922517 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;, org.broadinstitute.hellbender.engine.ReferenceContext@5f84e764, chr3 ENSEMBL transcript 178920515 178922517 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;, VERSION, TEST_GENCODE_NAME, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@aaba41eb) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[0](MUC16, FIVE_PRIME_FLANK, chr19, 9092019, 9092019, C, A, 3000, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[10](MUC16, THREE_PRIME_FLANK, chr19, 8959510, 8959510, A, T, 9, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[11](MUC16, THREE_PRIME_FLANK, chr19, 8959515, 8959515, C, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[12](null, IGR, chr19, 8959519, 8959519, G, A, 0, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[13](null, IGR, chr19, 8959519, 8959519, G, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[14](null, IGR, chr19, 8959510, 8959510, A, T, 0, 9, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[15](MUC16, THREE_PRIME_UTR, chr19, 8959520, 8959520, T, A, 10, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[16](MUC16, FIVE_PRIME_FLANK, chr19, 9092019, 9092021, CTA, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[17](MUC16, FIVE_PRIME_FLANK, chr19, 9092022, 9092024, ATT, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[18](MUC16, FIVE_PRIME_FLANK, chr19, 9092026, 9092028, AGA, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[19](MUC16, FIVE_PRIME_FLANK, chr19, 9092027, 9092029, GAA, G, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[1](MUC16, FIVE_PRIME_FLANK, chr19, 9092028, 9092028, A, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.006s |
passed |
| testCreateFuncotationsWithFlanks[20](MUC16, FIVE_PRIME_FLANK, chr19, 9092028, 9092030, AAG, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[21](MUC16, FIVE_PRIME_UTR, chr19, 9092015, 9092017, GCT, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[22](MUC16, FIVE_PRIME_UTR, chr19, 9092016, 9092018, CTT, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[23](MUC16, COULD_NOT_DETERMINE, chr19, 9092017, 9092019, TTC, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.008s |
passed |
| testCreateFuncotationsWithFlanks[24](MUC16, COULD_NOT_DETERMINE, chr19, 9092018, 9092020, TCT, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[25](null, IGR, chr19, 9092029, 9092031, AGA, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[26](null, IGR, chr19, 9092030, 9092032, GAC, G, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[27](MUC16, THREE_PRIME_FLANK, chr19, 8959517, 8959519, GTG, G, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[28](MUC16, THREE_PRIME_FLANK, chr19, 8959514, 8959516, ACT, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[29](MUC16, THREE_PRIME_FLANK, chr19, 8959510, 8959512, AGA, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[2](MUC16, FIVE_PRIME_FLANK, chr19, 9092028, 9092028, A, T, 10, 9, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[30](MUC16, THREE_PRIME_FLANK, chr19, 8959509, 8959511, CAG, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[31](MUC16, THREE_PRIME_FLANK, chr19, 8959508, 8959510, TCA, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[32](MUC16, THREE_PRIME_UTR, chr19, 8959521, 8959523, CCG, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[33](MUC16, THREE_PRIME_UTR, chr19, 8959520, 8959522, TCC, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[34](MUC16, COULD_NOT_DETERMINE, chr19, 8959519, 8959521, GTC, G, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[35](MUC16, COULD_NOT_DETERMINE, chr19, 8959518, 8959520, TGT, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[36](null, IGR, chr19, 8959507, 8959509, CTC, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[37](null, IGR, chr19, 8959506, 8959508, GCT, G, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[38](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866310, 178866310, C, A, 3000, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[39](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866301, 178866301, C, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[3](MUC16, FIVE_PRIME_FLANK, chr19, 9092023, 9092023, T, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[40](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866301, 178866301, C, A, 10, 9, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[41](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866306, 178866306, T, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[42](null, IGR, chr3, 178866310, 178866310, C, A, 0, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[43](null, IGR, chr3, 178866310, 178866310, C, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[44](null, IGR, chr3, 178866301, 178866301, C, A, 9, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[45](PIK3CA, FIVE_PRIME_UTR, chr3, 178866311, 178866311, T, A, 10, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[46](PIK3CA, THREE_PRIME_FLANK, chr3, 178957882, 178957882, C, A, 0, 100, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[47](PIK3CA, THREE_PRIME_FLANK, chr3, 178957891, 178957891, T, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[48](PIK3CA, THREE_PRIME_FLANK, chr3, 178957891, 178957891, T, A, 9, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[49](PIK3CA, THREE_PRIME_FLANK, chr3, 178957886, 178957886, T, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[4](null, IGR, chr19, 9092019, 9092019, C, A, 0, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[50](null, IGR, chr3, 178957882, 178957882, C, A, 0, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[51](null, IGR, chr3, 178957882, 178957882, C, A, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[52](null, IGR, chr3, 178957891, 178957891, T, A, 0, 9, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[53](PIK3CA, THREE_PRIME_UTR, chr3, 178957881, 178957881, A, C, 10, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[54](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866308, 178866310, TCC, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[55](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866305, 178866307, CTC, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[56](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866301, 178866303, CCC, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[57](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866300, 178866302, GCC, G, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[58](PIK3CA, FIVE_PRIME_FLANK, chr3, 178866299, 178866301, CGC, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[59](PIK3CA, FIVE_PRIME_UTR, chr3, 178866312, 178866314, CTC, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[5](null, IGR, chr19, 9092019, 9092019, C, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotationsWithFlanks[60](PIK3CA, FIVE_PRIME_UTR, chr3, 178866311, 178866313, TCT, T, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[61](PIK3CA, COULD_NOT_DETERMINE, chr3, 178866310, 178866312, CTC, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[62](PIK3CA, COULD_NOT_DETERMINE, chr3, 178866309, 178866311, CCT, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[63](null, IGR, chr3, 178866298, 178866300, CCG, C, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[64](null, IGR, chr3, 178866297, 178866299, GCC, G, 10, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[65](PIK3CA, THREE_PRIME_FLANK, chr3, 178957882, 178957884, CTT, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[66](PIK3CA, THREE_PRIME_FLANK, chr3, 178957885, 178957887, TTT, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[67](PIK3CA, THREE_PRIME_FLANK, chr3, 178957889, 178957891, TGT, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[68](PIK3CA, THREE_PRIME_FLANK, chr3, 178957890, 178957892, GTC, G, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[69](PIK3CA, THREE_PRIME_FLANK, chr3, 178957891, 178957893, TCC, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[6](null, IGR, chr19, 9092028, 9092028, A, T, 9, 0, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[70](PIK3CA, THREE_PRIME_UTR, chr3, 178957878, 178957880, ATT, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[71](PIK3CA, THREE_PRIME_UTR, chr3, 178957879, 178957881, TTA, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[72](PIK3CA, COULD_NOT_DETERMINE, chr3, 178957880, 178957882, TAC, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[73](PIK3CA, COULD_NOT_DETERMINE, chr3, 178957881, 178957883, ACT, A, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[74](null, IGR, chr3, 178957892, 178957894, CCA, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.002s |
passed |
| testCreateFuncotationsWithFlanks[75](null, IGR, chr3, 178957893, 178957895, CAA, C, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_pik3ca/hg19/gencode.v19.PIK3CA_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77) |
0.001s |
passed |
| testCreateFuncotationsWithFlanks[7](MUC16, FIVE_PRIME_UTR, chr19, 9092018, 9092018, T, A, 10, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.005s |
passed |
| testCreateFuncotationsWithFlanks[8](MUC16, THREE_PRIME_FLANK, chr19, 8959519, 8959519, G, A, 0, 100, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.004s |
passed |
| testCreateFuncotationsWithFlanks[9](MUC16, THREE_PRIME_FLANK, chr19, 8959510, 8959510, A, T, 0, 10, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16.gtf, /gatkCloneMountPoint/src/test/resources/large/funcotator/pik3ca_muc16_all_transcripts_ds/gencode_muc16/hg19/gencode.v19.MUC16_transcript.fasta, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192) |
0.003s |
passed |
| testCreateFuncotations[0](MUC16, 19, 9091811, 9091811, SILENT, SNP, G, A, g.chr19:9091811G>A, -, c.4C>T, c.(4-6)Ctg>Ttg, p.L2L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.096s |
passed |
| testCreateFuncotations[1000](MUC16, 19, 9077276, 9077276, SILENT, SNP, G, A, g.chr19:9077276G>A, -, c.10170C>T, c.(10168-10170)acC>acT, p.T3390T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1001](MUC16, 19, 9087822, 9087822, SILENT, SNP, C, T, g.chr19:9087822C>T, -, c.3993G>A, c.(3991-3993)aaG>aaA, p.K1331K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1002](MUC16, 19, 9088636, 9088636, MISSENSE, SNP, C, T, g.chr19:9088636C>T, -, c.3179G>A, c.(3178-3180)gGa>gAa, p.G1060E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1003](MUC16, 19, 9090360, 9090360, SILENT, SNP, G, T, g.chr19:9090360G>T, -, c.1455C>A, c.(1453-1455)acC>acA, p.T485T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1004](MUC16, 19, 9065699, 9065699, MISSENSE, SNP, C, A, g.chr19:9065699C>A, -, c.21747G>T, c.(21745-21747)agG>agT, p.R7249S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1005](MUC16, 19, 9001894, 9001894, MISSENSE, SNP, G, A, g.chr19:9001894G>A, -, c.40354C>T, c.(40354-40356)Cct>Tct, p.P13452S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1006](MUC16, 19, 9057582, 9057582, MISSENSE, SNP, G, A, g.chr19:9057582G>A, -, c.29864C>T, c.(29863-29865)aCc>aTc, p.T9955I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1007](MUC16, 19, 9072036, 9072036, MISSENSE, SNP, G, A, g.chr19:9072036G>A, -, c.15410C>T, c.(15409-15411)tCc>tTc, p.S5137F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1008](MUC16, 19, 9075374, 9075374, MISSENSE, SNP, C, T, g.chr19:9075374C>T, -, c.12072G>A, c.(12070-12072)atG>atA, p.M4024I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.094s |
passed |
| testCreateFuncotations[1009](MUC16, 19, 9076820, 9076820, SILENT, SNP, G, A, g.chr19:9076820G>A, -, c.10626C>T, c.(10624-10626)atC>atT, p.I3542I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[100](MUC16, 19, 9071189, 9071189, SILENT, SNP, G, T, g.chr19:9071189G>T, -, c.16257C>A, c.(16255-16257)tcC>tcA, p.S5419S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1010](MUC16, 19, 9076887, 9076887, MISSENSE, SNP, G, A, g.chr19:9076887G>A, -, c.10559C>T, c.(10558-10560)tCa>tTa, p.S3520L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1011](MUC16, 19, 9047523, 9047523, MISSENSE, SNP, G, T, g.chr19:9047523G>T, -, c.34108C>A, c.(34108-34110)Cat>Aat, p.H11370N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1012](MUC16, 19, 9049482, 9049482, MISSENSE, SNP, C, A, g.chr19:9049482C>A, -, c.32149G>T, c.(32149-32151)Ggg>Tgg, p.G10717W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1013](MUC16, 19, 9063269, 9063269, SILENT, SNP, G, T, g.chr19:9063269G>T, -, c.24177C>A, c.(24175-24177)acC>acA, p.T8059T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1014](MUC16, 19, 9067202, 9067202, MISSENSE, SNP, C, A, g.chr19:9067202C>A, -, c.20244G>T, c.(20242-20244)caG>caT, p.Q6748H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1015](MUC16, 19, 9067377, 9067377, MISSENSE, SNP, C, A, g.chr19:9067377C>A, -, c.20069G>T, c.(20068-20070)aGg>aTg, p.R6690M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1016](MUC16, 19, 9069338, 9069338, SILENT, SNP, G, T, g.chr19:9069338G>T, -, c.18108C>A, c.(18106-18108)tcC>tcA, p.S6036S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1017](MUC16, 19, 9069789, 9069789, MISSENSE, SNP, C, A, g.chr19:9069789C>A, -, c.17657G>T, c.(17656-17658)tGg>tTg, p.W5886L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1018](MUC16, 19, 9069841, 9069841, MISSENSE, SNP, C, A, g.chr19:9069841C>A, -, c.17605G>T, c.(17605-17607)Ggg>Tgg, p.G5869W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1019](MUC16, 19, 9070701, 9070701, MISSENSE, SNP, C, A, g.chr19:9070701C>A, -, c.16745G>T, c.(16744-16746)tGg>tTg, p.W5582L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[101](MUC16, 19, 9075775, 9075775, MISSENSE, SNP, C, T, g.chr19:9075775C>T, -, c.11671G>A, c.(11671-11673)Gaa>Aaa, p.E3891K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1020](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1021](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1022](MUC16, 19, 9071306, 9071306, MISSENSE, SNP, C, A, g.chr19:9071306C>A, -, c.16140G>T, c.(16138-16140)ttG>ttT, p.L5380F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1023](MUC16, 19, 9076057, 9076057, NONSENSE, SNP, C, A, g.chr19:9076057C>A, -, c.11389G>T, c.(11389-11391)Gga>Tga, p.G3797*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1024](MUC16, 19, 9085769, 9085769, MISSENSE, SNP, G, A, g.chr19:9085769G>A, -, c.6046C>T, c.(6046-6048)Cat>Tat, p.H2016Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1025](MUC16, 19, 9087533, 9087533, NONSENSE, SNP, C, A, g.chr19:9087533C>A, -, c.4282G>T, c.(4282-4284)Gga>Tga, p.G1428*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1026](MUC16, 19, 9074606, 9074606, SILENT, SNP, G, A, g.chr19:9074606G>A, -, c.12840C>T, c.(12838-12840)atC>atT, p.I4280I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1027](MUC16, 19, 9090533, 9090533, MISSENSE, SNP, C, T, g.chr19:9090533C>T, -, c.1282G>A, c.(1282-1284)Gaa>Aaa, p.E428K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1028](MUC16, 19, 9005617, 9005617, SILENT, SNP, G, A, g.chr19:9005617G>A, -, c.39789C>T, c.(39787-39789)acC>acT, p.T13263T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1029](MUC16, 19, 9012794, 9012794, MISSENSE, SNP, C, T, g.chr19:9012794C>T, -, c.38650G>A, c.(38650-38652)Gag>Aag, p.E12884K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[102](MUC16, 19, 9075992, 9075992, SILENT, SNP, G, T, g.chr19:9075992G>T, -, c.11454C>A, c.(11452-11454)ccC>ccA, p.P3818P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1030](MUC16, 19, 9061224, 9061224, MISSENSE, SNP, G, A, g.chr19:9061224G>A, -, c.26222C>T, c.(26221-26223)tCc>tTc, p.S8741F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1031](MUC16, 19, 9063963, 9063963, MISSENSE, SNP, G, A, g.chr19:9063963G>A, -, c.23483C>T, c.(23482-23484)tCc>tTc, p.S7828F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1032](MUC16, 19, 9072184, 9072184, MISSENSE, SNP, C, T, g.chr19:9072184C>T, -, c.15262G>A, c.(15262-15264)Gaa>Aaa, p.E5088K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1033](MUC16, 19, 9074844, 9074844, MISSENSE, SNP, C, T, g.chr19:9074844C>T, -, c.12602G>A, c.(12601-12603)gGg>gAg, p.G4201E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1034](MUC16, 19, 9086150, 9086150, MISSENSE, SNP, C, T, g.chr19:9086150C>T, -, c.5665G>A, c.(5665-5667)Gga>Aga, p.G1889R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1035](MUC16, 19, 9088781, 9088781, MISSENSE, SNP, T, C, g.chr19:9088781T>C, -, c.3034A>G, c.(3034-3036)Act>Gct, p.T1012A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1036](MUC16, 19, 9057542, 9057542, SILENT, SNP, C, T, g.chr19:9057542C>T, -, c.29904G>A, c.(29902-29904)caG>caA, p.Q9968Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1037](MUC16, 19, 9060102, 9060102, MISSENSE, SNP, G, A, g.chr19:9060102G>A, -, c.27344C>T, c.(27343-27345)tCa>tTa, p.S9115L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1038](MUC16, 19, 9065577, 9065577, MISSENSE, SNP, G, A, g.chr19:9065577G>A, -, c.21869C>T, c.(21868-21870)tCc>tTc, p.S7290F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1039](MUC16, 19, 9066477, 9066477, MISSENSE, SNP, G, A, g.chr19:9066477G>A, -, c.20969C>T, c.(20968-20970)tCc>tTc, p.S6990F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[103](MUC16, 19, 9077276, 9077276, SILENT, SNP, G, T, g.chr19:9077276G>T, -, c.10170C>A, c.(10168-10170)acC>acA, p.T3390T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1040](MUC16, 19, 9072101, 9072101, SILENT, SNP, C, T, g.chr19:9072101C>T, -, c.15345G>A, c.(15343-15345)aaG>aaA, p.K5115K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1041](MUC16, 19, 9083586, 9083586, SILENT, SNP, C, T, g.chr19:9083586C>T, -, c.8229G>A, c.(8227-8229)tcG>tcA, p.S2743S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1042](MUC16, 19, 9084607, 9084607, MISSENSE, SNP, G, A, g.chr19:9084607G>A, -, c.7208C>T, c.(7207-7209)tCc>tTc, p.S2403F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1043](MUC16, 19, 9088521, 9088521, SILENT, SNP, C, T, g.chr19:9088521C>T, -, c.3294G>A, c.(3292-3294)agG>agA, p.R1098R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1044](MUC16, 19, 9014552, 9014552, MISSENSE, SNP, C, T, g.chr19:9014552C>T, -, c.38423G>A, c.(38422-38424)aGa>aAa, p.R12808K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1045](MUC16, 19, 9046211, 9046211, MISSENSE, SNP, C, T, g.chr19:9046211C>T, -, c.35420G>A, c.(35419-35421)gGt>gAt, p.G11807D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1046](MUC16, 19, 9065700, 9065700, MISSENSE, SNP, C, A, g.chr19:9065700C>A, -, c.21746G>T, c.(21745-21747)aGg>aTg, p.R7249M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1047](MUC16, 19, 9068621, 9068621, SILENT, SNP, T, A, g.chr19:9068621T>A, -, c.18825A>T, c.(18823-18825)tcA>tcT, p.S6275S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1048](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1049](MUC16, 19, 9014698, 9014698, SILENT, SNP, C, T, g.chr19:9014698C>T, -, c.38277G>A, c.(38275-38277)gaG>gaA, p.E12759E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[104](MUC16, 19, 9086846, 9086846, MISSENSE, SNP, G, T, g.chr19:9086846G>T, -, c.4969C>A, c.(4969-4971)Cca>Aca, p.P1657T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1050](MUC16, 19, 9049043, 9049043, MISSENSE, SNP, G, A, g.chr19:9049043G>A, -, c.32588C>T, c.(32587-32589)tCa>tTa, p.S10863L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1051](MUC16, 19, 9049196, 9049196, MISSENSE, SNP, G, T, g.chr19:9049196G>T, -, c.32435C>A, c.(32434-32436)aCa>aAa, p.T10812K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1052](MUC16, 19, 9050048, 9050048, MISSENSE, SNP, G, T, g.chr19:9050048G>T, -, c.31583C>A, c.(31582-31584)cCa>cAa, p.P10528Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1053](MUC16, 19, 9089405, 9089405, MISSENSE, SNP, C, A, g.chr19:9089405C>A, -, c.2410G>T, c.(2410-2412)Ggg>Tgg, p.G804W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1054](MUC16, 19, 9061038, 9061038, MISSENSE, SNP, G, A, g.chr19:9061038G>A, -, c.26408C>T, c.(26407-26409)aCc>aTc, p.T8803I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1055](MUC16, 19, 9088636, 9088636, MISSENSE, SNP, C, T, g.chr19:9088636C>T, -, c.3179G>A, c.(3178-3180)gGa>gAa, p.G1060E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1056](MUC16, 19, 9062546, 9062546, SILENT, SNP, G, A, g.chr19:9062546G>A, -, c.24900C>T, c.(24898-24900)ctC>ctT, p.L8300L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1057](MUC16, 19, 9012468, 9012468, SPLICE_SITE, SNP, C, A, g.chr19:9012468C>A, -, c.38738G>T, c.(38737-38739)aGg>aTg, p.R12913M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1058](MUC16, 19, 9060576, 9060576, MISSENSE, SNP, G, A, g.chr19:9060576G>A, -, c.26870C>T, c.(26869-26871)cCa>cTa, p.P8957L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1059](MUC16, 19, 9027227, 9027227, MISSENSE, SNP, G, T, g.chr19:9027227G>T, -, c.36659C>A, c.(36658-36660)cCc>cAc, p.P12220H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[105](MUC16, 19, 9087143, 9087143, MISSENSE, SNP, G, T, g.chr19:9087143G>T, -, c.4672C>A, c.(4672-4674)Ctt>Att, p.L1558I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1060](MUC16, 19, 9046631, 9046631, MISSENSE, SNP, C, T, g.chr19:9046631C>T, -, c.35000G>A, c.(34999-35001)gGg>gAg, p.G11667E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1061](MUC16, 19, 9046756, 9046756, SILENT, SNP, G, T, g.chr19:9046756G>T, -, c.34875C>A, c.(34873-34875)ccC>ccA, p.P11625P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1062](MUC16, 19, 9057805, 9057805, MISSENSE, SNP, C, T, g.chr19:9057805C>T, -, c.29641G>A, c.(29641-29643)Gag>Aag, p.E9881K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1063](MUC16, 19, 8979244, 8979244, MISSENSE, SNP, C, T, g.chr19:8979244C>T, -, c.42127G>A, c.(42127-42129)Gaa>Aaa, p.E14043K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1064](MUC16, 19, 8994157, 8994157, MISSENSE, SNP, C, T, g.chr19:8994157C>T, -, c.41528G>A, c.(41527-41529)aGg>aAg, p.R13843K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1065](MUC16, 19, 8999555, 8999555, SILENT, SNP, C, T, g.chr19:8999555C>T, -, c.40620G>A, c.(40618-40620)aaG>aaA, p.K13540K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1066](MUC16, 19, 9005594, 9005594, MISSENSE, SNP, G, A, g.chr19:9005594G>A, -, c.39812C>T, c.(39811-39813)cCc>cTc, p.P13271L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1067](MUC16, 19, 9009651, 9009651, SILENT, SNP, C, T, g.chr19:9009651C>T, -, c.39075G>A, c.(39073-39075)ggG>ggA, p.G13025G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1068](MUC16, 19, 9020092, 9020092, MISSENSE, SNP, C, T, g.chr19:9020092C>T, -, c.37403G>A, c.(37402-37404)aGc>aAc, p.S12468N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1069](MUC16, 19, 9026256, 9026256, MISSENSE, SNP, C, T, g.chr19:9026256C>T, -, c.36730G>A, c.(36730-36732)Gag>Aag, p.E12244K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[106](MUC16, 19, 9087679, 9087679, MISSENSE, SNP, G, T, g.chr19:9087679G>T, -, c.4136C>A, c.(4135-4137)cCg>cAg, p.P1379Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1070](MUC16, 19, 9045903, 9045903, MISSENSE, SNP, C, T, g.chr19:9045903C>T, -, c.35728G>A, c.(35728-35730)Gat>Aat, p.D11910N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1071](MUC16, 19, 9046592, 9046592, MISSENSE, SNP, G, A, g.chr19:9046592G>A, -, c.35039C>T, c.(35038-35040)cCc>cTc, p.P11680L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1072](MUC16, 19, 9047995, 9047995, SILENT, SNP, G, A, g.chr19:9047995G>A, -, c.33636C>T, c.(33634-33636)gtC>gtT, p.V11212V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1073](MUC16, 19, 9048589, 9048589, SILENT, SNP, C, T, g.chr19:9048589C>T, -, c.33042G>A, c.(33040-33042)gaG>gaA, p.E11014E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1074](MUC16, 19, 9056230, 9056230, MISSENSE, SNP, C, T, g.chr19:9056230C>T, -, c.31216G>A, c.(31216-31218)Gag>Aag, p.E10406K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1075](MUC16, 19, 9056445, 9056445, MISSENSE, SNP, G, A, g.chr19:9056445G>A, -, c.31001C>T, c.(31000-31002)tCt>tTt, p.S10334F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1076](MUC16, 19, 9060710, 9060710, MISSENSE, SNP, C, T, g.chr19:9060710C>T, -, c.26736G>A, c.(26734-26736)atG>atA, p.M8912I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1077](MUC16, 19, 9063773, 9063773, SILENT, SNP, G, A, g.chr19:9063773G>A, -, c.23673C>T, c.(23671-23673)ttC>ttT, p.F7891F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1078](MUC16, 19, 9064755, 9064755, MISSENSE, SNP, G, A, g.chr19:9064755G>A, -, c.22691C>T, c.(22690-22692)tCt>tTt, p.S7564F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1079](MUC16, 19, 9065029, 9065029, MISSENSE, SNP, G, A, g.chr19:9065029G>A, -, c.22417C>T, c.(22417-22419)Cct>Tct, p.P7473S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[107](MUC16, 19, 9087950, 9087950, MISSENSE, SNP, G, T, g.chr19:9087950G>T, -, c.3865C>A, c.(3865-3867)Cac>Aac, p.H1289N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[1080](MUC16, 19, 9065824, 9065824, MISSENSE, SNP, C, T, g.chr19:9065824C>T, -, c.21622G>A, c.(21622-21624)Gcc>Acc, p.A7208T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1081](MUC16, 19, 9066073, 9066073, MISSENSE, SNP, G, A, g.chr19:9066073G>A, -, c.21373C>T, c.(21373-21375)Cct>Tct, p.P7125S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1082](MUC16, 19, 9068506, 9068506, MISSENSE, SNP, C, T, g.chr19:9068506C>T, -, c.18940G>A, c.(18940-18942)Gaa>Aaa, p.E6314K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1083](MUC16, 19, 9069981, 9069981, MISSENSE, SNP, G, A, g.chr19:9069981G>A, -, c.17465C>T, c.(17464-17466)tCc>tTc, p.S5822F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1084](MUC16, 19, 9070567, 9070567, MISSENSE, SNP, C, T, g.chr19:9070567C>T, -, c.16879G>A, c.(16879-16881)Gaa>Aaa, p.E5627K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1085](MUC16, 19, 9071744, 9071744, SILENT, SNP, G, A, g.chr19:9071744G>A, -, c.15702C>T, c.(15700-15702)tcC>tcT, p.S5234S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1086](MUC16, 19, 9075298, 9075298, MISSENSE, SNP, C, T, g.chr19:9075298C>T, -, c.12148G>A, c.(12148-12150)Gaa>Aaa, p.E4050K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1087](MUC16, 19, 9075336, 9075336, MISSENSE, SNP, G, A, g.chr19:9075336G>A, -, c.12110C>T, c.(12109-12111)tCc>tTc, p.S4037F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1088](MUC16, 19, 9077304, 9077304, MISSENSE, SNP, G, A, g.chr19:9077304G>A, -, c.10142C>T, c.(10141-10143)tCa>tTa, p.S3381L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1089](MUC16, 19, 9080501, 9080501, MISSENSE, SNP, C, T, g.chr19:9080501C>T, -, c.9530G>A, c.(9529-9531)gGa>gAa, p.G3177E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[108](MUC16, 19, 9090826, 9090826, MISSENSE, SNP, G, A, g.chr19:9090826G>A, -, c.989C>T, c.(988-990)tCc>tTc, p.S330F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1090](MUC16, 19, 9082904, 9082904, MISSENSE, SNP, C, T, g.chr19:9082904C>T, -, c.8911G>A, c.(8911-8913)Gca>Aca, p.A2971T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1091](MUC16, 19, 9085999, 9085999, MISSENSE, SNP, G, A, g.chr19:9085999G>A, -, c.5816C>T, c.(5815-5817)tCa>tTa, p.S1939L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1092](MUC16, 19, 9089417, 9089417, MISSENSE, SNP, C, T, g.chr19:9089417C>T, -, c.2398G>A, c.(2398-2400)Gaa>Aaa, p.E800K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1093](MUC16, 19, 9089741, 9089741, MISSENSE, SNP, C, T, g.chr19:9089741C>T, -, c.2074G>A, c.(2074-2076)Gaa>Aaa, p.E692K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1094](MUC16, 19, 9089878, 9089878, MISSENSE, SNP, C, T, g.chr19:9089878C>T, -, c.1937G>A, c.(1936-1938)gGt>gAt, p.G646D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1095](MUC16, 19, 9091236, 9091236, MISSENSE, SNP, C, T, g.chr19:9091236C>T, -, c.579G>A, c.(577-579)atG>atA, p.M193I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1096](MUC16, 19, 9091517, 9091517, MISSENSE, SNP, T, C, g.chr19:9091517T>C, -, c.298A>G, c.(298-300)Aga>Gga, p.R100G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1097](MUC16, 19, 8995964, 8995964, SILENT, SNP, G, A, g.chr19:8995964G>A, -, c.41277C>T, c.(41275-41277)tcC>tcT, p.S13759S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1098](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1099](MUC16, 19, 9012527, 9012527, SILENT, SNP, G, T, g.chr19:9012527G>T, -, c.38679C>A, c.(38677-38679)ccC>ccA, p.P12893P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[109](MUC16, 19, 9064689, 9064689, MISSENSE, SNP, G, A, g.chr19:9064689G>A, -, c.22757C>T, c.(22756-22758)tCc>tTc, p.S7586F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[10](MUC16, 19, 8994416, 8994416, SPLICE_SITE, SNP, C, T, g.chr19:8994416C>T, -, c.e64-1G>A, c.e64+1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[1100](MUC16, 19, 9020020, 9020020, MISSENSE, SNP, G, T, g.chr19:9020020G>T, -, c.37475C>A, c.(37474-37476)cCc>cAc, p.P12492H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1101](MUC16, 19, 9048748, 9048748, SILENT, SNP, G, A, g.chr19:9048748G>A, -, c.32883C>T, c.(32881-32883)acC>acT, p.T10961T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1102](MUC16, 19, 9049655, 9049655, MISSENSE, SNP, G, A, g.chr19:9049655G>A, -, c.31976C>T, c.(31975-31977)tCg>tTg, p.S10659L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1103](MUC16, 19, 9056574, 9056574, MISSENSE, SNP, G, A, g.chr19:9056574G>A, -, c.30872C>T, c.(30871-30873)aCc>aTc, p.T10291I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1104](MUC16, 19, 9064631, 9064631, SILENT, SNP, G, A, g.chr19:9064631G>A, -, c.22815C>T, c.(22813-22815)ccC>ccT, p.P7605P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1105](MUC16, 19, 9069548, 9069548, SILENT, SNP, C, T, g.chr19:9069548C>T, -, c.17898G>A, c.(17896-17898)agG>agA, p.R5966R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1106](MUC16, 19, 9070500, 9070500, MISSENSE, SNP, G, A, g.chr19:9070500G>A, -, c.16946C>T, c.(16945-16947)tCa>tTa, p.S5649L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1107](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1108](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1109](MUC16, 19, 9074217, 9074217, MISSENSE, SNP, G, A, g.chr19:9074217G>A, -, c.13229C>T, c.(13228-13230)cCt>cTt, p.P4410L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[110](MUC16, 19, 9070973, 9070973, SILENT, SNP, C, T, g.chr19:9070973C>T, -, c.16473G>A, c.(16471-16473)gaG>gaA, p.E5491E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1110](MUC16, 19, 9075687, 9075687, MISSENSE, SNP, G, A, g.chr19:9075687G>A, -, c.11759C>T, c.(11758-11760)tCa>tTa, p.S3920L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1111](MUC16, 19, 9076809, 9076809, MISSENSE, SNP, C, T, g.chr19:9076809C>T, -, c.10637G>A, c.(10636-10638)gGa>gAa, p.G3546E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1112](MUC16, 19, 9076840, 9076840, MISSENSE, SNP, G, A, g.chr19:9076840G>A, -, c.10606C>T, c.(10606-10608)Cca>Tca, p.P3536S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1113](MUC16, 19, 9080501, 9080501, MISSENSE, SNP, C, T, g.chr19:9080501C>T, -, c.9530G>A, c.(9529-9531)gGa>gAa, p.G3177E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1114](MUC16, 19, 9085046, 9085046, MISSENSE, SNP, C, T, g.chr19:9085046C>T, -, c.6769G>A, c.(6769-6771)Gat>Aat, p.D2257N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1115](MUC16, 19, 9089642, 9089642, MISSENSE, SNP, G, A, g.chr19:9089642G>A, -, c.2173C>T, c.(2173-2175)Cct>Tct, p.P725S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1116](MUC16, 19, 9074696, 9074696, SILENT, SNP, C, T, g.chr19:9074696C>T, -, c.12750G>A, c.(12748-12750)acG>acA, p.T4250T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1117](MUC16, 19, 8982296, 8982296, SILENT, SNP, G, A, g.chr19:8982296G>A, -, c.41979C>T, c.(41977-41979)gaC>gaT, p.D13993D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1118](MUC16, 19, 8999484, 8999484, MISSENSE, SNP, C, T, g.chr19:8999484C>T, -, c.40691G>A, c.(40690-40692)aGa>aAa, p.R13564K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1119](MUC16, 19, 9048281, 9048281, MISSENSE, SNP, G, T, g.chr19:9048281G>T, -, c.33350C>A, c.(33349-33351)aCt>aAt, p.T11117N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[111](MUC16, 19, 9077538, 9077538, MISSENSE, SNP, C, T, g.chr19:9077538C>T, -, c.9908G>A, c.(9907-9909)gGg>gAg, p.G3303E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1120](MUC16, 19, 9049835, 9049835, MISSENSE, SNP, C, A, g.chr19:9049835C>A, -, c.31796G>T, c.(31795-31797)tGg>tTg, p.W10599L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1121](MUC16, 19, 9057123, 9057123, MISSENSE, SNP, C, T, g.chr19:9057123C>T, -, c.30323G>A, c.(30322-30324)gGa>gAa, p.G10108E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1122](MUC16, 19, 9060263, 9060263, SILENT, SNP, C, T, g.chr19:9060263C>T, -, c.27183G>A, c.(27181-27183)gtG>gtA, p.V9061V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1123](MUC16, 19, 9062517, 9062517, MISSENSE, SNP, C, T, g.chr19:9062517C>T, -, c.24929G>A, c.(24928-24930)aGg>aAg, p.R8310K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1124](MUC16, 19, 9065720, 9065720, SILENT, SNP, G, A, g.chr19:9065720G>A, -, c.21726C>T, c.(21724-21726)tcC>tcT, p.S7242S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1125](MUC16, 19, 9067238, 9067238, SILENT, SNP, G, A, g.chr19:9067238G>A, -, c.20208C>T, c.(20206-20208)atC>atT, p.I6736I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1126](MUC16, 19, 9067716, 9067716, MISSENSE, SNP, G, A, g.chr19:9067716G>A, -, c.19730C>T, c.(19729-19731)tCa>tTa, p.S6577L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1127](MUC16, 19, 9067725, 9067725, MISSENSE, SNP, G, T, g.chr19:9067725G>T, -, c.19721C>A, c.(19720-19722)cCg>cAg, p.P6574Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1128](MUC16, 19, 9068223, 9068223, MISSENSE, SNP, C, T, g.chr19:9068223C>T, -, c.19223G>A, c.(19222-19224)aGa>aAa, p.R6408K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1129](MUC16, 19, 9068484, 9068484, MISSENSE, SNP, G, A, g.chr19:9068484G>A, -, c.18962C>T, c.(18961-18963)cCt>cTt, p.P6321L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[112](MUC16, 19, 9084244, 9084244, MISSENSE, SNP, G, A, g.chr19:9084244G>A, -, c.7571C>T, c.(7570-7572)cCt>cTt, p.P2524L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1130](MUC16, 19, 9071952, 9071952, MISSENSE, SNP, G, T, g.chr19:9071952G>T, -, c.15494C>A, c.(15493-15495)cCt>cAt, p.P5165H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1131](MUC16, 19, 9073155, 9073155, MISSENSE, SNP, G, T, g.chr19:9073155G>T, -, c.14291C>A, c.(14290-14292)cCg>cAg, p.P4764Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1132](MUC16, 19, 9074140, 9074140, MISSENSE, SNP, G, A, g.chr19:9074140G>A, -, c.13306C>T, c.(13306-13308)Ccc>Tcc, p.P4436S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1133](MUC16, 19, 9074822, 9074822, SILENT, SNP, C, T, g.chr19:9074822C>T, -, c.12624G>A, c.(12622-12624)agG>agA, p.R4208R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1134](MUC16, 19, 9075310, 9075310, MISSENSE, SNP, C, A, g.chr19:9075310C>A, -, c.12136G>T, c.(12136-12138)Ggg>Tgg, p.G4046W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1135](MUC16, 19, 9088834, 9088834, MISSENSE, SNP, G, A, g.chr19:9088834G>A, -, c.2981C>T, c.(2980-2982)gCt>gTt, p.A994V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1136](MUC16, 19, 9046787, 9046787, MISSENSE, SNP, C, G, g.chr19:9046787C>G, -, c.34844G>C, c.(34843-34845)aGg>aCg, p.R11615T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1137](MUC16, 19, 9086883, 9086883, SILENT, SNP, G, A, g.chr19:9086883G>A, -, c.4932C>T, c.(4930-4932)acC>acT, p.T1644T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1138](MUC16, 19, 9048603, 9048603, MISSENSE, SNP, G, A, g.chr19:9048603G>A, -, c.33028C>T, c.(33028-33030)Cct>Tct, p.P11010S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1139](MUC16, 19, 9064305, 9064305, MISSENSE, SNP, G, A, g.chr19:9064305G>A, -, c.23141C>T, c.(23140-23142)cCc>cTc, p.P7714L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[113](MUC16, 19, 9000512, 9000512, MISSENSE, SNP, C, A, g.chr19:9000512C>A, -, c.40472G>T, c.(40471-40473)cGg>cTg, p.R13491L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1140](MUC16, 19, 9069660, 9069660, MISSENSE, SNP, G, A, g.chr19:9069660G>A, -, c.17786C>T, c.(17785-17787)tCc>tTc, p.S5929F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1141](MUC16, 19, 9077379, 9077379, MISSENSE, SNP, C, A, g.chr19:9077379C>A, -, c.10067G>T, c.(10066-10068)gGg>gTg, p.G3356V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1142](MUC16, 19, 9077737, 9077737, MISSENSE, SNP, G, A, g.chr19:9077737G>A, -, c.9709C>T, c.(9709-9711)Ccc>Tcc, p.P3237S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1143](MUC16, 19, 9082867, 9082867, MISSENSE, SNP, C, A, g.chr19:9082867C>A, -, c.8948G>T, c.(8947-8949)gGg>gTg, p.G2983V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1144](MUC16, 19, 9083313, 9083313, SILENT, SNP, C, T, g.chr19:9083313C>T, -, c.8502G>A, c.(8500-8502)acG>acA, p.T2834T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1145](MUC16, 19, 9084257, 9084257, MISSENSE, SNP, G, A, g.chr19:9084257G>A, -, c.7558C>T, c.(7558-7560)Ctc>Ttc, p.L2520F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1146](MUC16, 19, 9087450, 9087450, SILENT, SNP, G, T, g.chr19:9087450G>T, -, c.4365C>A, c.(4363-4365)ctC>ctA, p.L1455L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1147](MUC16, 19, 9090722, 9090722, MISSENSE, SNP, G, A, g.chr19:9090722G>A, -, c.1093C>T, c.(1093-1095)Ctt>Ttt, p.L365F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1148](MUC16, 19, 9090772, 9090772, MISSENSE, SNP, G, A, g.chr19:9090772G>A, -, c.1043C>T, c.(1042-1044)tCc>tTc, p.S348F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1149](MUC16, 19, 9077160, 9077160, MISSENSE, SNP, C, A, g.chr19:9077160C>A, -, c.10286G>T, c.(10285-10287)tGg>tTg, p.W3429L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[114](MUC16, 19, 9012790, 9012790, MISSENSE, SNP, C, A, g.chr19:9012790C>A, -, c.38654G>T, c.(38653-38655)cGg>cTg, p.R12885L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1150](MUC16, 19, 9085008, 9085008, SILENT, SNP, C, T, g.chr19:9085008C>T, -, c.6807G>A, c.(6805-6807)aaG>aaA, p.K2269K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1151](MUC16, 19, 9088249, 9088249, MISSENSE, SNP, C, A, g.chr19:9088249C>A, -, c.3566G>T, c.(3565-3567)cGg>cTg, p.R1189L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1152](MUC16, 19, 9090445, 9090445, MISSENSE, SNP, G, T, g.chr19:9090445G>T, -, c.1370C>A, c.(1369-1371)cCc>cAc, p.P457H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1153](MUC16, 19, 9061313, 9061313, SILENT, SNP, C, T, g.chr19:9061313C>T, -, c.26133G>A, c.(26131-26133)agG>agA, p.R8711R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1154](MUC16, 19, 9065080, 9065080, MISSENSE, SNP, C, T, g.chr19:9065080C>T, -, c.22366G>A, c.(22366-22368)Gtt>Att, p.V7456I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1155](MUC16, 19, 9069690, 9069690, MISSENSE, SNP, G, A, g.chr19:9069690G>A, -, c.17756C>T, c.(17755-17757)cCc>cTc, p.P5919L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1156](MUC16, 19, 9071467, 9071467, MISSENSE, SNP, G, A, g.chr19:9071467G>A, -, c.15979C>T, c.(15979-15981)Ccc>Tcc, p.P5327S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1157](MUC16, 19, 9072472, 9072472, MISSENSE, SNP, C, T, g.chr19:9072472C>T, -, c.14974G>A, c.(14974-14976)Gac>Aac, p.D4992N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1158](MUC16, 19, 9072844, 9072844, MISSENSE, SNP, C, T, g.chr19:9072844C>T, -, c.14602G>A, c.(14602-14604)Gaa>Aaa, p.E4868K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1159](MUC16, 19, 9076384, 9076384, MISSENSE, SNP, G, A, g.chr19:9076384G>A, -, c.11062C>T, c.(11062-11064)Cct>Tct, p.P3688S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[115](MUC16, 19, 9012839, 9012839, NONSENSE, SNP, C, A, g.chr19:9012839C>A, -, c.38605G>T, c.(38605-38607)Gag>Tag, p.E12869*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1160](MUC16, 19, 9086722, 9086722, MISSENSE, SNP, C, T, g.chr19:9086722C>T, -, c.5093G>A, c.(5092-5094)gGa>gAa, p.G1698E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1161](MUC16, 19, 9088812, 9088812, SILENT, SNP, G, A, g.chr19:9088812G>A, -, c.3003C>T, c.(3001-3003)ttC>ttT, p.F1001F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1162](MUC16, 19, 9088841, 9088841, MISSENSE, SNP, G, C, g.chr19:9088841G>C, -, c.2974C>G, c.(2974-2976)Ctc>Gtc, p.L992V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1163](MUC16, 19, 9054252, 9054252, MISSENSE, SNP, G, A, g.chr19:9054252G>A, -, c.31370C>T, c.(31369-31371)tCg>tTg, p.S10457L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1164](MUC16, 19, 9056299, 9056299, MISSENSE, SNP, C, T, g.chr19:9056299C>T, -, c.31147G>A, c.(31147-31149)Gac>Aac, p.D10383N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1165](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1166](MUC16, 19, 8982202, 8982202, SILENT, SNP, G, T, g.chr19:8982202G>T, -, c.42073C>A, c.(42073-42075)Cgg>Agg, p.R14025R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1167](MUC16, 19, 9003572, 9003572, MISSENSE, SNP, C, A, g.chr19:9003572C>A, -, c.40068G>T, c.(40066-40068)caG>caT, p.Q13356H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1168](MUC16, 19, 9008208, 9008208, MISSENSE, SNP, G, A, g.chr19:9008208G>A, -, c.39344C>T, c.(39343-39345)cCc>cTc, p.P13115L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1169](MUC16, 19, 9015627, 9015627, SILENT, SNP, C, T, g.chr19:9015627C>T, -, c.38196G>A, c.(38194-38196)caG>caA, p.Q12732Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[116](MUC16, 19, 9049546, 9049546, SILENT, SNP, G, T, g.chr19:9049546G>T, -, c.32085C>A, c.(32083-32085)ccC>ccA, p.P10695P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1170](MUC16, 19, 9048013, 9048013, SILENT, SNP, C, T, g.chr19:9048013C>T, -, c.33618G>A, c.(33616-33618)ggG>ggA, p.G11206G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1171](MUC16, 19, 9050215, 9050215, MISSENSE, SNP, C, A, g.chr19:9050215C>A, -, c.31416G>T, c.(31414-31416)atG>atT, p.M10472I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1172](MUC16, 19, 9056795, 9056795, SILENT, SNP, G, A, g.chr19:9056795G>A, -, c.30651C>T, c.(30649-30651)gcC>gcT, p.A10217A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1173](MUC16, 19, 9057678, 9057678, MISSENSE, SNP, G, T, g.chr19:9057678G>T, -, c.29768C>A, c.(29767-29769)cCt>cAt, p.P9923H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1174](MUC16, 19, 9062384, 9062384, SILENT, SNP, G, T, g.chr19:9062384G>T, -, c.25062C>A, c.(25060-25062)acC>acA, p.T8354T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.098s |
passed |
| testCreateFuncotations[1175](MUC16, 19, 9062444, 9062444, SILENT, SNP, G, T, g.chr19:9062444G>T, -, c.25002C>A, c.(25000-25002)acC>acA, p.T8334T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1176](MUC16, 19, 9066457, 9066457, MISSENSE, SNP, G, A, g.chr19:9066457G>A, -, c.20989C>T, c.(20989-20991)Cct>Tct, p.P6997S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1177](MUC16, 19, 9068232, 9068232, MISSENSE, SNP, G, A, g.chr19:9068232G>A, -, c.19214C>T, c.(19213-19215)tCc>tTc, p.S6405F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1178](MUC16, 19, 9069614, 9069614, SILENT, SNP, G, A, g.chr19:9069614G>A, -, c.17832C>T, c.(17830-17832)tcC>tcT, p.S5944S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1179](MUC16, 19, 9070567, 9070567, MISSENSE, SNP, C, T, g.chr19:9070567C>T, -, c.16879G>A, c.(16879-16881)Gaa>Aaa, p.E5627K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[117](MUC16, 19, 9059573, 9059573, MISSENSE, SNP, C, A, g.chr19:9059573C>A, -, c.27873G>T, c.(27871-27873)atG>atT, p.M9291I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1180](MUC16, 19, 9072421, 9072421, MISSENSE, SNP, C, T, g.chr19:9072421C>T, -, c.15025G>A, c.(15025-15027)Gga>Aga, p.G5009R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1181](MUC16, 19, 9075994, 9075994, MISSENSE, SNP, G, A, g.chr19:9075994G>A, -, c.11452C>T, c.(11452-11454)Ccc>Tcc, p.P3818S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1182](MUC16, 19, 9076487, 9076487, SILENT, SNP, C, T, g.chr19:9076487C>T, -, c.10959G>A, c.(10957-10959)aaG>aaA, p.K3653K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1183](MUC16, 19, 9083540, 9083540, MISSENSE, SNP, G, T, g.chr19:9083540G>T, -, c.8275C>A, c.(8275-8277)Ctt>Att, p.L2759I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1184](MUC16, 19, 9086175, 9086175, MISSENSE, SNP, A, T, g.chr19:9086175A>T, -, c.5640T>A, c.(5638-5640)gaT>gaA, p.D1880E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1185](MUC16, 19, 9086177, 9086177, MISSENSE, SNP, C, T, g.chr19:9086177C>T, -, c.5638G>A, c.(5638-5640)Gat>Aat, p.D1880N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1186](MUC16, 19, 9088106, 9088106, MISSENSE, SNP, G, A, g.chr19:9088106G>A, -, c.3709C>T, c.(3709-3711)Cca>Tca, p.P1237S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1187](MUC16, 19, 9089251, 9089251, MISSENSE, SNP, G, A, g.chr19:9089251G>A, -, c.2564C>T, c.(2563-2565)cCt>cTt, p.P855L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1188](MUC16, 19, 9090497, 9090497, MISSENSE, SNP, G, A, g.chr19:9090497G>A, -, c.1318C>T, c.(1318-1320)Ctt>Ttt, p.L440F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1189](MUC16, 19, 9026203, 9026203, SILENT, SNP, G, A, g.chr19:9026203G>A, -, c.36783C>T, c.(36781-36783)gtC>gtT, p.V12261V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[118](MUC16, 19, 9065576, 9065576, SILENT, SNP, G, T, g.chr19:9065576G>T, -, c.21870C>A, c.(21868-21870)tcC>tcA, p.S7290S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1190](MUC16, 19, 9061470, 9061470, MISSENSE, SNP, G, A, g.chr19:9061470G>A, -, c.25976C>T, c.(25975-25977)tCc>tTc, p.S8659F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1191](MUC16, 19, 9064411, 9064411, MISSENSE, SNP, G, A, g.chr19:9064411G>A, -, c.23035C>T, c.(23035-23037)Ccc>Tcc, p.P7679S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1192](MUC16, 19, 8994513, 8994513, SILENT, SNP, G, A, g.chr19:8994513G>A, -, c.41379C>T, c.(41377-41379)ttC>ttT, p.F13793F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1193](MUC16, 19, 9049034, 9049034, MISSENSE, SNP, G, A, g.chr19:9049034G>A, -, c.32597C>T, c.(32596-32598)cCa>cTa, p.P10866L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1194](MUC16, 19, 9056568, 9056568, MISSENSE, SNP, C, T, g.chr19:9056568C>T, -, c.30878G>A, c.(30877-30879)gGa>gAa, p.G10293E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1195](MUC16, 19, 9057400, 9057400, MISSENSE, SNP, C, T, g.chr19:9057400C>T, -, c.30046G>A, c.(30046-30048)Gaa>Aaa, p.E10016K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1196](MUC16, 19, 9064771, 9064771, MISSENSE, SNP, C, A, g.chr19:9064771C>A, -, c.22675G>T, c.(22675-22677)Gca>Tca, p.A7559S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1197](MUC16, 19, 9088103, 9088103, MISSENSE, SNP, T, C, g.chr19:9088103T>C, -, c.3712A>G, c.(3712-3714)Acc>Gcc, p.T1238A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1198](MUC16, 19, 9013857, 9013857, MISSENSE, SNP, G, A, g.chr19:9013857G>A, -, c.38533C>T, c.(38533-38535)Ccc>Tcc, p.P12845S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1199](MUC16, 19, 9015342, 9015342, MISSENSE, SNP, G, A, g.chr19:9015342G>A, -, c.38246C>T, c.(38245-38247)tCt>tTt, p.S12749F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[119](MUC16, 19, 9066675, 9066675, MISSENSE, SNP, C, A, g.chr19:9066675C>A, -, c.20771G>T, c.(20770-20772)gGg>gTg, p.G6924V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[11](MUC16, 19, 9008345, 9008345, SPLICE_SITE, SNP, C, T, g.chr19:9008345C>T, -, c.39207G>A, c.(39205-39207)agG>agA, p.R13069R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1200](MUC16, 19, 9057032, 9057032, SILENT, SNP, G, A, g.chr19:9057032G>A, -, c.30414C>T, c.(30412-30414)tcC>tcT, p.S10138S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1201](MUC16, 19, 9058672, 9058672, MISSENSE, SNP, G, T, g.chr19:9058672G>T, -, c.28774C>A, c.(28774-28776)Cag>Aag, p.Q9592K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1202](MUC16, 19, 9059493, 9059493, MISSENSE, SNP, G, A, g.chr19:9059493G>A, -, c.27953C>T, c.(27952-27954)aCt>aTt, p.T9318I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1203](MUC16, 19, 9063255, 9063255, MISSENSE, SNP, G, A, g.chr19:9063255G>A, -, c.24191C>T, c.(24190-24192)tCc>tTc, p.S8064F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1204](MUC16, 19, 9065398, 9065398, MISSENSE, SNP, A, T, g.chr19:9065398A>T, -, c.22048T>A, c.(22048-22050)Tcc>Acc, p.S7350T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1205](MUC16, 19, 9066340, 9066340, MISSENSE, SNP, G, A, g.chr19:9066340G>A, -, c.21106C>T, c.(21106-21108)Cct>Tct, p.P7036S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1206](MUC16, 19, 9082600, 9082600, MISSENSE, SNP, T, C, g.chr19:9082600T>C, -, c.9215A>G, c.(9214-9216)cAg>cGg, p.Q3072R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1207](MUC16, 19, 9090133, 9090133, MISSENSE, SNP, G, A, g.chr19:9090133G>A, -, c.1682C>T, c.(1681-1683)tCt>tTt, p.S561F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1208](MUC16, 19, 9091052, 9091052, MISSENSE, SNP, C, T, g.chr19:9091052C>T, -, c.763G>A, c.(763-765)Gaa>Aaa, p.E255K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1209](MUC16, 19, 9091598, 9091598, MISSENSE, SNP, C, T, g.chr19:9091598C>T, -, c.217G>A, c.(217-219)Gga>Aga, p.G73R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[120](MUC16, 19, 9068753, 9068753, SILENT, SNP, G, T, g.chr19:9068753G>T, -, c.18693C>A, c.(18691-18693)acC>acA, p.T6231T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1210](MUC16, 19, 9070067, 9070067, SILENT, SNP, G, A, g.chr19:9070067G>A, -, c.17379C>T, c.(17377-17379)atC>atT, p.I5793I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1211](MUC16, 19, 9085504, 9085504, MISSENSE, SNP, C, T, g.chr19:9085504C>T, -, c.6311G>A, c.(6310-6312)aGa>aAa, p.R2104K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1212](MUC16, 19, 9085830, 9085830, SILENT, SNP, A, T, g.chr19:9085830A>T, -, c.5985T>A, c.(5983-5985)gtT>gtA, p.V1995V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1213](MUC16, 19, 8982210, 8982210, MISSENSE, SNP, C, A, g.chr19:8982210C>A, -, c.42065G>T, c.(42064-42066)gGc>gTc, p.G14022V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1214](MUC16, 19, 9018509, 9018509, SILENT, SNP, C, T, g.chr19:9018509C>T, -, c.37665G>A, c.(37663-37665)ctG>ctA, p.L12555L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1215](MUC16, 19, 9024197, 9024197, MISSENSE, SNP, G, A, g.chr19:9024197G>A, -, c.37075C>T, c.(37075-37077)Cct>Tct, p.P12359S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1216](MUC16, 19, 9046079, 9046079, MISSENSE, SNP, G, A, g.chr19:9046079G>A, -, c.35552C>T, c.(35551-35553)tCc>tTc, p.S11851F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1217](MUC16, 19, 9049915, 9049915, SILENT, SNP, G, A, g.chr19:9049915G>A, -, c.31716C>T, c.(31714-31716)gtC>gtT, p.V10572V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1218](MUC16, 19, 9076735, 9076735, MISSENSE, SNP, C, T, g.chr19:9076735C>T, -, c.10711G>A, c.(10711-10713)Gag>Aag, p.E3571K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1219](MUC16, 19, 9080501, 9080501, MISSENSE, SNP, C, T, g.chr19:9080501C>T, -, c.9530G>A, c.(9529-9531)gGa>gAa, p.G3177E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[121](MUC16, 19, 9069230, 9069230, SILENT, SNP, G, T, g.chr19:9069230G>T, -, c.18216C>A, c.(18214-18216)tcC>tcA, p.S6072S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1220](MUC16, 19, 9083864, 9083864, MISSENSE, SNP, G, A, g.chr19:9083864G>A, -, c.7951C>T, c.(7951-7953)Cct>Tct, p.P2651S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1221](MUC16, 19, 9090078, 9090078, SILENT, SNP, C, T, g.chr19:9090078C>T, -, c.1737G>A, c.(1735-1737)ggG>ggA, p.G579G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1222](MUC16, 19, 9045834, 9045834, MISSENSE, SNP, C, T, g.chr19:9045834C>T, -, c.35797G>A, c.(35797-35799)Gaa>Aaa, p.E11933K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1223](MUC16, 19, 9061310, 9061310, SILENT, SNP, C, T, g.chr19:9061310C>T, -, c.26136G>A, c.(26134-26136)gaG>gaA, p.E8712E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1224](MUC16, 19, 8976784, 8976784, SILENT, SNP, C, T, g.chr19:8976784C>T, -, c.42282G>A, c.(42280-42282)aaG>aaA, p.K14094K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1225](MUC16, 19, 9012850, 9012850, MISSENSE, SNP, T, C, g.chr19:9012850T>C, -, c.38594A>G, c.(38593-38595)aAc>aGc, p.N12865S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1226](MUC16, 19, 9018545, 9018545, SILENT, SNP, C, T, g.chr19:9018545C>T, -, c.37629G>A, c.(37627-37629)ctG>ctA, p.L12543L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1227](MUC16, 19, 9045750, 9045750, MISSENSE, SNP, C, T, g.chr19:9045750C>T, -, c.35881G>A, c.(35881-35883)Gga>Aga, p.G11961R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1228](MUC16, 19, 9048086, 9048086, MISSENSE, SNP, G, A, g.chr19:9048086G>A, -, c.33545C>T, c.(33544-33546)tCa>tTa, p.S11182L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1229](MUC16, 19, 9049005, 9049005, MISSENSE, SNP, C, T, g.chr19:9049005C>T, -, c.32626G>A, c.(32626-32628)Gga>Aga, p.G10876R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[122](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1230](MUC16, 19, 9049163, 9049163, MISSENSE, SNP, G, A, g.chr19:9049163G>A, -, c.32468C>T, c.(32467-32469)tCa>tTa, p.S10823L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1231](MUC16, 19, 9060158, 9060158, SILENT, SNP, C, T, g.chr19:9060158C>T, -, c.27288G>A, c.(27286-27288)ttG>ttA, p.L9096L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1232](MUC16, 19, 9060189, 9060189, MISSENSE, SNP, G, A, g.chr19:9060189G>A, -, c.27257C>T, c.(27256-27258)cCt>cTt, p.P9086L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1233](MUC16, 19, 9060859, 9060859, MISSENSE, SNP, T, C, g.chr19:9060859T>C, -, c.26587A>G, c.(26587-26589)Acc>Gcc, p.T8863A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1234](MUC16, 19, 9061169, 9061169, SILENT, SNP, G, A, g.chr19:9061169G>A, -, c.26277C>T, c.(26275-26277)tcC>tcT, p.S8759S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1235](MUC16, 19, 9064199, 9064199, SILENT, SNP, G, A, g.chr19:9064199G>A, -, c.23247C>T, c.(23245-23247)acC>acT, p.T7749T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1236](MUC16, 19, 9065032, 9065032, MISSENSE, SNP, G, A, g.chr19:9065032G>A, -, c.22414C>T, c.(22414-22416)Cat>Tat, p.H7472Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1237](MUC16, 19, 9065737, 9065737, NONSENSE, SNP, G, A, g.chr19:9065737G>A, -, c.21709C>T, c.(21709-21711)Cag>Tag, p.Q7237*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1238](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1239](MUC16, 19, 9074058, 9074058, MISSENSE, SNP, G, A, g.chr19:9074058G>A, -, c.13388C>T, c.(13387-13389)aCc>aTc, p.T4463I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[123](MUC16, 19, 9071965, 9071965, NONSENSE, SNP, C, A, g.chr19:9071965C>A, -, c.15481G>T, c.(15481-15483)Gga>Tga, p.G5161*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1240](MUC16, 19, 9074907, 9074907, MISSENSE, SNP, C, T, g.chr19:9074907C>T, -, c.12539G>A, c.(12538-12540)gGg>gAg, p.G4180E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1241](MUC16, 19, 9075542, 9075542, SILENT, SNP, G, A, g.chr19:9075542G>A, -, c.11904C>T, c.(11902-11904)atC>atT, p.I3968I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1242](MUC16, 19, 9076530, 9076530, MISSENSE, SNP, C, T, g.chr19:9076530C>T, -, c.10916G>A, c.(10915-10917)gGa>gAa, p.G3639E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1243](MUC16, 19, 9077304, 9077304, MISSENSE, SNP, G, A, g.chr19:9077304G>A, -, c.10142C>T, c.(10141-10143)tCa>tTa, p.S3381L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1244](MUC16, 19, 9085544, 9085544, MISSENSE, SNP, G, A, g.chr19:9085544G>A, -, c.6271C>T, c.(6271-6273)Cca>Tca, p.P2091S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1245](MUC16, 19, 9089940, 9089940, SILENT, SNP, G, A, g.chr19:9089940G>A, -, c.1875C>T, c.(1873-1875)caC>caT, p.H625H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.094s |
passed |
| testCreateFuncotations[1246](MUC16, 19, 9056625, 9056625, MISSENSE, SNP, G, A, g.chr19:9056625G>A, -, c.30821C>T, c.(30820-30822)tCc>tTc, p.S10274F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1247](MUC16, 19, 8974052, 8974052, MISSENSE, SNP, G, A, g.chr19:8974052G>A, -, c.42619C>T, c.(42619-42621)Cac>Tac, p.H14207Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1248](MUC16, 19, 9000146, 9000146, SPLICE_SITE, SNP, C, T, g.chr19:9000146C>T, -, c.e55-1G>A, c.e55+1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1249](MUC16, 19, 9049484, 9049484, MISSENSE, SNP, G, A, g.chr19:9049484G>A, -, c.32147C>T, c.(32146-32148)cCt>cTt, p.P10716L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[124](MUC16, 19, 9073155, 9073155, MISSENSE, SNP, G, T, g.chr19:9073155G>T, -, c.14291C>A, c.(14290-14292)cCg>cAg, p.P4764Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1250](MUC16, 19, 9058095, 9058095, MISSENSE, SNP, G, A, g.chr19:9058095G>A, -, c.29351C>T, c.(29350-29352)cCa>cTa, p.P9784L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1251](MUC16, 19, 9060904, 9060904, MISSENSE, SNP, C, T, g.chr19:9060904C>T, -, c.26542G>A, c.(26542-26544)Gaa>Aaa, p.E8848K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1252](MUC16, 19, 9063559, 9063559, MISSENSE, SNP, G, A, g.chr19:9063559G>A, -, c.23887C>T, c.(23887-23889)Ccc>Tcc, p.P7963S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1253](MUC16, 19, 9067908, 9067908, MISSENSE, SNP, G, A, g.chr19:9067908G>A, -, c.19538C>T, c.(19537-19539)tCc>tTc, p.S6513F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1254](MUC16, 19, 9077809, 9077809, MISSENSE, SNP, C, T, g.chr19:9077809C>T, -, c.9637G>A, c.(9637-9639)Gaa>Aaa, p.E3213K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1255](MUC16, 19, 9083035, 9083035, MISSENSE, SNP, G, A, g.chr19:9083035G>A, -, c.8780C>T, c.(8779-8781)tCc>tTc, p.S2927F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1256](MUC16, 19, 8973575, 8973575, SILENT, SNP, G, A, g.chr19:8973575G>A, -, c.42741C>T, c.(42739-42741)ttC>ttT, p.F14247F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1257](MUC16, 19, 8996489, 8996489, MISSENSE, SNP, C, T, g.chr19:8996489C>T, -, c.41083G>A, c.(41083-41085)Gaa>Aaa, p.E13695K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1258](MUC16, 19, 9003586, 9003586, MISSENSE, SNP, C, T, g.chr19:9003586C>T, -, c.40054G>A, c.(40054-40056)Gag>Aag, p.E13352K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1259](MUC16, 19, 9046503, 9046503, MISSENSE, SNP, G, T, g.chr19:9046503G>T, -, c.35128C>A, c.(35128-35130)Cat>Aat, p.H11710N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[125](MUC16, 19, 9075927, 9075927, MISSENSE, SNP, G, T, g.chr19:9075927G>T, -, c.11519C>A, c.(11518-11520)cCa>cAa, p.P3840Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1260](MUC16, 19, 9049121, 9049121, NONSENSE, SNP, C, T, g.chr19:9049121C>T, -, c.32510G>A, c.(32509-32511)tGg>tAg, p.W10837*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1261](MUC16, 19, 9054339, 9054339, MISSENSE, SNP, C, T, g.chr19:9054339C>T, -, c.31283G>A, c.(31282-31284)gGc>gAc, p.G10428D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1262](MUC16, 19, 9057040, 9057040, MISSENSE, SNP, G, A, g.chr19:9057040G>A, -, c.30406C>T, c.(30406-30408)Ccc>Tcc, p.P10136S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1263](MUC16, 19, 9058908, 9058908, MISSENSE, SNP, T, G, g.chr19:9058908T>G, -, c.28538A>C, c.(28537-28539)cAc>cCc, p.H9513P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1264](MUC16, 19, 9060306, 9060306, MISSENSE, SNP, C, T, g.chr19:9060306C>T, -, c.27140G>A, c.(27139-27141)aGc>aAc, p.S9047N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1265](MUC16, 19, 9062673, 9062673, MISSENSE, SNP, G, A, g.chr19:9062673G>A, -, c.24773C>T, c.(24772-24774)tCc>tTc, p.S8258F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1266](MUC16, 19, 9064721, 9064721, SILENT, SNP, G, A, g.chr19:9064721G>A, -, c.22725C>T, c.(22723-22725)tcC>tcT, p.S7575S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1267](MUC16, 19, 9065788, 9065788, MISSENSE, SNP, C, T, g.chr19:9065788C>T, -, c.21658G>A, c.(21658-21660)Gat>Aat, p.D7220N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1268](MUC16, 19, 9068117, 9068117, SILENT, SNP, C, T, g.chr19:9068117C>T, -, c.19329G>A, c.(19327-19329)agG>agA, p.R6443R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1269](MUC16, 19, 9070704, 9070704, MISSENSE, SNP, G, A, g.chr19:9070704G>A, -, c.16742C>T, c.(16741-16743)cCc>cTc, p.P5581L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[126](MUC16, 19, 9076671, 9076671, MISSENSE, SNP, C, A, g.chr19:9076671C>A, -, c.10775G>T, c.(10774-10776)tGg>tTg, p.W3592L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1270](MUC16, 19, 9072185, 9072185, MISSENSE, SNP, C, A, g.chr19:9072185C>A, -, c.15261G>T, c.(15259-15261)ttG>ttT, p.L5087F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1271](MUC16, 19, 9074177, 9074177, MISSENSE, SNP, A, T, g.chr19:9074177A>T, -, c.13269T>A, c.(13267-13269)ttT>ttA, p.F4423L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1272](MUC16, 19, 9074179, 9074179, MISSENSE, SNP, A, T, g.chr19:9074179A>T, -, c.13267T>A, c.(13267-13269)Ttt>Att, p.F4423I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1273](MUC16, 19, 9076497, 9076497, MISSENSE, SNP, G, A, g.chr19:9076497G>A, -, c.10949C>T, c.(10948-10950)tCa>tTa, p.S3650L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1274](MUC16, 19, 9082363, 9082363, MISSENSE, SNP, G, A, g.chr19:9082363G>A, -, c.9452C>T, c.(9451-9453)cCt>cTt, p.P3151L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1275](MUC16, 19, 9010664, 9010664, SILENT, SNP, G, A, g.chr19:9010664G>A, -, c.38997C>T, c.(38995-38997)tcC>tcT, p.S12999S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1276](MUC16, 19, 9057220, 9057220, SILENT, SNP, G, A, g.chr19:9057220G>A, -, c.30226C>T, c.(30226-30228)Ctg>Ttg, p.L10076L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1277](MUC16, 19, 9058301, 9058301, NONSENSE, SNP, C, T, g.chr19:9058301C>T, -, c.29145G>A, c.(29143-29145)tgG>tgA, p.W9715*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1278](MUC16, 19, 9065535, 9065535, MISSENSE, SNP, G, A, g.chr19:9065535G>A, -, c.21911C>T, c.(21910-21912)tCc>tTc, p.S7304F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1279](MUC16, 19, 9066247, 9066247, MISSENSE, SNP, G, A, g.chr19:9066247G>A, -, c.21199C>T, c.(21199-21201)Cca>Tca, p.P7067S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[127](MUC16, 19, 9080502, 9080502, NONSENSE, SNP, C, A, g.chr19:9080502C>A, -, c.9529G>T, c.(9529-9531)Gga>Tga, p.G3177*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1280](MUC16, 19, 9068965, 9068965, MISSENSE, SNP, G, A, g.chr19:9068965G>A, -, c.18481C>T, c.(18481-18483)Cct>Tct, p.P6161S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1281](MUC16, 19, 9077142, 9077142, MISSENSE, SNP, C, T, g.chr19:9077142C>T, -, c.10304G>A, c.(10303-10305)gGg>gAg, p.G3435E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1282](MUC16, 19, 9082369, 9082369, MISSENSE, SNP, G, A, g.chr19:9082369G>A, -, c.9446C>T, c.(9445-9447)tCa>tTa, p.S3149L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1283](MUC16, 19, 9084542, 9084542, MISSENSE, SNP, C, T, g.chr19:9084542C>T, -, c.7273G>A, c.(7273-7275)Gcc>Acc, p.A2425T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1284](MUC16, 19, 9050106, 9050106, MISSENSE, SNP, G, T, g.chr19:9050106G>T, -, c.31525C>A, c.(31525-31527)Ctc>Atc, p.L10509I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1285](MUC16, 19, 9060012, 9060012, MISSENSE, SNP, G, A, g.chr19:9060012G>A, -, c.27434C>T, c.(27433-27435)tCt>tTt, p.S9145F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1286](MUC16, 19, 9072891, 9072891, MISSENSE, SNP, G, T, g.chr19:9072891G>T, -, c.14555C>A, c.(14554-14556)cCa>cAa, p.P4852Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1287](MUC16, 19, 9087950, 9087950, MISSENSE, SNP, G, T, g.chr19:9087950G>T, -, c.3865C>A, c.(3865-3867)Cac>Aac, p.H1289N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1288](MUC16, 19, 9058555, 9058555, MISSENSE, SNP, G, A, g.chr19:9058555G>A, -, c.28891C>T, c.(28891-28893)Cct>Tct, p.P9631S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1289](MUC16, 19, 9064386, 9064386, MISSENSE, SNP, G, A, g.chr19:9064386G>A, -, c.23060C>T, c.(23059-23061)cCa>cTa, p.P7687L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[128](MUC16, 19, 9088023, 9088023, SILENT, SNP, G, T, g.chr19:9088023G>T, -, c.3792C>A, c.(3790-3792)acC>acA, p.T1264T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1290](MUC16, 19, 9065716, 9065716, MISSENSE, SNP, G, T, g.chr19:9065716G>T, -, c.21730C>A, c.(21730-21732)Ctg>Atg, p.L7244M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1291](MUC16, 19, 9018453, 9018453, MISSENSE, SNP, C, T, g.chr19:9018453C>T, -, c.37721G>A, c.(37720-37722)aGg>aAg, p.R12574K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1292](MUC16, 19, 9026227, 9026227, SILENT, SNP, C, T, g.chr19:9026227C>T, -, c.36759G>A, c.(36757-36759)agG>agA, p.R12253R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1293](MUC16, 19, 9068069, 9068069, SILENT, SNP, G, A, g.chr19:9068069G>A, -, c.19377C>T, c.(19375-19377)acC>acT, p.T6459T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1294](MUC16, 19, 9087697, 9087697, MISSENSE, SNP, G, A, g.chr19:9087697G>A, -, c.4118C>T, c.(4117-4119)tCa>tTa, p.S1373L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1295](MUC16, 19, 9090172, 9090172, MISSENSE, SNP, G, A, g.chr19:9090172G>A, -, c.1643C>T, c.(1642-1644)cCc>cTc, p.P548L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1296](MUC16, 19, 9049259, 9049259, MISSENSE, SNP, C, A, g.chr19:9049259C>A, -, c.32372G>T, c.(32371-32373)cGg>cTg, p.R10791L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1297](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1298](MUC16, 19, 9086891, 9086891, NONSENSE, SNP, C, A, g.chr19:9086891C>A, -, c.4924G>T, c.(4924-4926)Gga>Tga, p.G1642*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1299](MUC16, 19, 9088957, 9088957, MISSENSE, SNP, C, A, g.chr19:9088957C>A, -, c.2858G>T, c.(2857-2859)aGa>aTa, p.R953I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[129](MUC16, 19, 9088249, 9088249, MISSENSE, SNP, C, A, g.chr19:9088249C>A, -, c.3566G>T, c.(3565-3567)cGg>cTg, p.R1189L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[12](MUC16, 19, 9050244, 9050244, SPLICE_SITE, SNP, C, A, g.chr19:9050244C>A, -, c.e5+1G>T, c.e5-1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1300](MUC16, 19, 9045691, 9045691, SILENT, SNP, G, T, g.chr19:9045691G>T, -, c.35940C>A, c.(35938-35940)acC>acA, p.T11980T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1301](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1302](MUC16, 19, 9059581, 9059581, MISSENSE, SNP, C, A, g.chr19:9059581C>A, -, c.27865G>T, c.(27865-27867)Ggg>Tgg, p.G9289W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1303](MUC16, 19, 9061187, 9061187, SILENT, SNP, G, T, g.chr19:9061187G>T, -, c.26259C>A, c.(26257-26259)acC>acA, p.T8753T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1304](MUC16, 19, 9067092, 9067092, MISSENSE, SNP, G, T, g.chr19:9067092G>T, -, c.20354C>A, c.(20353-20355)cCt>cAt, p.P6785H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1305](MUC16, 19, 9088667, 9088667, NONSENSE, SNP, C, A, g.chr19:9088667C>A, -, c.3148G>T, c.(3148-3150)Gga>Tga, p.G1050*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1306](MUC16, 19, 9090379, 9090379, MISSENSE, SNP, G, T, g.chr19:9090379G>T, -, c.1436C>A, c.(1435-1437)cCa>cAa, p.P479Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1307](MUC16, 19, 9063486, 9063486, MISSENSE, SNP, G, A, g.chr19:9063486G>A, -, c.23960C>T, c.(23959-23961)tCc>tTc, p.S7987F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1308](MUC16, 19, 9064399, 9064399, MISSENSE, SNP, C, T, g.chr19:9064399C>T, -, c.23047G>A, c.(23047-23049)Gaa>Aaa, p.E7683K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1309](MUC16, 19, 9072101, 9072101, MISSENSE, SNP, C, A, g.chr19:9072101C>A, -, c.15345G>T, c.(15343-15345)aaG>aaT, p.K5115N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[130](MUC16, 19, 9091668, 9091668, SILENT, SNP, C, A, g.chr19:9091668C>A, -, c.147G>T, c.(145-147)gtG>gtT, p.V49V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1310](MUC16, 19, 9077425, 9077425, NONSENSE, SNP, C, A, g.chr19:9077425C>A, -, c.10021G>T, c.(10021-10023)Gga>Tga, p.G3341*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1311](MUC16, 19, 9067149, 9067149, MISSENSE, SNP, G, A, g.chr19:9067149G>A, -, c.20297C>T, c.(20296-20298)tCg>tTg, p.S6766L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1312](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1313](MUC16, 19, 9084604, 9084604, MISSENSE, SNP, G, T, g.chr19:9084604G>T, -, c.7211C>A, c.(7210-7212)tCc>tAc, p.S2404Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1314](MUC16, 19, 9085435, 9085435, NONSENSE, SNP, G, T, g.chr19:9085435G>T, -, c.6380C>A, c.(6379-6381)tCg>tAg, p.S2127*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1315](MUC16, 19, 9088960, 9088960, MISSENSE, SNP, T, C, g.chr19:9088960T>C, -, c.2855A>G, c.(2854-2856)aAt>aGt, p.N952S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1316](MUC16, 19, 9048458, 9048458, MISSENSE, SNP, G, A, g.chr19:9048458G>A, -, c.33173C>T, c.(33172-33174)cCa>cTa, p.P11058L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1317](MUC16, 19, 9062685, 9062685, NONSENSE, SNP, C, T, g.chr19:9062685C>T, -, c.24761G>A, c.(24760-24762)tGg>tAg, p.W8254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1318](MUC16, 19, 9066568, 9066568, MISSENSE, SNP, G, T, g.chr19:9066568G>T, -, c.20878C>A, c.(20878-20880)Caa>Aaa, p.Q6960K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1319](MUC16, 19, 9066772, 9066772, MISSENSE, SNP, C, T, g.chr19:9066772C>T, -, c.20674G>A, c.(20674-20676)Gaa>Aaa, p.E6892K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[131](MUC16, 19, 9060909, 9060909, MISSENSE, SNP, G, A, g.chr19:9060909G>A, -, c.26537C>T, c.(26536-26538)tCa>tTa, p.S8846L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1320](MUC16, 19, 9063374, 9063374, SILENT, SNP, G, T, g.chr19:9063374G>T, -, c.24072C>A, c.(24070-24072)acC>acA, p.T8024T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1321](MUC16, 19, 9074625, 9074625, MISSENSE, SNP, G, A, g.chr19:9074625G>A, -, c.12821C>T, c.(12820-12822)cCa>cTa, p.P4274L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1322](MUC16, 19, 9070154, 9070154, SILENT, SNP, A, C, g.chr19:9070154A>C, -, c.17292T>G, c.(17290-17292)acT>acG, p.T5764T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1323](MUC16, 19, 9083554, 9083554, MISSENSE, SNP, C, T, g.chr19:9083554C>T, -, c.8261G>A, c.(8260-8262)gGa>gAa, p.G2754E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1324](MUC16, 19, 9085264, 9085264, MISSENSE, SNP, G, A, g.chr19:9085264G>A, -, c.6551C>T, c.(6550-6552)tCc>tTc, p.S2184F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1325](MUC16, 19, 9089115, 9089115, SILENT, SNP, G, A, g.chr19:9089115G>A, -, c.2700C>T, c.(2698-2700)acC>acT, p.T900T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1326](MUC16, 19, 9063190, 9063190, MISSENSE, SNP, G, A, g.chr19:9063190G>A, -, c.24256C>T, c.(24256-24258)Cca>Tca, p.P8086S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1327](MUC16, 19, 9077652, 9077652, MISSENSE, SNP, C, T, g.chr19:9077652C>T, -, c.9794G>A, c.(9793-9795)gGa>gAa, p.G3265E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1328](MUC16, 19, 9086450, 9086450, MISSENSE, SNP, C, T, g.chr19:9086450C>T, -, c.5365G>A, c.(5365-5367)Gag>Aag, p.E1789K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1329](MUC16, 19, 9000512, 9000512, MISSENSE, SNP, C, A, g.chr19:9000512C>A, -, c.40472G>T, c.(40471-40473)cGg>cTg, p.R13491L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[132](MUC16, 19, 9069117, 9069117, MISSENSE, SNP, C, T, g.chr19:9069117C>T, -, c.18329G>A, c.(18328-18330)aGg>aAg, p.R6110K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1330](MUC16, 19, 9049612, 9049612, SILENT, SNP, G, A, g.chr19:9049612G>A, -, c.32019C>T, c.(32017-32019)tcC>tcT, p.S10673S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1331](MUC16, 19, 9059581, 9059581, MISSENSE, SNP, C, A, g.chr19:9059581C>A, -, c.27865G>T, c.(27865-27867)Ggg>Tgg, p.G9289W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1332](MUC16, 19, 9061495, 9061495, MISSENSE, SNP, C, A, g.chr19:9061495C>A, -, c.25951G>T, c.(25951-25953)Ggg>Tgg, p.G8651W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1333](MUC16, 19, 9061972, 9061972, MISSENSE, SNP, C, T, g.chr19:9061972C>T, -, c.25474G>A, c.(25474-25476)Gaa>Aaa, p.E8492K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1334](MUC16, 19, 9062585, 9062585, SILENT, SNP, C, T, g.chr19:9062585C>T, -, c.24861G>A, c.(24859-24861)gaG>gaA, p.E8287E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1335](MUC16, 19, 9082989, 9082989, MISSENSE, SNP, C, A, g.chr19:9082989C>A, -, c.8826G>T, c.(8824-8826)atG>atT, p.M2942I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1336](MUC16, 19, 9088886, 9088886, MISSENSE, SNP, C, A, g.chr19:9088886C>A, -, c.2929G>T, c.(2929-2931)Ggg>Tgg, p.G977W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1337](MUC16, 19, 9088980, 9088980, SILENT, SNP, C, A, g.chr19:9088980C>A, -, c.2835G>T, c.(2833-2835)acG>acT, p.T945T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1338](MUC16, 19, 9085550, 9085550, MISSENSE, SNP, C, T, g.chr19:9085550C>T, -, c.6265G>A, c.(6265-6267)Gaa>Aaa, p.E2089K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1339](MUC16, 19, 8976756, 8976756, MISSENSE, SNP, C, T, g.chr19:8976756C>T, -, c.42310G>A, c.(42310-42312)Ggg>Agg, p.G14104R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[133](MUC16, 19, 9085554, 9085554, SILENT, SNP, C, T, g.chr19:9085554C>T, -, c.6261G>A, c.(6259-6261)acG>acA, p.T2087T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1340](MUC16, 19, 9012505, 9012505, MISSENSE, SNP, C, A, g.chr19:9012505C>A, -, c.38701G>T, c.(38701-38703)Ggc>Tgc, p.G12901C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1341](MUC16, 19, 9017373, 9017373, MISSENSE, SNP, G, T, g.chr19:9017373G>T, -, c.37951C>A, c.(37951-37953)Ctg>Atg, p.L12651M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1342](MUC16, 19, 9056375, 9056375, SILENT, SNP, G, T, g.chr19:9056375G>T, -, c.31071C>A, c.(31069-31071)acC>acA, p.T10357T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1343](MUC16, 19, 9062025, 9062025, MISSENSE, SNP, G, T, g.chr19:9062025G>T, -, c.25421C>A, c.(25420-25422)tCt>tAt, p.S8474Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1344](MUC16, 19, 9063558, 9063558, MISSENSE, SNP, G, T, g.chr19:9063558G>T, -, c.23888C>A, c.(23887-23889)cCc>cAc, p.P7963H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1345](MUC16, 19, 9071920, 9071920, NONSENSE, SNP, C, A, g.chr19:9071920C>A, -, c.15526G>T, c.(15526-15528)Gag>Tag, p.E5176*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1346](MUC16, 19, 9072185, 9072185, MISSENSE, SNP, C, A, g.chr19:9072185C>A, -, c.15261G>T, c.(15259-15261)ttG>ttT, p.L5087F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1347](MUC16, 19, 9072790, 9072790, NONSENSE, SNP, C, A, g.chr19:9072790C>A, -, c.14656G>T, c.(14656-14658)Gag>Tag, p.E4886*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1348](MUC16, 19, 9076225, 9076225, MISSENSE, SNP, C, A, g.chr19:9076225C>A, -, c.11221G>T, c.(11221-11223)Ggg>Tgg, p.G3741W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1349](MUC16, 19, 9076829, 9076829, SILENT, SNP, G, A, g.chr19:9076829G>A, -, c.10617C>T, c.(10615-10617)tcC>tcT, p.S3539S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[134](MUC16, 19, 9091023, 9091023, SILENT, SNP, G, T, g.chr19:9091023G>T, -, c.792C>A, c.(790-792)ccC>ccA, p.P264P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1350](MUC16, 19, 9086779, 9086779, MISSENSE, SNP, C, A, g.chr19:9086779C>A, -, c.5036G>T, c.(5035-5037)gGg>gTg, p.G1679V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1351](MUC16, 19, 9087719, 9087719, NONSENSE, SNP, C, A, g.chr19:9087719C>A, -, c.4096G>T, c.(4096-4098)Gga>Tga, p.G1366*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1352](MUC16, 19, 9089342, 9089342, MISSENSE, SNP, C, A, g.chr19:9089342C>A, -, c.2473G>T, c.(2473-2475)Ggg>Tgg, p.G825W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1353](MUC16, 19, 9091124, 9091124, MISSENSE, SNP, C, A, g.chr19:9091124C>A, -, c.691G>T, c.(691-693)Ggg>Tgg, p.G231W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1354](MUC16, 19, 9076839, 9076839, MISSENSE, SNP, G, A, g.chr19:9076839G>A, -, c.10607C>T, c.(10606-10608)cCa>cTa, p.P3536L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1355](MUC16, 19, 9020013, 9020013, SILENT, SNP, G, T, g.chr19:9020013G>T, -, c.37482C>A, c.(37480-37482)acC>acA, p.T12494T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1356](MUC16, 19, 9072940, 9072940, MISSENSE, SNP, C, A, g.chr19:9072940C>A, -, c.14506G>T, c.(14506-14508)Ggg>Tgg, p.G4836W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1357](MUC16, 19, 9082454, 9082454, MISSENSE, SNP, G, T, g.chr19:9082454G>T, -, c.9361C>A, c.(9361-9363)Cca>Aca, p.P3121T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1358](MUC16, 19, 9050107, 9050107, SILENT, SNP, G, T, g.chr19:9050107G>T, -, c.31524C>A, c.(31522-31524)ccC>ccA, p.P10508P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1359](MUC16, 19, 9082453, 9082453, MISSENSE, SNP, G, T, g.chr19:9082453G>T, -, c.9362C>A, c.(9361-9363)cCa>cAa, p.P3121Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[135](MUC16, 19, 9060186, 9060186, MISSENSE, SNP, C, A, g.chr19:9060186C>A, -, c.27260G>T, c.(27259-27261)gGg>gTg, p.G9087V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1360](MUC16, 19, 9059164, 9059164, MISSENSE, SNP, C, T, g.chr19:9059164C>T, -, c.28282G>A, c.(28282-28284)Gaa>Aaa, p.E9428K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1361](MUC16, 19, 9066044, 9066044, SILENT, SNP, C, A, g.chr19:9066044C>A, -, c.21402G>T, c.(21400-21402)ccG>ccT, p.P7134P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1362](MUC16, 19, 9067557, 9067557, MISSENSE, SNP, C, A, g.chr19:9067557C>A, -, c.19889G>T, c.(19888-19890)aGg>aTg, p.R6630M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1363](MUC16, 19, 9073819, 9073819, MISSENSE, SNP, C, A, g.chr19:9073819C>A, -, c.13627G>T, c.(13627-13629)Ggg>Tgg, p.G4543W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1364](MUC16, 19, 9085554, 9085554, SILENT, SNP, C, A, g.chr19:9085554C>A, -, c.6261G>T, c.(6259-6261)acG>acT, p.T2087T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1365](MUC16, 19, 9060196, 9060196, MISSENSE, SNP, C, T, g.chr19:9060196C>T, -, c.27250G>A, c.(27250-27252)Ggt>Agt, p.G9084S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1366](MUC16, 19, 9072100, 9072100, MISSENSE, SNP, C, T, g.chr19:9072100C>T, -, c.15346G>A, c.(15346-15348)Gaa>Aaa, p.E5116K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1367](MUC16, 19, 9089213, 9089213, MISSENSE, SNP, C, T, g.chr19:9089213C>T, -, c.2602G>A, c.(2602-2604)Gaa>Aaa, p.E868K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1368](MUC16, 19, 9028320, 9028320, MISSENSE, SNP, C, T, g.chr19:9028320C>T, -, c.36472G>A, c.(36472-36474)Gac>Aac, p.D12158N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1369](MUC16, 19, 9067049, 9067049, SILENT, SNP, G, T, g.chr19:9067049G>T, -, c.20397C>A, c.(20395-20397)acC>acA, p.T6799T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[136](MUC16, 19, 9065721, 9065721, MISSENSE, SNP, G, A, g.chr19:9065721G>A, -, c.21725C>T, c.(21724-21726)tCc>tTc, p.S7242F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1370](MUC16, 19, 9069926, 9069926, SILENT, SNP, G, A, g.chr19:9069926G>A, -, c.17520C>T, c.(17518-17520)tcC>tcT, p.S5840S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1371](MUC16, 19, 9045922, 9045922, SILENT, SNP, G, A, g.chr19:9045922G>A, -, c.35709C>T, c.(35707-35709)tcC>tcT, p.S11903S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1372](MUC16, 19, 9054252, 9054252, MISSENSE, SNP, G, A, g.chr19:9054252G>A, -, c.31370C>T, c.(31369-31371)tCg>tTg, p.S10457L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1373](MUC16, 19, 9057895, 9057895, MISSENSE, SNP, C, T, g.chr19:9057895C>T, -, c.29551G>A, c.(29551-29553)Gat>Aat, p.D9851N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1374](MUC16, 19, 9058191, 9058191, MISSENSE, SNP, G, A, g.chr19:9058191G>A, -, c.29255C>T, c.(29254-29256)tCc>tTc, p.S9752F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1375](MUC16, 19, 9063438, 9063438, MISSENSE, SNP, G, A, g.chr19:9063438G>A, -, c.24008C>T, c.(24007-24009)tCa>tTa, p.S8003L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1376](MUC16, 19, 9065406, 9065406, MISSENSE, SNP, G, A, g.chr19:9065406G>A, -, c.22040C>T, c.(22039-22041)aCc>aTc, p.T7347I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1377](MUC16, 19, 9090379, 9090379, MISSENSE, SNP, G, T, g.chr19:9090379G>T, -, c.1436C>A, c.(1435-1437)cCa>cAa, p.P479Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1378](MUC16, 19, 9010979, 9010979, MISSENSE, SNP, G, A, g.chr19:9010979G>A, -, c.38939C>T, c.(38938-38940)cCc>cTc, p.P12980L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1379](MUC16, 19, 9014191, 9014191, SILENT, SNP, C, T, g.chr19:9014191C>T, -, c.38457G>A, c.(38455-38457)caG>caA, p.Q12819Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[137](MUC16, 19, 9066519, 9066519, MISSENSE, SNP, G, A, g.chr19:9066519G>A, -, c.20927C>T, c.(20926-20928)cCc>cTc, p.P6976L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1380](MUC16, 19, 9058180, 9058180, MISSENSE, SNP, G, A, g.chr19:9058180G>A, -, c.29266C>T, c.(29266-29268)Cct>Tct, p.P9756S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1381](MUC16, 19, 9059574, 9059574, MISSENSE, SNP, A, C, g.chr19:9059574A>C, -, c.27872T>G, c.(27871-27873)aTg>aGg, p.M9291R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1382](MUC16, 19, 9060272, 9060272, SILENT, SNP, G, A, g.chr19:9060272G>A, -, c.27174C>T, c.(27172-27174)tcC>tcT, p.S9058S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1383](MUC16, 19, 9064480, 9064480, MISSENSE, SNP, C, T, g.chr19:9064480C>T, -, c.22966G>A, c.(22966-22968)Gga>Aga, p.G7656R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1384](MUC16, 19, 9072321, 9072321, MISSENSE, SNP, G, A, g.chr19:9072321G>A, -, c.15125C>T, c.(15124-15126)tCc>tTc, p.S5042F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1385](MUC16, 19, 9083313, 9083313, SILENT, SNP, C, T, g.chr19:9083313C>T, -, c.8502G>A, c.(8500-8502)acG>acA, p.T2834T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1386](MUC16, 19, 8966751, 8966751, MISSENSE, SNP, C, T, g.chr19:8966751C>T, -, c.43202G>A, c.(43201-43203)aGa>aAa, p.R14401K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1387](MUC16, 19, 9065265, 9065265, MISSENSE, SNP, G, A, g.chr19:9065265G>A, -, c.22181C>T, c.(22180-22182)tCc>tTc, p.S7394F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1388](MUC16, 19, 9066116, 9066116, SILENT, SNP, G, A, g.chr19:9066116G>A, -, c.21330C>T, c.(21328-21330)ccC>ccT, p.P7110P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1389](MUC16, 19, 9071280, 9071280, MISSENSE, SNP, G, A, g.chr19:9071280G>A, -, c.16166C>T, c.(16165-16167)aCc>aTc, p.T5389I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[138](MUC16, 19, 9072723, 9072723, MISSENSE, SNP, G, A, g.chr19:9072723G>A, -, c.14723C>T, c.(14722-14724)tCg>tTg, p.S4908L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1390](MUC16, 19, 9074222, 9074222, SILENT, SNP, G, A, g.chr19:9074222G>A, -, c.13224C>T, c.(13222-13224)acC>acT, p.T4408T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1391](MUC16, 19, 9062037, 9062037, MISSENSE, SNP, G, A, g.chr19:9062037G>A, -, c.25409C>T, c.(25408-25410)tCa>tTa, p.S8470L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1392](MUC16, 19, 9062445, 9062445, MISSENSE, SNP, G, A, g.chr19:9062445G>A, -, c.25001C>T, c.(25000-25002)aCc>aTc, p.T8334I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1393](MUC16, 19, 9068203, 9068203, MISSENSE, SNP, C, T, g.chr19:9068203C>T, -, c.19243G>A, c.(19243-19245)Gaa>Aaa, p.E6415K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1394](MUC16, 19, 9075684, 9075684, MISSENSE, SNP, G, A, g.chr19:9075684G>A, -, c.11762C>T, c.(11761-11763)tCc>tTc, p.S3921F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1395](MUC16, 19, 9088237, 9088237, MISSENSE, SNP, G, A, g.chr19:9088237G>A, -, c.3578C>T, c.(3577-3579)cCc>cTc, p.P1193L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1396](MUC16, 19, 9046600, 9046600, SILENT, SNP, C, T, g.chr19:9046600C>T, -, c.35031G>A, c.(35029-35031)cgG>cgA, p.R11677R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1397](MUC16, 19, 9011382, 9011382, MISSENSE, SNP, T, A, g.chr19:9011382T>A, -, c.38851A>T, c.(38851-38853)Acc>Tcc, p.T12951S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1398](MUC16, 19, 9056805, 9056805, NONSENSE, SNP, C, T, g.chr19:9056805C>T, -, c.30641G>A, c.(30640-30642)tGg>tAg, p.W10214*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1399](MUC16, 19, 9057632, 9057632, SILENT, SNP, C, T, g.chr19:9057632C>T, -, c.29814G>A, c.(29812-29814)gtG>gtA, p.V9938V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[139](MUC16, 19, 9087495, 9087495, SILENT, SNP, C, T, g.chr19:9087495C>T, -, c.4320G>A, c.(4318-4320)ggG>ggA, p.G1440G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[13](MUC16, 19, 9057555, 9057555, MISSENSE, SNP, C, A, g.chr19:9057555C>A, -, c.29891G>T, c.(29890-29892)gGg>gTg, p.G9964V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1400](MUC16, 19, 9066570, 9066570, MISSENSE, SNP, G, A, g.chr19:9066570G>A, -, c.20876C>T, c.(20875-20877)tCc>tTc, p.S6959F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1401](MUC16, 19, 8993398, 8993398, SILENT, SNP, C, T, g.chr19:8993398C>T, -, c.41691G>A, c.(41689-41691)ctG>ctA, p.L13897L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1402](MUC16, 19, 9083555, 9083555, NONSENSE, SNP, C, A, g.chr19:9083555C>A, -, c.8260G>T, c.(8260-8262)Gga>Tga, p.G2754*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1403](MUC16, 19, 8969339, 8969339, SILENT, SNP, G, A, g.chr19:8969339G>A, -, c.43005C>T, c.(43003-43005)tcC>tcT, p.S14335S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1404](MUC16, 19, 9019291, 9019291, SILENT, SNP, G, A, g.chr19:9019291G>A, -, c.37596C>T, c.(37594-37596)tcC>tcT, p.S12532S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1405](MUC16, 19, 9048053, 9048053, MISSENSE, SNP, G, A, g.chr19:9048053G>A, -, c.33578C>T, c.(33577-33579)tCa>tTa, p.S11193L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1406](MUC16, 19, 9070674, 9070674, MISSENSE, SNP, C, T, g.chr19:9070674C>T, -, c.16772G>A, c.(16771-16773)gGa>gAa, p.G5591E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1407](MUC16, 19, 8994484, 8994484, MISSENSE, SNP, C, A, g.chr19:8994484C>A, -, c.41408G>T, c.(41407-41409)cGg>cTg, p.R13803L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1408](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1409](MUC16, 19, 9063573, 9063573, MISSENSE, SNP, G, A, g.chr19:9063573G>A, -, c.23873C>T, c.(23872-23874)tCa>tTa, p.S7958L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[140](MUC16, 19, 9089598, 9089598, SILENT, SNP, C, T, g.chr19:9089598C>T, -, c.2217G>A, c.(2215-2217)gcG>gcA, p.A739A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1410](MUC16, 19, 9068063, 9068063, SILENT, SNP, G, T, g.chr19:9068063G>T, -, c.19383C>A, c.(19381-19383)acC>acA, p.T6461T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1411](MUC16, 19, 9071306, 9071306, MISSENSE, SNP, C, A, g.chr19:9071306C>A, -, c.16140G>T, c.(16138-16140)ttG>ttT, p.L5380F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1412](MUC16, 19, 9072407, 9072407, MISSENSE, SNP, C, A, g.chr19:9072407C>A, -, c.15039G>T, c.(15037-15039)ttG>ttT, p.L5013F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1413](MUC16, 19, 9086595, 9086595, SILENT, SNP, A, G, g.chr19:9086595A>G, -, c.5220T>C, c.(5218-5220)gcT>gcC, p.A1740A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1414](MUC16, 19, 9087369, 9087369, SILENT, SNP, G, T, g.chr19:9087369G>T, -, c.4446C>A, c.(4444-4446)ccC>ccA, p.P1482P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1415](MUC16, 19, 9065405, 9065405, SILENT, SNP, G, A, g.chr19:9065405G>A, -, c.22041C>T, c.(22039-22041)acC>acT, p.T7347T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1416](MUC16, 19, 9066554, 9066554, MISSENSE, SNP, A, T, g.chr19:9066554A>T, -, c.20892T>A, c.(20890-20892)ttT>ttA, p.F6964L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1417](MUC16, 19, 9074082, 9074082, MISSENSE, SNP, G, A, g.chr19:9074082G>A, -, c.13364C>T, c.(13363-13365)tCc>tTc, p.S4455F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1418](MUC16, 19, 9047481, 9047481, MISSENSE, SNP, C, A, g.chr19:9047481C>A, -, c.34150G>T, c.(34150-34152)Ggg>Tgg, p.G11384W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1419](MUC16, 19, 9058065, 9058065, MISSENSE, SNP, G, T, g.chr19:9058065G>T, -, c.29381C>A, c.(29380-29382)cCg>cAg, p.P9794Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[141](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1420](MUC16, 19, 9058976, 9058976, SILENT, SNP, G, T, g.chr19:9058976G>T, -, c.28470C>A, c.(28468-28470)ccC>ccA, p.P9490P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1421](MUC16, 19, 9067725, 9067725, MISSENSE, SNP, G, T, g.chr19:9067725G>T, -, c.19721C>A, c.(19720-19722)cCg>cAg, p.P6574Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1422](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1423](MUC16, 19, 9072517, 9072517, MISSENSE, SNP, G, T, g.chr19:9072517G>T, -, c.14929C>A, c.(14929-14931)Caa>Aaa, p.Q4977K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1424](MUC16, 19, 9077247, 9077247, MISSENSE, SNP, G, T, g.chr19:9077247G>T, -, c.10199C>A, c.(10198-10200)cCc>cAc, p.P3400H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1425](MUC16, 19, 9085484, 9085484, MISSENSE, SNP, G, T, g.chr19:9085484G>T, -, c.6331C>A, c.(6331-6333)Cat>Aat, p.H2111N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1426](MUC16, 19, 9086908, 9086908, MISSENSE, SNP, G, T, g.chr19:9086908G>T, -, c.4907C>A, c.(4906-4908)aCa>aAa, p.T1636K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1427](MUC16, 19, 9087062, 9087062, MISSENSE, SNP, G, T, g.chr19:9087062G>T, -, c.4753C>A, c.(4753-4755)Cat>Aat, p.H1585N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1428](MUC16, 19, 9090445, 9090445, MISSENSE, SNP, G, T, g.chr19:9090445G>T, -, c.1370C>A, c.(1369-1371)cCc>cAc, p.P457H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1429](MUC16, 19, 9091196, 9091196, MISSENSE, SNP, G, T, g.chr19:9091196G>T, -, c.619C>A, c.(619-621)Cca>Aca, p.P207T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[142](MUC16, 19, 9064474, 9064474, MISSENSE, SNP, G, A, g.chr19:9064474G>A, -, c.22972C>T, c.(22972-22974)Cca>Tca, p.P7658S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1430](MUC16, 19, 9082412, 9082412, MISSENSE, SNP, C, T, g.chr19:9082412C>T, -, c.9403G>A, c.(9403-9405)Gcc>Acc, p.A3135T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1431](MUC16, 19, 9088132, 9088132, MISSENSE, SNP, G, A, g.chr19:9088132G>A, -, c.3683C>T, c.(3682-3684)tCa>tTa, p.S1228L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1432](MUC16, 19, 9090539, 9090539, MISSENSE, SNP, C, T, g.chr19:9090539C>T, -, c.1276G>A, c.(1276-1278)Gga>Aga, p.G426R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1433](MUC16, 19, 9046525, 9046525, SILENT, SNP, G, T, g.chr19:9046525G>T, -, c.35106C>A, c.(35104-35106)tcC>tcA, p.S11702S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1434](MUC16, 19, 9048722, 9048722, MISSENSE, SNP, C, T, g.chr19:9048722C>T, -, c.32909G>A, c.(32908-32910)gGg>gAg, p.G10970E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1435](MUC16, 19, 9049710, 9049710, MISSENSE, SNP, G, A, g.chr19:9049710G>A, -, c.31921C>T, c.(31921-31923)Cca>Tca, p.P10641S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1436](MUC16, 19, 9049823, 9049823, MISSENSE, SNP, G, A, g.chr19:9049823G>A, -, c.31808C>T, c.(31807-31809)cCt>cTt, p.P10603L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1437](MUC16, 19, 9064313, 9064313, SILENT, SNP, G, A, g.chr19:9064313G>A, -, c.23133C>T, c.(23131-23133)ccC>ccT, p.P7711P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1438](MUC16, 19, 9067834, 9067834, MISSENSE, SNP, G, A, g.chr19:9067834G>A, -, c.19612C>T, c.(19612-19614)Cct>Tct, p.P6538S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1439](MUC16, 19, 9071324, 9071324, SILENT, SNP, C, T, g.chr19:9071324C>T, -, c.16122G>A, c.(16120-16122)gtG>gtA, p.V5374V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[143](MUC16, 19, 9083586, 9083586, SILENT, SNP, C, T, g.chr19:9083586C>T, -, c.8229G>A, c.(8227-8229)tcG>tcA, p.S2743S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1440](MUC16, 19, 9072352, 9072352, MISSENSE, SNP, G, A, g.chr19:9072352G>A, -, c.15094C>T, c.(15094-15096)Ccc>Tcc, p.P5032S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1441](MUC16, 19, 9073021, 9073021, MISSENSE, SNP, C, T, g.chr19:9073021C>T, -, c.14425G>A, c.(14425-14427)Gat>Aat, p.D4809N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1442](MUC16, 19, 9074696, 9074696, SILENT, SNP, C, T, g.chr19:9074696C>T, -, c.12750G>A, c.(12748-12750)acG>acA, p.T4250T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1443](MUC16, 19, 9049996, 9049996, SILENT, SNP, C, A, g.chr19:9049996C>A, -, c.31635G>T, c.(31633-31635)ctG>ctT, p.L10545L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1444](MUC16, 19, 9063158, 9063158, SILENT, SNP, C, A, g.chr19:9063158C>A, -, c.24288G>T, c.(24286-24288)acG>acT, p.T8096T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1445](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1446](MUC16, 19, 9077392, 9077392, NONSENSE, SNP, C, A, g.chr19:9077392C>A, -, c.10054G>T, c.(10054-10056)Gga>Tga, p.G3352*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1447](MUC16, 19, 9077726, 9077726, SILENT, SNP, G, A, g.chr19:9077726G>A, -, c.9720C>T, c.(9718-9720)acC>acT, p.T3240T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[1448](MUC16, 19, 9086950, 9086950, MISSENSE, SNP, G, T, g.chr19:9086950G>T, -, c.4865C>A, c.(4864-4866)cCa>cAa, p.P1622Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1449](MUC16, 19, 9087199, 9087199, MISSENSE, SNP, G, T, g.chr19:9087199G>T, -, c.4616C>A, c.(4615-4617)cCa>cAa, p.P1539Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[144](MUC16, 19, 9086812, 9086812, MISSENSE, SNP, C, T, g.chr19:9086812C>T, -, c.5003G>A, c.(5002-5004)aGa>aAa, p.R1668K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1450](MUC16, 19, 9091107, 9091107, SILENT, SNP, G, T, g.chr19:9091107G>T, -, c.708C>A, c.(706-708)tcC>tcA, p.S236S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1451](MUC16, 19, 9006363, 9006363, MISSENSE, SNP, A, G, g.chr19:9006363A>G, -, c.39655T>C, c.(39655-39657)Tgc>Cgc, p.C13219R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1452](MUC16, 19, 9049904, 9049904, MISSENSE, SNP, C, A, g.chr19:9049904C>A, -, c.31727G>T, c.(31726-31728)gGg>gTg, p.G10576V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1453](MUC16, 19, 9060067, 9060067, MISSENSE, SNP, G, A, g.chr19:9060067G>A, -, c.27379C>T, c.(27379-27381)Cct>Tct, p.P9127S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1454](MUC16, 19, 9060965, 9060965, SILENT, SNP, C, T, g.chr19:9060965C>T, -, c.26481G>A, c.(26479-26481)ggG>ggA, p.G8827G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1455](MUC16, 19, 9066420, 9066420, MISSENSE, SNP, G, A, g.chr19:9066420G>A, -, c.21026C>T, c.(21025-21027)tCc>tTc, p.S7009F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1456](MUC16, 19, 9071068, 9071068, MISSENSE, SNP, C, A, g.chr19:9071068C>A, -, c.16378G>T, c.(16378-16380)Ggg>Tgg, p.G5460W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1457](MUC16, 19, 9075484, 9075484, MISSENSE, SNP, C, T, g.chr19:9075484C>T, -, c.11962G>A, c.(11962-11964)Gaa>Aaa, p.E3988K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1458](MUC16, 19, 9088939, 9088939, MISSENSE, SNP, G, A, g.chr19:9088939G>A, -, c.2876C>T, c.(2875-2877)tCt>tTt, p.S959F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1459](MUC16, 19, 9065752, 9065752, NONSENSE, SNP, C, A, g.chr19:9065752C>A, -, c.21694G>T, c.(21694-21696)Gag>Tag, p.E7232*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[145](MUC16, 19, 9065063, 9065063, SILENT, SNP, G, T, g.chr19:9065063G>T, -, c.22383C>A, c.(22381-22383)acC>acA, p.T7461T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1460](MUC16, 19, 9088147, 9088147, MISSENSE, SNP, G, T, g.chr19:9088147G>T, -, c.3668C>A, c.(3667-3669)cCa>cAa, p.P1223Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1461](MUC16, 19, 9071371, 9071371, MISSENSE, SNP, G, T, g.chr19:9071371G>T, -, c.16075C>A, c.(16075-16077)Ccc>Acc, p.P5359T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1462](MUC16, 19, 9063923, 9063923, SILENT, SNP, C, T, g.chr19:9063923C>T, -, c.23523G>A, c.(23521-23523)ggG>ggA, p.G7841G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1463](MUC16, 19, 9069895, 9069895, MISSENSE, SNP, G, A, g.chr19:9069895G>A, -, c.17551C>T, c.(17551-17553)Cct>Tct, p.P5851S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1464](MUC16, 19, 9059294, 9059294, MISSENSE, SNP, C, A, g.chr19:9059294C>A, -, c.28152G>T, c.(28150-28152)ttG>ttT, p.L9384F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1465](MUC16, 19, 9077341, 9077341, MISSENSE, SNP, G, T, g.chr19:9077341G>T, -, c.10105C>A, c.(10105-10107)Ctt>Att, p.L3369I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1466](MUC16, 19, 9028301, 9028301, MISSENSE, SNP, C, A, g.chr19:9028301C>A, -, c.36491G>T, c.(36490-36492)tGg>tTg, p.W12164L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1467](MUC16, 19, 9049048, 9049048, SILENT, SNP, G, T, g.chr19:9049048G>T, -, c.32583C>A, c.(32581-32583)tcC>tcA, p.S10861S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1468](MUC16, 19, 9057555, 9057555, MISSENSE, SNP, C, A, g.chr19:9057555C>A, -, c.29891G>T, c.(29890-29892)gGg>gTg, p.G9964V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1469](MUC16, 19, 9059581, 9059581, MISSENSE, SNP, C, A, g.chr19:9059581C>A, -, c.27865G>T, c.(27865-27867)Ggg>Tgg, p.G9289W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[146](MUC16, 19, 9065141, 9065141, MISSENSE, SNP, C, A, g.chr19:9065141C>A, -, c.22305G>T, c.(22303-22305)gaG>gaT, p.E7435D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1470](MUC16, 19, 9062458, 9062458, MISSENSE, SNP, G, T, g.chr19:9062458G>T, -, c.24988C>A, c.(24988-24990)Cat>Aat, p.H8330N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1471](MUC16, 19, 9065700, 9065700, MISSENSE, SNP, C, A, g.chr19:9065700C>A, -, c.21746G>T, c.(21745-21747)aGg>aTg, p.R7249M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1472](MUC16, 19, 9066751, 9066751, MISSENSE, SNP, C, A, g.chr19:9066751C>A, -, c.20695G>T, c.(20695-20697)Ggg>Tgg, p.G6899W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1473](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1474](MUC16, 19, 9071171, 9071171, SILENT, SNP, G, T, g.chr19:9071171G>T, -, c.16275C>A, c.(16273-16275)acC>acA, p.T5425T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1475](MUC16, 19, 9090379, 9090379, MISSENSE, SNP, G, T, g.chr19:9090379G>T, -, c.1436C>A, c.(1435-1437)cCa>cAa, p.P479Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1476](MUC16, 19, 9049258, 9049258, SILENT, SNP, C, T, g.chr19:9049258C>T, -, c.32373G>A, c.(32371-32373)cgG>cgA, p.R10791R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1477](MUC16, 19, 9059045, 9059045, SILENT, SNP, G, A, g.chr19:9059045G>A, -, c.28401C>T, c.(28399-28401)ttC>ttT, p.F9467F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1478](MUC16, 19, 9060492, 9060492, MISSENSE, SNP, G, A, g.chr19:9060492G>A, -, c.26954C>T, c.(26953-26955)gCt>gTt, p.A8985V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1479](MUC16, 19, 9060867, 9060867, MISSENSE, SNP, G, A, g.chr19:9060867G>A, -, c.26579C>T, c.(26578-26580)tCt>tTt, p.S8860F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[147](MUC16, 19, 9087062, 9087062, MISSENSE, SNP, G, T, g.chr19:9087062G>T, -, c.4753C>A, c.(4753-4755)Cat>Aat, p.H1585N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1480](MUC16, 19, 9061543, 9061543, MISSENSE, SNP, C, T, g.chr19:9061543C>T, -, c.25903G>A, c.(25903-25905)Gat>Aat, p.D8635N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1481](MUC16, 19, 9062833, 9062833, MISSENSE, SNP, C, T, g.chr19:9062833C>T, -, c.24613G>A, c.(24613-24615)Gat>Aat, p.D8205N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1482](MUC16, 19, 9066587, 9066587, SILENT, SNP, C, T, g.chr19:9066587C>T, -, c.20859G>A, c.(20857-20859)ctG>ctA, p.L6953L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1483](MUC16, 19, 9068506, 9068506, MISSENSE, SNP, C, T, g.chr19:9068506C>T, -, c.18940G>A, c.(18940-18942)Gaa>Aaa, p.E6314K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.100s |
passed |
| testCreateFuncotations[1484](MUC16, 19, 9077116, 9077116, MISSENSE, SNP, G, A, g.chr19:9077116G>A, -, c.10330C>T, c.(10330-10332)Cct>Tct, p.P3444S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1485](MUC16, 19, 9077817, 9077817, MISSENSE, SNP, C, T, g.chr19:9077817C>T, -, c.9629G>A, c.(9628-9630)aGc>aAc, p.S3210N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1486](MUC16, 19, 9082689, 9082689, SILENT, SNP, G, A, g.chr19:9082689G>A, -, c.9126C>T, c.(9124-9126)ttC>ttT, p.F3042F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1487](MUC16, 19, 9083324, 9083324, MISSENSE, SNP, C, T, g.chr19:9083324C>T, -, c.8491G>A, c.(8491-8493)Gaa>Aaa, p.E2831K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1488](MUC16, 19, 9086712, 9086712, SILENT, SNP, G, A, g.chr19:9086712G>A, -, c.5103C>T, c.(5101-5103)tcC>tcT, p.S1701S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1489](MUC16, 19, 9090331, 9090331, MISSENSE, SNP, G, A, g.chr19:9090331G>A, -, c.1484C>T, c.(1483-1485)tCc>tTc, p.S495F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[148](MUC16, 19, 9087964, 9087964, MISSENSE, SNP, G, T, g.chr19:9087964G>T, -, c.3851C>A, c.(3850-3852)cCc>cAc, p.P1284H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1490](MUC16, 19, 8997412, 8997412, SPLICE_SITE, SNP, C, A, g.chr19:8997412C>A, -, c.41010G>T, c.(41008-41010)ctG>ctT, p.L13670L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1491](MUC16, 19, 9061904, 9061904, SILENT, SNP, G, T, g.chr19:9061904G>T, -, c.25542C>A, c.(25540-25542)acC>acA, p.T8514T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1492](MUC16, 19, 9065795, 9065795, SILENT, SNP, G, T, g.chr19:9065795G>T, -, c.21651C>A, c.(21649-21651)acC>acA, p.T7217T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1493](MUC16, 19, 9085057, 9085057, MISSENSE, SNP, G, A, g.chr19:9085057G>A, -, c.6758C>T, c.(6757-6759)tCc>tTc, p.S2253F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1494](MUC16, 19, 8997482, 8997482, MISSENSE, SNP, C, A, g.chr19:8997482C>A, -, c.40940G>T, c.(40939-40941)cGg>cTg, p.R13647L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1495](MUC16, 19, 9017423, 9017423, MISSENSE, SNP, C, A, g.chr19:9017423C>A, -, c.37901G>T, c.(37900-37902)tGg>tTg, p.W12634L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1496](MUC16, 19, 9047545, 9047545, SILENT, SNP, G, T, g.chr19:9047545G>T, -, c.34086C>A, c.(34084-34086)ccC>ccA, p.P11362P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1497](MUC16, 19, 9049996, 9049996, SILENT, SNP, C, A, g.chr19:9049996C>A, -, c.31635G>T, c.(31633-31635)ctG>ctT, p.L10545L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1498](MUC16, 19, 9065721, 9065721, MISSENSE, SNP, G, A, g.chr19:9065721G>A, -, c.21725C>T, c.(21724-21726)tCc>tTc, p.S7242F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1499](MUC16, 19, 9066676, 9066676, MISSENSE, SNP, C, A, g.chr19:9066676C>A, -, c.20770G>T, c.(20770-20772)Ggg>Tgg, p.G6924W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[149](MUC16, 19, 9091494, 9091494, SILENT, SNP, G, T, g.chr19:9091494G>T, -, c.321C>A, c.(319-321)ccC>ccA, p.P107P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[14](MUC16, 19, 9064688, 9064688, SILENT, SNP, G, T, g.chr19:9064688G>T, -, c.22758C>A, c.(22756-22758)tcC>tcA, p.S7586S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1500](MUC16, 19, 9068061, 9068061, MISSENSE, SNP, C, A, g.chr19:9068061C>A, -, c.19385G>T, c.(19384-19386)tGg>tTg, p.W6462L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1501](MUC16, 19, 9074237, 9074237, SILENT, SNP, G, T, g.chr19:9074237G>T, -, c.13209C>A, c.(13207-13209)ctC>ctA, p.L4403L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1502](MUC16, 19, 9082503, 9082503, MISSENSE, SNP, C, A, g.chr19:9082503C>A, -, c.9312G>T, c.(9310-9312)gaG>gaT, p.E3104D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1503](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1504](MUC16, 19, 9089282, 9089282, NONSENSE, SNP, C, A, g.chr19:9089282C>A, -, c.2533G>T, c.(2533-2535)Gga>Tga, p.G845*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1505](MUC16, 19, 9050137, 9050137, SILENT, SNP, G, A, g.chr19:9050137G>A, -, c.31494C>T, c.(31492-31494)gtC>gtT, p.V10498V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1506](MUC16, 19, 9062601, 9062601, MISSENSE, SNP, G, A, g.chr19:9062601G>A, -, c.24845C>T, c.(24844-24846)tCc>tTc, p.S8282F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1507](MUC16, 19, 9064916, 9064916, SILENT, SNP, G, T, g.chr19:9064916G>T, -, c.22530C>A, c.(22528-22530)acC>acA, p.T7510T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1508](MUC16, 19, 9069570, 9069570, MISSENSE, SNP, G, A, g.chr19:9069570G>A, -, c.17876C>T, c.(17875-17877)tCc>tTc, p.S5959F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1509](MUC16, 19, 9070578, 9070578, MISSENSE, SNP, G, A, g.chr19:9070578G>A, -, c.16868C>T, c.(16867-16869)cCc>cTc, p.P5623L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[150](MUC16, 19, 9066676, 9066676, MISSENSE, SNP, C, A, g.chr19:9066676C>A, -, c.20770G>T, c.(20770-20772)Ggg>Tgg, p.G6924W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1510](MUC16, 19, 9085435, 9085435, MISSENSE, SNP, G, A, g.chr19:9085435G>A, -, c.6380C>T, c.(6379-6381)tCg>tTg, p.S2127L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1511](MUC16, 19, 9061109, 9061109, SILENT, SNP, C, T, g.chr19:9061109C>T, -, c.26337G>A, c.(26335-26337)acG>acA, p.T8779T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1512](MUC16, 19, 9069754, 9069754, MISSENSE, SNP, G, A, g.chr19:9069754G>A, -, c.17692C>T, c.(17692-17694)Cca>Tca, p.P5898S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1513](MUC16, 19, 9072816, 9072816, MISSENSE, SNP, G, T, g.chr19:9072816G>T, -, c.14630C>A, c.(14629-14631)cCt>cAt, p.P4877H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1514](MUC16, 19, 9076887, 9076887, MISSENSE, SNP, G, A, g.chr19:9076887G>A, -, c.10559C>T, c.(10558-10560)tCa>tTa, p.S3520L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1515](MUC16, 19, 9087026, 9087026, MISSENSE, SNP, C, A, g.chr19:9087026C>A, -, c.4789G>T, c.(4789-4791)Ggg>Tgg, p.G1597W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1516](MUC16, 19, 9091259, 9091259, MISSENSE, SNP, G, A, g.chr19:9091259G>A, -, c.556C>T, c.(556-558)Cct>Tct, p.P186S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1517](MUC16, 19, 9017459, 9017459, MISSENSE, SNP, G, T, g.chr19:9017459G>T, -, c.37865C>A, c.(37864-37866)cCc>cAc, p.P12622H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1518](MUC16, 19, 9060617, 9060617, MISSENSE, SNP, C, A, g.chr19:9060617C>A, -, c.26829G>T, c.(26827-26829)atG>atT, p.M8943I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1519](MUC16, 19, 9077276, 9077276, SILENT, SNP, G, T, g.chr19:9077276G>T, -, c.10170C>A, c.(10168-10170)acC>acA, p.T3390T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[151](MUC16, 19, 9072940, 9072940, MISSENSE, SNP, C, A, g.chr19:9072940C>A, -, c.14506G>T, c.(14506-14508)Ggg>Tgg, p.G4836W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1520](MUC16, 19, 9089934, 9089934, SILENT, SNP, G, A, g.chr19:9089934G>A, -, c.1881C>T, c.(1879-1881)ctC>ctT, p.L627L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1521](MUC16, 19, 9047181, 9047181, MISSENSE, SNP, C, T, g.chr19:9047181C>T, -, c.34450G>A, c.(34450-34452)Gaa>Aaa, p.E11484K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1522](MUC16, 19, 9071825, 9071825, SILENT, SNP, T, G, g.chr19:9071825T>G, -, c.15621A>C, c.(15619-15621)acA>acC, p.T5207T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1523](MUC16, 19, 9088068, 9088068, SILENT, SNP, G, T, g.chr19:9088068G>T, -, c.3747C>A, c.(3745-3747)ccC>ccA, p.P1249P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1524](MUC16, 19, 9075414, 9075414, MISSENSE, SNP, G, A, g.chr19:9075414G>A, -, c.12032C>T, c.(12031-12033)tCc>tTc, p.S4011F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1525](MUC16, 19, 9048071, 9048071, MISSENSE, SNP, G, A, g.chr19:9048071G>A, -, c.33560C>T, c.(33559-33561)tCt>tTt, p.S11187F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1526](MUC16, 19, 9049971, 9049971, MISSENSE, SNP, G, A, g.chr19:9049971G>A, -, c.31660C>T, c.(31660-31662)Ccc>Tcc, p.P10554S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1527](MUC16, 19, 9070705, 9070705, MISSENSE, SNP, G, A, g.chr19:9070705G>A, -, c.16741C>T, c.(16741-16743)Ccc>Tcc, p.P5581S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1528](MUC16, 19, 9065042, 9065042, SILENT, SNP, C, A, g.chr19:9065042C>A, -, c.22404G>T, c.(22402-22404)acG>acT, p.T7468T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1529](MUC16, 19, 9047536, 9047536, SILENT, SNP, G, A, g.chr19:9047536G>A, -, c.34095C>T, c.(34093-34095)acC>acT, p.T11365T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[152](MUC16, 19, 9086131, 9086131, MISSENSE, SNP, G, A, g.chr19:9086131G>A, -, c.5684C>T, c.(5683-5685)tCc>tTc, p.S1895F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1530](MUC16, 19, 9065829, 9065829, MISSENSE, SNP, G, A, g.chr19:9065829G>A, -, c.21617C>T, c.(21616-21618)tCc>tTc, p.S7206F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1531](MUC16, 19, 9069395, 9069395, SILENT, SNP, C, T, g.chr19:9069395C>T, -, c.18051G>A, c.(18049-18051)ggG>ggA, p.G6017G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1532](MUC16, 19, 9076958, 9076958, SILENT, SNP, C, T, g.chr19:9076958C>T, -, c.10488G>A, c.(10486-10488)gaG>gaA, p.E3496E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1533](MUC16, 19, 9091108, 9091108, MISSENSE, SNP, G, A, g.chr19:9091108G>A, -, c.707C>T, c.(706-708)tCc>tTc, p.S236F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1534](MUC16, 19, 9077822, 9077822, SILENT, SNP, G, A, g.chr19:9077822G>A, -, c.9624C>T, c.(9622-9624)atC>atT, p.I3208I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1535](MUC16, 19, 9059510, 9059510, SILENT, SNP, C, G, g.chr19:9059510C>G, -, c.27936G>C, c.(27934-27936)gtG>gtC, p.V9312V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[1536](MUC16, 19, 9048215, 9048215, MISSENSE, SNP, G, A, g.chr19:9048215G>A, -, c.33416C>T, c.(33415-33417)tCa>tTa, p.S11139L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1537](MUC16, 19, 9049492, 9049492, SILENT, SNP, G, A, g.chr19:9049492G>A, -, c.32139C>T, c.(32137-32139)gcC>gcT, p.A10713A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1538](MUC16, 19, 9057898, 9057898, MISSENSE, SNP, C, T, g.chr19:9057898C>T, -, c.29548G>A, c.(29548-29550)Gac>Aac, p.D9850N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1539](MUC16, 19, 9059273, 9059273, SILENT, SNP, G, A, g.chr19:9059273G>A, -, c.28173C>T, c.(28171-28173)tcC>tcT, p.S9391S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[153](MUC16, 19, 9088011, 9088011, SILENT, SNP, G, T, g.chr19:9088011G>T, -, c.3804C>A, c.(3802-3804)acC>acA, p.T1268T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1540](MUC16, 19, 9060392, 9060392, SILENT, SNP, C, T, g.chr19:9060392C>T, -, c.27054G>A, c.(27052-27054)aaG>aaA, p.K9018K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1541](MUC16, 19, 9075252, 9075252, MISSENSE, SNP, G, A, g.chr19:9075252G>A, -, c.12194C>T, c.(12193-12195)tCt>tTt, p.S4065F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1542](MUC16, 19, 9069874, 9069874, MISSENSE, SNP, C, T, g.chr19:9069874C>T, -, c.17572G>A, c.(17572-17574)Gaa>Aaa, p.E5858K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1543](MUC16, 19, 9058952, 9058952, SILENT, SNP, C, T, g.chr19:9058952C>T, -, c.28494G>A, c.(28492-28494)gaG>gaA, p.E9498E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1544](MUC16, 19, 9074280, 9074280, MISSENSE, SNP, G, A, g.chr19:9074280G>A, -, c.13166C>T, c.(13165-13167)aCc>aTc, p.T4389I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1545](MUC16, 19, 9077007, 9077007, MISSENSE, SNP, C, T, g.chr19:9077007C>T, -, c.10439G>A, c.(10438-10440)gGa>gAa, p.G3480E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1546](MUC16, 19, 9012839, 9012839, MISSENSE, SNP, C, T, g.chr19:9012839C>T, -, c.38605G>A, c.(38605-38607)Gag>Aag, p.E12869K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1547](MUC16, 19, 9060020, 9060020, SILENT, SNP, G, A, g.chr19:9060020G>A, -, c.27426C>T, c.(27424-27426)agC>agT, p.S9142S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1548](MUC16, 19, 9062392, 9062392, MISSENSE, SNP, C, T, g.chr19:9062392C>T, -, c.25054G>A, c.(25054-25056)Gca>Aca, p.A8352T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1549](MUC16, 19, 9068217, 9068217, MISSENSE, SNP, G, A, g.chr19:9068217G>A, -, c.19229C>T, c.(19228-19230)tCc>tTc, p.S6410F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[154](MUC16, 19, 9026254, 9026254, MISSENSE, SNP, C, A, g.chr19:9026254C>A, -, c.36732G>T, c.(36730-36732)gaG>gaT, p.E12244D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1550](MUC16, 19, 9076139, 9076139, SILENT, SNP, G, A, g.chr19:9076139G>A, -, c.11307C>T, c.(11305-11307)atC>atT, p.I3769I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1551](MUC16, 19, 9087373, 9087373, MISSENSE, SNP, G, A, g.chr19:9087373G>A, -, c.4442C>T, c.(4441-4443)tCa>tTa, p.S1481L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1552](MUC16, 19, 9056625, 9056625, MISSENSE, SNP, G, A, g.chr19:9056625G>A, -, c.30821C>T, c.(30820-30822)tCc>tTc, p.S10274F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1553](MUC16, 19, 9060785, 9060785, SILENT, SNP, G, A, g.chr19:9060785G>A, -, c.26661C>T, c.(26659-26661)ttC>ttT, p.F8887F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1554](MUC16, 19, 9069045, 9069045, MISSENSE, SNP, G, A, g.chr19:9069045G>A, -, c.18401C>T, c.(18400-18402)tCa>tTa, p.S6134L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1555](MUC16, 19, 8971824, 8971824, SPLICE_SITE, SNP, C, T, g.chr19:8971824C>T, -, c.42768G>A, c.(42766-42768)acG>acA, p.T14256T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1556](MUC16, 19, 8976750, 8976750, MISSENSE, SNP, G, A, g.chr19:8976750G>A, -, c.42316C>T, c.(42316-42318)Ctt>Ttt, p.L14106F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1557](MUC16, 19, 8987264, 8987264, MISSENSE, SNP, C, T, g.chr19:8987264C>T, -, c.41823G>A, c.(41821-41823)atG>atA, p.M13941I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1558](MUC16, 19, 8993436, 8993436, SILENT, SNP, G, A, g.chr19:8993436G>A, -, c.41653C>T, c.(41653-41655)Ctg>Ttg, p.L13885L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1559](MUC16, 19, 8997177, 8997177, SILENT, SNP, G, A, g.chr19:8997177G>A, -, c.41019C>T, c.(41017-41019)tcC>tcT, p.S13673S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[155](MUC16, 19, 9060133, 9060133, MISSENSE, SNP, C, T, g.chr19:9060133C>T, -, c.27313G>A, c.(27313-27315)Ggg>Agg, p.G9105R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1560](MUC16, 19, 8999551, 8999551, MISSENSE, SNP, C, T, g.chr19:8999551C>T, -, c.40624G>A, c.(40624-40626)Ggg>Agg, p.G13542R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1561](MUC16, 19, 9000453, 9000453, MISSENSE, SNP, G, A, g.chr19:9000453G>A, -, c.40531C>T, c.(40531-40533)Ctt>Ttt, p.L13511F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1562](MUC16, 19, 9009273, 9009273, MISSENSE, SNP, G, A, g.chr19:9009273G>A, -, c.39200C>T, c.(39199-39201)tCt>tTt, p.S13067F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1563](MUC16, 19, 9009648, 9009648, SILENT, SNP, C, T, g.chr19:9009648C>T, -, c.39078G>A, c.(39076-39078)gaG>gaA, p.E13026E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1564](MUC16, 19, 9009703, 9009703, MISSENSE, SNP, G, A, g.chr19:9009703G>A, -, c.39023C>T, c.(39022-39024)cCt>cTt, p.P13008L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1565](MUC16, 19, 9014585, 9014585, MISSENSE, SNP, C, T, g.chr19:9014585C>T, -, c.38390G>A, c.(38389-38391)gGc>gAc, p.G12797D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1566](MUC16, 19, 9014622, 9014622, MISSENSE, SNP, C, T, g.chr19:9014622C>T, -, c.38353G>A, c.(38353-38355)Gag>Aag, p.E12785K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1567](MUC16, 19, 9014636, 9014636, MISSENSE, SNP, G, A, g.chr19:9014636G>A, -, c.38339C>T, c.(38338-38340)cCt>cTt, p.P12780L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1568](MUC16, 19, 9017436, 9017436, MISSENSE, SNP, C, T, g.chr19:9017436C>T, -, c.37888G>A, c.(37888-37890)Gag>Aag, p.E12630K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1569](MUC16, 19, 9017450, 9017450, MISSENSE, SNP, G, A, g.chr19:9017450G>A, -, c.37874C>T, c.(37873-37875)cCt>cTt, p.P12625L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[156](MUC16, 19, 9062451, 9062451, MISSENSE, SNP, C, T, g.chr19:9062451C>T, -, c.24995G>A, c.(24994-24996)aGa>aAa, p.R8332K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1570](MUC16, 19, 9018484, 9018484, MISSENSE, SNP, G, A, g.chr19:9018484G>A, -, c.37690C>T, c.(37690-37692)Cct>Tct, p.P12564S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1571](MUC16, 19, 9021059, 9021059, MISSENSE, SNP, C, T, g.chr19:9021059C>T, -, c.37264G>A, c.(37264-37266)Ggt>Agt, p.G12422S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1572](MUC16, 19, 9028347, 9028347, MISSENSE, SNP, G, A, g.chr19:9028347G>A, -, c.36445C>T, c.(36445-36447)Cgc>Tgc, p.R12149C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1573](MUC16, 19, 9038103, 9038103, MISSENSE, SNP, G, A, g.chr19:9038103G>A, -, c.36173C>T, c.(36172-36174)tCc>tTc, p.S12058F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1574](MUC16, 19, 9045590, 9045590, MISSENSE, SNP, G, A, g.chr19:9045590G>A, -, c.36041C>T, c.(36040-36042)gCc>gTc, p.A12014V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1575](MUC16, 19, 9046410, 9046410, MISSENSE, SNP, C, T, g.chr19:9046410C>T, -, c.35221G>A, c.(35221-35223)Gag>Aag, p.E11741K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1576](MUC16, 19, 9046907, 9046907, MISSENSE, SNP, G, A, g.chr19:9046907G>A, -, c.34724C>T, c.(34723-34725)gCc>gTc, p.A11575V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1577](MUC16, 19, 9047750, 9047750, MISSENSE, SNP, G, A, g.chr19:9047750G>A, -, c.33881C>T, c.(33880-33882)tCt>tTt, p.S11294F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1578](MUC16, 19, 9047864, 9047864, MISSENSE, SNP, G, A, g.chr19:9047864G>A, -, c.33767C>T, c.(33766-33768)tCc>tTc, p.S11256F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1579](MUC16, 19, 9048259, 9048259, SILENT, SNP, C, T, g.chr19:9048259C>T, -, c.33372G>A, c.(33370-33372)gaG>gaA, p.E11124E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[157](MUC16, 19, 9063615, 9063615, NONSENSE, SNP, G, T, g.chr19:9063615G>T, -, c.23831C>A, c.(23830-23832)tCa>tAa, p.S7944*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1580](MUC16, 19, 9048826, 9048826, SILENT, SNP, G, A, g.chr19:9048826G>A, -, c.32805C>T, c.(32803-32805)acC>acT, p.T10935T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1581](MUC16, 19, 9049049, 9049049, MISSENSE, SNP, G, A, g.chr19:9049049G>A, -, c.32582C>T, c.(32581-32583)tCc>tTc, p.S10861F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1582](MUC16, 19, 9049182, 9049182, MISSENSE, SNP, C, T, g.chr19:9049182C>T, -, c.32449G>A, c.(32449-32451)Gaa>Aaa, p.E10817K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1583](MUC16, 19, 9049518, 9049518, MISSENSE, SNP, C, T, g.chr19:9049518C>T, -, c.32113G>A, c.(32113-32115)Gaa>Aaa, p.E10705K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1584](MUC16, 19, 9049948, 9049948, SILENT, SNP, G, A, g.chr19:9049948G>A, -, c.31683C>T, c.(31681-31683)ttC>ttT, p.F10561F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1585](MUC16, 19, 9056223, 9056223, MISSENSE, SNP, C, T, g.chr19:9056223C>T, -, c.31223G>A, c.(31222-31224)gGa>gAa, p.G10408E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1586](MUC16, 19, 9056224, 9056224, MISSENSE, SNP, C, T, g.chr19:9056224C>T, -, c.31222G>A, c.(31222-31224)Gga>Aga, p.G10408R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1587](MUC16, 19, 9056435, 9056435, SILENT, SNP, G, A, g.chr19:9056435G>A, -, c.31011C>T, c.(31009-31011)ttC>ttT, p.F10337F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1588](MUC16, 19, 9056563, 9056563, MISSENSE, SNP, G, A, g.chr19:9056563G>A, -, c.30883C>T, c.(30883-30885)Cca>Tca, p.P10295S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1589](MUC16, 19, 9057615, 9057615, MISSENSE, SNP, G, A, g.chr19:9057615G>A, -, c.29831C>T, c.(29830-29832)tCc>tTc, p.S9944F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[158](MUC16, 19, 9068756, 9068756, SILENT, SNP, T, A, g.chr19:9068756T>A, -, c.18690A>T, c.(18688-18690)acA>acT, p.T6230T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1590](MUC16, 19, 9057713, 9057713, MISSENSE, SNP, C, T, g.chr19:9057713C>T, -, c.29733G>A, c.(29731-29733)atG>atA, p.M9911I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[1591](MUC16, 19, 9057754, 9057754, MISSENSE, SNP, G, A, g.chr19:9057754G>A, -, c.29692C>T, c.(29692-29694)Ctt>Ttt, p.L9898F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1592](MUC16, 19, 9057787, 9057787, MISSENSE, SNP, C, T, g.chr19:9057787C>T, -, c.29659G>A, c.(29659-29661)Gag>Aag, p.E9887K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1593](MUC16, 19, 9057962, 9057962, SILENT, SNP, G, A, g.chr19:9057962G>A, -, c.29484C>T, c.(29482-29484)tcC>tcT, p.S9828S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1594](MUC16, 19, 9058360, 9058360, MISSENSE, SNP, C, T, g.chr19:9058360C>T, -, c.29086G>A, c.(29086-29088)Gga>Aga, p.G9696R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1595](MUC16, 19, 9058581, 9058581, MISSENSE, SNP, G, A, g.chr19:9058581G>A, -, c.28865C>T, c.(28864-28866)cCc>cTc, p.P9622L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1596](MUC16, 19, 9058656, 9058656, MISSENSE, SNP, G, A, g.chr19:9058656G>A, -, c.28790C>T, c.(28789-28791)tCc>tTc, p.S9597F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1597](MUC16, 19, 9059450, 9059450, SILENT, SNP, G, A, g.chr19:9059450G>A, -, c.27996C>T, c.(27994-27996)tcC>tcT, p.S9332S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1598](MUC16, 19, 9059860, 9059860, MISSENSE, SNP, C, T, g.chr19:9059860C>T, -, c.27586G>A, c.(27586-27588)Gaa>Aaa, p.E9196K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1599](MUC16, 19, 9060569, 9060569, SILENT, SNP, G, A, g.chr19:9060569G>A, -, c.26877C>T, c.(26875-26877)ctC>ctT, p.L8959L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[159](MUC16, 19, 9088326, 9088326, SILENT, SNP, G, T, g.chr19:9088326G>T, -, c.3489C>A, c.(3487-3489)ccC>ccA, p.P1163P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[15](MUC16, 19, 9067291, 9067291, MISSENSE, SNP, G, T, g.chr19:9067291G>T, -, c.20155C>A, c.(20155-20157)Ccc>Acc, p.P6719T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1600](MUC16, 19, 9060664, 9060664, MISSENSE, SNP, C, T, g.chr19:9060664C>T, -, c.26782G>A, c.(26782-26784)Gag>Aag, p.E8928K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1601](MUC16, 19, 9060837, 9060837, MISSENSE, SNP, G, A, g.chr19:9060837G>A, -, c.26609C>T, c.(26608-26610)tCc>tTc, p.S8870F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1602](MUC16, 19, 9061005, 9061005, MISSENSE, SNP, C, T, g.chr19:9061005C>T, -, c.26441G>A, c.(26440-26442)gGa>gAa, p.G8814E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1603](MUC16, 19, 9061161, 9061161, MISSENSE, SNP, G, A, g.chr19:9061161G>A, -, c.26285C>T, c.(26284-26286)tCa>tTa, p.S8762L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1604](MUC16, 19, 9061180, 9061180, MISSENSE, SNP, G, A, g.chr19:9061180G>A, -, c.26266C>T, c.(26266-26268)Cct>Tct, p.P8756S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1605](MUC16, 19, 9061487, 9061487, SILENT, SNP, C, T, g.chr19:9061487C>T, -, c.25959G>A, c.(25957-25959)gtG>gtA, p.V8653V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1606](MUC16, 19, 9061525, 9061525, MISSENSE, SNP, G, A, g.chr19:9061525G>A, -, c.25921C>T, c.(25921-25923)Ccc>Tcc, p.P8641S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1607](MUC16, 19, 9062045, 9062045, SILENT, SNP, G, A, g.chr19:9062045G>A, -, c.25401C>T, c.(25399-25401)ttC>ttT, p.F8467F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1608](MUC16, 19, 9062075, 9062075, SILENT, SNP, C, T, g.chr19:9062075C>T, -, c.25371G>A, c.(25369-25371)agG>agA, p.R8457R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1609](MUC16, 19, 9062169, 9062169, MISSENSE, SNP, C, T, g.chr19:9062169C>T, -, c.25277G>A, c.(25276-25278)aGg>aAg, p.R8426K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[160](MUC16, 19, 8994476, 8994476, MISSENSE, SNP, C, T, g.chr19:8994476C>T, -, c.41416G>A, c.(41416-41418)Gag>Aag, p.E13806K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1610](MUC16, 19, 9062500, 9062500, MISSENSE, SNP, C, T, g.chr19:9062500C>T, -, c.24946G>A, c.(24946-24948)Gaa>Aaa, p.E8316K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1611](MUC16, 19, 9063345, 9063345, MISSENSE, SNP, G, A, g.chr19:9063345G>A, -, c.24101C>T, c.(24100-24102)tCa>tTa, p.S8034L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1612](MUC16, 19, 9063593, 9063593, SILENT, SNP, C, T, g.chr19:9063593C>T, -, c.23853G>A, c.(23851-23853)agG>agA, p.R7951R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1613](MUC16, 19, 9063965, 9063965, SILENT, SNP, G, A, g.chr19:9063965G>A, -, c.23481C>T, c.(23479-23481)tcC>tcT, p.S7827S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1614](MUC16, 19, 9064290, 9064290, MISSENSE, SNP, G, A, g.chr19:9064290G>A, -, c.23156C>T, c.(23155-23157)tCa>tTa, p.S7719L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1615](MUC16, 19, 9064299, 9064299, MISSENSE, SNP, G, A, g.chr19:9064299G>A, -, c.23147C>T, c.(23146-23148)cCt>cTt, p.P7716L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1616](MUC16, 19, 9064305, 9064305, MISSENSE, SNP, G, A, g.chr19:9064305G>A, -, c.23141C>T, c.(23140-23142)cCc>cTc, p.P7714L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1617](MUC16, 19, 9064619, 9064619, SILENT, SNP, G, A, g.chr19:9064619G>A, -, c.22827C>T, c.(22825-22827)gcC>gcT, p.A7609A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1618](MUC16, 19, 9064667, 9064667, SILENT, SNP, G, A, g.chr19:9064667G>A, -, c.22779C>T, c.(22777-22779)tcC>tcT, p.S7593S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1619](MUC16, 19, 9064856, 9064856, SILENT, SNP, C, T, g.chr19:9064856C>T, -, c.22590G>A, c.(22588-22590)agG>agA, p.R7530R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[161](MUC16, 19, 9046026, 9046026, MISSENSE, SNP, G, A, g.chr19:9046026G>A, -, c.35605C>T, c.(35605-35607)Ctt>Ttt, p.L11869F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1620](MUC16, 19, 9065396, 9065396, SILENT, SNP, G, A, g.chr19:9065396G>A, -, c.22050C>T, c.(22048-22050)tcC>tcT, p.S7350S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1621](MUC16, 19, 9065888, 9065888, SILENT, SNP, C, T, g.chr19:9065888C>T, -, c.21558G>A, c.(21556-21558)gtG>gtA, p.V7186V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1622](MUC16, 19, 9066331, 9066331, MISSENSE, SNP, A, T, g.chr19:9066331A>T, -, c.21115T>A, c.(21115-21117)Tct>Act, p.S7039T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1623](MUC16, 19, 9066520, 9066520, MISSENSE, SNP, G, A, g.chr19:9066520G>A, -, c.20926C>T, c.(20926-20928)Ccc>Tcc, p.P6976S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1624](MUC16, 19, 9067224, 9067224, MISSENSE, SNP, G, A, g.chr19:9067224G>A, -, c.20222C>T, c.(20221-20223)cCt>cTt, p.P6741L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1625](MUC16, 19, 9067464, 9067464, MISSENSE, SNP, C, T, g.chr19:9067464C>T, -, c.19982G>A, c.(19981-19983)gGa>gAa, p.G6661E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1626](MUC16, 19, 9067484, 9067484, SILENT, SNP, G, A, g.chr19:9067484G>A, -, c.19962C>T, c.(19960-19962)tcC>tcT, p.S6654S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1627](MUC16, 19, 9067623, 9067623, MISSENSE, SNP, G, A, g.chr19:9067623G>A, -, c.19823C>T, c.(19822-19824)tCg>tTg, p.S6608L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1628](MUC16, 19, 9067679, 9067679, SILENT, SNP, G, A, g.chr19:9067679G>A, -, c.19767C>T, c.(19765-19767)tcC>tcT, p.S6589S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1629](MUC16, 19, 9068061, 9068061, NONSENSE, SNP, C, T, g.chr19:9068061C>T, -, c.19385G>A, c.(19384-19386)tGg>tAg, p.W6462*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[162](MUC16, 19, 9046272, 9046272, MISSENSE, SNP, G, A, g.chr19:9046272G>A, -, c.35359C>T, c.(35359-35361)Cct>Tct, p.P11787S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1630](MUC16, 19, 9069180, 9069180, MISSENSE, SNP, G, A, g.chr19:9069180G>A, -, c.18266C>T, c.(18265-18267)tCa>tTa, p.S6089L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1631](MUC16, 19, 9069366, 9069366, MISSENSE, SNP, G, A, g.chr19:9069366G>A, -, c.18080C>T, c.(18079-18081)tCc>tTc, p.S6027F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1632](MUC16, 19, 9069622, 9069622, MISSENSE, SNP, G, A, g.chr19:9069622G>A, -, c.17824C>T, c.(17824-17826)Ctt>Ttt, p.L5942F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1633](MUC16, 19, 9069754, 9069754, MISSENSE, SNP, G, A, g.chr19:9069754G>A, -, c.17692C>T, c.(17692-17694)Cca>Tca, p.P5898S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1634](MUC16, 19, 9069821, 9069821, SILENT, SNP, G, A, g.chr19:9069821G>A, -, c.17625C>T, c.(17623-17625)acC>acT, p.T5875T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1635](MUC16, 19, 9070255, 9070255, MISSENSE, SNP, C, T, g.chr19:9070255C>T, -, c.17191G>A, c.(17191-17193)Gaa>Aaa, p.E5731K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1636](MUC16, 19, 9070360, 9070360, MISSENSE, SNP, C, T, g.chr19:9070360C>T, -, c.17086G>A, c.(17086-17088)Gag>Aag, p.E5696K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1637](MUC16, 19, 9070509, 9070509, MISSENSE, SNP, G, A, g.chr19:9070509G>A, -, c.16937C>T, c.(16936-16938)tCc>tTc, p.S5646F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1638](MUC16, 19, 9070533, 9070533, MISSENSE, SNP, G, A, g.chr19:9070533G>A, -, c.16913C>T, c.(16912-16914)tCc>tTc, p.S5638F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1639](MUC16, 19, 9071252, 9071252, SILENT, SNP, G, A, g.chr19:9071252G>A, -, c.16194C>T, c.(16192-16194)atC>atT, p.I5398I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[163](MUC16, 19, 9060378, 9060378, MISSENSE, SNP, G, A, g.chr19:9060378G>A, -, c.27068C>T, c.(27067-27069)cCt>cTt, p.P9023L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1640](MUC16, 19, 9071513, 9071513, SILENT, SNP, G, A, g.chr19:9071513G>A, -, c.15933C>T, c.(15931-15933)acC>acT, p.T5311T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1641](MUC16, 19, 9071765, 9071765, SILENT, SNP, G, A, g.chr19:9071765G>A, -, c.15681C>T, c.(15679-15681)gtC>gtT, p.V5227V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1642](MUC16, 19, 9071953, 9071953, MISSENSE, SNP, G, A, g.chr19:9071953G>A, -, c.15493C>T, c.(15493-15495)Cct>Tct, p.P5165S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1643](MUC16, 19, 9072087, 9072087, MISSENSE, SNP, G, A, g.chr19:9072087G>A, -, c.15359C>T, c.(15358-15360)tCt>tTt, p.S5120F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1644](MUC16, 19, 9072128, 9072128, SILENT, SNP, G, A, g.chr19:9072128G>A, -, c.15318C>T, c.(15316-15318)gcC>gcT, p.A5106A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1645](MUC16, 19, 9072407, 9072407, SILENT, SNP, C, T, g.chr19:9072407C>T, -, c.15039G>A, c.(15037-15039)ttG>ttA, p.L5013L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1646](MUC16, 19, 9072414, 9072414, MISSENSE, SNP, G, A, g.chr19:9072414G>A, -, c.15032C>T, c.(15031-15033)tCa>tTa, p.S5011L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1647](MUC16, 19, 9073656, 9073656, MISSENSE, SNP, G, A, g.chr19:9073656G>A, -, c.13790C>T, c.(13789-13791)tCc>tTc, p.S4597F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1648](MUC16, 19, 9073721, 9073721, SILENT, SNP, C, T, g.chr19:9073721C>T, -, c.13725G>A, c.(13723-13725)ggG>ggA, p.G4575G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1649](MUC16, 19, 9074222, 9074222, SILENT, SNP, G, A, g.chr19:9074222G>A, -, c.13224C>T, c.(13222-13224)acC>acT, p.T4408T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[164](MUC16, 19, 9060904, 9060904, MISSENSE, SNP, C, T, g.chr19:9060904C>T, -, c.26542G>A, c.(26542-26544)Gaa>Aaa, p.E8848K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[1650](MUC16, 19, 9074263, 9074263, MISSENSE, SNP, C, T, g.chr19:9074263C>T, -, c.13183G>A, c.(13183-13185)Gga>Aga, p.G4395R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1651](MUC16, 19, 9074867, 9074867, SILENT, SNP, G, A, g.chr19:9074867G>A, -, c.12579C>T, c.(12577-12579)ttC>ttT, p.F4193F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1652](MUC16, 19, 9074991, 9074991, MISSENSE, SNP, G, A, g.chr19:9074991G>A, -, c.12455C>T, c.(12454-12456)tCt>tTt, p.S4152F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1653](MUC16, 19, 9075173, 9075173, MISSENSE, SNP, C, T, g.chr19:9075173C>T, -, c.12273G>A, c.(12271-12273)atG>atA, p.M4091I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1654](MUC16, 19, 9075287, 9075287, SILENT, SNP, G, A, g.chr19:9075287G>A, -, c.12159C>T, c.(12157-12159)tcC>tcT, p.S4053S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1655](MUC16, 19, 9075383, 9075383, SILENT, SNP, G, A, g.chr19:9075383G>A, -, c.12063C>T, c.(12061-12063)agC>agT, p.S4021S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1656](MUC16, 19, 9075484, 9075484, MISSENSE, SNP, C, T, g.chr19:9075484C>T, -, c.11962G>A, c.(11962-11964)Gaa>Aaa, p.E3988K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1657](MUC16, 19, 9076695, 9076695, MISSENSE, SNP, G, A, g.chr19:9076695G>A, -, c.10751C>T, c.(10750-10752)tCt>tTt, p.S3584F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1658](MUC16, 19, 9077159, 9077159, NONSENSE, SNP, C, T, g.chr19:9077159C>T, -, c.10287G>A, c.(10285-10287)tgG>tgA, p.W3429*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1659](MUC16, 19, 9077764, 9077764, MISSENSE, SNP, G, A, g.chr19:9077764G>A, -, c.9682C>T, c.(9682-9684)Cct>Tct, p.P3228S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[165](MUC16, 19, 9061715, 9061715, SILENT, SNP, G, A, g.chr19:9061715G>A, -, c.25731C>T, c.(25729-25731)tcC>tcT, p.S8577S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1660](MUC16, 19, 9082364, 9082364, MISSENSE, SNP, G, A, g.chr19:9082364G>A, -, c.9451C>T, c.(9451-9453)Cct>Tct, p.P3151S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1661](MUC16, 19, 9082505, 9082505, MISSENSE, SNP, C, T, g.chr19:9082505C>T, -, c.9310G>A, c.(9310-9312)Gag>Aag, p.E3104K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1662](MUC16, 19, 9082626, 9082626, SILENT, SNP, C, T, g.chr19:9082626C>T, -, c.9189G>A, c.(9187-9189)agG>agA, p.R3063R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1663](MUC16, 19, 9082977, 9082977, SILENT, SNP, C, T, g.chr19:9082977C>T, -, c.8838G>A, c.(8836-8838)aaG>aaA, p.K2946K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1664](MUC16, 19, 9083067, 9083067, SILENT, SNP, G, A, g.chr19:9083067G>A, -, c.8748C>T, c.(8746-8748)acC>acT, p.T2916T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1665](MUC16, 19, 9083611, 9083611, MISSENSE, SNP, G, A, g.chr19:9083611G>A, -, c.8204C>T, c.(8203-8205)cCa>cTa, p.P2735L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1666](MUC16, 19, 9083644, 9083644, MISSENSE, SNP, G, A, g.chr19:9083644G>A, -, c.8171C>T, c.(8170-8172)cCt>cTt, p.P2724L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1667](MUC16, 19, 9084263, 9084263, MISSENSE, SNP, C, T, g.chr19:9084263C>T, -, c.7552G>A, c.(7552-7554)Ggc>Agc, p.G2518S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1668](MUC16, 19, 9084500, 9084500, MISSENSE, SNP, C, T, g.chr19:9084500C>T, -, c.7315G>A, c.(7315-7317)Ggg>Agg, p.G2439R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1669](MUC16, 19, 9084665, 9084665, MISSENSE, SNP, C, T, g.chr19:9084665C>T, -, c.7150G>A, c.(7150-7152)Gat>Aat, p.D2384N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[166](MUC16, 19, 9064221, 9064221, MISSENSE, SNP, G, A, g.chr19:9064221G>A, -, c.23225C>T, c.(23224-23226)tCa>tTa, p.S7742L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1670](MUC16, 19, 9085498, 9085498, MISSENSE, SNP, G, A, g.chr19:9085498G>A, -, c.6317C>T, c.(6316-6318)cCa>cTa, p.P2106L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1671](MUC16, 19, 9085504, 9085504, MISSENSE, SNP, C, T, g.chr19:9085504C>T, -, c.6311G>A, c.(6310-6312)aGa>aAa, p.R2104K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1672](MUC16, 19, 9085580, 9085580, MISSENSE, SNP, C, T, g.chr19:9085580C>T, -, c.6235G>A, c.(6235-6237)Ggg>Agg, p.G2079R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1673](MUC16, 19, 9085734, 9085734, SILENT, SNP, G, A, g.chr19:9085734G>A, -, c.6081C>T, c.(6079-6081)tcC>tcT, p.S2027S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1674](MUC16, 19, 9085995, 9085995, SILENT, SNP, G, A, g.chr19:9085995G>A, -, c.5820C>T, c.(5818-5820)tcC>tcT, p.S1940S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1675](MUC16, 19, 9086464, 9086464, MISSENSE, SNP, G, A, g.chr19:9086464G>A, -, c.5351C>T, c.(5350-5352)tCt>tTt, p.S1784F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1676](MUC16, 19, 9086521, 9086521, MISSENSE, SNP, C, T, g.chr19:9086521C>T, -, c.5294G>A, c.(5293-5295)gGc>gAc, p.G1765D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1677](MUC16, 19, 9086960, 9086960, MISSENSE, SNP, C, T, g.chr19:9086960C>T, -, c.4855G>A, c.(4855-4857)Gag>Aag, p.E1619K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1678](MUC16, 19, 9087344, 9087344, MISSENSE, SNP, G, A, g.chr19:9087344G>A, -, c.4471C>T, c.(4471-4473)Cct>Tct, p.P1491S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1679](MUC16, 19, 9087697, 9087697, MISSENSE, SNP, G, A, g.chr19:9087697G>A, -, c.4118C>T, c.(4117-4119)tCa>tTa, p.S1373L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[167](MUC16, 19, 9075654, 9075654, MISSENSE, SNP, C, T, g.chr19:9075654C>T, -, c.11792G>A, c.(11791-11793)aGa>aAa, p.R3931K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1680](MUC16, 19, 9087887, 9087887, MISSENSE, SNP, G, A, g.chr19:9087887G>A, -, c.3928C>T, c.(3928-3930)Cct>Tct, p.P1310S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1681](MUC16, 19, 9088430, 9088430, SILENT, SNP, G, A, g.chr19:9088430G>A, -, c.3385C>T, c.(3385-3387)Ctg>Ttg, p.L1129L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1682](MUC16, 19, 9088726, 9088726, MISSENSE, SNP, G, A, g.chr19:9088726G>A, -, c.3089C>T, c.(3088-3090)cCa>cTa, p.P1030L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1683](MUC16, 19, 9088839, 9088839, SILENT, SNP, G, A, g.chr19:9088839G>A, -, c.2976C>T, c.(2974-2976)ctC>ctT, p.L992L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1684](MUC16, 19, 9089883, 9089883, SILENT, SNP, C, T, g.chr19:9089883C>T, -, c.1932G>A, c.(1930-1932)acG>acA, p.T644T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1685](MUC16, 19, 9089917, 9089917, MISSENSE, SNP, G, A, g.chr19:9089917G>A, -, c.1898C>T, c.(1897-1899)tCa>tTa, p.S633L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1686](MUC16, 19, 9090556, 9090556, MISSENSE, SNP, G, A, g.chr19:9090556G>A, -, c.1259C>T, c.(1258-1260)aCc>aTc, p.T420I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1687](MUC16, 19, 9090630, 9090630, SILENT, SNP, G, A, g.chr19:9090630G>A, -, c.1185C>T, c.(1183-1185)acC>acT, p.T395T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1688](MUC16, 19, 9091388, 9091388, MISSENSE, SNP, C, T, g.chr19:9091388C>T, -, c.427G>A, c.(427-429)Gaa>Aaa, p.E143K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1689](MUC16, 19, 9091556, 9091556, MISSENSE, SNP, G, A, g.chr19:9091556G>A, -, c.259C>T, c.(259-261)Cct>Tct, p.P87S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[168](MUC16, 19, 9084930, 9084930, NONSENSE, SNP, C, T, g.chr19:9084930C>T, -, c.6885G>A, c.(6883-6885)tgG>tgA, p.W2295*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1690](MUC16, 19, 9091567, 9091567, MISSENSE, SNP, G, A, g.chr19:9091567G>A, -, c.248C>T, c.(247-249)tCc>tTc, p.S83F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1691](MUC16, 19, 8976750, 8976750, MISSENSE, SNP, G, A, g.chr19:8976750G>A, -, c.42316C>T, c.(42316-42318)Ctt>Ttt, p.L14106F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1692](MUC16, 19, 8987264, 8987264, MISSENSE, SNP, C, T, g.chr19:8987264C>T, -, c.41823G>A, c.(41821-41823)atG>atA, p.M13941I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1693](MUC16, 19, 8993436, 8993436, SILENT, SNP, G, A, g.chr19:8993436G>A, -, c.41653C>T, c.(41653-41655)Ctg>Ttg, p.L13885L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1694](MUC16, 19, 8997177, 8997177, SILENT, SNP, G, A, g.chr19:8997177G>A, -, c.41019C>T, c.(41017-41019)tcC>tcT, p.S13673S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1695](MUC16, 19, 9000453, 9000453, MISSENSE, SNP, G, A, g.chr19:9000453G>A, -, c.40531C>T, c.(40531-40533)Ctt>Ttt, p.L13511F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1696](MUC16, 19, 9009273, 9009273, MISSENSE, SNP, G, A, g.chr19:9009273G>A, -, c.39200C>T, c.(39199-39201)tCt>tTt, p.S13067F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1697](MUC16, 19, 9009648, 9009648, SILENT, SNP, C, T, g.chr19:9009648C>T, -, c.39078G>A, c.(39076-39078)gaG>gaA, p.E13026E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1698](MUC16, 19, 9009703, 9009703, MISSENSE, SNP, G, A, g.chr19:9009703G>A, -, c.39023C>T, c.(39022-39024)cCt>cTt, p.P13008L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1699](MUC16, 19, 9014585, 9014585, MISSENSE, SNP, C, T, g.chr19:9014585C>T, -, c.38390G>A, c.(38389-38391)gGc>gAc, p.G12797D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[169](MUC16, 19, 9089082, 9089082, SILENT, SNP, G, A, g.chr19:9089082G>A, -, c.2733C>T, c.(2731-2733)ttC>ttT, p.F911F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[16](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1700](MUC16, 19, 9014622, 9014622, MISSENSE, SNP, C, T, g.chr19:9014622C>T, -, c.38353G>A, c.(38353-38355)Gag>Aag, p.E12785K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1701](MUC16, 19, 9014636, 9014636, MISSENSE, SNP, G, A, g.chr19:9014636G>A, -, c.38339C>T, c.(38338-38340)cCt>cTt, p.P12780L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1702](MUC16, 19, 9017436, 9017436, MISSENSE, SNP, C, T, g.chr19:9017436C>T, -, c.37888G>A, c.(37888-37890)Gag>Aag, p.E12630K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1703](MUC16, 19, 9017450, 9017450, MISSENSE, SNP, G, A, g.chr19:9017450G>A, -, c.37874C>T, c.(37873-37875)cCt>cTt, p.P12625L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1704](MUC16, 19, 9018484, 9018484, MISSENSE, SNP, G, A, g.chr19:9018484G>A, -, c.37690C>T, c.(37690-37692)Cct>Tct, p.P12564S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1705](MUC16, 19, 9021059, 9021059, MISSENSE, SNP, C, T, g.chr19:9021059C>T, -, c.37264G>A, c.(37264-37266)Ggt>Agt, p.G12422S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1706](MUC16, 19, 9028347, 9028347, MISSENSE, SNP, G, A, g.chr19:9028347G>A, -, c.36445C>T, c.(36445-36447)Cgc>Tgc, p.R12149C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1707](MUC16, 19, 9038103, 9038103, MISSENSE, SNP, G, A, g.chr19:9038103G>A, -, c.36173C>T, c.(36172-36174)tCc>tTc, p.S12058F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1708](MUC16, 19, 9045590, 9045590, MISSENSE, SNP, G, A, g.chr19:9045590G>A, -, c.36041C>T, c.(36040-36042)gCc>gTc, p.A12014V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1709](MUC16, 19, 9046410, 9046410, MISSENSE, SNP, C, T, g.chr19:9046410C>T, -, c.35221G>A, c.(35221-35223)Gag>Aag, p.E11741K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[170](MUC16, 19, 9089737, 9089737, MISSENSE, SNP, C, T, g.chr19:9089737C>T, -, c.2078G>A, c.(2077-2079)gGa>gAa, p.G693E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1710](MUC16, 19, 9046907, 9046907, MISSENSE, SNP, G, A, g.chr19:9046907G>A, -, c.34724C>T, c.(34723-34725)gCc>gTc, p.A11575V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1711](MUC16, 19, 9047750, 9047750, MISSENSE, SNP, G, A, g.chr19:9047750G>A, -, c.33881C>T, c.(33880-33882)tCt>tTt, p.S11294F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1712](MUC16, 19, 9047864, 9047864, MISSENSE, SNP, G, A, g.chr19:9047864G>A, -, c.33767C>T, c.(33766-33768)tCc>tTc, p.S11256F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1713](MUC16, 19, 9048259, 9048259, SILENT, SNP, C, T, g.chr19:9048259C>T, -, c.33372G>A, c.(33370-33372)gaG>gaA, p.E11124E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1714](MUC16, 19, 9048826, 9048826, SILENT, SNP, G, A, g.chr19:9048826G>A, -, c.32805C>T, c.(32803-32805)acC>acT, p.T10935T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1715](MUC16, 19, 9049049, 9049049, MISSENSE, SNP, G, A, g.chr19:9049049G>A, -, c.32582C>T, c.(32581-32583)tCc>tTc, p.S10861F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1716](MUC16, 19, 9049182, 9049182, MISSENSE, SNP, C, T, g.chr19:9049182C>T, -, c.32449G>A, c.(32449-32451)Gaa>Aaa, p.E10817K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1717](MUC16, 19, 9049518, 9049518, MISSENSE, SNP, C, T, g.chr19:9049518C>T, -, c.32113G>A, c.(32113-32115)Gaa>Aaa, p.E10705K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1718](MUC16, 19, 9049948, 9049948, SILENT, SNP, G, A, g.chr19:9049948G>A, -, c.31683C>T, c.(31681-31683)ttC>ttT, p.F10561F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1719](MUC16, 19, 9056223, 9056223, MISSENSE, SNP, C, T, g.chr19:9056223C>T, -, c.31223G>A, c.(31222-31224)gGa>gAa, p.G10408E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[171](MUC16, 19, 9091597, 9091597, MISSENSE, SNP, C, T, g.chr19:9091597C>T, -, c.218G>A, c.(217-219)gGa>gAa, p.G73E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1720](MUC16, 19, 9056224, 9056224, MISSENSE, SNP, C, T, g.chr19:9056224C>T, -, c.31222G>A, c.(31222-31224)Gga>Aga, p.G10408R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1721](MUC16, 19, 9056435, 9056435, SILENT, SNP, G, A, g.chr19:9056435G>A, -, c.31011C>T, c.(31009-31011)ttC>ttT, p.F10337F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1722](MUC16, 19, 9056563, 9056563, MISSENSE, SNP, G, A, g.chr19:9056563G>A, -, c.30883C>T, c.(30883-30885)Cca>Tca, p.P10295S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1723](MUC16, 19, 9057615, 9057615, MISSENSE, SNP, G, A, g.chr19:9057615G>A, -, c.29831C>T, c.(29830-29832)tCc>tTc, p.S9944F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1724](MUC16, 19, 9057713, 9057713, MISSENSE, SNP, C, T, g.chr19:9057713C>T, -, c.29733G>A, c.(29731-29733)atG>atA, p.M9911I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1725](MUC16, 19, 9057754, 9057754, MISSENSE, SNP, G, A, g.chr19:9057754G>A, -, c.29692C>T, c.(29692-29694)Ctt>Ttt, p.L9898F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1726](MUC16, 19, 9057787, 9057787, MISSENSE, SNP, C, T, g.chr19:9057787C>T, -, c.29659G>A, c.(29659-29661)Gag>Aag, p.E9887K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1727](MUC16, 19, 9057962, 9057962, SILENT, SNP, G, A, g.chr19:9057962G>A, -, c.29484C>T, c.(29482-29484)tcC>tcT, p.S9828S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1728](MUC16, 19, 9058360, 9058360, MISSENSE, SNP, C, T, g.chr19:9058360C>T, -, c.29086G>A, c.(29086-29088)Gga>Aga, p.G9696R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1729](MUC16, 19, 9058581, 9058581, MISSENSE, SNP, G, A, g.chr19:9058581G>A, -, c.28865C>T, c.(28864-28866)cCc>cTc, p.P9622L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[172](MUC16, 19, 9066659, 9066659, SILENT, SNP, G, T, g.chr19:9066659G>T, -, c.20787C>A, c.(20785-20787)tcC>tcA, p.S6929S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[1730](MUC16, 19, 9058656, 9058656, MISSENSE, SNP, G, A, g.chr19:9058656G>A, -, c.28790C>T, c.(28789-28791)tCc>tTc, p.S9597F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1731](MUC16, 19, 9059450, 9059450, SILENT, SNP, G, A, g.chr19:9059450G>A, -, c.27996C>T, c.(27994-27996)tcC>tcT, p.S9332S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1732](MUC16, 19, 9059860, 9059860, MISSENSE, SNP, C, T, g.chr19:9059860C>T, -, c.27586G>A, c.(27586-27588)Gaa>Aaa, p.E9196K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1733](MUC16, 19, 9060569, 9060569, SILENT, SNP, G, A, g.chr19:9060569G>A, -, c.26877C>T, c.(26875-26877)ctC>ctT, p.L8959L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1734](MUC16, 19, 9060664, 9060664, MISSENSE, SNP, C, T, g.chr19:9060664C>T, -, c.26782G>A, c.(26782-26784)Gag>Aag, p.E8928K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1735](MUC16, 19, 9060837, 9060837, MISSENSE, SNP, G, A, g.chr19:9060837G>A, -, c.26609C>T, c.(26608-26610)tCc>tTc, p.S8870F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1736](MUC16, 19, 9061005, 9061005, MISSENSE, SNP, C, T, g.chr19:9061005C>T, -, c.26441G>A, c.(26440-26442)gGa>gAa, p.G8814E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1737](MUC16, 19, 9061161, 9061161, MISSENSE, SNP, G, A, g.chr19:9061161G>A, -, c.26285C>T, c.(26284-26286)tCa>tTa, p.S8762L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1738](MUC16, 19, 9061180, 9061180, MISSENSE, SNP, G, A, g.chr19:9061180G>A, -, c.26266C>T, c.(26266-26268)Cct>Tct, p.P8756S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1739](MUC16, 19, 9061487, 9061487, SILENT, SNP, C, T, g.chr19:9061487C>T, -, c.25959G>A, c.(25957-25959)gtG>gtA, p.V8653V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[173](MUC16, 19, 9069346, 9069346, MISSENSE, SNP, G, T, g.chr19:9069346G>T, -, c.18100C>A, c.(18100-18102)Cag>Aag, p.Q6034K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1740](MUC16, 19, 9061525, 9061525, MISSENSE, SNP, G, A, g.chr19:9061525G>A, -, c.25921C>T, c.(25921-25923)Ccc>Tcc, p.P8641S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1741](MUC16, 19, 9062045, 9062045, SILENT, SNP, G, A, g.chr19:9062045G>A, -, c.25401C>T, c.(25399-25401)ttC>ttT, p.F8467F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1742](MUC16, 19, 9062075, 9062075, SILENT, SNP, C, T, g.chr19:9062075C>T, -, c.25371G>A, c.(25369-25371)agG>agA, p.R8457R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1743](MUC16, 19, 9062169, 9062169, MISSENSE, SNP, C, T, g.chr19:9062169C>T, -, c.25277G>A, c.(25276-25278)aGg>aAg, p.R8426K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1744](MUC16, 19, 9062500, 9062500, MISSENSE, SNP, C, T, g.chr19:9062500C>T, -, c.24946G>A, c.(24946-24948)Gaa>Aaa, p.E8316K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1745](MUC16, 19, 9063345, 9063345, MISSENSE, SNP, G, A, g.chr19:9063345G>A, -, c.24101C>T, c.(24100-24102)tCa>tTa, p.S8034L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1746](MUC16, 19, 9063593, 9063593, SILENT, SNP, C, T, g.chr19:9063593C>T, -, c.23853G>A, c.(23851-23853)agG>agA, p.R7951R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1747](MUC16, 19, 9063965, 9063965, SILENT, SNP, G, A, g.chr19:9063965G>A, -, c.23481C>T, c.(23479-23481)tcC>tcT, p.S7827S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1748](MUC16, 19, 9064290, 9064290, MISSENSE, SNP, G, A, g.chr19:9064290G>A, -, c.23156C>T, c.(23155-23157)tCa>tTa, p.S7719L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1749](MUC16, 19, 9064299, 9064299, MISSENSE, SNP, G, A, g.chr19:9064299G>A, -, c.23147C>T, c.(23146-23148)cCt>cTt, p.P7716L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[174](MUC16, 19, 9070729, 9070729, MISSENSE, SNP, C, A, g.chr19:9070729C>A, -, c.16717G>T, c.(16717-16719)Ggg>Tgg, p.G5573W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1750](MUC16, 19, 9064305, 9064305, MISSENSE, SNP, G, A, g.chr19:9064305G>A, -, c.23141C>T, c.(23140-23142)cCc>cTc, p.P7714L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1751](MUC16, 19, 9064619, 9064619, SILENT, SNP, G, A, g.chr19:9064619G>A, -, c.22827C>T, c.(22825-22827)gcC>gcT, p.A7609A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1752](MUC16, 19, 9064667, 9064667, SILENT, SNP, G, A, g.chr19:9064667G>A, -, c.22779C>T, c.(22777-22779)tcC>tcT, p.S7593S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1753](MUC16, 19, 9064856, 9064856, SILENT, SNP, C, T, g.chr19:9064856C>T, -, c.22590G>A, c.(22588-22590)agG>agA, p.R7530R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1754](MUC16, 19, 9065396, 9065396, SILENT, SNP, G, A, g.chr19:9065396G>A, -, c.22050C>T, c.(22048-22050)tcC>tcT, p.S7350S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1755](MUC16, 19, 9065888, 9065888, SILENT, SNP, C, T, g.chr19:9065888C>T, -, c.21558G>A, c.(21556-21558)gtG>gtA, p.V7186V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1756](MUC16, 19, 9066331, 9066331, MISSENSE, SNP, A, T, g.chr19:9066331A>T, -, c.21115T>A, c.(21115-21117)Tct>Act, p.S7039T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1757](MUC16, 19, 9066520, 9066520, MISSENSE, SNP, G, A, g.chr19:9066520G>A, -, c.20926C>T, c.(20926-20928)Ccc>Tcc, p.P6976S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1758](MUC16, 19, 9067224, 9067224, MISSENSE, SNP, G, A, g.chr19:9067224G>A, -, c.20222C>T, c.(20221-20223)cCt>cTt, p.P6741L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1759](MUC16, 19, 9067464, 9067464, MISSENSE, SNP, C, T, g.chr19:9067464C>T, -, c.19982G>A, c.(19981-19983)gGa>gAa, p.G6661E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[175](MUC16, 19, 9073155, 9073155, MISSENSE, SNP, G, T, g.chr19:9073155G>T, -, c.14291C>A, c.(14290-14292)cCg>cAg, p.P4764Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[1760](MUC16, 19, 9067484, 9067484, SILENT, SNP, G, A, g.chr19:9067484G>A, -, c.19962C>T, c.(19960-19962)tcC>tcT, p.S6654S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1761](MUC16, 19, 9067623, 9067623, MISSENSE, SNP, G, A, g.chr19:9067623G>A, -, c.19823C>T, c.(19822-19824)tCg>tTg, p.S6608L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1762](MUC16, 19, 9067679, 9067679, SILENT, SNP, G, A, g.chr19:9067679G>A, -, c.19767C>T, c.(19765-19767)tcC>tcT, p.S6589S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1763](MUC16, 19, 9068061, 9068061, NONSENSE, SNP, C, T, g.chr19:9068061C>T, -, c.19385G>A, c.(19384-19386)tGg>tAg, p.W6462*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1764](MUC16, 19, 9069180, 9069180, MISSENSE, SNP, G, A, g.chr19:9069180G>A, -, c.18266C>T, c.(18265-18267)tCa>tTa, p.S6089L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1765](MUC16, 19, 9069366, 9069366, MISSENSE, SNP, G, A, g.chr19:9069366G>A, -, c.18080C>T, c.(18079-18081)tCc>tTc, p.S6027F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1766](MUC16, 19, 9069622, 9069622, MISSENSE, SNP, G, A, g.chr19:9069622G>A, -, c.17824C>T, c.(17824-17826)Ctt>Ttt, p.L5942F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1767](MUC16, 19, 9069754, 9069754, MISSENSE, SNP, G, A, g.chr19:9069754G>A, -, c.17692C>T, c.(17692-17694)Cca>Tca, p.P5898S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1768](MUC16, 19, 9069821, 9069821, SILENT, SNP, G, A, g.chr19:9069821G>A, -, c.17625C>T, c.(17623-17625)acC>acT, p.T5875T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1769](MUC16, 19, 9070255, 9070255, MISSENSE, SNP, C, T, g.chr19:9070255C>T, -, c.17191G>A, c.(17191-17193)Gaa>Aaa, p.E5731K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[176](MUC16, 19, 9085933, 9085933, MISSENSE, SNP, G, T, g.chr19:9085933G>T, -, c.5882C>A, c.(5881-5883)cCc>cAc, p.P1961H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1770](MUC16, 19, 9070360, 9070360, MISSENSE, SNP, C, T, g.chr19:9070360C>T, -, c.17086G>A, c.(17086-17088)Gag>Aag, p.E5696K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1771](MUC16, 19, 9070509, 9070509, MISSENSE, SNP, G, A, g.chr19:9070509G>A, -, c.16937C>T, c.(16936-16938)tCc>tTc, p.S5646F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1772](MUC16, 19, 9070533, 9070533, MISSENSE, SNP, G, A, g.chr19:9070533G>A, -, c.16913C>T, c.(16912-16914)tCc>tTc, p.S5638F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1773](MUC16, 19, 9071252, 9071252, SILENT, SNP, G, A, g.chr19:9071252G>A, -, c.16194C>T, c.(16192-16194)atC>atT, p.I5398I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1774](MUC16, 19, 9071513, 9071513, SILENT, SNP, G, A, g.chr19:9071513G>A, -, c.15933C>T, c.(15931-15933)acC>acT, p.T5311T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1775](MUC16, 19, 9071765, 9071765, SILENT, SNP, G, A, g.chr19:9071765G>A, -, c.15681C>T, c.(15679-15681)gtC>gtT, p.V5227V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1776](MUC16, 19, 9071953, 9071953, MISSENSE, SNP, G, A, g.chr19:9071953G>A, -, c.15493C>T, c.(15493-15495)Cct>Tct, p.P5165S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1777](MUC16, 19, 9072087, 9072087, MISSENSE, SNP, G, A, g.chr19:9072087G>A, -, c.15359C>T, c.(15358-15360)tCt>tTt, p.S5120F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1778](MUC16, 19, 9072128, 9072128, SILENT, SNP, G, A, g.chr19:9072128G>A, -, c.15318C>T, c.(15316-15318)gcC>gcT, p.A5106A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1779](MUC16, 19, 9072407, 9072407, SILENT, SNP, C, T, g.chr19:9072407C>T, -, c.15039G>A, c.(15037-15039)ttG>ttA, p.L5013L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[177](MUC16, 19, 9088011, 9088011, SILENT, SNP, G, T, g.chr19:9088011G>T, -, c.3804C>A, c.(3802-3804)acC>acA, p.T1268T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1780](MUC16, 19, 9072414, 9072414, MISSENSE, SNP, G, A, g.chr19:9072414G>A, -, c.15032C>T, c.(15031-15033)tCa>tTa, p.S5011L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1781](MUC16, 19, 9073656, 9073656, MISSENSE, SNP, G, A, g.chr19:9073656G>A, -, c.13790C>T, c.(13789-13791)tCc>tTc, p.S4597F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1782](MUC16, 19, 9073721, 9073721, SILENT, SNP, C, T, g.chr19:9073721C>T, -, c.13725G>A, c.(13723-13725)ggG>ggA, p.G4575G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1783](MUC16, 19, 9074222, 9074222, SILENT, SNP, G, A, g.chr19:9074222G>A, -, c.13224C>T, c.(13222-13224)acC>acT, p.T4408T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1784](MUC16, 19, 9074263, 9074263, MISSENSE, SNP, C, T, g.chr19:9074263C>T, -, c.13183G>A, c.(13183-13185)Gga>Aga, p.G4395R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1785](MUC16, 19, 9074867, 9074867, SILENT, SNP, G, A, g.chr19:9074867G>A, -, c.12579C>T, c.(12577-12579)ttC>ttT, p.F4193F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1786](MUC16, 19, 9074991, 9074991, MISSENSE, SNP, G, A, g.chr19:9074991G>A, -, c.12455C>T, c.(12454-12456)tCt>tTt, p.S4152F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1787](MUC16, 19, 9075173, 9075173, MISSENSE, SNP, C, T, g.chr19:9075173C>T, -, c.12273G>A, c.(12271-12273)atG>atA, p.M4091I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1788](MUC16, 19, 9075287, 9075287, SILENT, SNP, G, A, g.chr19:9075287G>A, -, c.12159C>T, c.(12157-12159)tcC>tcT, p.S4053S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1789](MUC16, 19, 9075383, 9075383, SILENT, SNP, G, A, g.chr19:9075383G>A, -, c.12063C>T, c.(12061-12063)agC>agT, p.S4021S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[178](MUC16, 19, 9047175, 9047175, MISSENSE, SNP, C, T, g.chr19:9047175C>T, -, c.34456G>A, c.(34456-34458)Gag>Aag, p.E11486K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1790](MUC16, 19, 9075484, 9075484, MISSENSE, SNP, C, T, g.chr19:9075484C>T, -, c.11962G>A, c.(11962-11964)Gaa>Aaa, p.E3988K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1791](MUC16, 19, 9076695, 9076695, MISSENSE, SNP, G, A, g.chr19:9076695G>A, -, c.10751C>T, c.(10750-10752)tCt>tTt, p.S3584F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1792](MUC16, 19, 9077159, 9077159, NONSENSE, SNP, C, T, g.chr19:9077159C>T, -, c.10287G>A, c.(10285-10287)tgG>tgA, p.W3429*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1793](MUC16, 19, 9077764, 9077764, MISSENSE, SNP, G, A, g.chr19:9077764G>A, -, c.9682C>T, c.(9682-9684)Cct>Tct, p.P3228S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[1794](MUC16, 19, 9082364, 9082364, MISSENSE, SNP, G, A, g.chr19:9082364G>A, -, c.9451C>T, c.(9451-9453)Cct>Tct, p.P3151S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1795](MUC16, 19, 9082505, 9082505, MISSENSE, SNP, C, T, g.chr19:9082505C>T, -, c.9310G>A, c.(9310-9312)Gag>Aag, p.E3104K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1796](MUC16, 19, 9082626, 9082626, SILENT, SNP, C, T, g.chr19:9082626C>T, -, c.9189G>A, c.(9187-9189)agG>agA, p.R3063R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1797](MUC16, 19, 9082977, 9082977, SILENT, SNP, C, T, g.chr19:9082977C>T, -, c.8838G>A, c.(8836-8838)aaG>aaA, p.K2946K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1798](MUC16, 19, 9083067, 9083067, SILENT, SNP, G, A, g.chr19:9083067G>A, -, c.8748C>T, c.(8746-8748)acC>acT, p.T2916T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1799](MUC16, 19, 9083611, 9083611, MISSENSE, SNP, G, A, g.chr19:9083611G>A, -, c.8204C>T, c.(8203-8205)cCa>cTa, p.P2735L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[179](MUC16, 19, 9061857, 9061857, MISSENSE, SNP, C, T, g.chr19:9061857C>T, -, c.25589G>A, c.(25588-25590)gGa>gAa, p.G8530E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[17](MUC16, 19, 9047571, 9047571, MISSENSE, SNP, G, A, g.chr19:9047571G>A, -, c.34060C>T, c.(34060-34062)Cct>Tct, p.P11354S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1800](MUC16, 19, 9083644, 9083644, MISSENSE, SNP, G, A, g.chr19:9083644G>A, -, c.8171C>T, c.(8170-8172)cCt>cTt, p.P2724L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1801](MUC16, 19, 9084263, 9084263, MISSENSE, SNP, C, T, g.chr19:9084263C>T, -, c.7552G>A, c.(7552-7554)Ggc>Agc, p.G2518S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1802](MUC16, 19, 9084500, 9084500, MISSENSE, SNP, C, T, g.chr19:9084500C>T, -, c.7315G>A, c.(7315-7317)Ggg>Agg, p.G2439R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1803](MUC16, 19, 9084665, 9084665, MISSENSE, SNP, C, T, g.chr19:9084665C>T, -, c.7150G>A, c.(7150-7152)Gat>Aat, p.D2384N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1804](MUC16, 19, 9085498, 9085498, MISSENSE, SNP, G, A, g.chr19:9085498G>A, -, c.6317C>T, c.(6316-6318)cCa>cTa, p.P2106L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1805](MUC16, 19, 9085504, 9085504, MISSENSE, SNP, C, T, g.chr19:9085504C>T, -, c.6311G>A, c.(6310-6312)aGa>aAa, p.R2104K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1806](MUC16, 19, 9085580, 9085580, MISSENSE, SNP, C, T, g.chr19:9085580C>T, -, c.6235G>A, c.(6235-6237)Ggg>Agg, p.G2079R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1807](MUC16, 19, 9085734, 9085734, SILENT, SNP, G, A, g.chr19:9085734G>A, -, c.6081C>T, c.(6079-6081)tcC>tcT, p.S2027S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1808](MUC16, 19, 9085995, 9085995, SILENT, SNP, G, A, g.chr19:9085995G>A, -, c.5820C>T, c.(5818-5820)tcC>tcT, p.S1940S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1809](MUC16, 19, 9086464, 9086464, MISSENSE, SNP, G, A, g.chr19:9086464G>A, -, c.5351C>T, c.(5350-5352)tCt>tTt, p.S1784F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[180](MUC16, 19, 8999426, 8999426, SILENT, SNP, G, T, g.chr19:8999426G>T, -, c.40749C>A, c.(40747-40749)ccC>ccA, p.P13583P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1810](MUC16, 19, 9086521, 9086521, MISSENSE, SNP, C, T, g.chr19:9086521C>T, -, c.5294G>A, c.(5293-5295)gGc>gAc, p.G1765D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1811](MUC16, 19, 9086960, 9086960, MISSENSE, SNP, C, T, g.chr19:9086960C>T, -, c.4855G>A, c.(4855-4857)Gag>Aag, p.E1619K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1812](MUC16, 19, 9087344, 9087344, MISSENSE, SNP, G, A, g.chr19:9087344G>A, -, c.4471C>T, c.(4471-4473)Cct>Tct, p.P1491S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1813](MUC16, 19, 9087697, 9087697, MISSENSE, SNP, G, A, g.chr19:9087697G>A, -, c.4118C>T, c.(4117-4119)tCa>tTa, p.S1373L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1814](MUC16, 19, 9087887, 9087887, MISSENSE, SNP, G, A, g.chr19:9087887G>A, -, c.3928C>T, c.(3928-3930)Cct>Tct, p.P1310S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1815](MUC16, 19, 9088430, 9088430, SILENT, SNP, G, A, g.chr19:9088430G>A, -, c.3385C>T, c.(3385-3387)Ctg>Ttg, p.L1129L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1816](MUC16, 19, 9088726, 9088726, MISSENSE, SNP, G, A, g.chr19:9088726G>A, -, c.3089C>T, c.(3088-3090)cCa>cTa, p.P1030L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1817](MUC16, 19, 9088839, 9088839, SILENT, SNP, G, A, g.chr19:9088839G>A, -, c.2976C>T, c.(2974-2976)ctC>ctT, p.L992L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1818](MUC16, 19, 9089883, 9089883, SILENT, SNP, C, T, g.chr19:9089883C>T, -, c.1932G>A, c.(1930-1932)acG>acA, p.T644T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1819](MUC16, 19, 9089917, 9089917, MISSENSE, SNP, G, A, g.chr19:9089917G>A, -, c.1898C>T, c.(1897-1899)tCa>tTa, p.S633L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[181](MUC16, 19, 9038404, 9038404, MISSENSE, SNP, G, A, g.chr19:9038404G>A, -, c.36115C>T, c.(36115-36117)Cgg>Tgg, p.R12039W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1820](MUC16, 19, 9090556, 9090556, MISSENSE, SNP, G, A, g.chr19:9090556G>A, -, c.1259C>T, c.(1258-1260)aCc>aTc, p.T420I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1821](MUC16, 19, 9090630, 9090630, SILENT, SNP, G, A, g.chr19:9090630G>A, -, c.1185C>T, c.(1183-1185)acC>acT, p.T395T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1822](MUC16, 19, 9091388, 9091388, MISSENSE, SNP, C, T, g.chr19:9091388C>T, -, c.427G>A, c.(427-429)Gaa>Aaa, p.E143K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1823](MUC16, 19, 9091556, 9091556, MISSENSE, SNP, G, A, g.chr19:9091556G>A, -, c.259C>T, c.(259-261)Cct>Tct, p.P87S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1824](MUC16, 19, 9091567, 9091567, MISSENSE, SNP, G, A, g.chr19:9091567G>A, -, c.248C>T, c.(247-249)tCc>tTc, p.S83F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1825](MUC16, 19, 9076527, 9076527, MISSENSE, SNP, G, A, g.chr19:9076527G>A, -, c.10919C>T, c.(10918-10920)aCc>aTc, p.T3640I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1826](MUC16, 19, 9071650, 9071650, MISSENSE, SNP, C, T, g.chr19:9071650C>T, -, c.15796G>A, c.(15796-15798)Gaa>Aaa, p.E5266K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1827](MUC16, 19, 9059723, 9059723, SILENT, SNP, G, A, g.chr19:9059723G>A, -, c.27723C>T, c.(27721-27723)gtC>gtT, p.V9241V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1828](MUC16, 19, 9067233, 9067233, MISSENSE, SNP, C, T, g.chr19:9067233C>T, -, c.20213G>A, c.(20212-20214)cGa>cAa, p.R6738Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1829](MUC16, 19, 9070090, 9070090, MISSENSE, SNP, C, T, g.chr19:9070090C>T, -, c.17356G>A, c.(17356-17358)Gac>Aac, p.D5786N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[182](MUC16, 19, 9062146, 9062146, MISSENSE, SNP, T, G, g.chr19:9062146T>G, -, c.25300A>C, c.(25300-25302)Agc>Cgc, p.S8434R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1830](MUC16, 19, 9072845, 9072845, MISSENSE, SNP, C, T, g.chr19:9072845C>T, -, c.14601G>A, c.(14599-14601)atG>atA, p.M4867I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1831](MUC16, 19, 9076180, 9076180, MISSENSE, SNP, C, T, g.chr19:9076180C>T, -, c.11266G>A, c.(11266-11268)Ggg>Agg, p.G3756R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1832](MUC16, 19, 9056850, 9056850, MISSENSE, SNP, G, A, g.chr19:9056850G>A, -, c.30596C>T, c.(30595-30597)tCc>tTc, p.S10199F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1833](MUC16, 19, 9076539, 9076539, MISSENSE, SNP, G, A, g.chr19:9076539G>A, -, c.10907C>T, c.(10906-10908)aCt>aTt, p.T3636I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1834](MUC16, 19, 9089680, 9089680, MISSENSE, SNP, G, A, g.chr19:9089680G>A, -, c.2135C>T, c.(2134-2136)cCa>cTa, p.P712L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1835](MUC16, 19, 8999499, 8999499, MISSENSE, SNP, C, T, g.chr19:8999499C>T, -, c.40676G>A, c.(40675-40677)aGc>aAc, p.S13559N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1836](MUC16, 19, 9014198, 9014198, MISSENSE, SNP, G, A, g.chr19:9014198G>A, -, c.38450C>T, c.(38449-38451)aCc>aTc, p.T12817I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1837](MUC16, 19, 9047124, 9047124, MISSENSE, SNP, G, A, g.chr19:9047124G>A, -, c.34507C>T, c.(34507-34509)Ccc>Tcc, p.P11503S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1838](MUC16, 19, 9048113, 9048113, MISSENSE, SNP, G, A, g.chr19:9048113G>A, -, c.33518C>T, c.(33517-33519)tCt>tTt, p.S11173F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1839](MUC16, 19, 9049971, 9049971, MISSENSE, SNP, G, A, g.chr19:9049971G>A, -, c.31660C>T, c.(31660-31662)Ccc>Tcc, p.P10554S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[183](MUC16, 19, 9067484, 9067484, SILENT, SNP, G, A, g.chr19:9067484G>A, -, c.19962C>T, c.(19960-19962)tcC>tcT, p.S6654S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1840](MUC16, 19, 9063387, 9063387, MISSENSE, SNP, G, A, g.chr19:9063387G>A, -, c.24059C>T, c.(24058-24060)tCa>tTa, p.S8020L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1841](MUC16, 19, 9063570, 9063570, NONSENSE, SNP, C, T, g.chr19:9063570C>T, -, c.23876G>A, c.(23875-23877)tGg>tAg, p.W7959*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1842](MUC16, 19, 9063956, 9063956, SILENT, SNP, G, A, g.chr19:9063956G>A, -, c.23490C>T, c.(23488-23490)acC>acT, p.T7830T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[1843](MUC16, 19, 9064483, 9064483, NONSENSE, SNP, G, A, g.chr19:9064483G>A, -, c.22963C>T, c.(22963-22965)Cag>Tag, p.Q7655*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1844](MUC16, 19, 9070231, 9070231, MISSENSE, SNP, C, T, g.chr19:9070231C>T, -, c.17215G>A, c.(17215-17217)Gat>Aat, p.D5739N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1845](MUC16, 19, 9070515, 9070515, MISSENSE, SNP, G, A, g.chr19:9070515G>A, -, c.16931C>T, c.(16930-16932)cCt>cTt, p.P5644L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1846](MUC16, 19, 9070955, 9070955, SILENT, SNP, C, T, g.chr19:9070955C>T, -, c.16491G>A, c.(16489-16491)aaG>aaA, p.K5497K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1847](MUC16, 19, 9074625, 9074625, MISSENSE, SNP, G, A, g.chr19:9074625G>A, -, c.12821C>T, c.(12820-12822)cCa>cTa, p.P4274L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1848](MUC16, 19, 9076269, 9076269, MISSENSE, SNP, G, A, g.chr19:9076269G>A, -, c.11177C>T, c.(11176-11178)tCc>tTc, p.S3726F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1849](MUC16, 19, 9080501, 9080501, MISSENSE, SNP, C, T, g.chr19:9080501C>T, -, c.9530G>A, c.(9529-9531)gGa>gAa, p.G3177E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[184](MUC16, 19, 9069346, 9069346, MISSENSE, SNP, G, T, g.chr19:9069346G>T, -, c.18100C>A, c.(18100-18102)Cag>Aag, p.Q6034K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[1850](MUC16, 19, 9083098, 9083098, MISSENSE, SNP, G, A, g.chr19:9083098G>A, -, c.8717C>T, c.(8716-8718)tCt>tTt, p.S2906F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1851](MUC16, 19, 9085435, 9085435, MISSENSE, SNP, G, A, g.chr19:9085435G>A, -, c.6380C>T, c.(6379-6381)tCg>tTg, p.S2127L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1852](MUC16, 19, 9085591, 9085591, MISSENSE, SNP, G, A, g.chr19:9085591G>A, -, c.6224C>T, c.(6223-6225)tCa>tTa, p.S2075L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1853](MUC16, 19, 9085846, 9085846, MISSENSE, SNP, A, T, g.chr19:9085846A>T, -, c.5969T>A, c.(5968-5970)gTt>gAt, p.V1990D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1854](MUC16, 19, 9086684, 9086684, MISSENSE, SNP, C, T, g.chr19:9086684C>T, -, c.5131G>A, c.(5131-5133)Gga>Aga, p.G1711R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1855](MUC16, 19, 9087601, 9087601, MISSENSE, SNP, G, A, g.chr19:9087601G>A, -, c.4214C>T, c.(4213-4215)tCa>tTa, p.S1405L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1856](MUC16, 19, 9087899, 9087899, MISSENSE, SNP, C, T, g.chr19:9087899C>T, -, c.3916G>A, c.(3916-3918)Gag>Aag, p.E1306K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1857](MUC16, 19, 9088159, 9088159, MISSENSE, SNP, G, A, g.chr19:9088159G>A, -, c.3656C>T, c.(3655-3657)cCc>cTc, p.P1219L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1858](MUC16, 19, 9089035, 9089035, MISSENSE, SNP, G, A, g.chr19:9089035G>A, -, c.2780C>T, c.(2779-2781)tCa>tTa, p.S927L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1859](MUC16, 19, 9091661, 9091661, MISSENSE, SNP, C, T, g.chr19:9091661C>T, -, c.154G>A, c.(154-156)Gaa>Aaa, p.E52K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[185](MUC16, 19, 9071877, 9071877, MISSENSE, SNP, G, T, g.chr19:9071877G>T, -, c.15569C>A, c.(15568-15570)cCt>cAt, p.P5190H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1860](MUC16, 19, 9049259, 9049259, MISSENSE, SNP, C, A, g.chr19:9049259C>A, -, c.32372G>T, c.(32371-32373)cGg>cTg, p.R10791L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1861](MUC16, 19, 9050108, 9050108, MISSENSE, SNP, G, T, g.chr19:9050108G>T, -, c.31523C>A, c.(31522-31524)cCc>cAc, p.P10508H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1862](MUC16, 19, 9058976, 9058976, SILENT, SNP, G, T, g.chr19:9058976G>T, -, c.28470C>A, c.(28468-28470)ccC>ccA, p.P9490P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1863](MUC16, 19, 9064509, 9064509, MISSENSE, SNP, C, A, g.chr19:9064509C>A, -, c.22937G>T, c.(22936-22938)tGg>tTg, p.W7646L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1864](MUC16, 19, 9067654, 9067654, MISSENSE, SNP, C, A, g.chr19:9067654C>A, -, c.19792G>T, c.(19792-19794)Ggg>Tgg, p.G6598W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1865](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1866](MUC16, 19, 9089293, 9089293, MISSENSE, SNP, G, T, g.chr19:9089293G>T, -, c.2522C>A, c.(2521-2523)cCa>cAa, p.P841Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1867](MUC16, 19, 9090379, 9090379, MISSENSE, SNP, G, T, g.chr19:9090379G>T, -, c.1436C>A, c.(1435-1437)cCa>cAa, p.P479Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1868](MUC16, 19, 8998736, 8998736, MISSENSE, SNP, C, T, g.chr19:8998736C>T, -, c.40847G>A, c.(40846-40848)gGa>gAa, p.G13616E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1869](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[186](MUC16, 19, 9091524, 9091524, SILENT, SNP, G, T, g.chr19:9091524G>T, -, c.291C>A, c.(289-291)tcC>tcA, p.S97S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1870](MUC16, 19, 9064126, 9064126, MISSENSE, SNP, C, A, g.chr19:9064126C>A, -, c.23320G>T, c.(23320-23322)Ggg>Tgg, p.G7774W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1871](MUC16, 19, 9070181, 9070181, MISSENSE, SNP, C, A, g.chr19:9070181C>A, -, c.17265G>T, c.(17263-17265)atG>atT, p.M5755I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1872](MUC16, 19, 9077804, 9077804, SILENT, SNP, G, T, g.chr19:9077804G>T, -, c.9642C>A, c.(9640-9642)ccC>ccA, p.P3214P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1873](MUC16, 19, 9086664, 9086664, MISSENSE, SNP, C, A, g.chr19:9086664C>A, -, c.5151G>T, c.(5149-5151)aaG>aaT, p.K1717N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1874](MUC16, 19, 9088011, 9088011, SILENT, SNP, G, T, g.chr19:9088011G>T, -, c.3804C>A, c.(3802-3804)acC>acA, p.T1268T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1875](MUC16, 19, 8969281, 8969281, MISSENSE, SNP, C, T, g.chr19:8969281C>T, -, c.43063G>A, c.(43063-43065)Gat>Aat, p.D14355N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1876](MUC16, 19, 8999489, 8999489, SILENT, SNP, C, A, g.chr19:8999489C>A, -, c.40686G>T, c.(40684-40686)ctG>ctT, p.L13562L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1877](MUC16, 19, 9050036, 9050036, MISSENSE, SNP, G, T, g.chr19:9050036G>T, -, c.31595C>A, c.(31594-31596)cCt>cAt, p.P10532H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1878](MUC16, 19, 9050121, 9050121, NONSENSE, SNP, C, A, g.chr19:9050121C>A, -, c.31510G>T, c.(31510-31512)Gga>Tga, p.G10504*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1879](MUC16, 19, 9067605, 9067605, NONSENSE, SNP, G, T, g.chr19:9067605G>T, -, c.19841C>A, c.(19840-19842)tCa>tAa, p.S6614*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[187](MUC16, 19, 9072100, 9072100, MISSENSE, SNP, C, T, g.chr19:9072100C>T, -, c.15346G>A, c.(15346-15348)Gaa>Aaa, p.E5116K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1880](MUC16, 19, 9087366, 9087366, MISSENSE, SNP, C, A, g.chr19:9087366C>A, -, c.4449G>T, c.(4447-4449)atG>atT, p.M1483I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1881](MUC16, 19, 9008331, 9008331, MISSENSE, SNP, C, A, g.chr19:9008331C>A, -, c.39221G>T, c.(39220-39222)gGg>gTg, p.G13074V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1882](MUC16, 19, 9017469, 9017469, MISSENSE, SNP, G, T, g.chr19:9017469G>T, -, c.37855C>A, c.(37855-37857)Cgt>Agt, p.R12619S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1883](MUC16, 19, 9020025, 9020025, SILENT, SNP, C, A, g.chr19:9020025C>A, -, c.37470G>T, c.(37468-37470)ctG>ctT, p.L12490L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1884](MUC16, 19, 9050228, 9050228, MISSENSE, SNP, C, A, g.chr19:9050228C>A, -, c.31403G>T, c.(31402-31404)gGg>gTg, p.G10468V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1885](MUC16, 19, 9061892, 9061892, SILENT, SNP, G, T, g.chr19:9061892G>T, -, c.25554C>A, c.(25552-25554)acC>acA, p.T8518T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1886](MUC16, 19, 9063824, 9063824, SILENT, SNP, G, T, g.chr19:9063824G>T, -, c.23622C>A, c.(23620-23622)ccC>ccA, p.P7874P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1887](MUC16, 19, 9064143, 9064143, MISSENSE, SNP, G, T, g.chr19:9064143G>T, -, c.23303C>A, c.(23302-23304)cCt>cAt, p.P7768H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1888](MUC16, 19, 9064231, 9064231, NONSENSE, SNP, C, A, g.chr19:9064231C>A, -, c.23215G>T, c.(23215-23217)Gga>Tga, p.G7739*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1889](MUC16, 19, 9065753, 9065753, MISSENSE, SNP, C, A, g.chr19:9065753C>A, -, c.21693G>T, c.(21691-21693)ttG>ttT, p.L7231F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[188](MUC16, 19, 9073985, 9073985, SILENT, SNP, G, A, g.chr19:9073985G>A, -, c.13461C>T, c.(13459-13461)acC>acT, p.T4487T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1890](MUC16, 19, 9069935, 9069935, SILENT, SNP, G, T, g.chr19:9069935G>T, -, c.17511C>A, c.(17509-17511)ccC>ccA, p.P5837P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1891](MUC16, 19, 9077379, 9077379, MISSENSE, SNP, C, A, g.chr19:9077379C>A, -, c.10067G>T, c.(10066-10068)gGg>gTg, p.G3356V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1892](MUC16, 19, 9082426, 9082426, MISSENSE, SNP, G, T, g.chr19:9082426G>T, -, c.9389C>A, c.(9388-9390)cCc>cAc, p.P3130H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1893](MUC16, 19, 9082454, 9082454, MISSENSE, SNP, G, T, g.chr19:9082454G>T, -, c.9361C>A, c.(9361-9363)Cca>Aca, p.P3121T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1894](MUC16, 19, 9088886, 9088886, MISSENSE, SNP, C, A, g.chr19:9088886C>A, -, c.2929G>T, c.(2929-2931)Ggg>Tgg, p.G977W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1895](MUC16, 19, 9088900, 9088900, MISSENSE, SNP, G, T, g.chr19:9088900G>T, -, c.2915C>A, c.(2914-2916)cCc>cAc, p.P972H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1896](MUC16, 19, 9013882, 9013882, SILENT, SNP, C, T, g.chr19:9013882C>T, -, c.38508G>A, c.(38506-38508)ggG>ggA, p.G12836G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1897](MUC16, 19, 9019338, 9019338, MISSENSE, SNP, G, A, g.chr19:9019338G>A, -, c.37549C>T, c.(37549-37551)Cct>Tct, p.P12517S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1898](MUC16, 19, 9045613, 9045613, SILENT, SNP, G, A, g.chr19:9045613G>A, -, c.36018C>T, c.(36016-36018)acC>acT, p.T12006T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1899](MUC16, 19, 9045877, 9045877, NONSENSE, SNP, C, T, g.chr19:9045877C>T, -, c.35754G>A, c.(35752-35754)tgG>tgA, p.W11918*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[189](MUC16, 19, 9088886, 9088886, MISSENSE, SNP, C, A, g.chr19:9088886C>A, -, c.2929G>T, c.(2929-2931)Ggg>Tgg, p.G977W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[18](MUC16, 19, 9075901, 9075901, MISSENSE, SNP, T, C, g.chr19:9075901T>C, -, c.11545A>G, c.(11545-11547)Act>Gct, p.T3849A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1900](MUC16, 19, 9046043, 9046043, MISSENSE, SNP, G, A, g.chr19:9046043G>A, -, c.35588C>T, c.(35587-35589)cCa>cTa, p.P11863L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1901](MUC16, 19, 9048241, 9048241, SILENT, SNP, G, A, g.chr19:9048241G>A, -, c.33390C>T, c.(33388-33390)gcC>gcT, p.A11130A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1902](MUC16, 19, 9057093, 9057093, MISSENSE, SNP, G, A, g.chr19:9057093G>A, -, c.30353C>T, c.(30352-30354)tCc>tTc, p.S10118F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1903](MUC16, 19, 9060940, 9060940, MISSENSE, SNP, G, A, g.chr19:9060940G>A, -, c.26506C>T, c.(26506-26508)Cct>Tct, p.P8836S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1904](MUC16, 19, 9062601, 9062601, MISSENSE, SNP, G, A, g.chr19:9062601G>A, -, c.24845C>T, c.(24844-24846)tCc>tTc, p.S8282F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1905](MUC16, 19, 9063573, 9063573, MISSENSE, SNP, G, A, g.chr19:9063573G>A, -, c.23873C>T, c.(23872-23874)tCa>tTa, p.S7958L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1906](MUC16, 19, 9063963, 9063963, MISSENSE, SNP, G, A, g.chr19:9063963G>A, -, c.23483C>T, c.(23482-23484)tCc>tTc, p.S7828F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1907](MUC16, 19, 9067342, 9067342, MISSENSE, SNP, G, A, g.chr19:9067342G>A, -, c.20104C>T, c.(20104-20106)Cca>Tca, p.P6702S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1908](MUC16, 19, 9069097, 9069097, MISSENSE, SNP, C, T, g.chr19:9069097C>T, -, c.18349G>A, c.(18349-18351)Gat>Aat, p.D6117N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1909](MUC16, 19, 9070394, 9070394, SILENT, SNP, C, T, g.chr19:9070394C>T, -, c.17052G>A, c.(17050-17052)acG>acA, p.T5684T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[190](MUC16, 19, 9006662, 9006662, MISSENSE, SNP, C, T, g.chr19:9006662C>T, -, c.39586G>A, c.(39586-39588)Gag>Aag, p.E13196K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1910](MUC16, 19, 9071371, 9071371, MISSENSE, SNP, G, A, g.chr19:9071371G>A, -, c.16075C>T, c.(16075-16077)Ccc>Tcc, p.P5359S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1911](MUC16, 19, 9071723, 9071723, SILENT, SNP, G, A, g.chr19:9071723G>A, -, c.15723C>T, c.(15721-15723)tcC>tcT, p.S5241S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1912](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1913](MUC16, 19, 9072251, 9072251, SILENT, SNP, G, A, g.chr19:9072251G>A, -, c.15195C>T, c.(15193-15195)tcC>tcT, p.S5065S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1914](MUC16, 19, 9072320, 9072320, SILENT, SNP, G, A, g.chr19:9072320G>A, -, c.15126C>T, c.(15124-15126)tcC>tcT, p.S5042S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1915](MUC16, 19, 9072763, 9072763, MISSENSE, SNP, G, A, g.chr19:9072763G>A, -, c.14683C>T, c.(14683-14685)Cct>Tct, p.P4895S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1916](MUC16, 19, 9073527, 9073527, MISSENSE, SNP, G, T, g.chr19:9073527G>T, -, c.13919C>A, c.(13918-13920)tCt>tAt, p.S4640Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1917](MUC16, 19, 9073586, 9073586, SILENT, SNP, G, A, g.chr19:9073586G>A, -, c.13860C>T, c.(13858-13860)atC>atT, p.I4620I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1918](MUC16, 19, 9074665, 9074665, MISSENSE, SNP, G, A, g.chr19:9074665G>A, -, c.12781C>T, c.(12781-12783)Cct>Tct, p.P4261S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1919](MUC16, 19, 9075414, 9075414, MISSENSE, SNP, G, A, g.chr19:9075414G>A, -, c.12032C>T, c.(12031-12033)tCc>tTc, p.S4011F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[191](MUC16, 19, 9046505, 9046505, MISSENSE, SNP, G, A, g.chr19:9046505G>A, -, c.35126C>T, c.(35125-35127)tCc>tTc, p.S11709F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[1920](MUC16, 19, 9077766, 9077766, MISSENSE, SNP, G, A, g.chr19:9077766G>A, -, c.9680C>T, c.(9679-9681)tCt>tTt, p.S3227F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1921](MUC16, 19, 9080501, 9080501, MISSENSE, SNP, C, T, g.chr19:9080501C>T, -, c.9530G>A, c.(9529-9531)gGa>gAa, p.G3177E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1922](MUC16, 19, 9083076, 9083076, SILENT, SNP, G, A, g.chr19:9083076G>A, -, c.8739C>T, c.(8737-8739)tcC>tcT, p.S2913S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1923](MUC16, 19, 9089120, 9089120, MISSENSE, SNP, G, A, g.chr19:9089120G>A, -, c.2695C>T, c.(2695-2697)Ccc>Tcc, p.P899S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1924](MUC16, 19, 9089446, 9089446, MISSENSE, SNP, G, A, g.chr19:9089446G>A, -, c.2369C>T, c.(2368-2370)tCc>tTc, p.S790F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[1925](MUC16, 19, 9089866, 9089866, MISSENSE, SNP, G, A, g.chr19:9089866G>A, -, c.1949C>T, c.(1948-1950)tCc>tTc, p.S650F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1926](MUC16, 19, 9089986, 9089986, MISSENSE, SNP, G, A, g.chr19:9089986G>A, -, c.1829C>T, c.(1828-1830)tCa>tTa, p.S610L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1927](MUC16, 19, 9090653, 9090653, MISSENSE, SNP, C, T, g.chr19:9090653C>T, -, c.1162G>A, c.(1162-1164)Gaa>Aaa, p.E388K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1928](MUC16, 19, 9091052, 9091052, MISSENSE, SNP, C, T, g.chr19:9091052C>T, -, c.763G>A, c.(763-765)Gaa>Aaa, p.E255K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1929](MUC16, 19, 9059329, 9059329, MISSENSE, SNP, G, A, g.chr19:9059329G>A, -, c.28117C>T, c.(28117-28119)Cct>Tct, p.P9373S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[192](MUC16, 19, 9085301, 9085301, MISSENSE, SNP, C, T, g.chr19:9085301C>T, -, c.6514G>A, c.(6514-6516)Gcc>Acc, p.A2172T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1930](MUC16, 19, 9090179, 9090179, MISSENSE, SNP, C, T, g.chr19:9090179C>T, -, c.1636G>A, c.(1636-1638)Gag>Aag, p.E546K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1931](MUC16, 19, 9057936, 9057936, MISSENSE, SNP, G, A, g.chr19:9057936G>A, -, c.29510C>T, c.(29509-29511)aCc>aTc, p.T9837I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1932](MUC16, 19, 9088904, 9088904, MISSENSE, SNP, T, C, g.chr19:9088904T>C, -, c.2911A>G, c.(2911-2913)Agt>Ggt, p.S971G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1933](MUC16, 19, 9046738, 9046738, SILENT, SNP, C, T, g.chr19:9046738C>T, -, c.34893G>A, c.(34891-34893)gtG>gtA, p.V11631V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1934](MUC16, 19, 9056720, 9056720, SILENT, SNP, C, T, g.chr19:9056720C>T, -, c.30726G>A, c.(30724-30726)ggG>ggA, p.G10242G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1935](MUC16, 19, 9057290, 9057290, SILENT, SNP, T, G, g.chr19:9057290T>G, -, c.30156A>C, c.(30154-30156)tcA>tcC, p.S10052S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1936](MUC16, 19, 9060457, 9060457, MISSENSE, SNP, T, C, g.chr19:9060457T>C, -, c.26989A>G, c.(26989-26991)Aca>Gca, p.T8997A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1937](MUC16, 19, 9065721, 9065721, MISSENSE, SNP, G, A, g.chr19:9065721G>A, -, c.21725C>T, c.(21724-21726)tCc>tTc, p.S7242F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1938](MUC16, 19, 9070856, 9070856, SILENT, SNP, G, A, g.chr19:9070856G>A, -, c.16590C>T, c.(16588-16590)tcC>tcT, p.S5530S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1939](MUC16, 19, 9073747, 9073747, MISSENSE, SNP, G, A, g.chr19:9073747G>A, -, c.13699C>T, c.(13699-13701)Cca>Tca, p.P4567S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[193](MUC16, 19, 8969346, 8969346, MISSENSE, SNP, G, T, g.chr19:8969346G>T, -, c.42998C>A, c.(42997-42999)cCa>cAa, p.P14333Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1940](MUC16, 19, 9080519, 9080519, MISSENSE, SNP, G, A, g.chr19:9080519G>A, -, c.9512C>T, c.(9511-9513)tCa>tTa, p.S3171L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1941](MUC16, 19, 9084051, 9084051, SILENT, SNP, T, C, g.chr19:9084051T>C, -, c.7764A>G, c.(7762-7764)gaA>gaG, p.E2588E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1942](MUC16, 19, 9085376, 9085376, MISSENSE, SNP, G, A, g.chr19:9085376G>A, -, c.6439C>T, c.(6439-6441)Cca>Tca, p.P2147S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1943](MUC16, 19, 9066695, 9066695, MISSENSE, SNP, C, T, g.chr19:9066695C>T, -, c.20751G>A, c.(20749-20751)atG>atA, p.M6917I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1944](MUC16, 19, 9074139, 9074139, MISSENSE, SNP, G, A, g.chr19:9074139G>A, -, c.13307C>T, c.(13306-13308)cCc>cTc, p.P4436L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1945](MUC16, 19, 9005636, 9005636, MISSENSE, SNP, C, A, g.chr19:9005636C>A, -, c.39770G>T, c.(39769-39771)tGg>tTg, p.W13257L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1946](MUC16, 19, 9046005, 9046005, MISSENSE, SNP, C, A, g.chr19:9046005C>A, -, c.35626G>T, c.(35626-35628)Ggc>Tgc, p.G11876C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1947](MUC16, 19, 9049941, 9049941, MISSENSE, SNP, C, T, g.chr19:9049941C>T, -, c.31690G>A, c.(31690-31692)Gaa>Aaa, p.E10564K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1948](MUC16, 19, 9057176, 9057176, SILENT, SNP, G, T, g.chr19:9057176G>T, -, c.30270C>A, c.(30268-30270)acC>acA, p.T10090T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[1949](MUC16, 19, 9060131, 9060131, SILENT, SNP, C, T, g.chr19:9060131C>T, -, c.27315G>A, c.(27313-27315)ggG>ggA, p.G9105G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[194](MUC16, 19, 8994484, 8994484, MISSENSE, SNP, C, A, g.chr19:8994484C>A, -, c.41408G>T, c.(41407-41409)cGg>cTg, p.R13803L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1950](MUC16, 19, 9062015, 9062015, SILENT, SNP, C, T, g.chr19:9062015C>T, -, c.25431G>A, c.(25429-25431)gcG>gcA, p.A8477A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1951](MUC16, 19, 9065364, 9065364, MISSENSE, SNP, C, T, g.chr19:9065364C>T, -, c.22082G>A, c.(22081-22083)aGa>aAa, p.R7361K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1952](MUC16, 19, 9066073, 9066073, MISSENSE, SNP, G, A, g.chr19:9066073G>A, -, c.21373C>T, c.(21373-21375)Cct>Tct, p.P7125S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1953](MUC16, 19, 9069398, 9069398, MISSENSE, SNP, C, A, g.chr19:9069398C>A, -, c.18048G>T, c.(18046-18048)atG>atT, p.M6016I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1954](MUC16, 19, 9072625, 9072625, MISSENSE, SNP, G, A, g.chr19:9072625G>A, -, c.14821C>T, c.(14821-14823)Cct>Tct, p.P4941S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1955](MUC16, 19, 9074658, 9074658, MISSENSE, SNP, G, T, g.chr19:9074658G>T, -, c.12788C>A, c.(12787-12789)cCa>cAa, p.P4263Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[1956](MUC16, 19, 9074867, 9074867, SILENT, SNP, G, A, g.chr19:9074867G>A, -, c.12579C>T, c.(12577-12579)ttC>ttT, p.F4193F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1957](MUC16, 19, 9076429, 9076429, MISSENSE, SNP, G, A, g.chr19:9076429G>A, -, c.11017C>T, c.(11017-11019)Ccc>Tcc, p.P3673S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1958](MUC16, 19, 9076674, 9076674, MISSENSE, SNP, G, A, g.chr19:9076674G>A, -, c.10772C>T, c.(10771-10773)tCc>tTc, p.S3591F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1959](MUC16, 19, 9077246, 9077246, SILENT, SNP, G, T, g.chr19:9077246G>T, -, c.10200C>A, c.(10198-10200)ccC>ccA, p.P3400P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[195](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[1960](MUC16, 19, 9085579, 9085579, MISSENSE, SNP, C, A, g.chr19:9085579C>A, -, c.6236G>T, c.(6235-6237)gGg>gTg, p.G2079V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1961](MUC16, 19, 9086131, 9086131, MISSENSE, SNP, G, A, g.chr19:9086131G>A, -, c.5684C>T, c.(5683-5685)tCc>tTc, p.S1895F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1962](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1963](MUC16, 19, 9091108, 9091108, MISSENSE, SNP, G, A, g.chr19:9091108G>A, -, c.707C>T, c.(706-708)tCc>tTc, p.S236F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1964](MUC16, 19, 9091470, 9091470, SILENT, SNP, C, T, g.chr19:9091470C>T, -, c.345G>A, c.(343-345)agG>agA, p.R115R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1965](MUC16, 19, 9088023, 9088023, SILENT, SNP, G, T, g.chr19:9088023G>T, -, c.3792C>A, c.(3790-3792)acC>acA, p.T1264T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1966](MUC16, 19, 9073306, 9073306, MISSENSE, SNP, C, A, g.chr19:9073306C>A, -, c.14140G>T, c.(14140-14142)Ggg>Tgg, p.G4714W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1967](MUC16, 19, 8996340, 8996340, SILENT, SNP, G, A, g.chr19:8996340G>A, -, c.41232C>T, c.(41230-41232)aaC>aaT, p.N13744N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1968](MUC16, 19, 9059447, 9059447, SILENT, SNP, G, A, g.chr19:9059447G>A, -, c.27999C>T, c.(27997-27999)atC>atT, p.I9333I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1969](MUC16, 19, 9017418, 9017418, SILENT, SNP, G, A, g.chr19:9017418G>A, -, c.37906C>T, c.(37906-37908)Ctg>Ttg, p.L12636L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[196](MUC16, 19, 9008193, 9008193, MISSENSE, SNP, C, A, g.chr19:9008193C>A, -, c.39359G>T, c.(39358-39360)cGg>cTg, p.R13120L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1970](MUC16, 19, 9043442, 9043442, NONSENSE, SNP, C, T, g.chr19:9043442C>T, -, c.36087G>A, c.(36085-36087)tgG>tgA, p.W12029*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1971](MUC16, 19, 9047148, 9047148, MISSENSE, SNP, G, A, g.chr19:9047148G>A, -, c.34483C>T, c.(34483-34485)Cct>Tct, p.P11495S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[1972](MUC16, 19, 9047352, 9047352, MISSENSE, SNP, C, T, g.chr19:9047352C>T, -, c.34279G>A, c.(34279-34281)Ggt>Agt, p.G11427S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1973](MUC16, 19, 9056341, 9056341, MISSENSE, SNP, T, G, g.chr19:9056341T>G, -, c.31105A>C, c.(31105-31107)Agc>Cgc, p.S10369R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1974](MUC16, 19, 9057364, 9057364, MISSENSE, SNP, G, A, g.chr19:9057364G>A, -, c.30082C>T, c.(30082-30084)Cct>Tct, p.P10028S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1975](MUC16, 19, 9059844, 9059844, MISSENSE, SNP, G, T, g.chr19:9059844G>T, -, c.27602C>A, c.(27601-27603)cCa>cAa, p.P9201Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1976](MUC16, 19, 9068444, 9068444, SILENT, SNP, G, A, g.chr19:9068444G>A, -, c.19002C>T, c.(19000-19002)atC>atT, p.I6334I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1977](MUC16, 19, 9077510, 9077510, SILENT, SNP, G, A, g.chr19:9077510G>A, -, c.9936C>T, c.(9934-9936)tcC>tcT, p.S3312S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1978](MUC16, 19, 9089000, 9089000, MISSENSE, SNP, T, A, g.chr19:9089000T>A, -, c.2815A>T, c.(2815-2817)Ata>Tta, p.I939L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1979](MUC16, 19, 9090748, 9090748, MISSENSE, SNP, G, A, g.chr19:9090748G>A, -, c.1067C>T, c.(1066-1068)tCc>tTc, p.S356F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[197](MUC16, 19, 9046638, 9046638, MISSENSE, SNP, G, T, g.chr19:9046638G>T, -, c.34993C>A, c.(34993-34995)Cat>Aat, p.H11665N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1980](MUC16, 19, 9048527, 9048527, MISSENSE, SNP, G, A, g.chr19:9048527G>A, -, c.33104C>T, c.(33103-33105)tCa>tTa, p.S11035L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1981](MUC16, 19, 9061664, 9061664, SILENT, SNP, G, A, g.chr19:9061664G>A, -, c.25782C>T, c.(25780-25782)ctC>ctT, p.L8594L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1982](MUC16, 19, 9064379, 9064379, SILENT, SNP, G, A, g.chr19:9064379G>A, -, c.23067C>T, c.(23065-23067)tcC>tcT, p.S7689S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1983](MUC16, 19, 9067623, 9067623, MISSENSE, SNP, G, A, g.chr19:9067623G>A, -, c.19823C>T, c.(19822-19824)tCg>tTg, p.S6608L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[1984](MUC16, 19, 9069895, 9069895, MISSENSE, SNP, G, A, g.chr19:9069895G>A, -, c.17551C>T, c.(17551-17553)Cct>Tct, p.P5851S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1985](MUC16, 19, 9075928, 9075928, MISSENSE, SNP, G, A, g.chr19:9075928G>A, -, c.11518C>T, c.(11518-11520)Cca>Tca, p.P3840S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1986](MUC16, 19, 9087897, 9087897, SILENT, SNP, C, T, g.chr19:9087897C>T, -, c.3918G>A, c.(3916-3918)gaG>gaA, p.E1306E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1987](MUC16, 19, 9089422, 9089422, MISSENSE, SNP, G, A, g.chr19:9089422G>A, -, c.2393C>T, c.(2392-2394)tCa>tTa, p.S798L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1988](MUC16, 19, 9020077, 9020077, MISSENSE, SNP, C, T, g.chr19:9020077C>T, -, c.37418G>A, c.(37417-37419)aGa>aAa, p.R12473K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[1989](MUC16, 19, 9049206, 9049206, NONSENSE, SNP, G, A, g.chr19:9049206G>A, -, c.32425C>T, c.(32425-32427)Cga>Tga, p.R10809*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[198](MUC16, 19, 9047652, 9047652, MISSENSE, SNP, C, A, g.chr19:9047652C>A, -, c.33979G>T, c.(33979-33981)Ggg>Tgg, p.G11327W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1990](MUC16, 19, 9050129, 9050129, MISSENSE, SNP, G, A, g.chr19:9050129G>A, -, c.31502C>T, c.(31501-31503)cCc>cTc, p.P10501L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1991](MUC16, 19, 9057378, 9057378, MISSENSE, SNP, G, A, g.chr19:9057378G>A, -, c.30068C>T, c.(30067-30069)tCt>tTt, p.S10023F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1992](MUC16, 19, 9057632, 9057632, SILENT, SNP, C, T, g.chr19:9057632C>T, -, c.29814G>A, c.(29812-29814)gtG>gtA, p.V9938V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1993](MUC16, 19, 9062543, 9062543, SILENT, SNP, G, A, g.chr19:9062543G>A, -, c.24903C>T, c.(24901-24903)aaC>aaT, p.N8301N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[1994](MUC16, 19, 9073956, 9073956, MISSENSE, SNP, A, C, g.chr19:9073956A>C, -, c.13490T>G, c.(13489-13491)tTg>tGg, p.L4497W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[1995](MUC16, 19, 9086857, 9086857, MISSENSE, SNP, C, T, g.chr19:9086857C>T, -, c.4958G>A, c.(4957-4959)gGa>gAa, p.G1653E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1996](MUC16, 19, 9091108, 9091108, MISSENSE, SNP, G, A, g.chr19:9091108G>A, -, c.707C>T, c.(706-708)tCc>tTc, p.S236F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1997](MUC16, 19, 9047904, 9047904, MISSENSE, SNP, C, T, g.chr19:9047904C>T, -, c.33727G>A, c.(33727-33729)Ggg>Agg, p.G11243R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[1998](MUC16, 19, 9075170, 9075170, SILENT, SNP, G, A, g.chr19:9075170G>A, -, c.12276C>T, c.(12274-12276)atC>atT, p.I4092I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[1999](MUC16, 19, 9077594, 9077594, SILENT, SNP, G, A, g.chr19:9077594G>A, -, c.9852C>T, c.(9850-9852)tcC>tcT, p.S3284S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[199](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[19](MUC16, 19, 9064628, 9064628, SILENT, SNP, C, T, g.chr19:9064628C>T, -, c.22818G>A, c.(22816-22818)agG>agA, p.R7606R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[1](MUC16, 19, 9091812, 9091812, START_CODON_SNP, SNP, C, A, g.chr19:9091812C>A, -, c.3G>T, c.(1-3)atG>atT, p.M1I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2000](MUC16, 19, 9083160, 9083160, SILENT, SNP, G, A, g.chr19:9083160G>A, -, c.8655C>T, c.(8653-8655)atC>atT, p.I2885I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2001](MUC16, 19, 9085017, 9085017, SILENT, SNP, G, A, g.chr19:9085017G>A, -, c.6798C>T, c.(6796-6798)ttC>ttT, p.F2266F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2002](MUC16, 19, 9088834, 9088834, MISSENSE, SNP, G, A, g.chr19:9088834G>A, -, c.2981C>T, c.(2980-2982)gCt>gTt, p.A994V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2003](MUC16, 19, 9014700, 9014700, MISSENSE, SNP, C, T, g.chr19:9014700C>T, -, c.38275G>A, c.(38275-38277)Gag>Aag, p.E12759K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2004](MUC16, 19, 9047714, 9047714, MISSENSE, SNP, G, A, g.chr19:9047714G>A, -, c.33917C>T, c.(33916-33918)gCc>gTc, p.A11306V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2005](MUC16, 19, 9067330, 9067330, MISSENSE, SNP, G, A, g.chr19:9067330G>A, -, c.20116C>T, c.(20116-20118)Cat>Tat, p.H6706Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[2006](MUC16, 19, 9070709, 9070709, SILENT, SNP, G, A, g.chr19:9070709G>A, -, c.16737C>T, c.(16735-16737)atC>atT, p.I5579I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[2007](MUC16, 19, 9049481, 9049481, MISSENSE, SNP, C, A, g.chr19:9049481C>A, -, c.32150G>T, c.(32149-32151)gGg>gTg, p.G10717V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2008](MUC16, 19, 9049481, 9049481, MISSENSE, SNP, C, A, g.chr19:9049481C>A, -, c.32150G>T, c.(32149-32151)gGg>gTg, p.G10717V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2009](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[200](MUC16, 19, 9056883, 9056883, MISSENSE, SNP, G, A, g.chr19:9056883G>A, -, c.30563C>T, c.(30562-30564)tCt>tTt, p.S10188F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[2010](MUC16, 19, 8959608, 8959608, NONSTOP, SNP, T, A, g.chr19:8959608T>A, -, c.43524A>T, c.(43522-43524)tgA>tgT, p.*14508C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2011](MUC16, 19, 8959609, 8959609, NONSTOP, SNP, C, A, g.chr19:8959609C>A, -, c.43523G>T, c.(43522-43524)tGa>tTa, p.*14508L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2012](MUC16, 19, 8959610, 8959610, NONSTOP, SNP, A, G, g.chr19:8959610A>G, -, c.43522T>C, c.(43522-43524)Tga>Cga, p.*14508R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2013](MUC16, 19, 9069475, 9069475, MISSENSE, SNP, C, A, g.chr19:9069475C>A, -, c.17971G>T, c.(17971-17973)Ggt>Tgt, p.G5991C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[2014](MUC16, 19, 9069850, 9069850, MISSENSE, SNP, C, A, g.chr19:9069850C>A, -, c.17596G>T, c.(17596-17598)Ggt>Tgt, p.G5866C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2015](MUC16, 19, 9072272, 9072273, MISSENSE, DNP, GG, AA, g.chr19:9072272_9072273GG>AA, -, c.15173_15174CC>TT, c.(15172-15174)aCC>aTT, p.T5058I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2016](MUC16, 19, 9071877, 9071878, MISSENSE, DNP, GG, AA, g.chr19:9071877_9071878GG>AA, -, c.15568_15569CC>TT, c.(15568-15570)CCt>TTt, p.P5190F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2017](MUC16, 19, 9062258, 9062259, MISSENSE, DNP, GG, AA, g.chr19:9062258_9062259GG>AA, -, c.25187_25188CC>TT, c.(25186-25188)tCC>tTT, p.S8396F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2018](MUC16, 19, 8997168, 8997169, MISSENSE, DNP, CT, TA, g.chr19:8997168_8997169CT>TA, -, c.41027_41028AG>TA, c.(41026-41028)aAG>aTA, p.K13676I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2019](MUC16, 19, 9071830, 9071831, MISSENSE, DNP, CC, TT, g.chr19:9071830_9071831CC>TT, -, c.15615_15616GG>AA, c.(15613-15618)acGGac>acAAac, p.D5206N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[201](MUC16, 19, 9060338, 9060338, MISSENSE, SNP, C, T, g.chr19:9060338C>T, -, c.27108G>A, c.(27106-27108)atG>atA, p.M9036I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[2020](MUC16, 19, 9046744, 9046745, MISSENSE, DNP, CC, TT, g.chr19:9046744_9046745CC>TT, -, c.34886_34887GG>AA, c.(34885-34887)gGG>gAA, p.G11629E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2021](MUC16, 19, 9056775, 9056776, MISSENSE, DNP, GG, AA, g.chr19:9056775_9056776GG>AA, -, c.30670_30671CC>TT, c.(30670-30672)CCa>TTa, p.P10224L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2022](MUC16, 19, 8996321, 8996321, SPLICE_SITE, SNP, C, A, g.chr19:8996321C>A, -, c.41251G>T, c.(41251-41253)Ggt>Tgt, p.G13751C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2023](MUC16, 19, 9065944, 9065945, MISSENSE, DNP, CC, TT, g.chr19:9065944_9065945CC>TT, -, c.21501_21502GG>AA, c.(21499-21504)aaGGac>aaAAac, p.D7168N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2024](MUC16, 19, 9046027, 9046028, MISSENSE, DNP, GG, AA, g.chr19:9046027_9046028GG>AA, -, c.35603_35604CC>TT, c.(35602-35604)tCC>tTT, p.S11868F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2025](MUC16, 19, 9063951, 9063952, MISSENSE, DNP, CC, TT, g.chr19:9063951_9063952CC>TT, -, c.23494_23495GG>AA, c.(23494-23496)GGa>AAa, p.G7832K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2026](MUC16, 19, 8996322, 8996322, SPLICE_SITE, SNP, C, A, g.chr19:8996322C>A, -, c.41250G>T, c.(41248-41250)aaG>aaT, p.K13750N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2027](MUC16, 19, 9005204, 9005205, MISSENSE, DNP, GG, AA, g.chr19:9005204_9005205GG>AA, -, c.39872_39873CC>TT, c.(39871-39873)cCC>cTT, p.P13291L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2028](MUC16, 19, 9008192, 9008193, MISSENSE, DNP, CC, TT, g.chr19:9008192_9008193CC>TT, -, c.39359_39360GG>AA, c.(39358-39360)cGG>cAA, p.R13120Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2029](MUC16, 19, 8999533, 8999534, MISSENSE, DNP, CC, TT, g.chr19:8999533_8999534CC>TT, -, c.40641_40642GG>AA, c.(40639-40644)gtGGat>gtAAat, p.D13548N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[202](MUC16, 19, 9065219, 9065219, SILENT, SNP, G, A, g.chr19:9065219G>A, -, c.22227C>T, c.(22225-22227)tcC>tcT, p.S7409S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[2030](MUC16, 19, 9086951, 9086952, MISSENSE, DNP, GG, AA, g.chr19:9086951_9086952GG>AA, -, c.4863_4864CC>TT, c.(4861-4866)ggCCca>ggTTca, p.P1622S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2031](MUC16, 19, 9067646, 9067647, MISSENSE, DNP, GG, AA, g.chr19:9067646_9067647GG>AA, -, c.19799_19800CC>TT, c.(19798-19800)aCC>aTT, p.T6600I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2032](MUC16, 19, 9018197, 9018197, MISSENSE, SNP, C, A, g.chr19:9018197C>A, -, c.37741G>T, c.(37741-37743)Ggt>Tgt, p.G12581C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2033](MUC16, 19, 9075993, 9075994, MISSENSE, DNP, GG, AA, g.chr19:9075993_9075994GG>AA, -, c.11452_11453CC>TT, c.(11452-11454)CCc>TTc, p.P3818F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2034](MUC16, 19, 9011398, 9011398, MISSENSE, SNP, C, A, g.chr19:9011398C>A, -, c.38835G>T, c.(38833-38835)tgG>tgT, p.W12945C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2035](MUC16, 19, 9075413, 9075414, MISSENSE, DNP, GG, AA, g.chr19:9075413_9075414GG>AA, -, c.12032_12033CC>TT, c.(12031-12033)tCC>tTT, p.S4011F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2036](MUC16, 19, 9091429, 9091430, MISSENSE, DNP, GG, AA, g.chr19:9091429_9091430GG>AA, -, c.385_386CC>TT, c.(385-387)CCa>TTa, p.P129L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2037](MUC16, 19, 9068060, 9068060, MISSENSE, SNP, C, A, g.chr19:9068060C>A, -, c.19386G>T, c.(19384-19386)tgG>tgT, p.W6462C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2038](MUC16, 19, 9008173, 9008173, SPLICE_SITE, SNP, C, A, g.chr19:9008173C>A, -, c.39379G>T, c.(39379-39381)Ggt>Tgt, p.G13127C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2039](MUC16, 19, 9077267, 9077267, MISSENSE, SNP, C, A, g.chr19:9077267C>A, -, c.10179G>T, c.(10177-10179)tgG>tgT, p.W3393C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[203](MUC16, 19, 9065230, 9065230, MISSENSE, SNP, G, A, g.chr19:9065230G>A, -, c.22216C>T, c.(22216-22218)Cct>Tct, p.P7406S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2040](MUC16, 19, 9070016, 9070017, MISSENSE, DNP, AG, GT, g.chr19:9070016_9070017AG>GT, -, c.17429_17430CT>AC, c.(17428-17430)aCT>aAC, p.T5810N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2041](MUC16, 19, 9011322, 9011322, SPLICE_SITE, SNP, C, A, g.chr19:9011322C>A, -, c.38911G>T, c.(38911-38913)Ggt>Tgt, p.G12971C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2042](MUC16, 19, 9048762, 9048762, MISSENSE, SNP, C, A, g.chr19:9048762C>A, -, c.32869G>T, c.(32869-32871)Ggt>Tgt, p.G10957C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2043](MUC16, 19, 9074546, 9074547, MISSENSE, DNP, CT, TA, g.chr19:9074546_9074547CT>TA, -, c.12899_12900AG>TA, c.(12898-12900)gAG>gTA, p.E4300V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.094s |
passed |
| testCreateFuncotations[2044](MUC16, 19, 9070072, 9070073, MISSENSE, DNP, CC, TT, g.chr19:9070072_9070073CC>TT, -, c.17373_17374GG>AA, c.(17371-17376)gaGGag>gaAAag, p.E5792K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2045](MUC16, 19, 9073561, 9073562, MISSENSE, DNP, CC, TT, g.chr19:9073561_9073562CC>TT, -, c.13884_13885GG>AA, c.(13882-13887)ggGGct>ggAAct, p.A4629T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2046](MUC16, 19, 9076249, 9076250, SILENT, DNP, GA, AT, g.chr19:9076249_9076250GA>AT, -, c.11196_11197TC>AT, c.(11194-11199)tcTCtg>tcATtg, p.S3732S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2047](MUC16, 19, 9070072, 9070073, MISSENSE, DNP, CC, TT, g.chr19:9070072_9070073CC>TT, -, c.17373_17374GG>AA, c.(17371-17376)gaGGag>gaAAag, p.E5792K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2048](MUC16, 19, 9073561, 9073562, MISSENSE, DNP, CC, TT, g.chr19:9073561_9073562CC>TT, -, c.13884_13885GG>AA, c.(13882-13887)ggGGct>ggAAct, p.A4629T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2049](MUC16, 19, 9059696, 9059697, MISSENSE, DNP, GG, AA, g.chr19:9059696_9059697GG>AA, -, c.27749_27750CC>TT, c.(27748-27750)gCC>gTT, p.A9250V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[204](MUC16, 19, 9067595, 9067595, SILENT, SNP, G, T, g.chr19:9067595G>T, -, c.19851C>A, c.(19849-19851)ccC>ccA, p.P6617P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[2050](MUC16, 19, 9059503, 9059503, MISSENSE, SNP, C, A, g.chr19:9059503C>A, -, c.27943G>T, c.(27943-27945)Ggt>Tgt, p.G9315C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2051](MUC16, 19, 9009652, 9009653, MISSENSE, DNP, CC, AT, g.chr19:9009652_9009653CC>AT, -, c.39073_39074GG>AT, c.(39073-39075)GGg>ATg, p.G13025M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2052](MUC16, 19, 9002624, 9002624, MISSENSE, SNP, G, A, g.chr19:9002624G>A, -, c.40192C>T, c.(40192-40194)Cgt>Tgt, p.R13398C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2053](MUC16, 19, 9064314, 9064315, MISSENSE, DNP, GG, AA, g.chr19:9064314_9064315GG>AA, -, c.23131_23132CC>TT, c.(23131-23133)CCc>TTc, p.P7711F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2054](MUC16, 19, 9049481, 9049482, MISSENSE, DNP, CC, AA, g.chr19:9049481_9049482CC>AA, -, c.32149_32150GG>TT, c.(32149-32151)GGg>TTg, p.G10717L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[2055](MUC16, 19, 9088055, 9088056, NONSENSE, DNP, CG, AT, g.chr19:9088055_9088056CG>AT, -, c.3759_3760CG>AT, c.(3757-3762)ctCGga>ctATga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2056](MUC16, 19, 9091890, 9091890, DE_NOVO_START_OUT_FRAME, INS, T, ATTCG, g.chr19:9091890_9091891insATTCG, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2057](MUC16, 19, 9091890, 9091890, DE_NOVO_START_OUT_FRAME, INS, T, CGCAT, g.chr19:9091890_9091891insCGCA, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2058](MUC16, 19, 9091890, 9091890, DE_NOVO_START_IN_FRAME, INS, T, GCATC, g.chr19:9091890_9091891insGCATC, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2059](MUC16, 19, 8966646, 8966648, SPLICE_SITE, DEL, TTA, T, g.chr19:8966647_8966648delTA, -, c.e81-4TAA>A, c.e81+5, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[205](MUC16, 19, 9067930, 9067930, MISSENSE, SNP, C, T, g.chr19:9067930C>T, -, c.19516G>A, c.(19516-19518)Gaa>Aaa, p.E6506K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2060](MUC16, 19, 8966818, 8966820, INTRON, DEL, TGG, T, g.chr19:8966819_8966820delGG, -, c.e81+2CCA>A, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2061](MUC16, 19, 8966813, 8966815, SPLICE_SITE, DEL, AGA, A, g.chr19:8966814_8966815delGA, -, c.43138_43139delTC, c.(43138-43140)tctfs, p.S14380fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2062](MUC16, 19, 8966651, 8966653, FRAME_SHIFT_DEL, DEL, ATC, A, g.chr19:8966652_8966653delTC, -, c.43300_43301delGA, c.(43300-43302)gatfs, p.D14434fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[2063](MUC16, 19, 8966647, 8966647, INTRON, INS, T, TAG, g.chr19:8966647_8966648insAG, -, c.e81-3A>CTA, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2064](MUC16, 19, 8966818, 8966818, INTRON, INS, T, TAG, g.chr19:8966818_8966819insAG, -, c.e81+2A>CTA, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2065](MUC16, 19, 8966814, 8966814, FRAME_SHIFT_INS, INS, G, GTC, g.chr19:8966814_8966815insTC, -, c.43138_43139insGA, c.(43138-43140)tctfs, p.S14380fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2066](MUC16, 19, 8966651, 8966651, FRAME_SHIFT_INS, INS, A, ATG, g.chr19:8966651_8966652insTG, -, c.43301_43302insCA, c.(43300-43302)gatfs, p.G14435fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2067](MUC16, 19, 8966648, 8966648, SPLICE_SITE, INS, A, AC, g.chr19:8966648_8966649insC, -, c.e81-2T>GT, c.e81+2, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[2068](MUC16, 19, 8966817, 8966817, SPLICE_SITE, INS, C, CT, g.chr19:8966817_8966818insT, -, c.e81+1G>AG, c.e81-1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2069](MUC16, 19, 8966815, 8966815, SPLICE_SITE, INS, A, AT, g.chr19:8966815_8966816insT, -, c.43137_43138insA, c.(43138-43140)tctfs, p.S14380fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[206](MUC16, 19, 9083352, 9083352, MISSENSE, SNP, C, T, g.chr19:9083352C>T, -, c.8463G>A, c.(8461-8463)atG>atA, p.M2821I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[2070](MUC16, 19, 8966650, 8966650, SPLICE_SITE, INS, C, CG, g.chr19:8966650_8966651insG, -, c.43302_43303insC, c.(43303-43305)gggfs, p.G14435fs, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[2071](MUC16, 19, 8966813, 8966813, IN_FRAME_INS, INS, A, AGTGAGA, g.chr19:8966813_8966814insGTGAGA, -, c.43139_43140insTCTCAC, c.(43138-43140)tct>tcTCTCACt, p.14380_14381insLT, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2072](PIK3CA, 3, 178916619, 178916619, SILENT, SNP, T, A, g.chr3:178916619T>A, +, c.6T>A, c.(4-6)ccT>ccA, p.P2P, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2073](PIK3CA, 3, 178916620, 178916620, MISSENSE, SNP, C, T, g.chr3:178916620C>T, +, c.7C>T, c.(7-9)Cca>Tca, p.P3S, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2074](PIK3CA, 3, 178916617, 178916617, MISSENSE, SNP, C, T, g.chr3:178916617C>T, +, c.4C>T, c.(4-6)Cct>Tct, p.P2S, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2075](PIK3CA, 3, 178919220, 178919220, SILENT, SNP, C, T, g.chr3:178919220C>T, +, c.705C>T, c.(703-705)tcC>tcT, p.S235S, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2076](PIK3CA, 3, 178921433, 178921433, SILENT, SNP, A, T, g.chr3:178921433A>T, +, c.915A>T, c.(913-915)ccA>ccT, p.P305P, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2077](PIK3CA, 3, 178922366, 178922366, MISSENSE, SNP, T, A, g.chr3:178922366T>A, +, c.1135T>A, c.(1135-1137)Tcc>Acc, p.S379T, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2078](PIK3CA, 3, 178928317, 178928317, SILENT, SNP, C, T, g.chr3:178928317C>T, +, c.1503C>T, c.(1501-1503)tcC>tcT, p.S501S, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2079](PIK3CA, 3, 178936091, 178936091, MISSENSE, SNP, G, A, g.chr3:178936091G>A, +, c.1633G>A, c.(1633-1635)Gag>Aag, p.E545K, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[207](MUC16, 19, 9049655, 9049655, MISSENSE, SNP, G, A, g.chr19:9049655G>A, -, c.31976C>T, c.(31975-31977)tCg>tTg, p.S10659L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[2080](PIK3CA, 3, 178937063, 178937063, NONSENSE, SNP, C, T, g.chr3:178937063C>T, +, c.1744C>T, c.(1744-1746)Cag>Tag, p.Q582*, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2081](PIK3CA, 3, 178941890, 178941890, MISSENSE, SNP, G, A, g.chr3:178941890G>A, +, c.2209G>A, c.(2209-2211)Gag>Aag, p.E737K, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2082](PIK3CA, 3, 178942511, 178942511, MISSENSE, SNP, C, T, g.chr3:178942511C>T, +, c.2318C>T, c.(2317-2319)tCc>tTc, p.S773F, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2083](PIK3CA, 3, 178942523, 178942523, MISSENSE, SNP, G, A, g.chr3:178942523G>A, +, c.2330G>A, c.(2329-2331)aGg>aAg, p.R777K, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2084](PIK3CA, 3, 178943785, 178943785, MISSENSE, SNP, C, T, g.chr3:178943785C>T, +, c.2452C>T, c.(2452-2454)Cgt>Tgt, p.R818C, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2085](PIK3CA, 3, 178947158, 178947158, MISSENSE, SNP, G, A, g.chr3:178947158G>A, +, c.2594G>A, c.(2593-2595)gGc>gAc, p.G865D, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2086](PIK3CA, 3, 178952085, 178952085, MISSENSE, SNP, A, T, g.chr3:178952085A>T, +, c.3140A>T, c.(3139-3141)cAt>cTt, p.H1047L, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2087](PIK3CA, 3, 178916619, 178916619, IN_FRAME_INS, INS, T, TCGA, g.chr3:178916619_178916620insCGA, +, c.6_7insCGA, c.(7-9)cca>CGAcca, p.2_3insR, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2088](PIK3CA, 3, 178948159, 178948159, IN_FRAME_INS, INS, T, TGAG, g.chr3:178948159_178948160insGAG, +, c.2931_2932insGAG, c.(2932-2934)gag>GAGgag, p.977_978insE, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2089](PIK3CA, 3, 178948165, 178948165, SPLICE_SITE, INS, G, GT, g.chr3:178948165_178948166insT, +, c.e20+1G>GT, c.e20+1, null, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[208](MUC16, 19, 9058623, 9058623, MISSENSE, SNP, G, A, g.chr19:9058623G>A, -, c.28823C>T, c.(28822-28824)cCc>cTc, p.P9608L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[2090](PIK3CA, 3, 178948166, 178948166, INTRON, INS, T, TT, g.chr3:178948166_178948167insT, +, c.e20+2T>TT, null, null, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2091](PIK3CA, 3, 178916619, 178916619, FRAME_SHIFT_INS, INS, T, TCG, g.chr3:178916619_178916620insCG, +, c.6_7insCG, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2092](PIK3CA, 3, 178948159, 178948159, FRAME_SHIFT_INS, INS, T, TGA, g.chr3:178948159_178948160insGA, +, c.2931_2932insGA, c.(2932-2934)gagfs, p.F980fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2093](PIK3CA, 3, 178948163, 178948163, SPLICE_SITE, INS, A, AT, g.chr3:178948163_178948164insT, +, c.2935_2936insT, c.(2935-2937)aggfs, p.R979fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2094](PIK3CA, 3, 178948154, 178948154, FRAME_SHIFT_INS, INS, G, GGAATT, g.chr3:178948154_178948155insGAATT, +, c.2926_2927insGAATT, c.(2926-2928)gaafs, p.E976fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2095](PIK3CA, 3, 178948155, 178948155, FRAME_SHIFT_INS, INS, A, AGAATT, g.chr3:178948155_178948156insGAATT, +, c.2927_2928insGAATT, c.(2926-2928)gaafs, p.F977fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2096](PIK3CA, 3, 178948156, 178948156, FRAME_SHIFT_INS, INS, A, AGAATT, g.chr3:178948156_178948157insGAATT, +, c.2928_2929insGAATT, c.(2929-2931)tttfs, p.F977fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2097](PIK3CA, 3, 178948157, 178948157, FRAME_SHIFT_INS, INS, T, TGAATT, g.chr3:178948157_178948158insGAATT, +, c.2929_2930insGAATT, c.(2929-2931)tttfs, p.F977fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2098](PIK3CA, 3, 178948158, 178948158, FRAME_SHIFT_INS, INS, T, TGAATT, g.chr3:178948158_178948159insGAATT, +, c.2930_2931insGAATT, c.(2929-2931)tttfs, p.F977fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2099](PIK3CA, 3, 178948163, 178948163, SPLICE_SITE, INS, A, ATGA, g.chr3:178948163_178948164insTGA, +, c.2935_2936insTGA, c.(2935-2937)agg>aTGAgg, p.978_979insM, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[209](MUC16, 19, 9066659, 9066659, SILENT, SNP, G, T, g.chr19:9066659G>T, -, c.20787C>A, c.(20785-20787)tcC>tcA, p.S6929S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[20](MUC16, 19, 9076673, 9076673, SILENT, SNP, G, T, g.chr19:9076673G>T, -, c.10773C>A, c.(10771-10773)tcC>tcA, p.S3591S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[2100](PIK3CA, 3, 178916937, 178916940, IN_FRAME_DEL, DEL, TGAA, T, g.chr3:178916938_178916940delGAA, +, c.325_327delGAA, c.(325-327)gaadel, p.E109del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2101](PIK3CA, 3, 178948159, 178948162, IN_FRAME_DEL, DEL, TGAG, T, g.chr3:178948160_178948162delGAG, +, c.2932_2934delGAG, c.(2932-2934)gagdel, p.E978del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2102](PIK3CA, 3, 178948159, 178948161, FRAME_SHIFT_DEL, DEL, TGA, T, g.chr3:178948160_178948161delGA, +, c.2932_2933delGA, c.(2932-2934)gagfs, p.R979fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2103](PIK3CA, 3, 178948153, 178948158, FRAME_SHIFT_DEL, DEL, AGAATT, A, g.chr3:178948154_178948158delGAATT, +, c.2926_2930delGAATT, c.(2926-2931)gaatttfs, p.E976fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2104](PIK3CA, 3, 178948153, 178948157, FRAME_SHIFT_DEL, DEL, AGAAT, A, g.chr3:178948154_178948157delGAAT, +, c.2926_2929delGAAT, c.(2926-2931)gaatttfs, p.E976fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2105](PIK3CA, 3, 178948159, 178948164, SPLICE_SITE, DEL, TGAGAG, T, g.chr3:178948160_178948164delGAGAG, +, c.2932_2936delGAGAG, c.(2932-2937)gagaggfs, p.E978fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2106](PIK3CA, 3, 178948165, 178948168, SPLICE_SITE, DEL, GTGA, G, g.chr3:178948166_178948168delTGA, +, c.e20+1GTGA>G, c.e20+2, null, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2107](PIK3CA, 3, 178916621, 178916621, IN_FRAME_INS, INS, C, CTAT, g.chr3:178916621_178916622insTAT, +, c.8_9insTAT, c.(7-9)cca>ccTATa, p.3_4insI, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2108](PIK3CA, 3, 178916622, 178916622, IN_FRAME_INS, INS, A, ATAT, g.chr3:178916622_178916623insTAT, +, c.9_10insTAT, c.(10-12)cga>TATcga, p.3_4insY, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2109](PIK3CA, 3, 178916619, 178916619, IN_FRAME_INS, INS, T, TTAT, g.chr3:178916619_178916620insTAT, +, c.6_7insTAT, c.(7-9)cca>TATcca, p.2_3insY, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[210](MUC16, 19, 9083556, 9083556, SILENT, SNP, C, A, g.chr19:9083556C>A, -, c.8259G>T, c.(8257-8259)gcG>gcT, p.A2753A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[2110](PIK3CA, 3, 178916620, 178916620, IN_FRAME_INS, INS, C, CTAT, g.chr3:178916620_178916621insTAT, +, c.7_8insTAT, c.(7-9)cca>cTATca, p.P3LS, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2111](PIK3CA, 3, 178916622, 178916622, IN_FRAME_INS, INS, A, ACTTGAAGAA, g.chr3:178916622_178916623insCTTGAAGAA, +, c.9_10insCTTGAAGAA, c.(10-12)cga>CTTGAAGAAcga, p.3_4insLEE, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2112](PIK3CA, 3, 178916621, 178916621, FRAME_SHIFT_INS, INS, C, CTA, g.chr3:178916621_178916622insTA, +, c.8_9insTA, c.(7-9)ccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2113](PIK3CA, 3, 178916622, 178916622, FRAME_SHIFT_INS, INS, A, ATA, g.chr3:178916622_178916623insTA, +, c.9_10insTA, c.(10-12)cgafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2114](PIK3CA, 3, 178916619, 178916619, FRAME_SHIFT_INS, INS, T, TTA, g.chr3:178916619_178916620insTA, +, c.6_7insTA, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[2115](PIK3CA, 3, 178916620, 178916620, FRAME_SHIFT_INS, INS, C, CTA, g.chr3:178916620_178916621insTA, +, c.7_8insTA, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2116](PIK3CA, 3, 178916621, 178916621, FRAME_SHIFT_INS, INS, C, CT, g.chr3:178916621_178916622insT, +, c.8_9insT, c.(7-9)ccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2117](PIK3CA, 3, 178916622, 178916622, FRAME_SHIFT_INS, INS, A, AT, g.chr3:178916622_178916623insT, +, c.9_10insT, c.(10-12)cgafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2118](PIK3CA, 3, 178916619, 178916619, FRAME_SHIFT_INS, INS, T, TT, g.chr3:178916619_178916620insT, +, c.6_7insT, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2119](PIK3CA, 3, 178916620, 178916620, FRAME_SHIFT_INS, INS, C, CT, g.chr3:178916620_178916621insT, +, c.7_8insT, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[211](MUC16, 19, 9085314, 9085314, SILENT, SNP, C, T, g.chr19:9085314C>T, -, c.6501G>A, c.(6499-6501)ccG>ccA, p.P2167P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[2120](PIK3CA, 3, 178916621, 178916621, FRAME_SHIFT_INS, INS, C, CTATT, g.chr3:178916621_178916622insTATT, +, c.8_9insTATT, c.(7-9)ccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2121](PIK3CA, 3, 178916622, 178916622, FRAME_SHIFT_INS, INS, A, ATATT, g.chr3:178916622_178916623insTATT, +, c.9_10insTATT, c.(10-12)cgafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2122](PIK3CA, 3, 178916619, 178916619, FRAME_SHIFT_INS, INS, T, TTATT, g.chr3:178916619_178916620insTATT, +, c.6_7insTATT, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2123](PIK3CA, 3, 178916620, 178916620, FRAME_SHIFT_INS, INS, C, CTATT, g.chr3:178916620_178916621insTATT, +, c.7_8insTATT, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2124](PIK3CA, 3, 178916618, 178916621, IN_FRAME_DEL, DEL, CTCC, C, g.chr3:178916619_178916621delTCC, +, c.6_8delTCC, c.(4-9)cctcca>cca, p.P3del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2125](PIK3CA, 3, 178916619, 178916622, IN_FRAME_DEL, DEL, TCCA, T, g.chr3:178916620_178916622delCCA, +, c.7_9delCCA, c.(7-9)ccadel, p.P3del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2126](PIK3CA, 3, 178916620, 178916623, IN_FRAME_DEL, DEL, CCAC, C, g.chr3:178916621_178916623delCAC, +, c.8_10delCAC, c.(7-12)ccacga>cga, p.P3del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2127](PIK3CA, 3, 178916621, 178916624, IN_FRAME_DEL, DEL, CACG, C, g.chr3:178916622_178916624delACG, +, c.9_11delACG, c.(7-12)ccacga>cca, p.R4del, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2128](PIK3CA, 3, 178916618, 178916620, FRAME_SHIFT_DEL, DEL, CTC, C, g.chr3:178916619_178916620delTC, +, c.6_7delTC, c.(4-9)cctccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2129](PIK3CA, 3, 178916619, 178916621, FRAME_SHIFT_DEL, DEL, TCC, T, g.chr3:178916620_178916621delCC, +, c.7_8delCC, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[212](MUC16, 19, 9070546, 9070546, MISSENSE, SNP, G, T, g.chr19:9070546G>T, -, c.16900C>A, c.(16900-16902)Ctg>Atg, p.L5634M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2130](PIK3CA, 3, 178916620, 178916622, FRAME_SHIFT_DEL, DEL, CCA, C, g.chr3:178916621_178916622delCA, +, c.8_9delCA, c.(7-9)ccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2131](PIK3CA, 3, 178916621, 178916623, FRAME_SHIFT_DEL, DEL, CAC, C, g.chr3:178916622_178916623delAC, +, c.9_10delAC, c.(7-12)ccacgafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2132](PIK3CA, 3, 178916618, 178916619, FRAME_SHIFT_DEL, DEL, CT, C, g.chr3:178916619delT, +, c.6delT, c.(4-6)cctfs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[2133](PIK3CA, 3, 178916619, 178916620, FRAME_SHIFT_DEL, DEL, TC, T, g.chr3:178916620delC, +, c.7delC, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2134](PIK3CA, 3, 178916620, 178916621, FRAME_SHIFT_DEL, DEL, CC, C, g.chr3:178916621delC, +, c.8delC, c.(7-9)ccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2135](PIK3CA, 3, 178916621, 178916622, FRAME_SHIFT_DEL, DEL, CA, C, g.chr3:178916622delA, +, c.9delA, c.(7-9)ccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2136](PIK3CA, 3, 178916618, 178916622, FRAME_SHIFT_DEL, DEL, CTCCA, C, g.chr3:178916619_178916622delTCCA, +, c.6_9delTCCA, c.(4-9)cctccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2137](PIK3CA, 3, 178916619, 178916623, FRAME_SHIFT_DEL, DEL, TCCAC, T, g.chr3:178916620_178916623delCCAC, +, c.7_10delCCAC, c.(7-12)ccacgafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2138](PIK3CA, 3, 178916620, 178916624, FRAME_SHIFT_DEL, DEL, CCACG, C, g.chr3:178916621_178916624delCACG, +, c.8_11delCACG, c.(7-12)ccacgafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2139](PIK3CA, 3, 178916621, 178916625, FRAME_SHIFT_DEL, DEL, CACGA, C, g.chr3:178916622_178916625delACGA, +, c.9_12delACGA, c.(7-12)ccacgafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[213](MUC16, 19, 9013898, 9013898, MISSENSE, SNP, G, A, g.chr19:9013898G>A, -, c.38492C>T, c.(38491-38493)tCc>tTc, p.S12831F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[2140](PIK3CA, 3, 178916618, 178916625, FRAME_SHIFT_DEL, DEL, CTCCACGA, C, g.chr3:178916619_178916625delTCCACGA, +, c.6_12delTCCACGA, c.(4-12)cctccacgafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[2141](PIK3CA, 3, 178916619, 178916626, FRAME_SHIFT_DEL, DEL, TCCACGAC, T, g.chr3:178916620_178916626delCCACGAC, +, c.7_13delCCACGAC, c.(7-15)ccacgaccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[2142](PIK3CA, 3, 178916620, 178916627, FRAME_SHIFT_DEL, DEL, CCACGACC, C, g.chr3:178916621_178916627delCACGACC, +, c.8_14delCACGACC, c.(7-15)ccacgaccafs, p.P3fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[2143](PIK3CA, 3, 178916621, 178916628, FRAME_SHIFT_DEL, DEL, CACGACCA, C, g.chr3:178916622_178916628delACGACCA, +, c.9_15delACGACCA, c.(7-15)ccacgaccafs, p.R4fs, /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@7ddf7e77, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[2144](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, NA, C, <DEL>, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.012s |
passed |
| testCreateFuncotations[2145](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, NA, C, <DUP>, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.003s |
passed |
| testCreateFuncotations[2146](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, NA, N, <DEL>, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[2147](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, NA, N, <DUP>, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[2148](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, SNP, N, A, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.003s |
passed |
| testCreateFuncotations[2149](NPB, 17, 81902450, 81902450, COULD_NOT_DETERMINE, SNP, C, N, null, +, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[214](MUC16, 19, 9063802, 9063802, MISSENSE, SNP, C, T, g.chr19:9063802C>T, -, c.23644G>A, c.(23644-23646)Gac>Aac, p.D7882N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[2150](null, 17, 81971500, 81971500, IGR, NA, N, <DUP>, null, null, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[2151](null, 17, 81971500, 81971500, IGR, SNP, N, A, g.chr17:81971500N>A, null, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[2152](null, 17, 81971500, 81971500, IGR, SNP, C, N, g.chr17:81971500C>N, null, null, null, null, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, htsjdk.tribble.TribbleIndexedFeatureReader@25727f74, org.broadinstitute.hellbender.engine.ReferenceFileSource@6999dca2, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg38/gencode.v28.regressionTestVariantSet.gtf) |
0.002s |
passed |
| testCreateFuncotations[2153](TP53, 17, 7578492, 7578492, NONSENSE, SNP, C, T, g.chr17:7578492C>T, -, c.438G>A, c.(436-438)tgG>tgA, p.W146*, /tmp/funcotatorTmpFolder3848837997820342956/GRCh37.p13.chr17.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@7fef485d, org.broadinstitute.hellbender.engine.ReferenceFileSource@53a4637c, /gatkCloneMountPoint/src/test/resources/large/funcotator/small_ds_order_bugfix_7051_tests/gencode_tp53/hg19/gencode.v34lift37.pc_transcripts.TP53.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/small_ds_order_bugfix_7051_tests/gencode_tp53/hg19/gencode.v34lift37.pc_transcripts.TP53.fa) |
0.006s |
passed |
| testCreateFuncotations[215](MUC16, 19, 9003650, 9003650, SILENT, SNP, G, T, g.chr19:9003650G>T, -, c.39990C>A, c.(39988-39990)acC>acA, p.T13330T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[216](MUC16, 19, 9047229, 9047229, MISSENSE, SNP, C, A, g.chr19:9047229C>A, -, c.34402G>T, c.(34402-34404)Ggg>Tgg, p.G11468W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[217](MUC16, 19, 9050128, 9050128, SILENT, SNP, G, T, g.chr19:9050128G>T, -, c.31503C>A, c.(31501-31503)ccC>ccA, p.P10501P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[218](MUC16, 19, 9056225, 9056225, SILENT, SNP, C, A, g.chr19:9056225C>A, -, c.31221G>T, c.(31219-31221)ctG>ctT, p.L10407L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[219](MUC16, 19, 9057011, 9057011, SILENT, SNP, G, A, g.chr19:9057011G>A, -, c.30435C>T, c.(30433-30435)tcC>tcT, p.S10145S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[21](MUC16, 19, 9076914, 9076914, MISSENSE, SNP, G, T, g.chr19:9076914G>T, -, c.10532C>A, c.(10531-10533)cCt>cAt, p.P3511H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[220](MUC16, 19, 9071156, 9071156, SILENT, SNP, G, T, g.chr19:9071156G>T, -, c.16290C>A, c.(16288-16290)tcC>tcA, p.S5430S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[221](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[222](MUC16, 19, 9074565, 9074565, MISSENSE, SNP, G, A, g.chr19:9074565G>A, -, c.12881C>T, c.(12880-12882)tCc>tTc, p.S4294F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[223](MUC16, 19, 9074987, 9074987, SILENT, SNP, C, A, g.chr19:9074987C>A, -, c.12459G>T, c.(12457-12459)gtG>gtT, p.V4153V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[224](MUC16, 19, 9077657, 9077657, SILENT, SNP, G, T, g.chr19:9077657G>T, -, c.9789C>A, c.(9787-9789)ccC>ccA, p.P3263P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[225](MUC16, 19, 9088011, 9088011, SILENT, SNP, G, T, g.chr19:9088011G>T, -, c.3804C>A, c.(3802-3804)acC>acA, p.T1268T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[226](MUC16, 19, 9088100, 9088100, MISSENSE, SNP, G, T, g.chr19:9088100G>T, -, c.3715C>A, c.(3715-3717)Ctc>Atc, p.L1239I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[227](MUC16, 19, 9027568, 9027568, SILENT, SNP, G, A, g.chr19:9027568G>A, -, c.36576C>T, c.(36574-36576)acC>acT, p.T12192T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[228](MUC16, 19, 9045944, 9045944, MISSENSE, SNP, G, A, g.chr19:9045944G>A, -, c.35687C>T, c.(35686-35688)tCc>tTc, p.S11896F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[229](MUC16, 19, 9046062, 9046062, MISSENSE, SNP, C, T, g.chr19:9046062C>T, -, c.35569G>A, c.(35569-35571)Gaa>Aaa, p.E11857K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[22](MUC16, 19, 9083281, 9083281, MISSENSE, SNP, G, A, g.chr19:9083281G>A, -, c.8534C>T, c.(8533-8535)cCc>cTc, p.P2845L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[230](MUC16, 19, 9046254, 9046254, MISSENSE, SNP, G, A, g.chr19:9046254G>A, -, c.35377C>T, c.(35377-35379)Cct>Tct, p.P11793S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[231](MUC16, 19, 9048845, 9048845, MISSENSE, SNP, C, T, g.chr19:9048845C>T, -, c.32786G>A, c.(32785-32787)gGg>gAg, p.G10929E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[232](MUC16, 19, 9056878, 9056878, MISSENSE, SNP, G, A, g.chr19:9056878G>A, -, c.30568C>T, c.(30568-30570)Cct>Tct, p.P10190S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[233](MUC16, 19, 9059483, 9059483, SILENT, SNP, G, A, g.chr19:9059483G>A, -, c.27963C>T, c.(27961-27963)tcC>tcT, p.S9321S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[234](MUC16, 19, 9063850, 9063850, MISSENSE, SNP, C, T, g.chr19:9063850C>T, -, c.23596G>A, c.(23596-23598)Gaa>Aaa, p.E7866K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[235](MUC16, 19, 9066695, 9066695, MISSENSE, SNP, C, A, g.chr19:9066695C>A, -, c.20751G>T, c.(20749-20751)atG>atT, p.M6917I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[236](MUC16, 19, 9067164, 9067164, MISSENSE, SNP, C, A, g.chr19:9067164C>A, -, c.20282G>T, c.(20281-20283)aGg>aTg, p.R6761M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[237](MUC16, 19, 9067233, 9067233, MISSENSE, SNP, C, A, g.chr19:9067233C>A, -, c.20213G>T, c.(20212-20214)cGa>cTa, p.R6738L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[238](MUC16, 19, 9067474, 9067474, MISSENSE, SNP, C, A, g.chr19:9067474C>A, -, c.19972G>T, c.(19972-19974)Ggg>Tgg, p.G6658W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[239](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[23](MUC16, 19, 9087200, 9087200, MISSENSE, SNP, G, T, g.chr19:9087200G>T, -, c.4615C>A, c.(4615-4617)Cca>Aca, p.P1539T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[240](MUC16, 19, 9072702, 9072702, MISSENSE, SNP, A, G, g.chr19:9072702A>G, -, c.14744T>C, c.(14743-14745)gTt>gCt, p.V4915A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[241](MUC16, 19, 9073819, 9073819, MISSENSE, SNP, C, A, g.chr19:9073819C>A, -, c.13627G>T, c.(13627-13629)Ggg>Tgg, p.G4543W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[242](MUC16, 19, 9077469, 9077469, MISSENSE, SNP, C, T, g.chr19:9077469C>T, -, c.9977G>A, c.(9976-9978)gGg>gAg, p.G3326E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[243](MUC16, 19, 9083027, 9083027, MISSENSE, SNP, A, T, g.chr19:9083027A>T, -, c.8788T>A, c.(8788-8790)Tcc>Acc, p.S2930T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[244](MUC16, 19, 9086190, 9086190, SILENT, SNP, C, T, g.chr19:9086190C>T, -, c.5625G>A, c.(5623-5625)ttG>ttA, p.L1875L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[245](MUC16, 19, 9087026, 9087026, MISSENSE, SNP, C, A, g.chr19:9087026C>A, -, c.4789G>T, c.(4789-4791)Ggg>Tgg, p.G1597W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[246](MUC16, 19, 9091647, 9091647, SILENT, SNP, G, T, g.chr19:9091647G>T, -, c.168C>A, c.(166-168)ccC>ccA, p.P56P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[247](MUC16, 19, 9038403, 9038403, MISSENSE, SNP, C, A, g.chr19:9038403C>A, -, c.36116G>T, c.(36115-36117)cGg>cTg, p.R12039L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[248](MUC16, 19, 9046048, 9046048, MISSENSE, SNP, C, T, g.chr19:9046048C>T, -, c.35583G>A, c.(35581-35583)atG>atA, p.M11861I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[249](MUC16, 19, 9069397, 9069397, MISSENSE, SNP, C, A, g.chr19:9069397C>A, -, c.18049G>T, c.(18049-18051)Ggg>Tgg, p.G6017W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[24](MUC16, 19, 9088334, 9088334, MISSENSE, SNP, G, A, g.chr19:9088334G>A, -, c.3481C>T, c.(3481-3483)Cct>Tct, p.P1161S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[250](MUC16, 19, 9089545, 9089545, MISSENSE, SNP, G, A, g.chr19:9089545G>A, -, c.2270C>T, c.(2269-2271)cCt>cTt, p.P757L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[251](MUC16, 19, 9056509, 9056509, MISSENSE, SNP, C, A, g.chr19:9056509C>A, -, c.30937G>T, c.(30937-30939)Ggg>Tgg, p.G10313W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[252](MUC16, 19, 9068151, 9068151, MISSENSE, SNP, G, A, g.chr19:9068151G>A, -, c.19295C>T, c.(19294-19296)tCt>tTt, p.S6432F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[253](MUC16, 19, 9072414, 9072414, MISSENSE, SNP, G, A, g.chr19:9072414G>A, -, c.15032C>T, c.(15031-15033)tCa>tTa, p.S5011L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[254](MUC16, 19, 8997482, 8997482, MISSENSE, SNP, C, A, g.chr19:8997482C>A, -, c.40940G>T, c.(40939-40941)cGg>cTg, p.R13647L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[255](MUC16, 19, 9057124, 9057124, NONSENSE, SNP, C, A, g.chr19:9057124C>A, -, c.30322G>T, c.(30322-30324)Gga>Tga, p.G10108*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[256](MUC16, 19, 9066283, 9066283, MISSENSE, SNP, G, T, g.chr19:9066283G>T, -, c.21163C>A, c.(21163-21165)Cag>Aag, p.Q7055K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[257](MUC16, 19, 9068061, 9068061, MISSENSE, SNP, C, A, g.chr19:9068061C>A, -, c.19385G>T, c.(19384-19386)tGg>tTg, p.W6462L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[258](MUC16, 19, 9068183, 9068183, SILENT, SNP, C, A, g.chr19:9068183C>A, -, c.19263G>T, c.(19261-19263)ccG>ccT, p.P6421P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[259](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[25](MUC16, 19, 9018458, 9018458, SILENT, SNP, A, T, g.chr19:9018458A>T, -, c.37716T>A, c.(37714-37716)acT>acA, p.T12572T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[260](MUC16, 19, 9072770, 9072770, SILENT, SNP, G, T, g.chr19:9072770G>T, -, c.14676C>A, c.(14674-14676)tcC>tcA, p.S4892S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[261](MUC16, 19, 9088114, 9088114, MISSENSE, SNP, C, A, g.chr19:9088114C>A, -, c.3701G>T, c.(3700-3702)gGg>gTg, p.G1234V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[262](MUC16, 19, 9088804, 9088804, MISSENSE, SNP, G, T, g.chr19:9088804G>T, -, c.3011C>A, c.(3010-3012)cCa>cAa, p.P1004Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[263](MUC16, 19, 9080450, 9080450, SPLICE_SITE, SNP, C, T, g.chr19:9080450C>T, -, c.e2-1G>A, c.e2+1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[264](MUC16, 19, 9045956, 9045956, MISSENSE, SNP, G, A, g.chr19:9045956G>A, -, c.35675C>T, c.(35674-35676)aCt>aTt, p.T11892I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[265](MUC16, 19, 9047693, 9047693, MISSENSE, SNP, G, A, g.chr19:9047693G>A, -, c.33938C>T, c.(33937-33939)cCt>cTt, p.P11313L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[266](MUC16, 19, 9068223, 9068223, MISSENSE, SNP, C, T, g.chr19:9068223C>T, -, c.19223G>A, c.(19222-19224)aGa>aAa, p.R6408K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[267](MUC16, 19, 9071243, 9071243, SILENT, SNP, C, T, g.chr19:9071243C>T, -, c.16203G>A, c.(16201-16203)gaG>gaA, p.E5401E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[268](MUC16, 19, 9084930, 9084930, NONSENSE, SNP, C, T, g.chr19:9084930C>T, -, c.6885G>A, c.(6883-6885)tgG>tgA, p.W2295*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[269](MUC16, 19, 9088177, 9088177, MISSENSE, SNP, C, T, g.chr19:9088177C>T, -, c.3638G>A, c.(3637-3639)gGa>gAa, p.G1213E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[26](MUC16, 19, 9063777, 9063777, MISSENSE, SNP, C, A, g.chr19:9063777C>A, -, c.23669G>T, c.(23668-23670)tGg>tTg, p.W7890L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[270](MUC16, 19, 9091441, 9091441, MISSENSE, SNP, C, T, g.chr19:9091441C>T, -, c.374G>A, c.(373-375)gGa>gAa, p.G125E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[271](MUC16, 19, 9058283, 9058283, SILENT, SNP, C, T, g.chr19:9058283C>T, -, c.29163G>A, c.(29161-29163)gtG>gtA, p.V9721V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[272](MUC16, 19, 9072326, 9072326, SILENT, SNP, G, A, g.chr19:9072326G>A, -, c.15120C>T, c.(15118-15120)ccC>ccT, p.P5040P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[273](MUC16, 19, 9074184, 9074184, MISSENSE, SNP, G, A, g.chr19:9074184G>A, -, c.13262C>T, c.(13261-13263)cCa>cTa, p.P4421L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[274](MUC16, 19, 9082490, 9082490, MISSENSE, SNP, C, T, g.chr19:9082490C>T, -, c.9325G>A, c.(9325-9327)Gaa>Aaa, p.E3109K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[275](MUC16, 19, 9086743, 9086743, MISSENSE, SNP, C, T, g.chr19:9086743C>T, -, c.5072G>A, c.(5071-5073)aGa>aAa, p.R1691K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[276](MUC16, 19, 9058034, 9058034, SILENT, SNP, C, T, g.chr19:9058034C>T, -, c.29412G>A, c.(29410-29412)gaG>gaA, p.E9804E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[277](MUC16, 19, 9063915, 9063915, MISSENSE, SNP, G, A, g.chr19:9063915G>A, -, c.23531C>T, c.(23530-23532)tCa>tTa, p.S7844L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[278](MUC16, 19, 9057066, 9057066, MISSENSE, SNP, G, A, g.chr19:9057066G>A, -, c.30380C>T, c.(30379-30381)tCc>tTc, p.S10127F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[279](MUC16, 19, 9064403, 9064403, SILENT, SNP, C, T, g.chr19:9064403C>T, -, c.23043G>A, c.(23041-23043)gtG>gtA, p.V7681V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[27](MUC16, 19, 9071965, 9071965, NONSENSE, SNP, C, A, g.chr19:9071965C>A, -, c.15481G>T, c.(15481-15483)Gga>Tga, p.G5161*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[280](MUC16, 19, 9069660, 9069660, MISSENSE, SNP, G, A, g.chr19:9069660G>A, -, c.17786C>T, c.(17785-17787)tCc>tTc, p.S5929F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[281](MUC16, 19, 9082794, 9082794, SILENT, SNP, G, A, g.chr19:9082794G>A, -, c.9021C>T, c.(9019-9021)acC>acT, p.T3007T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[282](MUC16, 19, 9084492, 9084492, SILENT, SNP, G, A, g.chr19:9084492G>A, -, c.7323C>T, c.(7321-7323)tcC>tcT, p.S2441S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[283](MUC16, 19, 9085237, 9085237, MISSENSE, SNP, G, A, g.chr19:9085237G>A, -, c.6578C>T, c.(6577-6579)tCc>tTc, p.S2193F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[284](MUC16, 19, 9086687, 9086687, MISSENSE, SNP, C, T, g.chr19:9086687C>T, -, c.5128G>A, c.(5128-5130)Gaa>Aaa, p.E1710K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[285](MUC16, 19, 9089550, 9089550, SILENT, SNP, C, T, g.chr19:9089550C>T, -, c.2265G>A, c.(2263-2265)ggG>ggA, p.G755G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[286](MUC16, 19, 9074964, 9074964, MISSENSE, SNP, G, A, g.chr19:9074964G>A, -, c.12482C>T, c.(12481-12483)tCc>tTc, p.S4161F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[287](MUC16, 19, 9048429, 9048429, MISSENSE, SNP, C, T, g.chr19:9048429C>T, -, c.33202G>A, c.(33202-33204)Gaa>Aaa, p.E11068K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[288](MUC16, 19, 9058282, 9058282, MISSENSE, SNP, C, T, g.chr19:9058282C>T, -, c.29164G>A, c.(29164-29166)Gaa>Aaa, p.E9722K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[289](MUC16, 19, 9059611, 9059611, NONSENSE, SNP, G, A, g.chr19:9059611G>A, -, c.27835C>T, c.(27835-27837)Caa>Taa, p.Q9279*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[28](MUC16, 19, 9073131, 9073131, MISSENSE, SNP, G, A, g.chr19:9073131G>A, -, c.14315C>T, c.(14314-14316)cCt>cTt, p.P4772L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[290](MUC16, 19, 9060263, 9060263, SILENT, SNP, C, T, g.chr19:9060263C>T, -, c.27183G>A, c.(27181-27183)gtG>gtA, p.V9061V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[291](MUC16, 19, 9064344, 9064344, MISSENSE, SNP, G, A, g.chr19:9064344G>A, -, c.23102C>T, c.(23101-23103)cCt>cTt, p.P7701L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[292](MUC16, 19, 9064917, 9064917, MISSENSE, SNP, G, A, g.chr19:9064917G>A, -, c.22529C>T, c.(22528-22530)aCc>aTc, p.T7510I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[293](MUC16, 19, 9067233, 9067233, MISSENSE, SNP, C, T, g.chr19:9067233C>T, -, c.20213G>A, c.(20212-20214)cGa>cAa, p.R6738Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[294](MUC16, 19, 9068743, 9068743, MISSENSE, SNP, G, A, g.chr19:9068743G>A, -, c.18703C>T, c.(18703-18705)Cct>Tct, p.P6235S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[295](MUC16, 19, 9069352, 9069352, MISSENSE, SNP, G, A, g.chr19:9069352G>A, -, c.18094C>T, c.(18094-18096)Cac>Tac, p.H6032Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[296](MUC16, 19, 9087718, 9087718, MISSENSE, SNP, C, T, g.chr19:9087718C>T, -, c.4097G>A, c.(4096-4098)gGa>gAa, p.G1366E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[297](MUC16, 19, 9061180, 9061180, MISSENSE, SNP, G, A, g.chr19:9061180G>A, -, c.26266C>T, c.(26266-26268)Cct>Tct, p.P8756S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[298](MUC16, 19, 9065866, 9065866, MISSENSE, SNP, C, T, g.chr19:9065866C>T, -, c.21580G>A, c.(21580-21582)Gaa>Aaa, p.E7194K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[299](MUC16, 19, 9066532, 9066532, MISSENSE, SNP, G, A, g.chr19:9066532G>A, -, c.20914C>T, c.(20914-20916)Ctt>Ttt, p.L6972F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[29](MUC16, 19, 9073306, 9073306, MISSENSE, SNP, C, A, g.chr19:9073306C>A, -, c.14140G>T, c.(14140-14142)Ggg>Tgg, p.G4714W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[2](MUC16, 19, 9091813, 9091813, START_CODON_SNP, SNP, A, G, g.chr19:9091813A>G, -, c.2T>C, c.(1-3)aTg>aCg, p.M1T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[300](MUC16, 19, 9077304, 9077304, MISSENSE, SNP, G, A, g.chr19:9077304G>A, -, c.10142C>T, c.(10141-10143)tCa>tTa, p.S3381L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[301](MUC16, 19, 9067504, 9067504, NONSENSE, SNP, C, A, g.chr19:9067504C>A, -, c.19942G>T, c.(19942-19944)Gag>Tag, p.E6648*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[302](MUC16, 19, 9017438, 9017438, MISSENSE, SNP, C, T, g.chr19:9017438C>T, -, c.37886G>A, c.(37885-37887)aGg>aAg, p.R12629K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[303](MUC16, 19, 9050196, 9050196, SILENT, SNP, G, A, g.chr19:9050196G>A, -, c.31435C>T, c.(31435-31437)Ctg>Ttg, p.L10479L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[304](MUC16, 19, 9085057, 9085057, MISSENSE, SNP, G, A, g.chr19:9085057G>A, -, c.6758C>T, c.(6757-6759)tCc>tTc, p.S2253F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[305](MUC16, 19, 9059370, 9059370, MISSENSE, SNP, C, T, g.chr19:9059370C>T, -, c.28076G>A, c.(28075-28077)aGg>aAg, p.R9359K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[306](MUC16, 19, 9063547, 9063547, MISSENSE, SNP, T, C, g.chr19:9063547T>C, -, c.23899A>G, c.(23899-23901)Aaa>Gaa, p.K7967E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[307](MUC16, 19, 9070708, 9070708, MISSENSE, SNP, G, A, g.chr19:9070708G>A, -, c.16738C>T, c.(16738-16740)Ctt>Ttt, p.L5580F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[308](MUC16, 19, 9071190, 9071190, MISSENSE, SNP, G, A, g.chr19:9071190G>A, -, c.16256C>T, c.(16255-16257)tCc>tTc, p.S5419F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[309](MUC16, 19, 9076306, 9076306, MISSENSE, SNP, G, A, g.chr19:9076306G>A, -, c.11140C>T, c.(11140-11142)Cat>Tat, p.H3714Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[30](MUC16, 19, 9077387, 9077387, SILENT, SNP, C, T, g.chr19:9077387C>T, -, c.10059G>A, c.(10057-10059)ggG>ggA, p.G3353G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[310](MUC16, 19, 9077720, 9077720, SILENT, SNP, C, T, g.chr19:9077720C>T, -, c.9726G>A, c.(9724-9726)gtG>gtA, p.V3242V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[311](MUC16, 19, 9086692, 9086692, MISSENSE, SNP, G, A, g.chr19:9086692G>A, -, c.5123C>T, c.(5122-5124)aCt>aTt, p.T1708I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[312](MUC16, 19, 9014639, 9014639, MISSENSE, SNP, C, T, g.chr19:9014639C>T, -, c.38336G>A, c.(38335-38337)aGc>aAc, p.S12779N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[313](MUC16, 19, 9068007, 9068007, MISSENSE, SNP, C, T, g.chr19:9068007C>T, -, c.19439G>A, c.(19438-19440)gGa>gAa, p.G6480E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[314](MUC16, 19, 9070509, 9070509, MISSENSE, SNP, G, A, g.chr19:9070509G>A, -, c.16937C>T, c.(16936-16938)tCc>tTc, p.S5646F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[315](MUC16, 19, 9074848, 9074848, SILENT, SNP, G, A, g.chr19:9074848G>A, -, c.12598C>T, c.(12598-12600)Ctg>Ttg, p.L4200L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[316](MUC16, 19, 9074858, 9074858, SILENT, SNP, C, T, g.chr19:9074858C>T, -, c.12588G>A, c.(12586-12588)gaG>gaA, p.E4196E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[317](MUC16, 19, 9077349, 9077349, MISSENSE, SNP, G, A, g.chr19:9077349G>A, -, c.10097C>T, c.(10096-10098)tCc>tTc, p.S3366F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[318](MUC16, 19, 9090186, 9090186, MISSENSE, SNP, C, T, g.chr19:9090186C>T, -, c.1629G>A, c.(1627-1629)atG>atA, p.M543I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[319](MUC16, 19, 9002184, 9002184, SILENT, SNP, G, A, g.chr19:9002184G>A, -, c.40320C>T, c.(40318-40320)ttC>ttT, p.F13440F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[31](MUC16, 19, 9083555, 9083555, NONSENSE, SNP, C, A, g.chr19:9083555C>A, -, c.8260G>T, c.(8260-8262)Gga>Tga, p.G2754*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[320](MUC16, 19, 9057400, 9057400, MISSENSE, SNP, C, T, g.chr19:9057400C>T, -, c.30046G>A, c.(30046-30048)Gaa>Aaa, p.E10016K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[321](MUC16, 19, 9060431, 9060431, SILENT, SNP, C, T, g.chr19:9060431C>T, -, c.27015G>A, c.(27013-27015)agG>agA, p.R9005R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[322](MUC16, 19, 9061149, 9061149, MISSENSE, SNP, G, A, g.chr19:9061149G>A, -, c.26297C>T, c.(26296-26298)tCc>tTc, p.S8766F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.096s |
passed |
| testCreateFuncotations[323](MUC16, 19, 9064338, 9064338, MISSENSE, SNP, G, A, g.chr19:9064338G>A, -, c.23108C>T, c.(23107-23109)tCc>tTc, p.S7703F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[324](MUC16, 19, 9065502, 9065502, MISSENSE, SNP, G, T, g.chr19:9065502G>T, -, c.21944C>A, c.(21943-21945)tCc>tAc, p.S7315Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[325](MUC16, 19, 9068396, 9068396, SILENT, SNP, G, A, g.chr19:9068396G>A, -, c.19050C>T, c.(19048-19050)tcC>tcT, p.S6350S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[326](MUC16, 19, 9068671, 9068671, SILENT, SNP, G, A, g.chr19:9068671G>A, -, c.18775C>T, c.(18775-18777)Ctg>Ttg, p.L6259L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[327](MUC16, 19, 9069839, 9069839, SILENT, SNP, C, T, g.chr19:9069839C>T, -, c.17607G>A, c.(17605-17607)ggG>ggA, p.G5869G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[328](MUC16, 19, 9090482, 9090482, MISSENSE, SNP, G, A, g.chr19:9090482G>A, -, c.1333C>T, c.(1333-1335)Cct>Tct, p.P445S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[329](MUC16, 19, 9064856, 9064856, SILENT, SNP, C, T, g.chr19:9064856C>T, -, c.22590G>A, c.(22588-22590)agG>agA, p.R7530R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[32](MUC16, 19, 9090344, 9090344, MISSENSE, SNP, C, A, g.chr19:9090344C>A, -, c.1471G>T, c.(1471-1473)Ggg>Tgg, p.G491W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[330](MUC16, 19, 9088132, 9088132, MISSENSE, SNP, G, A, g.chr19:9088132G>A, -, c.3683C>T, c.(3682-3684)tCa>tTa, p.S1228L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[331](MUC16, 19, 9089213, 9089213, MISSENSE, SNP, C, T, g.chr19:9089213C>T, -, c.2602G>A, c.(2602-2604)Gaa>Aaa, p.E868K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[332](MUC16, 19, 9062982, 9062982, MISSENSE, SNP, C, T, g.chr19:9062982C>T, -, c.24464G>A, c.(24463-24465)aGg>aAg, p.R8155K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[333](MUC16, 19, 9072844, 9072844, MISSENSE, SNP, C, T, g.chr19:9072844C>T, -, c.14602G>A, c.(14602-14604)Gaa>Aaa, p.E4868K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[334](MUC16, 19, 9091430, 9091430, MISSENSE, SNP, G, A, g.chr19:9091430G>A, -, c.385C>T, c.(385-387)Cca>Tca, p.P129S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[335](MUC16, 19, 8987332, 8987332, MISSENSE, SNP, C, A, g.chr19:8987332C>A, -, c.41755G>T, c.(41755-41757)Ggg>Tgg, p.G13919W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[336](MUC16, 19, 9049259, 9049259, MISSENSE, SNP, C, A, g.chr19:9049259C>A, -, c.32372G>T, c.(32371-32373)cGg>cTg, p.R10791L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[337](MUC16, 19, 9068456, 9068456, SILENT, SNP, G, T, g.chr19:9068456G>T, -, c.18990C>A, c.(18988-18990)tcC>tcA, p.S6330S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[338](MUC16, 19, 9072671, 9072671, SILENT, SNP, G, T, g.chr19:9072671G>T, -, c.14775C>A, c.(14773-14775)acC>acA, p.T4925T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[339](MUC16, 19, 9083846, 9083846, MISSENSE, SNP, G, C, g.chr19:9083846G>C, -, c.7969C>G, c.(7969-7971)Cca>Gca, p.P2657A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[33](MUC16, 19, 9005597, 9005597, MISSENSE, SNP, C, T, g.chr19:9005597C>T, -, c.39809G>A, c.(39808-39810)gGa>gAa, p.G13270E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[340](MUC16, 19, 9084638, 9084638, MISSENSE, SNP, G, A, g.chr19:9084638G>A, -, c.7177C>T, c.(7177-7179)Ccc>Tcc, p.P2393S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[341](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[342](MUC16, 19, 9018481, 9018481, MISSENSE, SNP, C, A, g.chr19:9018481C>A, -, c.37693G>T, c.(37693-37695)Ggc>Tgc, p.G12565C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[343](MUC16, 19, 9056225, 9056225, SILENT, SNP, C, A, g.chr19:9056225C>A, -, c.31221G>T, c.(31219-31221)ctG>ctT, p.L10407L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[344](MUC16, 19, 9087264, 9087264, MISSENSE, SNP, C, A, g.chr19:9087264C>A, -, c.4551G>T, c.(4549-4551)ttG>ttT, p.L1517F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[345](MUC16, 19, 9087950, 9087950, MISSENSE, SNP, G, T, g.chr19:9087950G>T, -, c.3865C>A, c.(3865-3867)Cac>Aac, p.H1289N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[346](MUC16, 19, 9089419, 9089419, MISSENSE, SNP, C, A, g.chr19:9089419C>A, -, c.2396G>T, c.(2395-2397)gGg>gTg, p.G799V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[347](MUC16, 19, 8995652, 8995652, MISSENSE, SNP, G, A, g.chr19:8995652G>A, -, c.41336C>T, c.(41335-41337)tCg>tTg, p.S13779L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[348](MUC16, 19, 9046923, 9046923, MISSENSE, SNP, C, T, g.chr19:9046923C>T, -, c.34708G>A, c.(34708-34710)Gaa>Aaa, p.E11570K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[349](MUC16, 19, 9088081, 9088081, MISSENSE, SNP, G, A, g.chr19:9088081G>A, -, c.3734C>T, c.(3733-3735)tCa>tTa, p.S1245L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[34](MUC16, 19, 9046505, 9046505, MISSENSE, SNP, G, A, g.chr19:9046505G>A, -, c.35126C>T, c.(35125-35127)tCc>tTc, p.S11709F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[350](MUC16, 19, 9056776, 9056776, MISSENSE, SNP, G, A, g.chr19:9056776G>A, -, c.30670C>T, c.(30670-30672)Cca>Tca, p.P10224S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[351](MUC16, 19, 9061059, 9061059, MISSENSE, SNP, G, T, g.chr19:9061059G>T, -, c.26387C>A, c.(26386-26388)gCa>gAa, p.A8796E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[352](MUC16, 19, 9091639, 9091639, MISSENSE, SNP, G, A, g.chr19:9091639G>A, -, c.176C>T, c.(175-177)tCc>tTc, p.S59F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[353](MUC16, 19, 9049482, 9049482, MISSENSE, SNP, C, A, g.chr19:9049482C>A, -, c.32149G>T, c.(32149-32151)Ggg>Tgg, p.G10717W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[354](MUC16, 19, 9067655, 9067655, SILENT, SNP, C, A, g.chr19:9067655C>A, -, c.19791G>T, c.(19789-19791)gtG>gtT, p.V6597V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[355](MUC16, 19, 9071189, 9071189, SILENT, SNP, G, T, g.chr19:9071189G>T, -, c.16257C>A, c.(16255-16257)tcC>tcA, p.S5419S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[356](MUC16, 19, 9086653, 9086653, MISSENSE, SNP, G, T, g.chr19:9086653G>T, -, c.5162C>A, c.(5161-5163)cCa>cAa, p.P1721Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[357](MUC16, 19, 9033650, 9033650, MISSENSE, SNP, G, A, g.chr19:9033650G>A, -, c.36287C>T, c.(36286-36288)tCc>tTc, p.S12096F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[358](MUC16, 19, 9058027, 9058027, MISSENSE, SNP, G, A, g.chr19:9058027G>A, -, c.29419C>T, c.(29419-29421)Cat>Tat, p.H9807Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[359](MUC16, 19, 9045740, 9045740, MISSENSE, SNP, G, A, g.chr19:9045740G>A, -, c.35891C>T, c.(35890-35892)cCa>cTa, p.P11964L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[35](MUC16, 19, 9046965, 9046965, MISSENSE, SNP, C, T, g.chr19:9046965C>T, -, c.34666G>A, c.(34666-34668)Gac>Aac, p.D11556N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[360](MUC16, 19, 9048867, 9048867, MISSENSE, SNP, G, A, g.chr19:9048867G>A, -, c.32764C>T, c.(32764-32766)Cca>Tca, p.P10922S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[361](MUC16, 19, 9064566, 9064566, MISSENSE, SNP, G, T, g.chr19:9064566G>T, -, c.22880C>A, c.(22879-22881)cCt>cAt, p.P7627H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[362](MUC16, 19, 9065041, 9065041, MISSENSE, SNP, C, T, g.chr19:9065041C>T, -, c.22405G>A, c.(22405-22407)Gag>Aag, p.E7469K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[363](MUC16, 19, 9061307, 9061307, SILENT, SNP, G, A, g.chr19:9061307G>A, -, c.26139C>T, c.(26137-26139)atC>atT, p.I8713I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[364](MUC16, 19, 9067346, 9067346, SILENT, SNP, G, A, g.chr19:9067346G>A, -, c.20100C>T, c.(20098-20100)tcC>tcT, p.S6700S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[365](MUC16, 19, 9083238, 9083238, SILENT, SNP, G, A, g.chr19:9083238G>A, -, c.8577C>T, c.(8575-8577)ctC>ctT, p.L2859L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[366](MUC16, 19, 9061796, 9061796, SILENT, SNP, C, T, g.chr19:9061796C>T, -, c.25650G>A, c.(25648-25650)ccG>ccA, p.P8550P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[367](MUC16, 19, 9064549, 9064549, MISSENSE, SNP, C, T, g.chr19:9064549C>T, -, c.22897G>A, c.(22897-22899)Gaa>Aaa, p.E7633K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[368](MUC16, 19, 9067219, 9067219, MISSENSE, SNP, G, A, g.chr19:9067219G>A, -, c.20227C>T, c.(20227-20229)Ctt>Ttt, p.L6743F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[369](MUC16, 19, 9085237, 9085237, MISSENSE, SNP, G, A, g.chr19:9085237G>A, -, c.6578C>T, c.(6577-6579)tCc>tTc, p.S2193F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[36](MUC16, 19, 9047228, 9047228, MISSENSE, SNP, C, A, g.chr19:9047228C>A, -, c.34403G>T, c.(34402-34404)gGg>gTg, p.G11468V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[370](MUC16, 19, 9088300, 9088300, MISSENSE, SNP, G, A, g.chr19:9088300G>A, -, c.3515C>T, c.(3514-3516)tCa>tTa, p.S1172L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[371](MUC16, 19, 9089999, 9089999, MISSENSE, SNP, G, A, g.chr19:9089999G>A, -, c.1816C>T, c.(1816-1818)Ccc>Tcc, p.P606S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[372](MUC16, 19, 9000458, 9000458, MISSENSE, SNP, C, T, g.chr19:9000458C>T, -, c.40526G>A, c.(40525-40527)aGa>aAa, p.R13509K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[373](MUC16, 19, 9006660, 9006660, SILENT, SNP, C, T, g.chr19:9006660C>T, -, c.39588G>A, c.(39586-39588)gaG>gaA, p.E13196E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[374](MUC16, 19, 9047843, 9047843, MISSENSE, SNP, T, A, g.chr19:9047843T>A, -, c.33788A>T, c.(33787-33789)aAt>aTt, p.N11263I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[375](MUC16, 19, 9056480, 9056480, SILENT, SNP, C, T, g.chr19:9056480C>T, -, c.30966G>A, c.(30964-30966)gaG>gaA, p.E10322E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[376](MUC16, 19, 9058876, 9058876, MISSENSE, SNP, C, T, g.chr19:9058876C>T, -, c.28570G>A, c.(28570-28572)Gaa>Aaa, p.E9524K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[377](MUC16, 19, 9059418, 9059418, MISSENSE, SNP, G, A, g.chr19:9059418G>A, -, c.28028C>T, c.(28027-28029)tCa>tTa, p.S9343L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[378](MUC16, 19, 9061851, 9061851, MISSENSE, SNP, G, A, g.chr19:9061851G>A, -, c.25595C>T, c.(25594-25596)tCa>tTa, p.S8532L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[379](MUC16, 19, 9062055, 9062055, MISSENSE, SNP, G, A, g.chr19:9062055G>A, -, c.25391C>T, c.(25390-25392)cCt>cTt, p.P8464L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[37](MUC16, 19, 9050038, 9050038, SILENT, SNP, G, A, g.chr19:9050038G>A, -, c.31593C>T, c.(31591-31593)ttC>ttT, p.F10531F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[380](MUC16, 19, 9063986, 9063986, SILENT, SNP, C, T, g.chr19:9063986C>T, -, c.23460G>A, c.(23458-23460)agG>agA, p.R7820R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[381](MUC16, 19, 9065739, 9065739, MISSENSE, SNP, A, T, g.chr19:9065739A>T, -, c.21707T>A, c.(21706-21708)aTt>aAt, p.I7236N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[382](MUC16, 19, 9070548, 9070548, MISSENSE, SNP, G, A, g.chr19:9070548G>A, -, c.16898C>T, c.(16897-16899)tCc>tTc, p.S5633F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.077s |
passed |
| testCreateFuncotations[383](MUC16, 19, 9071745, 9071745, MISSENSE, SNP, G, A, g.chr19:9071745G>A, -, c.15701C>T, c.(15700-15702)tCc>tTc, p.S5234F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[384](MUC16, 19, 9072287, 9072287, SILENT, SNP, G, A, g.chr19:9072287G>A, -, c.15159C>T, c.(15157-15159)tcC>tcT, p.S5053S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[385](MUC16, 19, 9073623, 9073623, MISSENSE, SNP, G, A, g.chr19:9073623G>A, -, c.13823C>T, c.(13822-13824)aCc>aTc, p.T4608I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[386](MUC16, 19, 9075829, 9075829, MISSENSE, SNP, C, T, g.chr19:9075829C>T, -, c.11617G>A, c.(11617-11619)Gaa>Aaa, p.E3873K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[387](MUC16, 19, 9077847, 9077847, MISSENSE, SNP, G, A, g.chr19:9077847G>A, -, c.9599C>T, c.(9598-9600)cCa>cTa, p.P3200L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[388](MUC16, 19, 9088521, 9088521, SILENT, SNP, C, T, g.chr19:9088521C>T, -, c.3294G>A, c.(3292-3294)agG>agA, p.R1098R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[389](MUC16, 19, 9090343, 9090343, MISSENSE, SNP, C, T, g.chr19:9090343C>T, -, c.1472G>A, c.(1471-1473)gGg>gAg, p.G491E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[38](MUC16, 19, 9066659, 9066659, SILENT, SNP, G, T, g.chr19:9066659G>T, -, c.20787C>A, c.(20785-20787)tcC>tcA, p.S6929S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.098s |
passed |
| testCreateFuncotations[390](MUC16, 19, 9091810, 9091810, MISSENSE, SNP, A, C, g.chr19:9091810A>C, -, c.5T>G, c.(4-6)cTg>cGg, p.L2R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[391](MUC16, 19, 8996474, 8996474, MISSENSE, SNP, C, T, g.chr19:8996474C>T, -, c.41098G>A, c.(41098-41100)Gcc>Acc, p.A13700T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[392](MUC16, 19, 8997440, 8997440, MISSENSE, SNP, T, G, g.chr19:8997440T>G, -, c.40982A>C, c.(40981-40983)aAc>aCc, p.N13661T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[393](MUC16, 19, 9066334, 9066334, MISSENSE, SNP, C, A, g.chr19:9066334C>A, -, c.21112G>T, c.(21112-21114)Ggg>Tgg, p.G7038W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[394](MUC16, 19, 9066461, 9066461, SILENT, SNP, G, T, g.chr19:9066461G>T, -, c.20985C>A, c.(20983-20985)tcC>tcA, p.S6995S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[395](MUC16, 19, 9066603, 9066603, MISSENSE, SNP, G, A, g.chr19:9066603G>A, -, c.20843C>T, c.(20842-20844)tCc>tTc, p.S6948F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[396](MUC16, 19, 9067326, 9067326, MISSENSE, SNP, G, A, g.chr19:9067326G>A, -, c.20120C>T, c.(20119-20121)tCc>tTc, p.S6707F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[397](MUC16, 19, 9070778, 9070778, SILENT, SNP, G, A, g.chr19:9070778G>A, -, c.16668C>T, c.(16666-16668)atC>atT, p.I5556I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[398](MUC16, 19, 9087904, 9087904, MISSENSE, SNP, G, A, g.chr19:9087904G>A, -, c.3911C>T, c.(3910-3912)tCa>tTa, p.S1304L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[399](MUC16, 19, 9088087, 9088087, MISSENSE, SNP, G, T, g.chr19:9088087G>T, -, c.3728C>A, c.(3727-3729)cCt>cAt, p.P1243H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[39](MUC16, 19, 9067654, 9067654, MISSENSE, SNP, C, A, g.chr19:9067654C>A, -, c.19792G>T, c.(19792-19794)Ggg>Tgg, p.G6598W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[3](MUC16, 19, 9091814, 9091814, START_CODON_SNP, SNP, T, A, g.chr19:9091814T>A, -, c.1A>T, c.(1-3)Atg>Ttg, p.M1L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[400](MUC16, 19, 9088100, 9088100, MISSENSE, SNP, G, T, g.chr19:9088100G>T, -, c.3715C>A, c.(3715-3717)Ctc>Atc, p.L1239I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[401](MUC16, 19, 9019292, 9019292, MISSENSE, SNP, G, A, g.chr19:9019292G>A, -, c.37595C>T, c.(37594-37596)tCc>tTc, p.S12532F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[402](MUC16, 19, 9072753, 9072753, MISSENSE, SNP, C, A, g.chr19:9072753C>A, -, c.14693G>T, c.(14692-14694)aGg>aTg, p.R4898M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[403](MUC16, 19, 8966742, 8966742, MISSENSE, SNP, C, T, g.chr19:8966742C>T, -, c.43211G>A, c.(43210-43212)aGa>aAa, p.R14404K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[404](MUC16, 19, 9066340, 9066340, MISSENSE, SNP, G, A, g.chr19:9066340G>A, -, c.21106C>T, c.(21106-21108)Cct>Tct, p.P7036S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[405](MUC16, 19, 9071592, 9071592, MISSENSE, SNP, G, A, g.chr19:9071592G>A, -, c.15854C>T, c.(15853-15855)cCc>cTc, p.P5285L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[406](MUC16, 19, 9073213, 9073213, MISSENSE, SNP, G, A, g.chr19:9073213G>A, -, c.14233C>T, c.(14233-14235)Ccc>Tcc, p.P4745S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[407](MUC16, 19, 9074987, 9074987, SILENT, SNP, C, T, g.chr19:9074987C>T, -, c.12459G>A, c.(12457-12459)gtG>gtA, p.V4153V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[408](MUC16, 19, 9085370, 9085370, MISSENSE, SNP, C, T, g.chr19:9085370C>T, -, c.6445G>A, c.(6445-6447)Gcc>Acc, p.A2149T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[409](MUC16, 19, 9086851, 9086851, MISSENSE, SNP, G, A, g.chr19:9086851G>A, -, c.4964C>T, c.(4963-4965)tCc>tTc, p.S1655F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[40](MUC16, 19, 9068209, 9068209, MISSENSE, SNP, C, A, g.chr19:9068209C>A, -, c.19237G>T, c.(19237-19239)Ggc>Tgc, p.G6413C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[410](MUC16, 19, 9090068, 9090068, MISSENSE, SNP, C, T, g.chr19:9090068C>T, -, c.1747G>A, c.(1747-1749)Gaa>Aaa, p.E583K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[411](MUC16, 19, 9091577, 9091577, MISSENSE, SNP, C, T, g.chr19:9091577C>T, -, c.238G>A, c.(238-240)Ggg>Agg, p.G80R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[412](MUC16, 19, 9020132, 9020132, MISSENSE, SNP, C, T, g.chr19:9020132C>T, -, c.37363G>A, c.(37363-37365)Gga>Aga, p.G12455R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[413](MUC16, 19, 9062771, 9062771, NONSENSE, SNP, C, T, g.chr19:9062771C>T, -, c.24675G>A, c.(24673-24675)tgG>tgA, p.W8225*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[414](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[415](MUC16, 19, 9057555, 9057555, MISSENSE, SNP, C, A, g.chr19:9057555C>A, -, c.29891G>T, c.(29890-29892)gGg>gTg, p.G9964V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[416](MUC16, 19, 9083532, 9083532, SILENT, SNP, G, A, g.chr19:9083532G>A, -, c.8283C>T, c.(8281-8283)ttC>ttT, p.F2761F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[417](MUC16, 19, 9008193, 9008193, MISSENSE, SNP, C, A, g.chr19:9008193C>A, -, c.39359G>T, c.(39358-39360)cGg>cTg, p.R13120L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[418](MUC16, 19, 9046738, 9046738, SILENT, SNP, C, T, g.chr19:9046738C>T, -, c.34893G>A, c.(34891-34893)gtG>gtA, p.V11631V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[419](MUC16, 19, 9085586, 9085586, MISSENSE, SNP, G, A, g.chr19:9085586G>A, -, c.6229C>T, c.(6229-6231)Cat>Tat, p.H2077Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[41](MUC16, 19, 9068327, 9068327, SILENT, SNP, G, A, g.chr19:9068327G>A, -, c.19119C>T, c.(19117-19119)acC>acT, p.T6373T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[420](MUC16, 19, 9047932, 9047932, SILENT, SNP, C, T, g.chr19:9047932C>T, -, c.33699G>A, c.(33697-33699)gaG>gaA, p.E11233E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[421](MUC16, 19, 9063136, 9063136, MISSENSE, SNP, C, A, g.chr19:9063136C>A, -, c.24310G>T, c.(24310-24312)Ggc>Tgc, p.G8104C, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[422](MUC16, 19, 9068414, 9068414, SILENT, SNP, G, A, g.chr19:9068414G>A, -, c.19032C>T, c.(19030-19032)tcC>tcT, p.S6344S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[423](MUC16, 19, 9090789, 9090789, SILENT, SNP, C, T, g.chr19:9090789C>T, -, c.1026G>A, c.(1024-1026)agG>agA, p.R342R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[424](MUC16, 19, 9091431, 9091431, SILENT, SNP, G, T, g.chr19:9091431G>T, -, c.384C>A, c.(382-384)tcC>tcA, p.S128S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[425](MUC16, 19, 9091671, 9091671, SILENT, SNP, G, A, g.chr19:9091671G>A, -, c.144C>T, c.(142-144)atC>atT, p.I48I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[426](MUC16, 19, 8995663, 8995663, SILENT, SNP, C, T, g.chr19:8995663C>T, -, c.41325G>A, c.(41323-41325)aaG>aaA, p.K13775K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[427](MUC16, 19, 9047480, 9047480, MISSENSE, SNP, C, A, g.chr19:9047480C>A, -, c.34151G>T, c.(34150-34152)gGg>gTg, p.G11384V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[428](MUC16, 19, 9047652, 9047652, MISSENSE, SNP, C, A, g.chr19:9047652C>A, -, c.33979G>T, c.(33979-33981)Ggg>Tgg, p.G11327W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[429](MUC16, 19, 9060353, 9060353, SILENT, SNP, C, T, g.chr19:9060353C>T, -, c.27093G>A, c.(27091-27093)acG>acA, p.T9031T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[42](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[430](MUC16, 19, 9061972, 9061972, MISSENSE, SNP, C, T, g.chr19:9061972C>T, -, c.25474G>A, c.(25474-25476)Gaa>Aaa, p.E8492K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[431](MUC16, 19, 9062059, 9062059, MISSENSE, SNP, C, A, g.chr19:9062059C>A, -, c.25387G>T, c.(25387-25389)Ggg>Tgg, p.G8463W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[432](MUC16, 19, 9065680, 9065680, NONSENSE, SNP, C, A, g.chr19:9065680C>A, -, c.21766G>T, c.(21766-21768)Gag>Tag, p.E7256*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.092s |
passed |
| testCreateFuncotations[433](MUC16, 19, 9066594, 9066594, MISSENSE, SNP, G, T, g.chr19:9066594G>T, -, c.20852C>A, c.(20851-20853)cCt>cAt, p.P6951H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[434](MUC16, 19, 9071306, 9071306, MISSENSE, SNP, C, A, g.chr19:9071306C>A, -, c.16140G>T, c.(16138-16140)ttG>ttT, p.L5380F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[435](MUC16, 19, 9076695, 9076695, MISSENSE, SNP, G, A, g.chr19:9076695G>A, -, c.10751C>T, c.(10750-10752)tCt>tTt, p.S3584F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[436](MUC16, 19, 9084523, 9084523, MISSENSE, SNP, G, A, g.chr19:9084523G>A, -, c.7292C>T, c.(7291-7293)tCc>tTc, p.S2431F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[437](MUC16, 19, 9057803, 9057803, SILENT, SNP, C, T, g.chr19:9057803C>T, -, c.29643G>A, c.(29641-29643)gaG>gaA, p.E9881E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[438](MUC16, 19, 9076183, 9076183, MISSENSE, SNP, G, T, g.chr19:9076183G>T, -, c.11263C>A, c.(11263-11265)Cag>Aag, p.Q3755K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[439](MUC16, 19, 9085579, 9085579, MISSENSE, SNP, C, A, g.chr19:9085579C>A, -, c.6236G>T, c.(6235-6237)gGg>gTg, p.G2079V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[43](MUC16, 19, 9071204, 9071204, SILENT, SNP, G, T, g.chr19:9071204G>T, -, c.16242C>A, c.(16240-16242)gcC>gcA, p.A5414A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[440](MUC16, 19, 9003603, 9003603, MISSENSE, SNP, C, T, g.chr19:9003603C>T, -, c.40037G>A, c.(40036-40038)aGg>aAg, p.R13346K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[441](MUC16, 19, 9058524, 9058524, MISSENSE, SNP, G, A, g.chr19:9058524G>A, -, c.28922C>T, c.(28921-28923)tCc>tTc, p.S9641F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[442](MUC16, 19, 9060792, 9060792, MISSENSE, SNP, G, A, g.chr19:9060792G>A, -, c.26654C>T, c.(26653-26655)tCt>tTt, p.S8885F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[443](MUC16, 19, 9066038, 9066038, SILENT, SNP, C, T, g.chr19:9066038C>T, -, c.21408G>A, c.(21406-21408)acG>acA, p.T7136T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[444](MUC16, 19, 9083300, 9083300, MISSENSE, SNP, C, T, g.chr19:9083300C>T, -, c.8515G>A, c.(8515-8517)Gct>Act, p.A2839T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[445](MUC16, 19, 9083630, 9083630, MISSENSE, SNP, G, A, g.chr19:9083630G>A, -, c.8185C>T, c.(8185-8187)Ccc>Tcc, p.P2729S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[446](MUC16, 19, 9091815, 9091815, FIVE_PRIME_UTR, SNP, G, A, g.chr19:9091815G>A, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.076s |
passed |
| testCreateFuncotations[447](MUC16, 19, 9072618, 9072618, MISSENSE, SNP, G, A, g.chr19:9072618G>A, -, c.14828C>T, c.(14827-14829)cCt>cTt, p.P4943L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[448](MUC16, 19, 9082451, 9082451, MISSENSE, SNP, T, C, g.chr19:9082451T>C, -, c.9364A>G, c.(9364-9366)Aca>Gca, p.T3122A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[449](MUC16, 19, 8995651, 8995651, SILENT, SNP, C, T, g.chr19:8995651C>T, -, c.41337G>A, c.(41335-41337)tcG>tcA, p.S13779S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[44](MUC16, 19, 9082454, 9082454, MISSENSE, SNP, G, T, g.chr19:9082454G>T, -, c.9361C>A, c.(9361-9363)Cca>Aca, p.P3121T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[450](MUC16, 19, 8999056, 8999056, SILENT, SNP, G, A, g.chr19:8999056G>A, -, c.40788C>T, c.(40786-40788)ttC>ttT, p.F13596F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[451](MUC16, 19, 8999545, 8999545, MISSENSE, SNP, C, T, g.chr19:8999545C>T, -, c.40630G>A, c.(40630-40632)Gcc>Acc, p.A13544T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[452](MUC16, 19, 9059785, 9059785, MISSENSE, SNP, C, T, g.chr19:9059785C>T, -, c.27661G>A, c.(27661-27663)Gag>Aag, p.E9221K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[453](MUC16, 19, 9064403, 9064403, SILENT, SNP, C, T, g.chr19:9064403C>T, -, c.23043G>A, c.(23041-23043)gtG>gtA, p.V7681V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[454](MUC16, 19, 9068247, 9068247, MISSENSE, SNP, C, T, g.chr19:9068247C>T, -, c.19199G>A, c.(19198-19200)aGa>aAa, p.R6400K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[455](MUC16, 19, 9075392, 9075392, SILENT, SNP, C, T, g.chr19:9075392C>T, -, c.12054G>A, c.(12052-12054)agG>agA, p.R4018R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[456](MUC16, 19, 9077118, 9077118, MISSENSE, SNP, G, A, g.chr19:9077118G>A, -, c.10328C>T, c.(10327-10329)tCt>tTt, p.S3443F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[457](MUC16, 19, 9089119, 9089119, MISSENSE, SNP, G, A, g.chr19:9089119G>A, -, c.2696C>T, c.(2695-2697)cCc>cTc, p.P899L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[458](MUC16, 19, 9047545, 9047545, SILENT, SNP, G, T, g.chr19:9047545G>T, -, c.34086C>A, c.(34084-34086)ccC>ccA, p.P11362P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[459](MUC16, 19, 9050121, 9050121, NONSENSE, SNP, C, A, g.chr19:9050121C>A, -, c.31510G>T, c.(31510-31512)Gga>Tga, p.G10504*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[45](MUC16, 19, 9085397, 9085397, MISSENSE, SNP, T, A, g.chr19:9085397T>A, -, c.6418A>T, c.(6418-6420)Atc>Ttc, p.I2140F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[460](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[461](MUC16, 19, 9072736, 9072736, MISSENSE, SNP, G, T, g.chr19:9072736G>T, -, c.14710C>A, c.(14710-14712)Cag>Aag, p.Q4904K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[462](MUC16, 19, 9075333, 9075333, MISSENSE, SNP, G, T, g.chr19:9075333G>T, -, c.12113C>A, c.(12112-12114)cCa>cAa, p.P4038Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[463](MUC16, 19, 8993038, 8993038, SILENT, SNP, G, A, g.chr19:8993038G>A, -, c.41721C>T, c.(41719-41721)ttC>ttT, p.F13907F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[464](MUC16, 19, 9046412, 9046412, MISSENSE, SNP, G, T, g.chr19:9046412G>T, -, c.35219C>A, c.(35218-35220)cCa>cAa, p.P11740Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[465](MUC16, 19, 9056344, 9056344, MISSENSE, SNP, C, T, g.chr19:9056344C>T, -, c.31102G>A, c.(31102-31104)Gag>Aag, p.E10368K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[466](MUC16, 19, 9062981, 9062981, SILENT, SNP, C, T, g.chr19:9062981C>T, -, c.24465G>A, c.(24463-24465)agG>agA, p.R8155R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[467](MUC16, 19, 9067595, 9067595, SILENT, SNP, G, T, g.chr19:9067595G>T, -, c.19851C>A, c.(19849-19851)ccC>ccA, p.P6617P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[468](MUC16, 19, 9088023, 9088023, SILENT, SNP, G, T, g.chr19:9088023G>T, -, c.3792C>A, c.(3790-3792)acC>acA, p.T1264T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[469](MUC16, 19, 9057555, 9057555, MISSENSE, SNP, C, A, g.chr19:9057555C>A, -, c.29891G>T, c.(29890-29892)gGg>gTg, p.G9964V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[46](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[470](MUC16, 19, 9060665, 9060665, MISSENSE, SNP, C, A, g.chr19:9060665C>A, -, c.26781G>T, c.(26779-26781)atG>atT, p.M8927I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[471](MUC16, 19, 9067289, 9067289, SILENT, SNP, G, T, g.chr19:9067289G>T, -, c.20157C>A, c.(20155-20157)ccC>ccA, p.P6719P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[472](MUC16, 19, 9067325, 9067325, SILENT, SNP, G, T, g.chr19:9067325G>T, -, c.20121C>A, c.(20119-20121)tcC>tcA, p.S6707S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.096s |
passed |
| testCreateFuncotations[473](MUC16, 19, 9067509, 9067509, MISSENSE, SNP, C, A, g.chr19:9067509C>A, -, c.19937G>T, c.(19936-19938)aGg>aTg, p.R6646M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[474](MUC16, 19, 9067595, 9067595, SILENT, SNP, G, T, g.chr19:9067595G>T, -, c.19851C>A, c.(19849-19851)ccC>ccA, p.P6617P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[475](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[476](MUC16, 19, 9072947, 9072947, SILENT, SNP, G, T, g.chr19:9072947G>T, -, c.14499C>A, c.(14497-14499)acC>acA, p.T4833T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[477](MUC16, 19, 9075334, 9075334, MISSENSE, SNP, G, T, g.chr19:9075334G>T, -, c.12112C>A, c.(12112-12114)Cca>Aca, p.P4038T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[478](MUC16, 19, 9087035, 9087035, MISSENSE, SNP, C, A, g.chr19:9087035C>A, -, c.4780G>T, c.(4780-4782)Ggg>Tgg, p.G1594W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[479](MUC16, 19, 9087881, 9087881, MISSENSE, SNP, C, T, g.chr19:9087881C>T, -, c.3934G>A, c.(3934-3936)Gag>Aag, p.E1312K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[47](MUC16, 19, 8976592, 8976592, SILENT, SNP, C, T, g.chr19:8976592C>T, -, c.42384G>A, c.(42382-42384)ctG>ctA, p.L14128L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[480](MUC16, 19, 9046973, 9046973, MISSENSE, SNP, G, A, g.chr19:9046973G>A, -, c.34658C>T, c.(34657-34659)tCt>tTt, p.S11553F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[481](MUC16, 19, 9048951, 9048951, MISSENSE, SNP, G, A, g.chr19:9048951G>A, -, c.32680C>T, c.(32680-32682)Cca>Tca, p.P10894S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[482](MUC16, 19, 9056776, 9056776, MISSENSE, SNP, G, A, g.chr19:9056776G>A, -, c.30670C>T, c.(30670-30672)Cca>Tca, p.P10224S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[483](MUC16, 19, 9060381, 9060381, MISSENSE, SNP, A, G, g.chr19:9060381A>G, -, c.27065T>C, c.(27064-27066)gTt>gCt, p.V9022A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[484](MUC16, 19, 9072508, 9072508, MISSENSE, SNP, G, A, g.chr19:9072508G>A, -, c.14938C>T, c.(14938-14940)Cct>Tct, p.P4980S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[485](MUC16, 19, 9073507, 9073507, MISSENSE, SNP, G, A, g.chr19:9073507G>A, -, c.13939C>T, c.(13939-13941)Cca>Tca, p.P4647S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[486](MUC16, 19, 9084790, 9084790, MISSENSE, SNP, G, A, g.chr19:9084790G>A, -, c.7025C>T, c.(7024-7026)tCa>tTa, p.S2342L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[487](MUC16, 19, 9088815, 9088815, MISSENSE, SNP, T, A, g.chr19:9088815T>A, -, c.3000A>T, c.(2998-3000)aaA>aaT, p.K1000N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[488](MUC16, 19, 8993535, 8993535, MISSENSE, SNP, C, T, g.chr19:8993535C>T, -, c.41554G>A, c.(41554-41556)Gat>Aat, p.D13852N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[489](MUC16, 19, 9084665, 9084665, MISSENSE, SNP, C, T, g.chr19:9084665C>T, -, c.7150G>A, c.(7150-7152)Gat>Aat, p.D2384N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[48](MUC16, 19, 9016683, 9016683, MISSENSE, SNP, G, A, g.chr19:9016683G>A, -, c.38054C>T, c.(38053-38055)cCa>cTa, p.P12685L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[490](MUC16, 19, 9087944, 9087944, MISSENSE, SNP, G, A, g.chr19:9087944G>A, -, c.3871C>T, c.(3871-3873)Cat>Tat, p.H1291Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[491](MUC16, 19, 9089551, 9089551, MISSENSE, SNP, C, T, g.chr19:9089551C>T, -, c.2264G>A, c.(2263-2265)gGg>gAg, p.G755E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[492](MUC16, 19, 9091275, 9091275, NONSENSE, SNP, C, T, g.chr19:9091275C>T, -, c.540G>A, c.(538-540)tgG>tgA, p.W180*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[493](MUC16, 19, 9047822, 9047822, MISSENSE, SNP, G, A, g.chr19:9047822G>A, -, c.33809C>T, c.(33808-33810)cCt>cTt, p.P11270L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[494](MUC16, 19, 9069347, 9069347, SILENT, SNP, G, A, g.chr19:9069347G>A, -, c.18099C>T, c.(18097-18099)tcC>tcT, p.S6033S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[495](MUC16, 19, 8974062, 8974062, SILENT, SNP, C, T, g.chr19:8974062C>T, -, c.42609G>A, c.(42607-42609)caG>caA, p.Q14203Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[496](MUC16, 19, 9010676, 9010676, SILENT, SNP, C, T, g.chr19:9010676C>T, -, c.38985G>A, c.(38983-38985)ggG>ggA, p.G12995G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[497](MUC16, 19, 9024172, 9024172, MISSENSE, SNP, C, T, g.chr19:9024172C>T, -, c.37100G>A, c.(37099-37101)aGa>aAa, p.R12367K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[498](MUC16, 19, 9026299, 9026299, SILENT, SNP, C, T, g.chr19:9026299C>T, -, c.36687G>A, c.(36685-36687)ctG>ctA, p.L12229L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[499](MUC16, 19, 9057930, 9057930, MISSENSE, SNP, G, A, g.chr19:9057930G>A, -, c.29516C>T, c.(29515-29517)aCc>aTc, p.T9839I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[49](MUC16, 19, 9049091, 9049091, MISSENSE, SNP, G, A, g.chr19:9049091G>A, -, c.32540C>T, c.(32539-32541)tCa>tTa, p.S10847L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[4](MUC16, 19, 9091815, 9091815, FIVE_PRIME_UTR, SNP, G, A, g.chr19:9091815G>A, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[500](MUC16, 19, 9062579, 9062579, SILENT, SNP, G, A, g.chr19:9062579G>A, -, c.24867C>T, c.(24865-24867)ttC>ttT, p.F8289F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[501](MUC16, 19, 9063832, 9063832, MISSENSE, SNP, G, A, g.chr19:9063832G>A, -, c.23614C>T, c.(23614-23616)Cca>Tca, p.P7872S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[502](MUC16, 19, 9068846, 9068846, MISSENSE, SNP, C, T, g.chr19:9068846C>T, -, c.18600G>A, c.(18598-18600)atG>atA, p.M6200I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[503](MUC16, 19, 9072100, 9072100, MISSENSE, SNP, C, T, g.chr19:9072100C>T, -, c.15346G>A, c.(15346-15348)Gaa>Aaa, p.E5116K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[504](MUC16, 19, 9073396, 9073396, MISSENSE, SNP, C, T, g.chr19:9073396C>T, -, c.14050G>A, c.(14050-14052)Ggg>Agg, p.G4684R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[505](MUC16, 19, 9075372, 9075372, MISSENSE, SNP, T, A, g.chr19:9075372T>A, -, c.12074A>T, c.(12073-12075)gAc>gTc, p.D4025V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[506](MUC16, 19, 9077049, 9077049, MISSENSE, SNP, G, A, g.chr19:9077049G>A, -, c.10397C>T, c.(10396-10398)tCt>tTt, p.S3466F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[507](MUC16, 19, 9086706, 9086706, SILENT, SNP, G, A, g.chr19:9086706G>A, -, c.5109C>T, c.(5107-5109)gtC>gtT, p.V1703V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[508](MUC16, 19, 9087251, 9087251, MISSENSE, SNP, C, T, g.chr19:9087251C>T, -, c.4564G>A, c.(4564-4566)Gga>Aga, p.G1522R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[509](MUC16, 19, 8976789, 8976789, MISSENSE, SNP, C, T, g.chr19:8976789C>T, -, c.42277G>A, c.(42277-42279)Ggc>Agc, p.G14093S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[50](MUC16, 19, 9070835, 9070835, SILENT, SNP, G, A, g.chr19:9070835G>A, -, c.16611C>T, c.(16609-16611)ccC>ccT, p.P5537P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[510](MUC16, 19, 9007833, 9007833, MISSENSE, SNP, G, A, g.chr19:9007833G>A, -, c.39391C>T, c.(39391-39393)Cgg>Tgg, p.R13131W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[511](MUC16, 19, 9049605, 9049605, MISSENSE, SNP, C, T, g.chr19:9049605C>T, -, c.32026G>A, c.(32026-32028)Gaa>Aaa, p.E10676K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[512](MUC16, 19, 9065577, 9065577, MISSENSE, SNP, G, A, g.chr19:9065577G>A, -, c.21869C>T, c.(21868-21870)tCc>tTc, p.S7290F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[513](MUC16, 19, 9068354, 9068354, SILENT, SNP, C, T, g.chr19:9068354C>T, -, c.19092G>A, c.(19090-19092)ctG>ctA, p.L6364L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[514](MUC16, 19, 9068830, 9068830, MISSENSE, SNP, C, T, g.chr19:9068830C>T, -, c.18616G>A, c.(18616-18618)Gat>Aat, p.D6206N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[515](MUC16, 19, 9074898, 9074898, MISSENSE, SNP, G, A, g.chr19:9074898G>A, -, c.12548C>T, c.(12547-12549)cCc>cTc, p.P4183L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[516](MUC16, 19, 9087098, 9087098, MISSENSE, SNP, C, T, g.chr19:9087098C>T, -, c.4717G>A, c.(4717-4719)Gat>Aat, p.D1573N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[517](MUC16, 19, 9058260, 9058260, MISSENSE, SNP, G, A, g.chr19:9058260G>A, -, c.29186C>T, c.(29185-29187)tCt>tTt, p.S9729F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[518](MUC16, 19, 9067908, 9067908, MISSENSE, SNP, G, A, g.chr19:9067908G>A, -, c.19538C>T, c.(19537-19539)tCc>tTc, p.S6513F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[519](MUC16, 19, 9089612, 9089612, MISSENSE, SNP, C, T, g.chr19:9089612C>T, -, c.2203G>A, c.(2203-2205)Gat>Aat, p.D735N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[51](MUC16, 19, 9049537, 9049537, SILENT, SNP, G, A, g.chr19:9049537G>A, -, c.32094C>T, c.(32092-32094)atC>atT, p.I10698I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[520](MUC16, 19, 9048836, 9048836, MISSENSE, SNP, C, T, g.chr19:9048836C>T, -, c.32795G>A, c.(32794-32796)gGa>gAa, p.G10932E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[521](MUC16, 19, 9017514, 9017514, MISSENSE, SNP, C, T, g.chr19:9017514C>T, -, c.37810G>A, c.(37810-37812)Gag>Aag, p.E12604K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[522](MUC16, 19, 9048383, 9048383, MISSENSE, SNP, G, A, g.chr19:9048383G>A, -, c.33248C>T, c.(33247-33249)tCa>tTa, p.S11083L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[523](MUC16, 19, 9019313, 9019313, MISSENSE, SNP, C, T, g.chr19:9019313C>T, -, c.37574G>A, c.(37573-37575)gGa>gAa, p.G12525E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[524](MUC16, 19, 9024180, 9024180, SILENT, SNP, C, T, g.chr19:9024180C>T, -, c.37092G>A, c.(37090-37092)gtG>gtA, p.V12364V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[525](MUC16, 19, 9058777, 9058777, MISSENSE, SNP, C, T, g.chr19:9058777C>T, -, c.28669G>A, c.(28669-28671)Gac>Aac, p.D9557N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[526](MUC16, 19, 9064799, 9064799, SILENT, SNP, G, A, g.chr19:9064799G>A, -, c.22647C>T, c.(22645-22647)acC>acT, p.T7549T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[527](MUC16, 19, 9066182, 9066182, SILENT, SNP, G, A, g.chr19:9066182G>A, -, c.21264C>T, c.(21262-21264)ccC>ccT, p.P7088P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[528](MUC16, 19, 9067633, 9067633, MISSENSE, SNP, C, T, g.chr19:9067633C>T, -, c.19813G>A, c.(19813-19815)Gaa>Aaa, p.E6605K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[529](MUC16, 19, 9070319, 9070319, SILENT, SNP, G, A, g.chr19:9070319G>A, -, c.17127C>T, c.(17125-17127)gcC>gcT, p.A5709A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[52](MUC16, 19, 9064721, 9064721, SILENT, SNP, G, A, g.chr19:9064721G>A, -, c.22725C>T, c.(22723-22725)tcC>tcT, p.S7575S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[530](MUC16, 19, 9071657, 9071657, MISSENSE, SNP, T, A, g.chr19:9071657T>A, -, c.15789A>T, c.(15787-15789)aaA>aaT, p.K5263N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[531](MUC16, 19, 9074385, 9074385, MISSENSE, SNP, G, A, g.chr19:9074385G>A, -, c.13061C>T, c.(13060-13062)tCa>tTa, p.S4354L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[532](MUC16, 19, 9082654, 9082654, MISSENSE, SNP, G, A, g.chr19:9082654G>A, -, c.9161C>T, c.(9160-9162)tCa>tTa, p.S3054L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[533](MUC16, 19, 9083224, 9083224, MISSENSE, SNP, G, A, g.chr19:9083224G>A, -, c.8591C>T, c.(8590-8592)tCt>tTt, p.S2864F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[534](MUC16, 19, 9089417, 9089417, MISSENSE, SNP, C, T, g.chr19:9089417C>T, -, c.2398G>A, c.(2398-2400)Gaa>Aaa, p.E800K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[535](MUC16, 19, 9089977, 9089977, MISSENSE, SNP, C, T, g.chr19:9089977C>T, -, c.1838G>A, c.(1837-1839)gGa>gAa, p.G613E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.094s |
passed |
| testCreateFuncotations[536](MUC16, 19, 9049206, 9049206, NONSENSE, SNP, G, A, g.chr19:9049206G>A, -, c.32425C>T, c.(32425-32427)Cga>Tga, p.R10809*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[537](MUC16, 19, 9090102, 9090102, SILENT, SNP, G, A, g.chr19:9090102G>A, -, c.1713C>T, c.(1711-1713)acC>acT, p.T571T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[538](MUC16, 19, 9065994, 9065994, MISSENSE, SNP, G, A, g.chr19:9065994G>A, -, c.21452C>T, c.(21451-21453)tCa>tTa, p.S7151L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[539](MUC16, 19, 9066578, 9066578, SILENT, SNP, G, A, g.chr19:9066578G>A, -, c.20868C>T, c.(20866-20868)acC>acT, p.T6956T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[53](MUC16, 19, 9066184, 9066184, MISSENSE, SNP, G, A, g.chr19:9066184G>A, -, c.21262C>T, c.(21262-21264)Ccc>Tcc, p.P7088S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[540](MUC16, 19, 9083882, 9083882, MISSENSE, SNP, G, A, g.chr19:9083882G>A, -, c.7933C>T, c.(7933-7935)Ccg>Tcg, p.P2645S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[541](MUC16, 19, 8976763, 8976763, SILENT, SNP, G, A, g.chr19:8976763G>A, -, c.42303C>T, c.(42301-42303)tcC>tcT, p.S14101S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[542](MUC16, 19, 9089089, 9089089, MISSENSE, SNP, G, A, g.chr19:9089089G>A, -, c.2726C>T, c.(2725-2727)gCt>gTt, p.A909V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[543](MUC16, 19, 9059200, 9059200, MISSENSE, SNP, G, A, g.chr19:9059200G>A, -, c.28246C>T, c.(28246-28248)Cct>Tct, p.P9416S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[544](MUC16, 19, 9061397, 9061397, SILENT, SNP, C, T, g.chr19:9061397C>T, -, c.26049G>A, c.(26047-26049)ggG>ggA, p.G8683G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[545](MUC16, 19, 9065681, 9065681, SILENT, SNP, C, T, g.chr19:9065681C>T, -, c.21765G>A, c.(21763-21765)gtG>gtA, p.V7255V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[546](MUC16, 19, 9048950, 9048950, MISSENSE, SNP, G, A, g.chr19:9048950G>A, -, c.32681C>T, c.(32680-32682)cCa>cTa, p.P10894L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[547](MUC16, 19, 9061069, 9061069, MISSENSE, SNP, G, A, g.chr19:9061069G>A, -, c.26377C>T, c.(26377-26379)Cat>Tat, p.H8793Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[548](MUC16, 19, 9071105, 9071105, SILENT, SNP, C, T, g.chr19:9071105C>T, -, c.16341G>A, c.(16339-16341)tcG>tcA, p.S5447S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[549](MUC16, 19, 9090567, 9090567, SILENT, SNP, C, T, g.chr19:9090567C>T, -, c.1248G>A, c.(1246-1248)gaG>gaA, p.E416E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[54](MUC16, 19, 9066520, 9066520, MISSENSE, SNP, G, A, g.chr19:9066520G>A, -, c.20926C>T, c.(20926-20928)Ccc>Tcc, p.P6976S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[550](MUC16, 19, 9056557, 9056557, MISSENSE, SNP, C, T, g.chr19:9056557C>T, -, c.30889G>A, c.(30889-30891)Gcc>Acc, p.A10297T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[551](MUC16, 19, 9058359, 9058359, MISSENSE, SNP, C, T, g.chr19:9058359C>T, -, c.29087G>A, c.(29086-29088)gGa>gAa, p.G9696E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[552](MUC16, 19, 9058106, 9058106, SILENT, SNP, G, A, g.chr19:9058106G>A, -, c.29340C>T, c.(29338-29340)acC>acT, p.T9780T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[553](MUC16, 19, 9024197, 9024197, MISSENSE, SNP, G, A, g.chr19:9024197G>A, -, c.37075C>T, c.(37075-37077)Cct>Tct, p.P12359S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[554](MUC16, 19, 9047620, 9047620, SILENT, SNP, C, A, g.chr19:9047620C>A, -, c.34011G>T, c.(34009-34011)gtG>gtT, p.V11337V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[555](MUC16, 19, 9059063, 9059063, SILENT, SNP, G, A, g.chr19:9059063G>A, -, c.28383C>T, c.(28381-28383)gtC>gtT, p.V9461V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[556](MUC16, 19, 9062027, 9062027, SILENT, SNP, G, A, g.chr19:9062027G>A, -, c.25419C>T, c.(25417-25419)atC>atT, p.I8473I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[557](MUC16, 19, 9088326, 9088326, SILENT, SNP, G, T, g.chr19:9088326G>T, -, c.3489C>A, c.(3487-3489)ccC>ccA, p.P1163P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[558](MUC16, 19, 9026203, 9026203, SILENT, SNP, G, A, g.chr19:9026203G>A, -, c.36783C>T, c.(36781-36783)gtC>gtT, p.V12261V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[559](MUC16, 19, 9046630, 9046630, SILENT, SNP, C, T, g.chr19:9046630C>T, -, c.35001G>A, c.(34999-35001)ggG>ggA, p.G11667G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[55](MUC16, 19, 9073897, 9073897, MISSENSE, SNP, C, T, g.chr19:9073897C>T, -, c.13549G>A, c.(13549-13551)Gag>Aag, p.E4517K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[560](MUC16, 19, 9058049, 9058049, SILENT, SNP, G, A, g.chr19:9058049G>A, -, c.29397C>T, c.(29395-29397)atC>atT, p.I9799I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[561](MUC16, 19, 9061992, 9061992, MISSENSE, SNP, G, A, g.chr19:9061992G>A, -, c.25454C>T, c.(25453-25455)cCc>cTc, p.P8485L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[562](MUC16, 19, 9068001, 9068001, MISSENSE, SNP, G, A, g.chr19:9068001G>A, -, c.19445C>T, c.(19444-19446)tCa>tTa, p.S6482L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[563](MUC16, 19, 9068306, 9068306, SILENT, SNP, G, A, g.chr19:9068306G>A, -, c.19140C>T, c.(19138-19140)tcC>tcT, p.S6380S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[564](MUC16, 19, 9076401, 9076401, MISSENSE, SNP, C, T, g.chr19:9076401C>T, -, c.11045G>A, c.(11044-11046)aGg>aAg, p.R3682K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[565](MUC16, 19, 9085991, 9085991, MISSENSE, SNP, G, A, g.chr19:9085991G>A, -, c.5824C>T, c.(5824-5826)Cca>Tca, p.P1942S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[566](MUC16, 19, 9087601, 9087601, MISSENSE, SNP, G, A, g.chr19:9087601G>A, -, c.4214C>T, c.(4213-4215)tCa>tTa, p.S1405L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[567](MUC16, 19, 9089904, 9089904, SILENT, SNP, G, A, g.chr19:9089904G>A, -, c.1911C>T, c.(1909-1911)tcC>tcT, p.S637S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[568](MUC16, 19, 9064001, 9064001, SILENT, SNP, G, A, g.chr19:9064001G>A, -, c.23445C>T, c.(23443-23445)ttC>ttT, p.F7815F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[569](MUC16, 19, 9065029, 9065029, MISSENSE, SNP, G, A, g.chr19:9065029G>A, -, c.22417C>T, c.(22417-22419)Cct>Tct, p.P7473S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[56](MUC16, 19, 9021104, 9021104, MISSENSE, SNP, G, A, g.chr19:9021104G>A, -, c.37219C>T, c.(37219-37221)Cac>Tac, p.H12407Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[570](MUC16, 19, 9075173, 9075173, MISSENSE, SNP, C, T, g.chr19:9075173C>T, -, c.12273G>A, c.(12271-12273)atG>atA, p.M4091I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[571](MUC16, 19, 9077809, 9077809, MISSENSE, SNP, C, T, g.chr19:9077809C>T, -, c.9637G>A, c.(9637-9639)Gaa>Aaa, p.E3213K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[572](MUC16, 19, 9089658, 9089658, SILENT, SNP, C, T, g.chr19:9089658C>T, -, c.2157G>A, c.(2155-2157)aaG>aaA, p.K719K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[573](MUC16, 19, 9057123, 9057123, MISSENSE, SNP, C, T, g.chr19:9057123C>T, -, c.30323G>A, c.(30322-30324)gGa>gAa, p.G10108E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[574](MUC16, 19, 9072556, 9072556, MISSENSE, SNP, G, T, g.chr19:9072556G>T, -, c.14890C>A, c.(14890-14892)Cca>Aca, p.P4964T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[575](MUC16, 19, 9073406, 9073406, SILENT, SNP, G, T, g.chr19:9073406G>T, -, c.14040C>A, c.(14038-14040)acC>acA, p.T4680T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[576](MUC16, 19, 9077090, 9077090, SILENT, SNP, G, A, g.chr19:9077090G>A, -, c.10356C>T, c.(10354-10356)atC>atT, p.I3452I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[577](MUC16, 19, 9077854, 9077854, NONSENSE, SNP, C, A, g.chr19:9077854C>A, -, c.9592G>T, c.(9592-9594)Gga>Tga, p.G3198*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[578](MUC16, 19, 9084602, 9084602, MISSENSE, SNP, G, T, g.chr19:9084602G>T, -, c.7213C>A, c.(7213-7215)Cca>Aca, p.P2405T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[579](MUC16, 19, 9085932, 9085932, SILENT, SNP, G, T, g.chr19:9085932G>T, -, c.5883C>A, c.(5881-5883)ccC>ccA, p.P1961P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[57](MUC16, 19, 9062082, 9062082, MISSENSE, SNP, G, A, g.chr19:9062082G>A, -, c.25364C>T, c.(25363-25365)tCc>tTc, p.S8455F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[580](MUC16, 19, 9066699, 9066699, MISSENSE, SNP, G, T, g.chr19:9066699G>T, -, c.20747C>A, c.(20746-20748)cCa>cAa, p.P6916Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[581](MUC16, 19, 9061767, 9061767, MISSENSE, SNP, G, A, g.chr19:9061767G>A, -, c.25679C>T, c.(25678-25680)tCt>tTt, p.S8560F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[582](MUC16, 19, 8993030, 8993030, MISSENSE, SNP, C, A, g.chr19:8993030C>A, -, c.41729G>T, c.(41728-41730)cGg>cTg, p.R13910L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.114s |
passed |
| testCreateFuncotations[583](MUC16, 19, 8994501, 8994501, SILENT, SNP, G, A, g.chr19:8994501G>A, -, c.41391C>T, c.(41389-41391)ttC>ttT, p.F13797F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[584](MUC16, 19, 9009653, 9009653, MISSENSE, SNP, C, A, g.chr19:9009653C>A, -, c.39073G>T, c.(39073-39075)Ggg>Tgg, p.G13025W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[585](MUC16, 19, 9011397, 9011397, MISSENSE, SNP, C, T, g.chr19:9011397C>T, -, c.38836G>A, c.(38836-38838)Gag>Aag, p.E12946K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[586](MUC16, 19, 9020785, 9020785, SILENT, SNP, G, A, g.chr19:9020785G>A, -, c.37317C>T, c.(37315-37317)ggC>ggT, p.G12439G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[587](MUC16, 19, 9049298, 9049298, MISSENSE, SNP, G, A, g.chr19:9049298G>A, -, c.32333C>T, c.(32332-32334)tCg>tTg, p.S10778L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[588](MUC16, 19, 9049400, 9049400, MISSENSE, SNP, G, A, g.chr19:9049400G>A, -, c.32231C>T, c.(32230-32232)tCt>tTt, p.S10744F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[589](MUC16, 19, 9049903, 9049903, SILENT, SNP, C, T, g.chr19:9049903C>T, -, c.31728G>A, c.(31726-31728)ggG>ggA, p.G10576G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[58](MUC16, 19, 9063434, 9063434, SILENT, SNP, G, A, g.chr19:9063434G>A, -, c.24012C>T, c.(24010-24012)ctC>ctT, p.L8004L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[590](MUC16, 19, 9059043, 9059043, MISSENSE, SNP, G, A, g.chr19:9059043G>A, -, c.28403C>T, c.(28402-28404)aCc>aTc, p.T9468I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[591](MUC16, 19, 9062188, 9062188, MISSENSE, SNP, C, T, g.chr19:9062188C>T, -, c.25258G>A, c.(25258-25260)Gag>Aag, p.E8420K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[592](MUC16, 19, 9063016, 9063016, MISSENSE, SNP, C, T, g.chr19:9063016C>T, -, c.24430G>A, c.(24430-24432)Gga>Aga, p.G8144R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[593](MUC16, 19, 9066494, 9066494, SILENT, SNP, G, A, g.chr19:9066494G>A, -, c.20952C>T, c.(20950-20952)tcC>tcT, p.S6984S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[594](MUC16, 19, 9070251, 9070251, MISSENSE, SNP, G, A, g.chr19:9070251G>A, -, c.17195C>T, c.(17194-17196)tCa>tTa, p.S5732L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[595](MUC16, 19, 9072091, 9072091, MISSENSE, SNP, G, A, g.chr19:9072091G>A, -, c.15355C>T, c.(15355-15357)Cct>Tct, p.P5119S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[596](MUC16, 19, 9075747, 9075747, MISSENSE, SNP, G, A, g.chr19:9075747G>A, -, c.11699C>T, c.(11698-11700)tCc>tTc, p.S3900F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[597](MUC16, 19, 9085838, 9085838, MISSENSE, SNP, C, T, g.chr19:9085838C>T, -, c.5977G>A, c.(5977-5979)Gaa>Aaa, p.E1993K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[598](MUC16, 19, 9085999, 9085999, MISSENSE, SNP, G, A, g.chr19:9085999G>A, -, c.5816C>T, c.(5815-5817)tCa>tTa, p.S1939L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[599](MUC16, 19, 9088160, 9088160, MISSENSE, SNP, G, A, g.chr19:9088160G>A, -, c.3655C>T, c.(3655-3657)Ccc>Tcc, p.P1219S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[59](MUC16, 19, 9063268, 9063268, MISSENSE, SNP, C, T, g.chr19:9063268C>T, -, c.24178G>A, c.(24178-24180)Gat>Aat, p.D8060N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[5](MUC16, 19, 8959605, 8959605, THREE_PRIME_UTR, SNP, C, A, g.chr19:8959605C>A, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[600](MUC16, 19, 9091122, 9091122, SILENT, SNP, C, T, g.chr19:9091122C>T, -, c.693G>A, c.(691-693)ggG>ggA, p.G231G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[601](MUC16, 19, 8995693, 8995693, SILENT, SNP, C, T, g.chr19:8995693C>T, -, c.41295G>A, c.(41293-41295)ggG>ggA, p.G13765G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[602](MUC16, 19, 9005631, 9005631, SILENT, SNP, G, A, g.chr19:9005631G>A, -, c.39775C>T, c.(39775-39777)Ctg>Ttg, p.L13259L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[603](MUC16, 19, 9066121, 9066121, MISSENSE, SNP, G, A, g.chr19:9066121G>A, -, c.21325C>T, c.(21325-21327)Cct>Tct, p.P7109S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[604](MUC16, 19, 9075211, 9075211, SILENT, SNP, G, A, g.chr19:9075211G>A, -, c.12235C>T, c.(12235-12237)Ctg>Ttg, p.L4079L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[605](MUC16, 19, 9076139, 9076139, SILENT, SNP, G, A, g.chr19:9076139G>A, -, c.11307C>T, c.(11305-11307)atC>atT, p.I3769I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[606](MUC16, 19, 9083269, 9083269, MISSENSE, SNP, G, A, g.chr19:9083269G>A, -, c.8546C>T, c.(8545-8547)cCt>cTt, p.P2849L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[607](MUC16, 19, 9090293, 9090293, MISSENSE, SNP, C, T, g.chr19:9090293C>T, -, c.1522G>A, c.(1522-1524)Gca>Aca, p.A508T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[608](MUC16, 19, 8994489, 8994489, SILENT, SNP, G, A, g.chr19:8994489G>A, -, c.41403C>T, c.(41401-41403)aaC>aaT, p.N13801N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[609](MUC16, 19, 9006726, 9006726, SILENT, SNP, G, T, g.chr19:9006726G>T, -, c.39522C>A, c.(39520-39522)acC>acA, p.T13174T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[60](MUC16, 19, 9067445, 9067445, SILENT, SNP, G, A, g.chr19:9067445G>A, -, c.20001C>T, c.(19999-20001)gaC>gaT, p.D6667D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[610](MUC16, 19, 9072753, 9072753, MISSENSE, SNP, C, A, g.chr19:9072753C>A, -, c.14693G>T, c.(14692-14694)aGg>aTg, p.R4898M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[611](MUC16, 19, 9087035, 9087035, MISSENSE, SNP, C, A, g.chr19:9087035C>A, -, c.4780G>T, c.(4780-4782)Ggg>Tgg, p.G1594W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[612](MUC16, 19, 9018457, 9018457, NONSENSE, SNP, C, A, g.chr19:9018457C>A, -, c.37717G>T, c.(37717-37719)Gag>Tag, p.E12573*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[613](MUC16, 19, 9064208, 9064208, MISSENSE, SNP, C, A, g.chr19:9064208C>A, -, c.23238G>T, c.(23236-23238)ttG>ttT, p.L7746F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[614](MUC16, 19, 9066676, 9066676, MISSENSE, SNP, C, A, g.chr19:9066676C>A, -, c.20770G>T, c.(20770-20772)Ggg>Tgg, p.G6924W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[615](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[616](MUC16, 19, 9075927, 9075927, MISSENSE, SNP, G, T, g.chr19:9075927G>T, -, c.11519C>A, c.(11518-11520)cCa>cAa, p.P3840Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[617](MUC16, 19, 9082643, 9082643, MISSENSE, SNP, C, A, g.chr19:9082643C>A, -, c.9172G>T, c.(9172-9174)Ggg>Tgg, p.G3058W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[618](MUC16, 19, 8995651, 8995651, SILENT, SNP, C, T, g.chr19:8995651C>T, -, c.41337G>A, c.(41335-41337)tcG>tcA, p.S13779S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[619](MUC16, 19, 9047148, 9047148, MISSENSE, SNP, G, A, g.chr19:9047148G>A, -, c.34483C>T, c.(34483-34485)Cct>Tct, p.P11495S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[61](MUC16, 19, 9088178, 9088178, MISSENSE, SNP, C, T, g.chr19:9088178C>T, -, c.3637G>A, c.(3637-3639)Gga>Aga, p.G1213R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[620](MUC16, 19, 9058517, 9058517, SILENT, SNP, T, C, g.chr19:9058517T>C, -, c.28929A>G, c.(28927-28929)gaA>gaG, p.E9643E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[621](MUC16, 19, 9058519, 9058519, MISSENSE, SNP, C, T, g.chr19:9058519C>T, -, c.28927G>A, c.(28927-28929)Gaa>Aaa, p.E9643K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[622](MUC16, 19, 9088734, 9088734, SILENT, SNP, C, T, g.chr19:9088734C>T, -, c.3081G>A, c.(3079-3081)acG>acA, p.T1027T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[623](MUC16, 19, 9089865, 9089865, SILENT, SNP, G, A, g.chr19:9089865G>A, -, c.1950C>T, c.(1948-1950)tcC>tcT, p.S650S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[624](MUC16, 19, 9089201, 9089201, MISSENSE, SNP, G, A, g.chr19:9089201G>A, -, c.2614C>T, c.(2614-2616)Cca>Tca, p.P872S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[625](MUC16, 19, 9090527, 9090527, MISSENSE, SNP, C, T, g.chr19:9090527C>T, -, c.1288G>A, c.(1288-1290)Gaa>Aaa, p.E430K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[626](MUC16, 19, 8976423, 8976423, SILENT, SNP, C, T, g.chr19:8976423C>T, -, c.42405G>A, c.(42403-42405)aaG>aaA, p.K14135K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[627](MUC16, 19, 9046165, 9046165, SILENT, SNP, G, A, g.chr19:9046165G>A, -, c.35466C>T, c.(35464-35466)ctC>ctT, p.L11822L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[628](MUC16, 19, 9058194, 9058194, MISSENSE, SNP, G, A, g.chr19:9058194G>A, -, c.29252C>T, c.(29251-29253)cCc>cTc, p.P9751L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[629](MUC16, 19, 9063559, 9063559, MISSENSE, SNP, G, A, g.chr19:9063559G>A, -, c.23887C>T, c.(23887-23889)Ccc>Tcc, p.P7963S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[62](MUC16, 19, 9090831, 9090831, SILENT, SNP, A, G, g.chr19:9090831A>G, -, c.984T>C, c.(982-984)ccT>ccC, p.P328P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[630](MUC16, 19, 9063836, 9063836, SILENT, SNP, G, A, g.chr19:9063836G>A, -, c.23610C>T, c.(23608-23610)tcC>tcT, p.S7870S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[631](MUC16, 19, 9067427, 9067427, SILENT, SNP, C, T, g.chr19:9067427C>T, -, c.20019G>A, c.(20017-20019)gaG>gaA, p.E6673E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[632](MUC16, 19, 9068660, 9068660, SILENT, SNP, G, A, g.chr19:9068660G>A, -, c.18786C>T, c.(18784-18786)atC>atT, p.I6262I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[633](MUC16, 19, 9070817, 9070817, SILENT, SNP, G, A, g.chr19:9070817G>A, -, c.16629C>T, c.(16627-16629)atC>atT, p.I5543I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[634](MUC16, 19, 9071595, 9071595, MISSENSE, SNP, A, G, g.chr19:9071595A>G, -, c.15851T>C, c.(15850-15852)cTt>cCt, p.L5284P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[635](MUC16, 19, 9074295, 9074295, MISSENSE, SNP, C, T, g.chr19:9074295C>T, -, c.13151G>A, c.(13150-13152)gGa>gAa, p.G4384E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[636](MUC16, 19, 9082466, 9082466, MISSENSE, SNP, G, A, g.chr19:9082466G>A, -, c.9349C>T, c.(9349-9351)Cca>Tca, p.P3117S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[637](MUC16, 19, 9084598, 9084598, MISSENSE, SNP, G, A, g.chr19:9084598G>A, -, c.7217C>T, c.(7216-7218)tCt>tTt, p.S2406F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[638](MUC16, 19, 9085631, 9085631, MISSENSE, SNP, T, C, g.chr19:9085631T>C, -, c.6184A>G, c.(6184-6186)Aca>Gca, p.T2062A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[639](MUC16, 19, 9089128, 9089128, MISSENSE, SNP, G, A, g.chr19:9089128G>A, -, c.2687C>T, c.(2686-2688)cCa>cTa, p.P896L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[63](MUC16, 19, 9049888, 9049888, SILENT, SNP, C, A, g.chr19:9049888C>A, -, c.31743G>T, c.(31741-31743)ccG>ccT, p.P10581P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[640](MUC16, 19, 9091160, 9091160, MISSENSE, SNP, C, T, g.chr19:9091160C>T, -, c.655G>A, c.(655-657)Gac>Aac, p.D219N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[641](MUC16, 19, 8996361, 8996361, SILENT, SNP, C, A, g.chr19:8996361C>A, -, c.41211G>T, c.(41209-41211)ctG>ctT, p.L13737L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[642](MUC16, 19, 9012882, 9012882, SILENT, SNP, C, A, g.chr19:9012882C>A, -, c.38562G>T, c.(38560-38562)ctG>ctT, p.L12854L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[643](MUC16, 19, 9050121, 9050121, NONSENSE, SNP, C, A, g.chr19:9050121C>A, -, c.31510G>T, c.(31510-31512)Gga>Tga, p.G10504*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[644](MUC16, 19, 9056225, 9056225, SILENT, SNP, C, A, g.chr19:9056225C>A, -, c.31221G>T, c.(31219-31221)ctG>ctT, p.L10407L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[645](MUC16, 19, 9057172, 9057172, MISSENSE, SNP, C, T, g.chr19:9057172C>T, -, c.30274G>A, c.(30274-30276)Gat>Aat, p.D10092N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[646](MUC16, 19, 9057555, 9057555, MISSENSE, SNP, C, A, g.chr19:9057555C>A, -, c.29891G>T, c.(29890-29892)gGg>gTg, p.G9964V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[647](MUC16, 19, 9057890, 9057890, SILENT, SNP, G, T, g.chr19:9057890G>T, -, c.29556C>A, c.(29554-29556)acC>acA, p.T9852T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[648](MUC16, 19, 9058358, 9058358, SILENT, SNP, T, A, g.chr19:9058358T>A, -, c.29088A>T, c.(29086-29088)ggA>ggT, p.G9696G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[649](MUC16, 19, 9061944, 9061944, MISSENSE, SNP, G, A, g.chr19:9061944G>A, -, c.25502C>T, c.(25501-25503)tCt>tTt, p.S8501F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[64](MUC16, 19, 9059377, 9059377, MISSENSE, SNP, G, T, g.chr19:9059377G>T, -, c.28069C>A, c.(28069-28071)Ctc>Atc, p.L9357I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[650](MUC16, 19, 9064106, 9064106, SILENT, SNP, G, T, g.chr19:9064106G>T, -, c.23340C>A, c.(23338-23340)acC>acA, p.T7780T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[651](MUC16, 19, 9067202, 9067202, MISSENSE, SNP, C, A, g.chr19:9067202C>A, -, c.20244G>T, c.(20242-20244)caG>caT, p.Q6748H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[652](MUC16, 19, 9068511, 9068511, MISSENSE, SNP, G, T, g.chr19:9068511G>T, -, c.18935C>A, c.(18934-18936)cCa>cAa, p.P6312Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[653](MUC16, 19, 9075170, 9075170, SILENT, SNP, G, A, g.chr19:9075170G>A, -, c.12276C>T, c.(12274-12276)atC>atT, p.I4092I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[654](MUC16, 19, 9087932, 9087932, MISSENSE, SNP, C, T, g.chr19:9087932C>T, -, c.3883G>A, c.(3883-3885)Gcc>Acc, p.A1295T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.077s |
passed |
| testCreateFuncotations[655](MUC16, 19, 9088008, 9088008, MISSENSE, SNP, C, A, g.chr19:9088008C>A, -, c.3807G>T, c.(3805-3807)atG>atT, p.M1269I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[656](MUC16, 19, 9046044, 9046044, MISSENSE, SNP, G, A, g.chr19:9046044G>A, -, c.35587C>T, c.(35587-35589)Cca>Tca, p.P11863S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[657](MUC16, 19, 9056224, 9056224, MISSENSE, SNP, C, T, g.chr19:9056224C>T, -, c.31222G>A, c.(31222-31224)Gga>Aga, p.G10408R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[658](MUC16, 19, 9068790, 9068790, MISSENSE, SNP, T, C, g.chr19:9068790T>C, -, c.18656A>G, c.(18655-18657)aAc>aGc, p.N6219S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[659](MUC16, 19, 9091259, 9091259, MISSENSE, SNP, G, A, g.chr19:9091259G>A, -, c.556C>T, c.(556-558)Cct>Tct, p.P186S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[65](MUC16, 19, 9068907, 9068907, NONSENSE, SNP, G, T, g.chr19:9068907G>T, -, c.18539C>A, c.(18538-18540)tCa>tAa, p.S6180*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[660](MUC16, 19, 9063944, 9063944, SILENT, SNP, C, T, g.chr19:9063944C>T, -, c.23502G>A, c.(23500-23502)agG>agA, p.R7834R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[661](MUC16, 19, 9070509, 9070509, MISSENSE, SNP, G, A, g.chr19:9070509G>A, -, c.16937C>T, c.(16936-16938)tCc>tTc, p.S5646F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[662](MUC16, 19, 9084874, 9084874, MISSENSE, SNP, C, T, g.chr19:9084874C>T, -, c.6941G>A, c.(6940-6942)gGa>gAa, p.G2314E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[663](MUC16, 19, 8982215, 8982215, SILENT, SNP, G, A, g.chr19:8982215G>A, -, c.42060C>T, c.(42058-42060)acC>acT, p.T14020T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[664](MUC16, 19, 9068901, 9068901, MISSENSE, SNP, C, T, g.chr19:9068901C>T, -, c.18545G>A, c.(18544-18546)gGa>gAa, p.G6182E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[665](MUC16, 19, 9087679, 9087679, MISSENSE, SNP, G, A, g.chr19:9087679G>A, -, c.4136C>T, c.(4135-4137)cCg>cTg, p.P1379L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[666](MUC16, 19, 9049101, 9049101, MISSENSE, SNP, G, A, g.chr19:9049101G>A, -, c.32530C>T, c.(32530-32532)Cat>Tat, p.H10844Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[667](MUC16, 19, 9061597, 9061597, MISSENSE, SNP, G, A, g.chr19:9061597G>A, -, c.25849C>T, c.(25849-25851)Cca>Tca, p.P8617S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[668](MUC16, 19, 9085375, 9085375, MISSENSE, SNP, G, A, g.chr19:9085375G>A, -, c.6440C>T, c.(6439-6441)cCa>cTa, p.P2147L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[669](MUC16, 19, 9089206, 9089206, MISSENSE, SNP, G, A, g.chr19:9089206G>A, -, c.2609C>T, c.(2608-2610)tCg>tTg, p.S870L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[66](MUC16, 19, 9075992, 9075992, SILENT, SNP, G, T, g.chr19:9075992G>T, -, c.11454C>A, c.(11452-11454)ccC>ccA, p.P3818P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[670](MUC16, 19, 9046005, 9046005, MISSENSE, SNP, C, T, g.chr19:9046005C>T, -, c.35626G>A, c.(35626-35628)Ggc>Agc, p.G11876S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[671](MUC16, 19, 9047030, 9047030, MISSENSE, SNP, G, A, g.chr19:9047030G>A, -, c.34601C>T, c.(34600-34602)tCa>tTa, p.S11534L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[672](MUC16, 19, 9050067, 9050067, MISSENSE, SNP, C, T, g.chr19:9050067C>T, -, c.31564G>A, c.(31564-31566)Gaa>Aaa, p.E10522K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[673](MUC16, 19, 9056254, 9056254, MISSENSE, SNP, C, T, g.chr19:9056254C>T, -, c.31192G>A, c.(31192-31194)Gat>Aat, p.D10398N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[674](MUC16, 19, 9058180, 9058180, MISSENSE, SNP, G, A, g.chr19:9058180G>A, -, c.29266C>T, c.(29266-29268)Cct>Tct, p.P9756S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[675](MUC16, 19, 9059369, 9059369, SILENT, SNP, C, T, g.chr19:9059369C>T, -, c.28077G>A, c.(28075-28077)agG>agA, p.R9359R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[676](MUC16, 19, 9060190, 9060190, MISSENSE, SNP, G, A, g.chr19:9060190G>A, -, c.27256C>T, c.(27256-27258)Cct>Tct, p.P9086S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[677](MUC16, 19, 9062066, 9062066, SILENT, SNP, G, A, g.chr19:9062066G>A, -, c.25380C>T, c.(25378-25380)tcC>tcT, p.S8460S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[678](MUC16, 19, 9062157, 9062157, MISSENSE, SNP, G, A, g.chr19:9062157G>A, -, c.25289C>T, c.(25288-25290)gCc>gTc, p.A8430V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[679](MUC16, 19, 9062601, 9062601, MISSENSE, SNP, G, A, g.chr19:9062601G>A, -, c.24845C>T, c.(24844-24846)tCc>tTc, p.S8282F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[67](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[680](MUC16, 19, 9062726, 9062726, SILENT, SNP, C, T, g.chr19:9062726C>T, -, c.24720G>A, c.(24718-24720)gaG>gaA, p.E8240E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[681](MUC16, 19, 9062910, 9062910, MISSENSE, SNP, G, A, g.chr19:9062910G>A, -, c.24536C>T, c.(24535-24537)tCc>tTc, p.S8179F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[682](MUC16, 19, 9063117, 9063117, MISSENSE, SNP, C, T, g.chr19:9063117C>T, -, c.24329G>A, c.(24328-24330)aGa>aAa, p.R8110K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[683](MUC16, 19, 9064409, 9064409, SILENT, SNP, G, A, g.chr19:9064409G>A, -, c.23037C>T, c.(23035-23037)ccC>ccT, p.P7679P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[684](MUC16, 19, 9067148, 9067148, SILENT, SNP, C, T, g.chr19:9067148C>T, -, c.20298G>A, c.(20296-20298)tcG>tcA, p.S6766S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[685](MUC16, 19, 9067300, 9067300, MISSENSE, SNP, C, T, g.chr19:9067300C>T, -, c.20146G>A, c.(20146-20148)Gaa>Aaa, p.E6716K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[686](MUC16, 19, 9071745, 9071745, MISSENSE, SNP, G, A, g.chr19:9071745G>A, -, c.15701C>T, c.(15700-15702)tCc>tTc, p.S5234F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[687](MUC16, 19, 9072286, 9072286, SILENT, SNP, G, A, g.chr19:9072286G>A, -, c.15160C>T, c.(15160-15162)Ctg>Ttg, p.L5054L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[688](MUC16, 19, 9076700, 9076700, SILENT, SNP, G, A, g.chr19:9076700G>A, -, c.10746C>T, c.(10744-10746)acC>acT, p.T3582T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[689](MUC16, 19, 9085622, 9085622, MISSENSE, SNP, G, A, g.chr19:9085622G>A, -, c.6193C>T, c.(6193-6195)Cca>Tca, p.P2065S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[68](MUC16, 19, 9047480, 9047480, MISSENSE, SNP, C, A, g.chr19:9047480C>A, -, c.34151G>T, c.(34150-34152)gGg>gTg, p.G11384V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[690](MUC16, 19, 9087347, 9087347, MISSENSE, SNP, G, A, g.chr19:9087347G>A, -, c.4468C>T, c.(4468-4470)Cca>Tca, p.P1490S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[691](MUC16, 19, 8987295, 8987295, MISSENSE, SNP, G, A, g.chr19:8987295G>A, -, c.41792C>T, c.(41791-41793)aCc>aTc, p.T13931I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[692](MUC16, 19, 8995651, 8995651, SILENT, SNP, C, T, g.chr19:8995651C>T, -, c.41337G>A, c.(41335-41337)tcG>tcA, p.S13779S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[693](MUC16, 19, 8996339, 8996339, MISSENSE, SNP, C, T, g.chr19:8996339C>T, -, c.41233G>A, c.(41233-41235)Gac>Aac, p.D13745N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[694](MUC16, 19, 9014700, 9014700, MISSENSE, SNP, C, T, g.chr19:9014700C>T, -, c.38275G>A, c.(38275-38277)Gag>Aag, p.E12759K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[695](MUC16, 19, 9047769, 9047769, MISSENSE, SNP, C, T, g.chr19:9047769C>T, -, c.33862G>A, c.(33862-33864)Gaa>Aaa, p.E11288K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[696](MUC16, 19, 9048182, 9048182, MISSENSE, SNP, C, T, g.chr19:9048182C>T, -, c.33449G>A, c.(33448-33450)gGa>gAa, p.G11150E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[697](MUC16, 19, 9056181, 9056181, MISSENSE, SNP, C, A, g.chr19:9056181C>A, -, c.31265G>T, c.(31264-31266)cGg>cTg, p.R10422L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[698](MUC16, 19, 9057157, 9057157, MISSENSE, SNP, G, A, g.chr19:9057157G>A, -, c.30289C>T, c.(30289-30291)Cat>Tat, p.H10097Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[699](MUC16, 19, 9057747, 9057747, MISSENSE, SNP, C, T, g.chr19:9057747C>T, -, c.29699G>A, c.(29698-29700)gGa>gAa, p.G9900E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[69](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[6](MUC16, 19, 8959606, 8959606, THREE_PRIME_UTR, SNP, A, G, g.chr19:8959606A>G, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[700](MUC16, 19, 9058027, 9058027, MISSENSE, SNP, G, A, g.chr19:9058027G>A, -, c.29419C>T, c.(29419-29421)Cat>Tat, p.H9807Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[701](MUC16, 19, 9058186, 9058186, MISSENSE, SNP, G, A, g.chr19:9058186G>A, -, c.29260C>T, c.(29260-29262)Cct>Tct, p.P9754S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[702](MUC16, 19, 9058245, 9058245, MISSENSE, SNP, G, A, g.chr19:9058245G>A, -, c.29201C>T, c.(29200-29202)cCt>cTt, p.P9734L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[703](MUC16, 19, 9060853, 9060853, MISSENSE, SNP, G, A, g.chr19:9060853G>A, -, c.26593C>T, c.(26593-26595)Cct>Tct, p.P8865S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[704](MUC16, 19, 9063558, 9063558, MISSENSE, SNP, G, A, g.chr19:9063558G>A, -, c.23888C>T, c.(23887-23889)cCc>cTc, p.P7963L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[705](MUC16, 19, 9066356, 9066356, SILENT, SNP, G, A, g.chr19:9066356G>A, -, c.21090C>T, c.(21088-21090)atC>atT, p.I7030I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[706](MUC16, 19, 9069052, 9069052, MISSENSE, SNP, C, T, g.chr19:9069052C>T, -, c.18394G>A, c.(18394-18396)Gac>Aac, p.D6132N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[707](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[708](MUC16, 19, 9071740, 9071740, MISSENSE, SNP, G, T, g.chr19:9071740G>T, -, c.15706C>A, c.(15706-15708)Cca>Aca, p.P5236T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[709](MUC16, 19, 9071831, 9071831, SILENT, SNP, C, A, g.chr19:9071831C>A, -, c.15615G>T, c.(15613-15615)acG>acT, p.T5205T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[70](MUC16, 19, 9066012, 9066012, MISSENSE, SNP, G, T, g.chr19:9066012G>T, -, c.21434C>A, c.(21433-21435)cCa>cAa, p.P7145Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[710](MUC16, 19, 9072284, 9072284, SILENT, SNP, C, T, g.chr19:9072284C>T, -, c.15162G>A, c.(15160-15162)ctG>ctA, p.L5054L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[711](MUC16, 19, 9074244, 9074244, MISSENSE, SNP, G, A, g.chr19:9074244G>A, -, c.13202C>T, c.(13201-13203)cCa>cTa, p.P4401L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[712](MUC16, 19, 9076530, 9076530, MISSENSE, SNP, C, T, g.chr19:9076530C>T, -, c.10916G>A, c.(10915-10917)gGa>gAa, p.G3639E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[713](MUC16, 19, 9085684, 9085684, MISSENSE, SNP, C, A, g.chr19:9085684C>A, -, c.6131G>T, c.(6130-6132)aGg>aTg, p.R2044M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[714](MUC16, 19, 9086617, 9086617, MISSENSE, SNP, G, A, g.chr19:9086617G>A, -, c.5198C>T, c.(5197-5199)tCc>tTc, p.S1733F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[715](MUC16, 19, 9088509, 9088509, SILENT, SNP, G, A, g.chr19:9088509G>A, -, c.3306C>T, c.(3304-3306)ttC>ttT, p.F1102F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[716](MUC16, 19, 9088886, 9088886, MISSENSE, SNP, C, A, g.chr19:9088886C>A, -, c.2929G>T, c.(2929-2931)Ggg>Tgg, p.G977W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[717](MUC16, 19, 9088984, 9088984, MISSENSE, SNP, C, A, g.chr19:9088984C>A, -, c.2831G>T, c.(2830-2832)gGg>gTg, p.G944V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[718](MUC16, 19, 9089342, 9089342, MISSENSE, SNP, C, A, g.chr19:9089342C>A, -, c.2473G>T, c.(2473-2475)Ggg>Tgg, p.G825W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[719](MUC16, 19, 9000475, 9000475, SILENT, SNP, C, T, g.chr19:9000475C>T, -, c.40509G>A, c.(40507-40509)aaG>aaA, p.K13503K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[71](MUC16, 19, 9067377, 9067377, MISSENSE, SNP, C, A, g.chr19:9067377C>A, -, c.20069G>T, c.(20068-20070)aGg>aTg, p.R6690M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[720](MUC16, 19, 9047652, 9047652, MISSENSE, SNP, C, A, g.chr19:9047652C>A, -, c.33979G>T, c.(33979-33981)Ggg>Tgg, p.G11327W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[721](MUC16, 19, 9059670, 9059670, MISSENSE, SNP, G, T, g.chr19:9059670G>T, -, c.27776C>A, c.(27775-27777)cCc>cAc, p.P9259H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[722](MUC16, 19, 9070823, 9070823, SILENT, SNP, G, T, g.chr19:9070823G>T, -, c.16623C>A, c.(16621-16623)ccC>ccA, p.P5541P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[723](MUC16, 19, 9090729, 9090729, SILENT, SNP, C, T, g.chr19:9090729C>T, -, c.1086G>A, c.(1084-1086)gaG>gaA, p.E362E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[724](MUC16, 19, 9082508, 9082508, MISSENSE, SNP, C, T, g.chr19:9082508C>T, -, c.9307G>A, c.(9307-9309)Gaa>Aaa, p.E3103K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[725](MUC16, 19, 8976641, 8976641, MISSENSE, SNP, G, A, g.chr19:8976641G>A, -, c.42335C>T, c.(42334-42336)cCc>cTc, p.P14112L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[726](MUC16, 19, 8996320, 8996320, SPLICE_SITE, SNP, C, A, g.chr19:8996320C>A, -, c.e61-1G>T, c.e61+1, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[727](MUC16, 19, 9046168, 9046168, SILENT, SNP, A, C, g.chr19:9046168A>C, -, c.35463T>G, c.(35461-35463)tcT>tcG, p.S11821S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[728](MUC16, 19, 9048344, 9048344, MISSENSE, SNP, C, T, g.chr19:9048344C>T, -, c.33287G>A, c.(33286-33288)gGa>gAa, p.G11096E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[729](MUC16, 19, 9049397, 9049397, MISSENSE, SNP, C, A, g.chr19:9049397C>A, -, c.32234G>T, c.(32233-32235)gGg>gTg, p.G10745V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[72](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[730](MUC16, 19, 9049996, 9049996, SILENT, SNP, C, A, g.chr19:9049996C>A, -, c.31635G>T, c.(31633-31635)ctG>ctT, p.L10545L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[731](MUC16, 19, 9050128, 9050128, SILENT, SNP, G, T, g.chr19:9050128G>T, -, c.31503C>A, c.(31501-31503)ccC>ccA, p.P10501P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[732](MUC16, 19, 9059164, 9059164, MISSENSE, SNP, C, T, g.chr19:9059164C>T, -, c.28282G>A, c.(28282-28284)Gaa>Aaa, p.E9428K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[733](MUC16, 19, 9062912, 9062912, SILENT, SNP, A, C, g.chr19:9062912A>C, -, c.24534T>G, c.(24532-24534)acT>acG, p.T8178T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[734](MUC16, 19, 9064631, 9064631, SILENT, SNP, G, T, g.chr19:9064631G>T, -, c.22815C>A, c.(22813-22815)ccC>ccA, p.P7605P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[735](MUC16, 19, 9067341, 9067341, MISSENSE, SNP, G, A, g.chr19:9067341G>A, -, c.20105C>T, c.(20104-20106)cCa>cTa, p.P6702L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.082s |
passed |
| testCreateFuncotations[736](MUC16, 19, 9068288, 9068288, SILENT, SNP, G, A, g.chr19:9068288G>A, -, c.19158C>T, c.(19156-19158)gtC>gtT, p.V6386V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[737](MUC16, 19, 9068704, 9068704, MISSENSE, SNP, G, A, g.chr19:9068704G>A, -, c.18742C>T, c.(18742-18744)Ctt>Ttt, p.L6248F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[738](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[739](MUC16, 19, 9071180, 9071180, SILENT, SNP, G, T, g.chr19:9071180G>T, -, c.16266C>A, c.(16264-16266)acC>acA, p.T5422T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[73](MUC16, 19, 9071237, 9071237, SILENT, SNP, C, A, g.chr19:9071237C>A, -, c.16209G>T, c.(16207-16209)ccG>ccT, p.P5403P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[740](MUC16, 19, 9071268, 9071268, MISSENSE, SNP, G, T, g.chr19:9071268G>T, -, c.16178C>A, c.(16177-16179)cCa>cAa, p.P5393Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[741](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[742](MUC16, 19, 9072482, 9072482, SILENT, SNP, A, T, g.chr19:9072482A>T, -, c.14964T>A, c.(14962-14964)acT>acA, p.T4988T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[743](MUC16, 19, 9074153, 9074153, SILENT, SNP, G, A, g.chr19:9074153G>A, -, c.13293C>T, c.(13291-13293)ctC>ctT, p.L4431L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[744](MUC16, 19, 9077737, 9077737, MISSENSE, SNP, G, A, g.chr19:9077737G>A, -, c.9709C>T, c.(9709-9711)Ccc>Tcc, p.P3237S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[745](MUC16, 19, 9085246, 9085246, MISSENSE, SNP, G, A, g.chr19:9085246G>A, -, c.6569C>T, c.(6568-6570)tCt>tTt, p.S2190F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[746](MUC16, 19, 9085456, 9085456, MISSENSE, SNP, G, A, g.chr19:9085456G>A, -, c.6359C>T, c.(6358-6360)aCt>aTt, p.T2120I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[747](MUC16, 19, 9086274, 9086274, SILENT, SNP, G, A, g.chr19:9086274G>A, -, c.5541C>T, c.(5539-5541)ctC>ctT, p.L1847L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[748](MUC16, 19, 9088061, 9088061, MISSENSE, SNP, G, T, g.chr19:9088061G>T, -, c.3754C>A, c.(3754-3756)Cac>Aac, p.H1252N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[749](MUC16, 19, 9091626, 9091626, SILENT, SNP, G, T, g.chr19:9091626G>T, -, c.189C>A, c.(187-189)acC>acA, p.T63T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[74](MUC16, 19, 9072660, 9072660, MISSENSE, SNP, C, A, g.chr19:9072660C>A, -, c.14786G>T, c.(14785-14787)aGg>aTg, p.R4929M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[750](MUC16, 19, 8994510, 8994510, SILENT, SNP, G, A, g.chr19:8994510G>A, -, c.41382C>T, c.(41380-41382)acC>acT, p.T13794T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[751](MUC16, 19, 9020006, 9020006, SILENT, SNP, T, G, g.chr19:9020006T>G, -, c.37489A>C, c.(37489-37491)Agg>Cgg, p.R12497R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[752](MUC16, 19, 9047708, 9047708, MISSENSE, SNP, G, A, g.chr19:9047708G>A, -, c.33923C>T, c.(33922-33924)tCa>tTa, p.S11308L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[753](MUC16, 19, 9061105, 9061105, MISSENSE, SNP, C, T, g.chr19:9061105C>T, -, c.26341G>A, c.(26341-26343)Gga>Aga, p.G8781R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[754](MUC16, 19, 9063611, 9063611, SILENT, SNP, C, T, g.chr19:9063611C>T, -, c.23835G>A, c.(23833-23835)caG>caA, p.Q7945Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[755](MUC16, 19, 9065098, 9065098, MISSENSE, SNP, T, C, g.chr19:9065098T>C, -, c.22348A>G, c.(22348-22350)Agt>Ggt, p.S7450G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[756](MUC16, 19, 9067599, 9067599, MISSENSE, SNP, G, A, g.chr19:9067599G>A, -, c.19847C>T, c.(19846-19848)cCa>cTa, p.P6616L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[757](MUC16, 19, 9067811, 9067811, SILENT, SNP, G, A, g.chr19:9067811G>A, -, c.19635C>T, c.(19633-19635)ccC>ccT, p.P6545P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[758](MUC16, 19, 9072587, 9072587, SILENT, SNP, G, A, g.chr19:9072587G>A, -, c.14859C>T, c.(14857-14859)tcC>tcT, p.S4953S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[759](MUC16, 19, 9075783, 9075783, MISSENSE, SNP, G, A, g.chr19:9075783G>A, -, c.11663C>T, c.(11662-11664)tCt>tTt, p.S3888F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[75](MUC16, 19, 9073819, 9073819, MISSENSE, SNP, C, A, g.chr19:9073819C>A, -, c.13627G>T, c.(13627-13629)Ggg>Tgg, p.G4543W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[760](MUC16, 19, 9076568, 9076568, SILENT, SNP, G, A, g.chr19:9076568G>A, -, c.10878C>T, c.(10876-10878)gaC>gaT, p.D3626D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[761](MUC16, 19, 9089200, 9089200, MISSENSE, SNP, G, A, g.chr19:9089200G>A, -, c.2615C>T, c.(2614-2616)cCa>cTa, p.P872L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[762](MUC16, 19, 9061891, 9061891, MISSENSE, SNP, A, C, g.chr19:9061891A>C, -, c.25555T>G, c.(25555-25557)Ttt>Gtt, p.F8519V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[763](MUC16, 19, 9064250, 9064250, MISSENSE, SNP, C, A, g.chr19:9064250C>A, -, c.23196G>T, c.(23194-23196)ttG>ttT, p.L7732F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[764](MUC16, 19, 9065698, 9065698, MISSENSE, SNP, C, T, g.chr19:9065698C>T, -, c.21748G>A, c.(21748-21750)Gag>Aag, p.E7250K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[765](MUC16, 19, 9067464, 9067464, MISSENSE, SNP, C, T, g.chr19:9067464C>T, -, c.19982G>A, c.(19981-19983)gGa>gAa, p.G6661E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[766](MUC16, 19, 9084946, 9084946, MISSENSE, SNP, G, A, g.chr19:9084946G>A, -, c.6869C>T, c.(6868-6870)cCt>cTt, p.P2290L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[767](MUC16, 19, 9090790, 9090790, MISSENSE, SNP, C, T, g.chr19:9090790C>T, -, c.1025G>A, c.(1024-1026)aGg>aAg, p.R342K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[768](MUC16, 19, 9000207, 9000207, MISSENSE, SNP, G, A, g.chr19:9000207G>A, -, c.40550C>T, c.(40549-40551)cCt>cTt, p.P13517L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[769](MUC16, 19, 9048855, 9048855, MISSENSE, SNP, C, G, g.chr19:9048855C>G, -, c.32776G>C, c.(32776-32778)Gtt>Ctt, p.V10926L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[76](MUC16, 19, 9087950, 9087950, MISSENSE, SNP, G, T, g.chr19:9087950G>T, -, c.3865C>A, c.(3865-3867)Cac>Aac, p.H1289N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[770](MUC16, 19, 9050072, 9050072, MISSENSE, SNP, G, T, g.chr19:9050072G>T, -, c.31559C>A, c.(31558-31560)cCc>cAc, p.P10520H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[771](MUC16, 19, 9056855, 9056855, SILENT, SNP, C, T, g.chr19:9056855C>T, -, c.30591G>A, c.(30589-30591)caG>caA, p.Q10197Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[772](MUC16, 19, 9060891, 9060891, MISSENSE, SNP, G, A, g.chr19:9060891G>A, -, c.26555C>T, c.(26554-26556)cCt>cTt, p.P8852L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[773](MUC16, 19, 9067222, 9067222, MISSENSE, SNP, G, A, g.chr19:9067222G>A, -, c.20224C>T, c.(20224-20226)Cct>Tct, p.P6742S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[774](MUC16, 19, 9085534, 9085534, MISSENSE, SNP, G, A, g.chr19:9085534G>A, -, c.6281C>T, c.(6280-6282)tCa>tTa, p.S2094L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[775](MUC16, 19, 9009683, 9009683, MISSENSE, SNP, G, T, g.chr19:9009683G>T, -, c.39043C>A, c.(39043-39045)Ctc>Atc, p.L13015I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[776](MUC16, 19, 9025625, 9025625, MISSENSE, SNP, G, A, g.chr19:9025625G>A, -, c.36829C>T, c.(36829-36831)Cct>Tct, p.P12277S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[777](MUC16, 19, 9059322, 9059322, MISSENSE, SNP, C, A, g.chr19:9059322C>A, -, c.28124G>T, c.(28123-28125)gGg>gTg, p.G9375V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[778](MUC16, 19, 9071069, 9071069, SILENT, SNP, C, A, g.chr19:9071069C>A, -, c.16377G>T, c.(16375-16377)ctG>ctT, p.L5459L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[779](MUC16, 19, 9071125, 9071125, MISSENSE, SNP, G, T, g.chr19:9071125G>T, -, c.16321C>A, c.(16321-16323)Cta>Ata, p.L5441I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[77](MUC16, 19, 9061148, 9061148, SILENT, SNP, G, A, g.chr19:9061148G>A, -, c.26298C>T, c.(26296-26298)tcC>tcT, p.S8766S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[780](MUC16, 19, 9072162, 9072162, MISSENSE, SNP, G, T, g.chr19:9072162G>T, -, c.15284C>A, c.(15283-15285)cCa>cAa, p.P5095Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[781](MUC16, 19, 9086925, 9086925, SILENT, SNP, G, T, g.chr19:9086925G>T, -, c.4890C>A, c.(4888-4890)ccC>ccA, p.P1630P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[782](MUC16, 19, 9087026, 9087026, MISSENSE, SNP, C, A, g.chr19:9087026C>A, -, c.4789G>T, c.(4789-4791)Ggg>Tgg, p.G1597W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[783](MUC16, 19, 9088016, 9088016, MISSENSE, SNP, G, T, g.chr19:9088016G>T, -, c.3799C>A, c.(3799-3801)Ctt>Att, p.L1267I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[784](MUC16, 19, 9047238, 9047238, MISSENSE, SNP, T, C, g.chr19:9047238T>C, -, c.34393A>G, c.(34393-34395)Atc>Gtc, p.I11465V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[785](MUC16, 19, 9058153, 9058153, SILENT, SNP, G, A, g.chr19:9058153G>A, -, c.29293C>T, c.(29293-29295)Ctg>Ttg, p.L9765L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[786](MUC16, 19, 9060828, 9060828, MISSENSE, SNP, G, A, g.chr19:9060828G>A, -, c.26618C>T, c.(26617-26619)tCt>tTt, p.S8873F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[787](MUC16, 19, 9067275, 9067275, MISSENSE, SNP, G, A, g.chr19:9067275G>A, -, c.20171C>T, c.(20170-20172)tCc>tTc, p.S6724F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[788](MUC16, 19, 9075800, 9075800, SILENT, SNP, G, A, g.chr19:9075800G>A, -, c.11646C>T, c.(11644-11646)atC>atT, p.I3882I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[789](MUC16, 19, 8969371, 8969371, MISSENSE, SNP, G, T, g.chr19:8969371G>T, -, c.42973C>A, c.(42973-42975)Ctg>Atg, p.L14325M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[78](MUC16, 19, 9069754, 9069754, MISSENSE, SNP, G, A, g.chr19:9069754G>A, -, c.17692C>T, c.(17692-17694)Cca>Tca, p.P5898S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[790](MUC16, 19, 8976814, 8976814, SILENT, SNP, G, A, g.chr19:8976814G>A, -, c.42252C>T, c.(42250-42252)tcC>tcT, p.S14084S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[791](MUC16, 19, 8999411, 8999411, SILENT, SNP, C, T, g.chr19:8999411C>T, -, c.40764G>A, c.(40762-40764)agG>agA, p.R13588R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[792](MUC16, 19, 9056350, 9056350, MISSENSE, SNP, C, A, g.chr19:9056350C>A, -, c.31096G>T, c.(31096-31098)Ggg>Tgg, p.G10366W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[793](MUC16, 19, 9058382, 9058382, SILENT, SNP, C, T, g.chr19:9058382C>T, -, c.29064G>A, c.(29062-29064)ggG>ggA, p.G9688G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[794](MUC16, 19, 9062761, 9062761, MISSENSE, SNP, G, T, g.chr19:9062761G>T, -, c.24685C>A, c.(24685-24687)Cac>Aac, p.H8229N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[795](MUC16, 19, 9064481, 9064481, MISSENSE, SNP, C, A, g.chr19:9064481C>A, -, c.22965G>T, c.(22963-22965)caG>caT, p.Q7655H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[796](MUC16, 19, 9067233, 9067233, MISSENSE, SNP, C, T, g.chr19:9067233C>T, -, c.20213G>A, c.(20212-20214)cGa>cAa, p.R6738Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[797](MUC16, 19, 9068878, 9068878, MISSENSE, SNP, C, T, g.chr19:9068878C>T, -, c.18568G>A, c.(18568-18570)Gat>Aat, p.D6190N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[798](MUC16, 19, 9083313, 9083313, SILENT, SNP, C, T, g.chr19:9083313C>T, -, c.8502G>A, c.(8500-8502)acG>acA, p.T2834T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[799](MUC16, 19, 9088160, 9088160, MISSENSE, SNP, G, A, g.chr19:9088160G>A, -, c.3655C>T, c.(3655-3657)Ccc>Tcc, p.P1219S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[79](MUC16, 19, 9071966, 9071966, SILENT, SNP, C, A, g.chr19:9071966C>A, -, c.15480G>T, c.(15478-15480)gtG>gtT, p.V5160V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[7](MUC16, 19, 8959607, 8959607, THREE_PRIME_UTR, SNP, G, A, g.chr19:8959607G>A, -, null, null, null, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.077s |
passed |
| testCreateFuncotations[800](MUC16, 19, 9091523, 9091523, NONSENSE, SNP, C, A, g.chr19:9091523C>A, -, c.292G>T, c.(292-294)Gag>Tag, p.E98*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[801](MUC16, 19, 9048354, 9048354, MISSENSE, SNP, C, T, g.chr19:9048354C>T, -, c.33277G>A, c.(33277-33279)Ggg>Agg, p.G11093R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[802](MUC16, 19, 9061528, 9061528, MISSENSE, SNP, G, A, g.chr19:9061528G>A, -, c.25918C>T, c.(25918-25920)Cat>Tat, p.H8640Y, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[803](MUC16, 19, 9070177, 9070177, MISSENSE, SNP, C, T, g.chr19:9070177C>T, -, c.17269G>A, c.(17269-17271)Gat>Aat, p.D5757N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[804](MUC16, 19, 9086891, 9086891, MISSENSE, SNP, C, T, g.chr19:9086891C>T, -, c.4924G>A, c.(4924-4926)Gga>Aga, p.G1642R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[805](MUC16, 19, 9090179, 9090179, MISSENSE, SNP, C, T, g.chr19:9090179C>T, -, c.1636G>A, c.(1636-1638)Gag>Aag, p.E546K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.093s |
passed |
| testCreateFuncotations[806](MUC16, 19, 9077268, 9077268, MISSENSE, SNP, C, A, g.chr19:9077268C>A, -, c.10178G>T, c.(10177-10179)tGg>tTg, p.W3393L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[807](MUC16, 19, 9089293, 9089293, MISSENSE, SNP, G, T, g.chr19:9089293G>T, -, c.2522C>A, c.(2521-2523)cCa>cAa, p.P841Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[808](MUC16, 19, 9006648, 9006648, MISSENSE, SNP, C, A, g.chr19:9006648C>A, -, c.39600G>T, c.(39598-39600)caG>caT, p.Q13200H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[809](MUC16, 19, 9017365, 9017365, SILENT, SNP, C, T, g.chr19:9017365C>T, -, c.37959G>A, c.(37957-37959)agG>agA, p.R12653R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[80](MUC16, 19, 8995693, 8995693, SILENT, SNP, C, T, g.chr19:8995693C>T, -, c.41295G>A, c.(41293-41295)ggG>ggA, p.G13765G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[810](MUC16, 19, 9050203, 9050203, SILENT, SNP, G, T, g.chr19:9050203G>T, -, c.31428C>A, c.(31426-31428)acC>acA, p.T10476T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[811](MUC16, 19, 9066824, 9066824, SILENT, SNP, G, T, g.chr19:9066824G>T, -, c.20622C>A, c.(20620-20622)acC>acA, p.T6874T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[812](MUC16, 19, 9088885, 9088885, MISSENSE, SNP, C, A, g.chr19:9088885C>A, -, c.2930G>T, c.(2929-2931)gGg>gTg, p.G977V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[813](MUC16, 19, 9012794, 9012794, MISSENSE, SNP, C, T, g.chr19:9012794C>T, -, c.38650G>A, c.(38650-38652)Gag>Aag, p.E12884K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[814](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[815](MUC16, 19, 9068061, 9068061, MISSENSE, SNP, C, A, g.chr19:9068061C>A, -, c.19385G>T, c.(19384-19386)tGg>tTg, p.W6462L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[816](MUC16, 19, 9070360, 9070360, MISSENSE, SNP, C, T, g.chr19:9070360C>T, -, c.17086G>A, c.(17086-17088)Gag>Aag, p.E5696K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[817](MUC16, 19, 9070678, 9070678, MISSENSE, SNP, G, T, g.chr19:9070678G>T, -, c.16768C>A, c.(16768-16770)Cag>Aag, p.Q5590K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[818](MUC16, 19, 9063451, 9063451, MISSENSE, SNP, G, A, g.chr19:9063451G>A, -, c.23995C>T, c.(23995-23997)Ctt>Ttt, p.L7999F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[819](MUC16, 19, 9083258, 9083258, MISSENSE, SNP, T, C, g.chr19:9083258T>C, -, c.8557A>G, c.(8557-8559)Acc>Gcc, p.T2853A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[81](MUC16, 19, 9000160, 9000160, SILENT, SNP, G, A, g.chr19:9000160G>A, -, c.40597C>T, c.(40597-40599)Ctg>Ttg, p.L13533L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[820](MUC16, 19, 9049457, 9049457, MISSENSE, SNP, G, A, g.chr19:9049457G>A, -, c.32174C>T, c.(32173-32175)cCa>cTa, p.P10725L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[821](MUC16, 19, 9057986, 9057986, SILENT, SNP, G, A, g.chr19:9057986G>A, -, c.29460C>T, c.(29458-29460)tcC>tcT, p.S9820S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[822](MUC16, 19, 9062265, 9062265, MISSENSE, SNP, G, A, g.chr19:9062265G>A, -, c.25181C>T, c.(25180-25182)tCc>tTc, p.S8394F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[823](MUC16, 19, 9063262, 9063262, MISSENSE, SNP, C, A, g.chr19:9063262C>A, -, c.24184G>T, c.(24184-24186)Ggg>Tgg, p.G8062W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[824](MUC16, 19, 9065135, 9065135, MISSENSE, SNP, C, A, g.chr19:9065135C>A, -, c.22311G>T, c.(22309-22311)ttG>ttT, p.L7437F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[825](MUC16, 19, 9065268, 9065268, MISSENSE, SNP, G, A, g.chr19:9065268G>A, -, c.22178C>T, c.(22177-22179)tCt>tTt, p.S7393F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[826](MUC16, 19, 9066502, 9066502, MISSENSE, SNP, C, T, g.chr19:9066502C>T, -, c.20944G>A, c.(20944-20946)Gag>Aag, p.E6982K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[827](MUC16, 19, 9070884, 9070884, MISSENSE, SNP, C, T, g.chr19:9070884C>T, -, c.16562G>A, c.(16561-16563)aGa>aAa, p.R5521K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[828](MUC16, 19, 9074523, 9074523, MISSENSE, SNP, C, A, g.chr19:9074523C>A, -, c.12923G>T, c.(12922-12924)gGa>gTa, p.G4308V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[829](MUC16, 19, 9074994, 9074994, MISSENSE, SNP, G, A, g.chr19:9074994G>A, -, c.12452C>T, c.(12451-12453)cCc>cTc, p.P4151L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.077s |
passed |
| testCreateFuncotations[82](MUC16, 19, 9057771, 9057771, MISSENSE, SNP, G, T, g.chr19:9057771G>T, -, c.29675C>A, c.(29674-29676)aCa>aAa, p.T9892K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[830](MUC16, 19, 9077717, 9077717, SILENT, SNP, T, C, g.chr19:9077717T>C, -, c.9729A>G, c.(9727-9729)gaA>gaG, p.E3243E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[831](MUC16, 19, 9085475, 9085475, NONSENSE, SNP, G, A, g.chr19:9085475G>A, -, c.6340C>T, c.(6340-6342)Cag>Tag, p.Q2114*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[832](MUC16, 19, 9017374, 9017374, SILENT, SNP, G, T, g.chr19:9017374G>T, -, c.37950C>A, c.(37948-37950)acC>acA, p.T12650T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[833](MUC16, 19, 9060089, 9060089, MISSENSE, SNP, C, T, g.chr19:9060089C>T, -, c.27357G>A, c.(27355-27357)atG>atA, p.M9119I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[834](MUC16, 19, 9085016, 9085016, MISSENSE, SNP, G, A, g.chr19:9085016G>A, -, c.6799C>T, c.(6799-6801)Cca>Tca, p.P2267S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[835](MUC16, 19, 9090344, 9090344, MISSENSE, SNP, C, A, g.chr19:9090344C>A, -, c.1471G>T, c.(1471-1473)Ggg>Tgg, p.G491W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[836](MUC16, 19, 9050122, 9050122, MISSENSE, SNP, C, A, g.chr19:9050122C>A, -, c.31509G>T, c.(31507-31509)ttG>ttT, p.L10503F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[837](MUC16, 19, 9059418, 9059418, MISSENSE, SNP, G, A, g.chr19:9059418G>A, -, c.28028C>T, c.(28027-28029)tCa>tTa, p.S9343L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[838](MUC16, 19, 9062966, 9062966, SILENT, SNP, G, A, g.chr19:9062966G>A, -, c.24480C>T, c.(24478-24480)tcC>tcT, p.S8160S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[839](MUC16, 19, 9068026, 9068026, MISSENSE, SNP, G, T, g.chr19:9068026G>T, -, c.19420C>A, c.(19420-19422)Cac>Aac, p.H6474N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[83](MUC16, 19, 9061464, 9061464, MISSENSE, SNP, G, A, g.chr19:9061464G>A, -, c.25982C>T, c.(25981-25983)tCc>tTc, p.S8661F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[840](MUC16, 19, 9007535, 9007535, MISSENSE, SNP, C, G, g.chr19:9007535C>G, -, c.39433G>C, c.(39433-39435)Gtt>Ctt, p.V13145L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[841](MUC16, 19, 9061785, 9061785, MISSENSE, SNP, G, A, g.chr19:9061785G>A, -, c.25661C>T, c.(25660-25662)tCt>tTt, p.S8554F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[842](MUC16, 19, 9076829, 9076829, SILENT, SNP, G, A, g.chr19:9076829G>A, -, c.10617C>T, c.(10615-10617)tcC>tcT, p.S3539S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[843](MUC16, 19, 9085565, 9085565, MISSENSE, SNP, T, C, g.chr19:9085565T>C, -, c.6250A>G, c.(6250-6252)Agt>Ggt, p.S2084G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[844](MUC16, 19, 9086535, 9086535, SILENT, SNP, C, T, g.chr19:9086535C>T, -, c.5280G>A, c.(5278-5280)gtG>gtA, p.V1760V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[845](MUC16, 19, 8993443, 8993443, SILENT, SNP, C, T, g.chr19:8993443C>T, -, c.41646G>A, c.(41644-41646)ctG>ctA, p.L13882L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[846](MUC16, 19, 9024193, 9024193, MISSENSE, SNP, C, T, g.chr19:9024193C>T, -, c.37079G>A, c.(37078-37080)gGg>gAg, p.G12360E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[847](MUC16, 19, 9027222, 9027222, MISSENSE, SNP, G, A, g.chr19:9027222G>A, -, c.36664C>T, c.(36664-36666)Ccc>Tcc, p.P12222S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[848](MUC16, 19, 9046853, 9046853, MISSENSE, SNP, G, A, g.chr19:9046853G>A, -, c.34778C>T, c.(34777-34779)cCc>cTc, p.P11593L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[849](MUC16, 19, 9048058, 9048058, MISSENSE, SNP, C, T, g.chr19:9048058C>T, -, c.33573G>A, c.(33571-33573)atG>atA, p.M11191I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[84](MUC16, 19, 9064451, 9064451, SILENT, SNP, G, A, g.chr19:9064451G>A, -, c.22995C>T, c.(22993-22995)tcC>tcT, p.S7665S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[850](MUC16, 19, 9048675, 9048675, MISSENSE, SNP, C, T, g.chr19:9048675C>T, -, c.32956G>A, c.(32956-32958)Gga>Aga, p.G10986R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[851](MUC16, 19, 9048764, 9048764, MISSENSE, SNP, A, G, g.chr19:9048764A>G, -, c.32867T>C, c.(32866-32868)cTt>cCt, p.L10956P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[852](MUC16, 19, 9048771, 9048771, MISSENSE, SNP, A, G, g.chr19:9048771A>G, -, c.32860T>C, c.(32860-32862)Ttt>Ctt, p.F10954L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[853](MUC16, 19, 9057605, 9057605, MISSENSE, SNP, C, T, g.chr19:9057605C>T, -, c.29841G>A, c.(29839-29841)atG>atA, p.M9947I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[854](MUC16, 19, 9061493, 9061493, SILENT, SNP, C, T, g.chr19:9061493C>T, -, c.25953G>A, c.(25951-25953)ggG>ggA, p.G8651G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[855](MUC16, 19, 9061789, 9061789, MISSENSE, SNP, G, A, g.chr19:9061789G>A, -, c.25657C>T, c.(25657-25659)Ccc>Tcc, p.P8553S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[856](MUC16, 19, 9066175, 9066175, MISSENSE, SNP, C, T, g.chr19:9066175C>T, -, c.21271G>A, c.(21271-21273)Gaa>Aaa, p.E7091K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[857](MUC16, 19, 9068160, 9068160, MISSENSE, SNP, G, A, g.chr19:9068160G>A, -, c.19286C>T, c.(19285-19287)aCc>aTc, p.T6429I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[858](MUC16, 19, 9071105, 9071105, SILENT, SNP, C, T, g.chr19:9071105C>T, -, c.16341G>A, c.(16339-16341)tcG>tcA, p.S5447S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[859](MUC16, 19, 9071673, 9071673, MISSENSE, SNP, G, A, g.chr19:9071673G>A, -, c.15773C>T, c.(15772-15774)tCc>tTc, p.S5258F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[85](MUC16, 19, 9085016, 9085016, MISSENSE, SNP, G, A, g.chr19:9085016G>A, -, c.6799C>T, c.(6799-6801)Cca>Tca, p.P2267S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[860](MUC16, 19, 9073701, 9073701, MISSENSE, SNP, G, A, g.chr19:9073701G>A, -, c.13745C>T, c.(13744-13746)tCa>tTa, p.S4582L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[861](MUC16, 19, 9074883, 9074883, MISSENSE, SNP, G, A, g.chr19:9074883G>A, -, c.12563C>T, c.(12562-12564)cCt>cTt, p.P4188L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[862](MUC16, 19, 9076887, 9076887, MISSENSE, SNP, G, A, g.chr19:9076887G>A, -, c.10559C>T, c.(10558-10560)tCa>tTa, p.S3520L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[863](MUC16, 19, 9088356, 9088356, SILENT, SNP, G, A, g.chr19:9088356G>A, -, c.3459C>T, c.(3457-3459)atC>atT, p.I1153I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[864](MUC16, 19, 9012861, 9012861, SILENT, SNP, G, A, g.chr19:9012861G>A, -, c.38583C>T, c.(38581-38583)ttC>ttT, p.F12861F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[865](MUC16, 19, 9063534, 9063534, MISSENSE, SNP, G, A, g.chr19:9063534G>A, -, c.23912C>T, c.(23911-23913)tCc>tTc, p.S7971F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[866](MUC16, 19, 9047542, 9047542, SILENT, SNP, C, T, g.chr19:9047542C>T, -, c.34089G>A, c.(34087-34089)agG>agA, p.R11363R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[867](MUC16, 19, 9061524, 9061524, MISSENSE, SNP, G, T, g.chr19:9061524G>T, -, c.25922C>A, c.(25921-25923)cCc>cAc, p.P8641H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[868](MUC16, 19, 9084753, 9084753, SILENT, SNP, G, A, g.chr19:9084753G>A, -, c.7062C>T, c.(7060-7062)atC>atT, p.I2354I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[869](MUC16, 19, 9087200, 9087200, MISSENSE, SNP, G, T, g.chr19:9087200G>T, -, c.4615C>A, c.(4615-4617)Cca>Aca, p.P1539T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[86](MUC16, 19, 9086149, 9086149, MISSENSE, SNP, C, T, g.chr19:9086149C>T, -, c.5666G>A, c.(5665-5667)gGa>gAa, p.G1889E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[870](MUC16, 19, 9090527, 9090527, MISSENSE, SNP, C, T, g.chr19:9090527C>T, -, c.1288G>A, c.(1288-1290)Gaa>Aaa, p.E430K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[871](MUC16, 19, 9056721, 9056721, MISSENSE, SNP, C, A, g.chr19:9056721C>A, -, c.30725G>T, c.(30724-30726)gGg>gTg, p.G10242V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[872](MUC16, 19, 9059445, 9059445, MISSENSE, SNP, G, T, g.chr19:9059445G>T, -, c.28001C>A, c.(28000-28002)cCa>cAa, p.P9334Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[873](MUC16, 19, 9065737, 9065737, NONSENSE, SNP, G, A, g.chr19:9065737G>A, -, c.21709C>T, c.(21709-21711)Cag>Tag, p.Q7237*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[874](MUC16, 19, 9070839, 9070839, MISSENSE, SNP, C, A, g.chr19:9070839C>A, -, c.16607G>T, c.(16606-16608)cGg>cTg, p.R5536L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[875](MUC16, 19, 9077420, 9077420, MISSENSE, SNP, C, T, g.chr19:9077420C>T, -, c.10026G>A, c.(10024-10026)atG>atA, p.M3342I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[876](MUC16, 19, 9086816, 9086816, MISSENSE, SNP, C, T, g.chr19:9086816C>T, -, c.4999G>A, c.(4999-5001)Gaa>Aaa, p.E1667K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[877](MUC16, 19, 8994429, 8994429, SILENT, SNP, G, A, g.chr19:8994429G>A, -, c.41463C>T, c.(41461-41463)gtC>gtT, p.V13821V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[878](MUC16, 19, 8997151, 8997151, MISSENSE, SNP, G, A, g.chr19:8997151G>A, -, c.41045C>T, c.(41044-41046)cCt>cTt, p.P13682L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[879](MUC16, 19, 9046048, 9046048, MISSENSE, SNP, C, T, g.chr19:9046048C>T, -, c.35583G>A, c.(35581-35583)atG>atA, p.M11861I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[87](MUC16, 19, 9089699, 9089699, MISSENSE, SNP, G, A, g.chr19:9089699G>A, -, c.2116C>T, c.(2116-2118)Ccc>Tcc, p.P706S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[880](MUC16, 19, 9046526, 9046526, MISSENSE, SNP, G, A, g.chr19:9046526G>A, -, c.35105C>T, c.(35104-35106)tCc>tTc, p.S11702F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[881](MUC16, 19, 9048749, 9048749, MISSENSE, SNP, G, A, g.chr19:9048749G>A, -, c.32882C>T, c.(32881-32883)aCc>aTc, p.T10961I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[882](MUC16, 19, 9067634, 9067634, SILENT, SNP, C, T, g.chr19:9067634C>T, -, c.19812G>A, c.(19810-19812)aaG>aaA, p.K6604K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[883](MUC16, 19, 9069682, 9069682, MISSENSE, SNP, C, T, g.chr19:9069682C>T, -, c.17764G>A, c.(17764-17766)Gaa>Aaa, p.E5922K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[884](MUC16, 19, 9074913, 9074913, MISSENSE, SNP, G, A, g.chr19:9074913G>A, -, c.12533C>T, c.(12532-12534)tCa>tTa, p.S4178L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[885](MUC16, 19, 9077780, 9077780, SILENT, SNP, G, T, g.chr19:9077780G>T, -, c.9666C>A, c.(9664-9666)tcC>tcA, p.S3222S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[886](MUC16, 19, 9082925, 9082925, MISSENSE, SNP, C, T, g.chr19:9082925C>T, -, c.8890G>A, c.(8890-8892)Gga>Aga, p.G2964R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[887](MUC16, 19, 9088751, 9088751, MISSENSE, SNP, G, A, g.chr19:9088751G>A, -, c.3064C>T, c.(3064-3066)Ctc>Ttc, p.L1022F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[888](MUC16, 19, 9090523, 9090523, MISSENSE, SNP, C, T, g.chr19:9090523C>T, -, c.1292G>A, c.(1291-1293)gGa>gAa, p.G431E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[889](MUC16, 19, 9046526, 9046526, MISSENSE, SNP, G, A, g.chr19:9046526G>A, -, c.35105C>T, c.(35104-35106)tCc>tTc, p.S11702F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[88](MUC16, 19, 9011379, 9011379, MISSENSE, SNP, G, T, g.chr19:9011379G>T, -, c.38854C>A, c.(38854-38856)Cat>Aat, p.H12952N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[890](MUC16, 19, 9057584, 9057584, MISSENSE, SNP, C, T, g.chr19:9057584C>T, -, c.29862G>A, c.(29860-29862)atG>atA, p.M9954I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[891](MUC16, 19, 9063943, 9063943, MISSENSE, SNP, C, T, g.chr19:9063943C>T, -, c.23503G>A, c.(23503-23505)Gag>Aag, p.E7835K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[892](MUC16, 19, 9064386, 9064386, MISSENSE, SNP, G, A, g.chr19:9064386G>A, -, c.23060C>T, c.(23059-23061)cCa>cTa, p.P7687L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[893](MUC16, 19, 9065317, 9065317, MISSENSE, SNP, C, T, g.chr19:9065317C>T, -, c.22129G>A, c.(22129-22131)Gat>Aat, p.D7377N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[894](MUC16, 19, 9085985, 9085985, MISSENSE, SNP, C, T, g.chr19:9085985C>T, -, c.5830G>A, c.(5830-5832)Gaa>Aaa, p.E1944K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[895](MUC16, 19, 9089865, 9089865, SILENT, SNP, G, A, g.chr19:9089865G>A, -, c.1950C>T, c.(1948-1950)tcC>tcT, p.S650S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[896](MUC16, 19, 9090467, 9090467, MISSENSE, SNP, C, T, g.chr19:9090467C>T, -, c.1348G>A, c.(1348-1350)Gaa>Aaa, p.E450K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[897](MUC16, 19, 9063015, 9063015, MISSENSE, SNP, C, T, g.chr19:9063015C>T, -, c.24431G>A, c.(24430-24432)gGa>gAa, p.G8144E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[898](MUC16, 19, 9073638, 9073638, MISSENSE, SNP, C, T, g.chr19:9073638C>T, -, c.13808G>A, c.(13807-13809)cGa>cAa, p.R4603Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[899](MUC16, 19, 9087174, 9087174, SILENT, SNP, C, T, g.chr19:9087174C>T, -, c.4641G>A, c.(4639-4641)gtG>gtA, p.V1547V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[89](MUC16, 19, 9014566, 9014566, SILENT, SNP, G, T, g.chr19:9014566G>T, -, c.38409C>A, c.(38407-38409)ccC>ccA, p.P12803P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.078s |
passed |
| testCreateFuncotations[8](MUC16, 19, 8959611, 8959611, MISSENSE, SNP, T, A, g.chr19:8959611T>A, -, c.43521A>T, c.(43519-43521)caA>caT, p.Q14507H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.081s |
passed |
| testCreateFuncotations[900](MUC16, 19, 9088962, 9088962, SILENT, SNP, G, A, g.chr19:9088962G>A, -, c.2853C>T, c.(2851-2853)acC>acT, p.T951T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[901](MUC16, 19, 9069185, 9069185, MISSENSE, SNP, C, T, g.chr19:9069185C>T, -, c.18261G>A, c.(18259-18261)atG>atA, p.M6087I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[902](MUC16, 19, 9074964, 9074964, MISSENSE, SNP, G, A, g.chr19:9074964G>A, -, c.12482C>T, c.(12481-12483)tCc>tTc, p.S4161F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[903](MUC16, 19, 9077248, 9077248, MISSENSE, SNP, G, A, g.chr19:9077248G>A, -, c.10198C>T, c.(10198-10200)Ccc>Tcc, p.P3400S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[904](MUC16, 19, 9077155, 9077155, MISSENSE, SNP, C, T, g.chr19:9077155C>T, -, c.10291G>A, c.(10291-10293)Gat>Aat, p.D3431N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[905](MUC16, 19, 8997424, 8997424, SILENT, SNP, G, A, g.chr19:8997424G>A, -, c.40998C>T, c.(40996-40998)gtC>gtT, p.V13666V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[906](MUC16, 19, 9010671, 9010671, MISSENSE, SNP, G, A, g.chr19:9010671G>A, -, c.38990C>T, c.(38989-38991)cCa>cTa, p.P12997L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[907](MUC16, 19, 9020067, 9020067, SILENT, SNP, C, A, g.chr19:9020067C>A, -, c.37428G>T, c.(37426-37428)ctG>ctT, p.L12476L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[908](MUC16, 19, 9047882, 9047882, MISSENSE, SNP, A, G, g.chr19:9047882A>G, -, c.33749T>C, c.(33748-33750)gTt>gCt, p.V11250A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[909](MUC16, 19, 9059000, 9059000, SILENT, SNP, C, T, g.chr19:9059000C>T, -, c.28446G>A, c.(28444-28446)ttG>ttA, p.L9482L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[90](MUC16, 19, 9047535, 9047535, MISSENSE, SNP, G, T, g.chr19:9047535G>T, -, c.34096C>A, c.(34096-34098)Cct>Act, p.P11366T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[910](MUC16, 19, 9066420, 9066420, MISSENSE, SNP, G, A, g.chr19:9066420G>A, -, c.21026C>T, c.(21025-21027)tCc>tTc, p.S7009F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[911](MUC16, 19, 9077424, 9077424, MISSENSE, SNP, C, T, g.chr19:9077424C>T, -, c.10022G>A, c.(10021-10023)gGa>gAa, p.G3341E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[912](MUC16, 19, 9077700, 9077700, MISSENSE, SNP, G, A, g.chr19:9077700G>A, -, c.9746C>T, c.(9745-9747)tCc>tTc, p.S3249F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[913](MUC16, 19, 9082792, 9082792, MISSENSE, SNP, G, A, g.chr19:9082792G>A, -, c.9023C>T, c.(9022-9024)tCt>tTt, p.S3008F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[914](MUC16, 19, 9089551, 9089551, MISSENSE, SNP, C, A, g.chr19:9089551C>A, -, c.2264G>T, c.(2263-2265)gGg>gTg, p.G755V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[915](MUC16, 19, 9091402, 9091402, MISSENSE, SNP, C, T, g.chr19:9091402C>T, -, c.413G>A, c.(412-414)gGa>gAa, p.G138E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[916](MUC16, 19, 9020060, 9020060, MISSENSE, SNP, C, T, g.chr19:9020060C>T, -, c.37435G>A, c.(37435-37437)Gag>Aag, p.E12479K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[917](MUC16, 19, 9045944, 9045944, MISSENSE, SNP, G, A, g.chr19:9045944G>A, -, c.35687C>T, c.(35686-35688)tCc>tTc, p.S11896F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[918](MUC16, 19, 9050170, 9050170, SILENT, SNP, C, T, g.chr19:9050170C>T, -, c.31461G>A, c.(31459-31461)aaG>aaA, p.K10487K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[919](MUC16, 19, 9089011, 9089011, MISSENSE, SNP, G, A, g.chr19:9089011G>A, -, c.2804C>T, c.(2803-2805)gCt>gTt, p.A935V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[91](MUC16, 19, 9050072, 9050072, MISSENSE, SNP, G, T, g.chr19:9050072G>T, -, c.31559C>A, c.(31558-31560)cCc>cAc, p.P10520H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.083s |
passed |
| testCreateFuncotations[920](MUC16, 19, 8976277, 8976277, MISSENSE, SNP, T, C, g.chr19:8976277T>C, -, c.42551A>G, c.(42550-42552)gAt>gGt, p.D14184G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[921](MUC16, 19, 9028394, 9028394, MISSENSE, SNP, G, A, g.chr19:9028394G>A, -, c.36398C>T, c.(36397-36399)cCa>cTa, p.P12133L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[922](MUC16, 19, 9056722, 9056722, MISSENSE, SNP, C, T, g.chr19:9056722C>T, -, c.30724G>A, c.(30724-30726)Ggg>Agg, p.G10242R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[923](MUC16, 19, 9059214, 9059214, MISSENSE, SNP, G, T, g.chr19:9059214G>T, -, c.28232C>A, c.(28231-28233)cCt>cAt, p.P9411H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[924](MUC16, 19, 9069094, 9069094, MISSENSE, SNP, G, A, g.chr19:9069094G>A, -, c.18352C>T, c.(18352-18354)Cct>Tct, p.P6118S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.090s |
passed |
| testCreateFuncotations[925](MUC16, 19, 9070548, 9070548, MISSENSE, SNP, G, A, g.chr19:9070548G>A, -, c.16898C>T, c.(16897-16899)tCc>tTc, p.S5633F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[926](MUC16, 19, 9083510, 9083510, MISSENSE, SNP, C, T, g.chr19:9083510C>T, -, c.8305G>A, c.(8305-8307)Gag>Aag, p.E2769K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[927](MUC16, 19, 9085683, 9085683, SILENT, SNP, C, T, g.chr19:9085683C>T, -, c.6132G>A, c.(6130-6132)agG>agA, p.R2044R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[928](MUC16, 19, 9063144, 9063144, MISSENSE, SNP, G, A, g.chr19:9063144G>A, -, c.24302C>T, c.(24301-24303)tCa>tTa, p.S8101L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[929](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[92](MUC16, 19, 9059391, 9059391, MISSENSE, SNP, C, T, g.chr19:9059391C>T, -, c.28055G>A, c.(28054-28056)aGa>aAa, p.R9352K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[930](MUC16, 19, 9059806, 9059806, MISSENSE, SNP, T, C, g.chr19:9059806T>C, -, c.27640A>G, c.(27640-27642)Act>Gct, p.T9214A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[931](MUC16, 19, 9060801, 9060801, MISSENSE, SNP, C, A, g.chr19:9060801C>A, -, c.26645G>T, c.(26644-26646)cGg>cTg, p.R8882L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[932](MUC16, 19, 9066158, 9066158, SILENT, SNP, G, A, g.chr19:9066158G>A, -, c.21288C>T, c.(21286-21288)ctC>ctT, p.L7096L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[933](MUC16, 19, 9066699, 9066699, MISSENSE, SNP, G, T, g.chr19:9066699G>T, -, c.20747C>A, c.(20746-20748)cCa>cAa, p.P6916Q, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[934](MUC16, 19, 9074234, 9074234, MISSENSE, SNP, C, A, g.chr19:9074234C>A, -, c.13212G>T, c.(13210-13212)ttG>ttT, p.L4404F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[935](MUC16, 19, 9091402, 9091402, MISSENSE, SNP, C, T, g.chr19:9091402C>T, -, c.413G>A, c.(412-414)gGa>gAa, p.G138E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[936](MUC16, 19, 8976783, 8976783, MISSENSE, SNP, C, T, g.chr19:8976783C>T, -, c.42283G>A, c.(42283-42285)Ggc>Agc, p.G14095S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.094s |
passed |
| testCreateFuncotations[937](MUC16, 19, 8993392, 8993392, SILENT, SNP, C, T, g.chr19:8993392C>T, -, c.41697G>A, c.(41695-41697)agG>agA, p.R13899R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.088s |
passed |
| testCreateFuncotations[938](MUC16, 19, 8999468, 8999468, NONSENSE, SNP, C, T, g.chr19:8999468C>T, -, c.40707G>A, c.(40705-40707)tgG>tgA, p.W13569*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[939](MUC16, 19, 9005651, 9005651, MISSENSE, SNP, C, T, g.chr19:9005651C>T, -, c.39755G>A, c.(39754-39756)aGa>aAa, p.R13252K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[93](MUC16, 19, 9069895, 9069895, MISSENSE, SNP, G, A, g.chr19:9069895G>A, -, c.17551C>T, c.(17551-17553)Cct>Tct, p.P5851S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[940](MUC16, 19, 9059777, 9059777, SILENT, SNP, C, T, g.chr19:9059777C>T, -, c.27669G>A, c.(27667-27669)ctG>ctA, p.L9223L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[941](MUC16, 19, 9064452, 9064452, MISSENSE, SNP, G, A, g.chr19:9064452G>A, -, c.22994C>T, c.(22993-22995)tCc>tTc, p.S7665F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[942](MUC16, 19, 9070263, 9070263, MISSENSE, SNP, G, A, g.chr19:9070263G>A, -, c.17183C>T, c.(17182-17184)tCt>tTt, p.S5728F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[943](MUC16, 19, 9083416, 9083416, MISSENSE, SNP, C, T, g.chr19:9083416C>T, -, c.8399G>A, c.(8398-8400)gGa>gAa, p.G2800E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[944](MUC16, 19, 9083906, 9083906, MISSENSE, SNP, C, T, g.chr19:9083906C>T, -, c.7909G>A, c.(7909-7911)Gga>Aga, p.G2637R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[945](MUC16, 19, 9084779, 9084779, MISSENSE, SNP, C, T, g.chr19:9084779C>T, -, c.7036G>A, c.(7036-7038)Gaa>Aaa, p.E2346K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[946](MUC16, 19, 9009333, 9009333, SPLICE_SITE, SNP, A, G, g.chr19:9009333A>G, -, c.39140T>C, c.(39139-39141)cTt>cCt, p.L13047P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[947](MUC16, 19, 9045834, 9045834, MISSENSE, SNP, C, T, g.chr19:9045834C>T, -, c.35797G>A, c.(35797-35799)Gaa>Aaa, p.E11933K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[948](MUC16, 19, 9056448, 9056448, MISSENSE, SNP, G, A, g.chr19:9056448G>A, -, c.30998C>T, c.(30997-30999)tCc>tTc, p.S10333F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[949](MUC16, 19, 9057356, 9057356, SILENT, SNP, C, T, g.chr19:9057356C>T, -, c.30090G>A, c.(30088-30090)acG>acA, p.T10030T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[94](MUC16, 19, 9084701, 9084701, MISSENSE, SNP, C, T, g.chr19:9084701C>T, -, c.7114G>A, c.(7114-7116)Gat>Aat, p.D2372N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[950](MUC16, 19, 9057556, 9057556, MISSENSE, SNP, C, T, g.chr19:9057556C>T, -, c.29890G>A, c.(29890-29892)Ggg>Agg, p.G9964R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[951](MUC16, 19, 9061857, 9061857, MISSENSE, SNP, C, T, g.chr19:9061857C>T, -, c.25589G>A, c.(25588-25590)gGa>gAa, p.G8530E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[952](MUC16, 19, 9063622, 9063622, MISSENSE, SNP, A, C, g.chr19:9063622A>C, -, c.23824T>G, c.(23824-23826)Tca>Gca, p.S7942A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[953](MUC16, 19, 9071269, 9071269, MISSENSE, SNP, G, A, g.chr19:9071269G>A, -, c.16177C>T, c.(16177-16179)Cca>Tca, p.P5393S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[954](MUC16, 19, 9074894, 9074894, SILENT, SNP, G, A, g.chr19:9074894G>A, -, c.12552C>T, c.(12550-12552)tcC>tcT, p.S4184S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[955](MUC16, 19, 9077502, 9077502, MISSENSE, SNP, G, A, g.chr19:9077502G>A, -, c.9944C>T, c.(9943-9945)tCc>tTc, p.S3315F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[956](MUC16, 19, 9082654, 9082654, MISSENSE, SNP, G, A, g.chr19:9082654G>A, -, c.9161C>T, c.(9160-9162)tCa>tTa, p.S3054L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[957](MUC16, 19, 9083542, 9083542, MISSENSE, SNP, G, A, g.chr19:9083542G>A, -, c.8273C>T, c.(8272-8274)tCc>tTc, p.S2758F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[958](MUC16, 19, 9088564, 9088564, MISSENSE, SNP, G, A, g.chr19:9088564G>A, -, c.3251C>T, c.(3250-3252)cCa>cTa, p.P1084L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[959](MUC16, 19, 9089213, 9089213, MISSENSE, SNP, C, T, g.chr19:9089213C>T, -, c.2602G>A, c.(2602-2604)Gaa>Aaa, p.E868K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[95](MUC16, 19, 9088023, 9088023, SILENT, SNP, G, T, g.chr19:9088023G>T, -, c.3792C>A, c.(3790-3792)acC>acA, p.T1264T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[960](MUC16, 19, 9047336, 9047336, MISSENSE, SNP, G, C, g.chr19:9047336G>C, -, c.34295C>G, c.(34294-34296)aCa>aGa, p.T11432R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.095s |
passed |
| testCreateFuncotations[961](MUC16, 19, 9056795, 9056795, SILENT, SNP, G, A, g.chr19:9056795G>A, -, c.30651C>T, c.(30649-30651)gcC>gcT, p.A10217A, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[962](MUC16, 19, 9062444, 9062444, SILENT, SNP, G, A, g.chr19:9062444G>A, -, c.25002C>T, c.(25000-25002)acC>acT, p.T8334T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.091s |
passed |
| testCreateFuncotations[963](MUC16, 19, 9069683, 9069683, SILENT, SNP, C, T, g.chr19:9069683C>T, -, c.17763G>A, c.(17761-17763)gtG>gtA, p.V5921V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[964](MUC16, 19, 9072540, 9072540, MISSENSE, SNP, G, A, g.chr19:9072540G>A, -, c.14906C>T, c.(14905-14907)tCt>tTt, p.S4969F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[965](MUC16, 19, 9075414, 9075414, MISSENSE, SNP, G, A, g.chr19:9075414G>A, -, c.12032C>T, c.(12031-12033)tCc>tTc, p.S4011F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[966](MUC16, 19, 9077007, 9077007, MISSENSE, SNP, C, T, g.chr19:9077007C>T, -, c.10439G>A, c.(10438-10440)gGa>gAa, p.G3480E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[967](MUC16, 19, 9083474, 9083474, MISSENSE, SNP, C, T, g.chr19:9083474C>T, -, c.8341G>A, c.(8341-8343)Gag>Aag, p.E2781K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[968](MUC16, 19, 9020815, 9020815, MISSENSE, SNP, C, A, g.chr19:9020815C>A, -, c.37287G>T, c.(37285-37287)aaG>aaT, p.K12429N, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[969](MUC16, 19, 9080467, 9080467, SILENT, SNP, C, A, g.chr19:9080467C>A, -, c.9564G>T, c.(9562-9564)acG>acT, p.T3188T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[96](MUC16, 19, 9088055, 9088055, NONSENSE, SNP, C, A, g.chr19:9088055C>A, -, c.3760G>T, c.(3760-3762)Gga>Tga, p.G1254*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[970](MUC16, 19, 9085579, 9085579, MISSENSE, SNP, C, A, g.chr19:9085579C>A, -, c.6236G>T, c.(6235-6237)gGg>gTg, p.G2079V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.089s |
passed |
| testCreateFuncotations[971](MUC16, 19, 9026197, 9026197, MISSENSE, SNP, C, A, g.chr19:9026197C>A, -, c.36789G>T, c.(36787-36789)caG>caT, p.Q12263H, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[972](MUC16, 19, 9059369, 9059369, SILENT, SNP, C, T, g.chr19:9059369C>T, -, c.28077G>A, c.(28075-28077)agG>agA, p.R9359R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[973](MUC16, 19, 9060440, 9060440, SILENT, SNP, G, T, g.chr19:9060440G>T, -, c.27006C>A, c.(27004-27006)ccC>ccA, p.P9002P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[974](MUC16, 19, 9069820, 9069820, MISSENSE, SNP, G, T, g.chr19:9069820G>T, -, c.17626C>A, c.(17626-17628)Ctt>Att, p.L5876I, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[975](MUC16, 19, 9071164, 9071164, MISSENSE, SNP, C, A, g.chr19:9071164C>A, -, c.16282G>T, c.(16282-16284)Ggg>Tgg, p.G5428W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[976](MUC16, 19, 9073396, 9073396, MISSENSE, SNP, C, A, g.chr19:9073396C>A, -, c.14050G>T, c.(14050-14052)Ggg>Tgg, p.G4684W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[977](MUC16, 19, 9010677, 9010677, MISSENSE, SNP, C, T, g.chr19:9010677C>T, -, c.38984G>A, c.(38983-38985)gGg>gAg, p.G12995E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[978](MUC16, 19, 9058282, 9058282, MISSENSE, SNP, C, T, g.chr19:9058282C>T, -, c.29164G>A, c.(29164-29166)Gaa>Aaa, p.E9722K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[979](MUC16, 19, 9060313, 9060313, MISSENSE, SNP, C, T, g.chr19:9060313C>T, -, c.27133G>A, c.(27133-27135)Gga>Aga, p.G9045R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[97](MUC16, 19, 8997475, 8997475, MISSENSE, SNP, C, A, g.chr19:8997475C>A, -, c.40947G>T, c.(40945-40947)gaG>gaT, p.E13649D, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateFuncotations[980](MUC16, 19, 9065879, 9065879, SILENT, SNP, G, A, g.chr19:9065879G>A, -, c.21567C>T, c.(21565-21567)ccC>ccT, p.P7189P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[981](MUC16, 19, 9082421, 9082421, MISSENSE, SNP, C, T, g.chr19:9082421C>T, -, c.9394G>A, c.(9394-9396)Gaa>Aaa, p.E3132K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[982](MUC16, 19, 9082689, 9082689, SILENT, SNP, G, A, g.chr19:9082689G>A, -, c.9126C>T, c.(9124-9126)ttC>ttT, p.F3042F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[983](MUC16, 19, 9006663, 9006663, SILENT, SNP, C, A, g.chr19:9006663C>A, -, c.39585G>T, c.(39583-39585)acG>acT, p.T13195T, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[984](MUC16, 19, 9046066, 9046066, SILENT, SNP, C, T, g.chr19:9046066C>T, -, c.35565G>A, c.(35563-35565)ggG>ggA, p.G11855G, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[985](MUC16, 19, 9049996, 9049996, SILENT, SNP, C, A, g.chr19:9049996C>A, -, c.31635G>T, c.(31633-31635)ctG>ctT, p.L10545L, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[986](MUC16, 19, 9050128, 9050128, SILENT, SNP, G, T, g.chr19:9050128G>T, -, c.31503C>A, c.(31501-31503)ccC>ccA, p.P10501P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[987](MUC16, 19, 9056224, 9056224, NONSENSE, SNP, C, A, g.chr19:9056224C>A, -, c.31222G>T, c.(31222-31224)Gga>Tga, p.G10408*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[988](MUC16, 19, 9057465, 9057465, NONSENSE, SNP, G, T, g.chr19:9057465G>T, -, c.29981C>A, c.(29980-29982)tCa>tAa, p.S9994*, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[989](MUC16, 19, 9058976, 9058976, SILENT, SNP, G, T, g.chr19:9058976G>T, -, c.28470C>A, c.(28468-28470)ccC>ccA, p.P9490P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[98](MUC16, 19, 8999412, 8999412, MISSENSE, SNP, C, A, g.chr19:8999412C>A, -, c.40763G>T, c.(40762-40764)aGg>aTg, p.R13588M, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.079s |
passed |
| testCreateFuncotations[990](MUC16, 19, 9061272, 9061272, MISSENSE, SNP, C, T, g.chr19:9061272C>T, -, c.26174G>A, c.(26173-26175)aGa>aAa, p.R8725K, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[991](MUC16, 19, 9063888, 9063888, MISSENSE, SNP, G, A, g.chr19:9063888G>A, -, c.23558C>T, c.(23557-23559)tCt>tTt, p.S7853F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[992](MUC16, 19, 9065348, 9065348, SILENT, SNP, C, T, g.chr19:9065348C>T, -, c.22098G>A, c.(22096-22098)gaG>gaA, p.E7366E, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[993](MUC16, 19, 9067129, 9067129, MISSENSE, SNP, G, A, g.chr19:9067129G>A, -, c.20317C>T, c.(20317-20319)Cca>Tca, p.P6773S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[994](MUC16, 19, 9068032, 9068032, MISSENSE, SNP, C, T, g.chr19:9068032C>T, -, c.19414G>A, c.(19414-19416)Ggg>Agg, p.G6472R, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[995](MUC16, 19, 9071155, 9071155, MISSENSE, SNP, C, A, g.chr19:9071155C>A, -, c.16291G>T, c.(16291-16293)Ggg>Tgg, p.G5431W, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.087s |
passed |
| testCreateFuncotations[996](MUC16, 19, 9073481, 9073481, SILENT, SNP, G, A, g.chr19:9073481G>A, -, c.13965C>T, c.(13963-13965)ttC>ttT, p.F4655F, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[997](MUC16, 19, 9074039, 9074039, SILENT, SNP, G, T, g.chr19:9074039G>T, -, c.13407C>A, c.(13405-13407)tcC>tcA, p.S4469S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.085s |
passed |
| testCreateFuncotations[998](MUC16, 19, 9075932, 9075932, SILENT, SNP, C, T, g.chr19:9075932C>T, -, c.11514G>A, c.(11512-11514)gtG>gtA, p.V3838V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[999](MUC16, 19, 9077246, 9077246, SILENT, SNP, G, T, g.chr19:9077246G>T, -, c.10200C>A, c.(10198-10200)ccC>ccA, p.P3400P, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.086s |
passed |
| testCreateFuncotations[99](MUC16, 19, 9065925, 9065925, MISSENSE, SNP, G, A, g.chr19:9065925G>A, -, c.21521C>T, c.(21520-21522)gCt>gTt, p.A7174V, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.084s |
passed |
| testCreateFuncotations[9](MUC16, 19, 9002672, 9002672, SPLICE_SITE, SNP, G, A, g.chr19:9002672G>A, -, c.40144C>T, c.(40144-40146)Cct>Tct, p.P13382S, /tmp/funcotatorTmpFolder12840843261914870156/GRCh37.p13.chr19.fasta, htsjdk.tribble.TribbleIndexedFeatureReader@14cf30b3, org.broadinstitute.hellbender.engine.ReferenceFileSource@38159192, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.pc_transcripts.fa, /gatkCloneMountPoint/src/test/resources/large/funcotator/funcotator_dataSources/gencode/hg19/gencode.v19.testVariantSubset.gtf) |
0.080s |
passed |
| testCreateGencodeFuncotationBuilderWithTrivialFieldsPopulated[0]([VC /tmp/funcotatorTmpFolder13669890650518203127/GRCh37.p13.chr3.fasta @ chr3:178921515-178921517 Q. of type=MNP alleles=[GCA*, TTG] attr={} GT=[] filters=, TTG, chr1 ENSEMBL gene 1 3000 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TEST_GENE"; level 3;
chr1 ENSEMBL transcript 1 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1 200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL start_codon 99 101 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL CDS 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL CDS 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL CDS 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 801 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL stop_codon 900 902 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL UTR 1 98 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL UTR 903 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL transcript 1001 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; level 3;
chr1 ENSEMBL exon 1001 1200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL start_codon 1099 1101 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1099 1200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 1201 1400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL CDS 1201 1400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 1401 1600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL CDS 1401 1600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 1601 1800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL CDS 1601 1800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 1801 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL CDS 1801 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL stop_codon 1900 1902 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL UTR 1001 1098 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL UTR 1903 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL transcript 2001 3000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; level 3;
chr1 ENSEMBL exon 2001 2200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 2201 2400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 2401 2600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 2601 2800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 2801 3000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 5; exon_id "TEST_EXON5"; level 3;, chr1 ENSEMBL transcript 1 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1 200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL start_codon 99 101 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL CDS 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL CDS 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL CDS 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 801 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL stop_codon 900 902 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL UTR 1 98 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL UTR 903 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;) |
0.001s |
passed |
| testFivePrimeFlankSorting |
0.101s |
passed |
| testGencodeFuncotationComparatorUnitTest[0](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@43f88150, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[10](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@222ebd21, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@905d6066, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[11](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@115b0bf5, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@aa2d6a20, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[12](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@76e14208, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@be166bba, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[13](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@21440e36, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@d7e67574, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[14](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@75b598a5, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ffa90318, -8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[15](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@1ba84d52, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@19790cd2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[16](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@3e07ccbf, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@68367901, -1) |
0.001s |
passed |
| testGencodeFuncotationComparatorUnitTest[17](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@58fe7e22, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@820682bb, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[18](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@597f9d91, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@4acd18d, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[19](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@4f755506, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@1e7cdb47, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[1](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@30282260, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[20](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@5d685156, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@881963e7, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[21](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@55aadbf2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@881963e7, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[22](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@44c141ce, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, -8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[23](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@642aa8ea, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, 8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[24](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@13668c8b, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[25](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@21b05a8a, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[26](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@605a10fd, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@69143b4f, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[27](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@35eb95d3, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@784333f0, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[28](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@3c320c8b, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@7647a480, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[29](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@240fe338, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9017ae3a, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[2](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@58ed5ed3, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9a6bb8f5, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[30](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@7d1f60cf, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@905d6066, -1) |
0.001s |
passed |
| testGencodeFuncotationComparatorUnitTest[31](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@76b35c38, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@aa2d6a20, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[32](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@af27e00, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b58634c9, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[33](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@3808bdfc, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@cf563e83, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[34](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@46ebfc09, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[35](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@5ceeab0c, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b0f84d41, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[36](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@1e0be005, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@be166bba, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[37](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@36cd58e7, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@d7e67574, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[38](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@3a296643, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ffa90318, -8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[39](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@68950f25, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@19790cd2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[3](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@62f47cac, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a99ab196, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[40](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@7f2d681a, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@68367901, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[41](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@10744fff, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@820682bb, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[42](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@329b4814, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@4acd18d, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[43](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@1419f703, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@1e7cdb47, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[44](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@4e31229f, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@881963e7, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[45](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@31330344, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@881963e7, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[46](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@40c858fc, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, -8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[47](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$BestEffectGencodeFuncotationComparator@49a6503f, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@84d5ee79, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9ea5f833, 8) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[4](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@4a6c3720, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b58634c9, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[5](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@6b5e8b3a, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@cf563e83, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[6](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@171b82ea, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@97284387, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[7](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@564d9ec2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b0f84d41, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[8](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@ac3739d, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c02745e2, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@7647a480, -1) |
0s |
passed |
| testGencodeFuncotationComparatorUnitTest[9](org.broadinstitute.hellbender.tools.funcotator.TranscriptSelectionMode$CanonicalGencodeFuncotationComparator@572c50b6, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9017ae3a, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@a6573c28, 1) |
0s |
passed |
| testGetSortedExonAndStartStopPositions[0](chr1 ENSEMBL transcript 1 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1 200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL start_codon 99 101 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL CDS 201 400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL CDS 401 600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL CDS 601 800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 801 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL stop_codon 900 902 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL UTR 1 98 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL UTR 903 1000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 5; exon_id "TEST_EXON5"; level 3;, [chr1:99-101, chr1:201-400, chr1:401-600, chr1:601-800, chr1:900-902]) |
0s |
passed |
| testGetSortedExonAndStartStopPositions[1](chr1 ENSEMBL transcript 1001 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; level 3;
chr1 ENSEMBL exon 1001 1200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL start_codon 1099 1101 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1099 1200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 1201 1400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL CDS 1201 1400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 1401 1600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL CDS 1401 1600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 1601 1800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL CDS 1601 1800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 1801 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL CDS 1801 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL stop_codon 1900 1902 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;
chr1 ENSEMBL UTR 1001 1098 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL UTR 1903 2000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT2"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT2"; exon_number 5; exon_id "TEST_EXON5"; level 3;, [chr1:1099-1200, chr1:1201-1400, chr1:1401-1600, chr1:1601-1800, chr1:1801-1899, chr1:1900-1902]) |
0s |
passed |
| testGetSortedExonAndStartStopPositions[2](chr1 ENSEMBL transcript 2001 3000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; level 3;
chr1 ENSEMBL exon 2001 2200 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL exon 2201 2400 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 2; exon_id "TEST_EXON2"; level 3;
chr1 ENSEMBL exon 2401 2600 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 3; exon_id "TEST_EXON3"; level 3;
chr1 ENSEMBL exon 2601 2800 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 4; exon_id "TEST_EXON4"; level 3;
chr1 ENSEMBL exon 2801 3000 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT3"; gene_type "protein_coding"; gene_name "TEST_GENE"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT3"; exon_number 5; exon_id "TEST_EXON5"; level 3;, []) |
0s |
passed |
| testGetTranscriptEndPaddingBases[0]([VC TEST_SOURCE @ TEST:5 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, G, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@f58011d, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[10]([VC TEST_SOURCE @ TEST:82 Q. of type=INDEL alleles=[C*, CGAT] attr={} GT=[] filters=, CGAT, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@41ebae0e, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[11]([VC TEST_SOURCE @ TEST:5 Q. of type=INDEL alleles=[A*, AGCGT] attr={} GT=[] filters=, AGCGT, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@222e9ace, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[12]([VC TEST_SOURCE @ TEST:80 Q. of type=INDEL alleles=[C*, CGCTG] attr={} GT=[] filters=, CGCTG, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@1ef8cf89, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[13]([VC TEST_SOURCE @ TEST:82 Q. of type=INDEL alleles=[C*, CGATT] attr={} GT=[] filters=, CGATT, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@1d9e511c, GGGGGCCCC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[14]([VC TEST_SOURCE @ TEST:5-6 Q. of type=INDEL alleles=[AT*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@3b93d874, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[15]([VC TEST_SOURCE @ TEST:80-81 Q. of type=INDEL alleles=[CA*, C] attr={} GT=[] filters=, C, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@1d413e98, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[16]([VC TEST_SOURCE @ TEST:82-83 Q. of type=INDEL alleles=[AA*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@74af4b0, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[17]([VC TEST_SOURCE @ TEST:5-7 Q. of type=INDEL alleles=[ATT*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@bf3aa52, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[18]([VC TEST_SOURCE @ TEST:80-82 Q. of type=INDEL alleles=[CAA*, C] attr={} GT=[] filters=, C, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@1504db11, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[19]([VC TEST_SOURCE @ TEST:82-84 Q. of type=INDEL alleles=[AAA*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@4cc070c2, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[1]([VC TEST_SOURCE @ TEST:100 Q. of type=SNP alleles=[C*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@6cf7de4e, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[20]([VC TEST_SOURCE @ TEST:5-8 Q. of type=INDEL alleles=[ATTT*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@60c8cc46, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[21]([VC TEST_SOURCE @ TEST:80-83 Q. of type=INDEL alleles=[CAAA*, C] attr={} GT=[] filters=, C, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@4a544672, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[22]([VC TEST_SOURCE @ TEST:82-85 Q. of type=INDEL alleles=[AAAA*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@5dd3841, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[23]([VC TEST_SOURCE @ TEST:5-9 Q. of type=INDEL alleles=[ATTTT*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@3e272f0, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[24]([VC TEST_SOURCE @ TEST:80-84 Q. of type=INDEL alleles=[CAAAA*, C] attr={} GT=[] filters=, C, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@47bcaf67, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[25]([VC TEST_SOURCE @ TEST:82-86 Q. of type=INDEL alleles=[AAAAT*, A] attr={} GT=[] filters=, A, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@524032f9, GGGGGCCCC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[2]([VC TEST_SOURCE @ TEST:5 Q. of type=INDEL alleles=[A*, AG] attr={} GT=[] filters=, AG, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@f5b08d4, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[3]([VC TEST_SOURCE @ TEST:80 Q. of type=INDEL alleles=[C*, CG] attr={} GT=[] filters=, CG, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@4746b5d, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[4]([VC TEST_SOURCE @ TEST:82 Q. of type=INDEL alleles=[C*, CG] attr={} GT=[] filters=, CG, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@3656a6cd, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[5]([VC TEST_SOURCE @ TEST:5 Q. of type=INDEL alleles=[A*, AGC] attr={} GT=[] filters=, AGC, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@5967f0ff, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[6]([VC TEST_SOURCE @ TEST:80 Q. of type=INDEL alleles=[C*, CGC] attr={} GT=[] filters=, CGC, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@5be521cd, ) |
0s |
passed |
| testGetTranscriptEndPaddingBases[7]([VC TEST_SOURCE @ TEST:82 Q. of type=INDEL alleles=[C*, CGA] attr={} GT=[] filters=, CGA, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@311683ea, GGGGGC) |
0s |
passed |
| testGetTranscriptEndPaddingBases[8]([VC TEST_SOURCE @ TEST:5 Q. of type=INDEL alleles=[A*, AGCG] attr={} GT=[] filters=, AGCG, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@2fc378cd, ) |
0.001s |
passed |
| testGetTranscriptEndPaddingBases[9]([VC TEST_SOURCE @ TEST:80 Q. of type=INDEL alleles=[C*, CGCT] attr={} GT=[] filters=, CGCT, [test:5-15, test:17-25, test:35-55, test:56-90], org.broadinstitute.hellbender.engine.ReferenceContext@7e84be9b, ) |
0s |
passed |
| testGetVariantClassificationForCodingRegions[0](19, 9073586, 9073586, SNP, G, A, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[1000](19, 9065230, 9065230, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1001](19, 9065265, 9065265, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1002](19, 9065268, 9065268, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1003](19, 9065317, 9065317, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1004](19, 9065348, 9065348, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1005](19, 9065364, 9065364, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1006](19, 9065396, 9065396, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1007](19, 9065398, 9065398, SNP, A, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1008](19, 9065405, 9065405, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1009](19, 9065406, 9065406, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[100](19, 9077142, 9077142, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1010](19, 9065502, 9065502, SNP, G, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1011](19, 9065535, 9065535, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1012](19, 9065577, 9065577, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testGetVariantClassificationForCodingRegions[1013](19, 9065681, 9065681, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1014](19, 9065698, 9065698, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1015](19, 9065720, 9065720, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1016](19, 9065721, 9065721, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1017](19, 9065737, 9065737, SNP, G, A, NONSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1018](19, 9065739, 9065739, SNP, A, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1019](19, 9065788, 9065788, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[101](19, 9077155, 9077155, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1020](19, 9065824, 9065824, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1021](19, 9065829, 9065829, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1022](19, 9065866, 9065866, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1023](19, 9065879, 9065879, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1024](19, 9065888, 9065888, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1025](19, 9065925, 9065925, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1026](19, 9065994, 9065994, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1027](19, 9066038, 9066038, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1028](19, 9066073, 9066073, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1029](19, 9066116, 9066116, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[102](19, 9077159, 9077159, SNP, C, T, NONSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1030](19, 9066121, 9066121, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1031](19, 9066158, 9066158, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1032](19, 9066175, 9066175, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1033](19, 9066182, 9066182, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1034](19, 9066184, 9066184, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1035](19, 9066247, 9066247, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1036](19, 9066331, 9066331, SNP, A, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[1037](19, 9066340, 9066340, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1038](19, 9066356, 9066356, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1039](19, 9066420, 9066420, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[103](19, 9077248, 9077248, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1040](19, 9066457, 9066457, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1041](19, 9066477, 9066477, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1042](19, 9066494, 9066494, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1043](19, 9066502, 9066502, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1044](19, 9066519, 9066519, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[1045](19, 9066520, 9066520, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1046](19, 9066532, 9066532, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1047](19, 9066554, 9066554, SNP, A, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1048](19, 9066570, 9066570, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1049](19, 9066578, 9066578, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[104](19, 9077276, 9077276, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1050](19, 9066587, 9066587, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1051](19, 9066603, 9066603, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1052](19, 9066695, 9066695, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1053](19, 9066772, 9066772, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1054](19, 9067129, 9067129, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1055](19, 9067148, 9067148, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1056](19, 9067149, 9067149, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1057](19, 9067219, 9067219, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1058](19, 9067222, 9067222, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1059](19, 9067224, 9067224, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[105](19, 9077304, 9077304, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1060](19, 9067233, 9067233, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1061](19, 9067238, 9067238, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1062](19, 9067275, 9067275, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1063](19, 9067300, 9067300, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1064](19, 9067326, 9067326, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1065](19, 9067330, 9067330, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1066](19, 9067341, 9067341, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1067](19, 9067342, 9067342, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1068](19, 9067346, 9067346, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1069](19, 9067427, 9067427, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[106](19, 9077349, 9077349, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1070](19, 9067445, 9067445, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1071](19, 9067464, 9067464, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1072](19, 9067484, 9067484, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1073](19, 9067504, 9067504, SNP, C, A, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1074](19, 9067599, 9067599, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1075](19, 9067623, 9067623, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1076](19, 9067633, 9067633, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1077](19, 9067634, 9067634, SNP, C, T, SILENT) |
0.093s |
passed |
| testGetVariantClassificationForCodingRegions[1078](19, 9067679, 9067679, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1079](19, 9067716, 9067716, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[107](19, 9077387, 9077387, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1080](19, 9067811, 9067811, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1081](19, 9067834, 9067834, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1082](19, 9067908, 9067908, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1083](19, 9067930, 9067930, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1084](19, 9068001, 9068001, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1085](19, 9068007, 9068007, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[1086](19, 9068032, 9068032, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1087](19, 9068061, 9068061, SNP, C, T, NONSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1088](19, 9068069, 9068069, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1089](19, 9068117, 9068117, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[108](19, 9077420, 9077420, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1090](19, 9068151, 9068151, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1091](19, 9068160, 9068160, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1092](19, 9068203, 9068203, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1093](19, 9068217, 9068217, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testGetVariantClassificationForCodingRegions[1094](19, 9068223, 9068223, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1095](19, 9068232, 9068232, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1096](19, 9068247, 9068247, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1097](19, 9068288, 9068288, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1098](19, 9068306, 9068306, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1099](19, 9068327, 9068327, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[109](19, 9077424, 9077424, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[10](19, 9074058, 9074058, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1100](19, 9068354, 9068354, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1101](19, 9068396, 9068396, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1102](19, 9068414, 9068414, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1103](19, 9068444, 9068444, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1104](19, 9068484, 9068484, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1105](19, 9068506, 9068506, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1106](19, 9068621, 9068621, SNP, T, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1107](19, 9068660, 9068660, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1108](19, 9068671, 9068671, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1109](19, 9068704, 9068704, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[110](19, 9077469, 9077469, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1110](19, 9068743, 9068743, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1111](19, 9068756, 9068756, SNP, T, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1112](19, 9068790, 9068790, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1113](19, 9068830, 9068830, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1114](19, 9068846, 9068846, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1115](19, 9068878, 9068878, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1116](19, 9068901, 9068901, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1117](19, 9068965, 9068965, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1118](19, 9069045, 9069045, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1119](19, 9069052, 9069052, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[111](19, 9077502, 9077502, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1120](19, 9069094, 9069094, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1121](19, 9069097, 9069097, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1122](19, 9069117, 9069117, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1123](19, 9069180, 9069180, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1124](19, 9069185, 9069185, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1125](19, 9069347, 9069347, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1126](19, 9069352, 9069352, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[1127](19, 9069366, 9069366, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1128](19, 9069395, 9069395, SNP, C, T, SILENT) |
0.087s |
passed |
| testGetVariantClassificationForCodingRegions[1129](19, 9069548, 9069548, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[112](19, 9077510, 9077510, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1130](19, 9069570, 9069570, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1131](19, 9069614, 9069614, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1132](19, 9069622, 9069622, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1133](19, 9069660, 9069660, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1134](19, 9069682, 9069682, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[1135](19, 9069683, 9069683, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1136](19, 9069690, 9069690, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1137](19, 9069754, 9069754, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1138](19, 9069821, 9069821, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1139](19, 9069839, 9069839, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[113](19, 9077538, 9077538, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1140](19, 9069874, 9069874, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1141](19, 9069895, 9069895, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1142](19, 9069926, 9069926, SNP, G, A, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[1143](19, 9069981, 9069981, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1144](19, 9070067, 9070067, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1145](19, 9070090, 9070090, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1146](19, 9070154, 9070154, SNP, A, C, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1147](19, 9070177, 9070177, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1148](19, 9070231, 9070231, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1149](19, 9070251, 9070251, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[114](19, 9077594, 9077594, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1150](19, 9070255, 9070255, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1151](19, 9070263, 9070263, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1152](19, 9070319, 9070319, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1153](19, 9070360, 9070360, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1154](19, 9070394, 9070394, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1155](19, 9070500, 9070500, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1156](19, 9070509, 9070509, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1157](19, 9070515, 9070515, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1158](19, 9070533, 9070533, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1159](19, 9070546, 9070546, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[115](19, 9077652, 9077652, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1160](19, 9070548, 9070548, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1161](19, 9070567, 9070567, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1162](19, 9070578, 9070578, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1163](19, 9070674, 9070674, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1164](19, 9070704, 9070704, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1165](19, 9070705, 9070705, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1166](19, 9070708, 9070708, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1167](19, 9070709, 9070709, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1168](19, 9070778, 9070778, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1169](19, 9070817, 9070817, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[116](19, 9077700, 9077700, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1170](19, 9070835, 9070835, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1171](19, 9070856, 9070856, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1172](19, 9070884, 9070884, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1173](19, 9070955, 9070955, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1174](19, 9070973, 9070973, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1175](19, 9071105, 9071105, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[1176](19, 9071190, 9071190, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1177](19, 9071243, 9071243, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1178](19, 9071252, 9071252, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1179](19, 9071269, 9071269, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[117](19, 9077717, 9077717, SNP, T, C, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1180](19, 9071280, 9071280, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1181](19, 9071324, 9071324, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1182](19, 9071371, 9071371, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1183](19, 9071467, 9071467, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[1184](19, 9071513, 9071513, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1185](19, 9071592, 9071592, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1186](19, 9071595, 9071595, SNP, A, G, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1187](19, 9071650, 9071650, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1188](19, 9071657, 9071657, SNP, T, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1189](19, 9071673, 9071673, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[118](19, 9077720, 9077720, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1190](19, 9071723, 9071723, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1191](19, 9071744, 9071744, SNP, G, A, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[1192](19, 9071745, 9071745, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1193](19, 9071765, 9071765, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1194](19, 9071825, 9071825, SNP, T, G, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1195](19, 9071953, 9071953, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1196](19, 9071966, 9071966, SNP, C, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1197](19, 9072036, 9072036, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1198](19, 9072087, 9072087, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1199](19, 9072091, 9072091, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[119](19, 9077726, 9077726, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[11](19, 9074082, 9074082, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1200](19, 9072100, 9072100, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1201](19, 9072101, 9072101, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1202](19, 9072128, 9072128, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1203](19, 9072184, 9072184, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1204](19, 9072251, 9072251, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1205](19, 9072284, 9072284, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1206](19, 9072286, 9072286, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1207](19, 9072287, 9072287, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1208](19, 9072320, 9072320, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[1209](19, 9072321, 9072321, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[120](19, 9077737, 9077737, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1210](19, 9072326, 9072326, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1211](19, 9072352, 9072352, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1212](19, 9072407, 9072407, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1213](19, 9072414, 9072414, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1214](19, 9072421, 9072421, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1215](19, 9072472, 9072472, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1216](19, 9072482, 9072482, SNP, A, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1217](19, 9072508, 9072508, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1218](19, 9072540, 9072540, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1219](19, 9072587, 9072587, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[121](19, 9077764, 9077764, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[1220](19, 9072618, 9072618, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1221](19, 9072625, 9072625, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1222](19, 9072702, 9072702, SNP, A, G, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1223](19, 9072723, 9072723, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1224](19, 9072763, 9072763, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[1225](19, 9072844, 9072844, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1226](19, 9072845, 9072845, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1227](19, 9073021, 9073021, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1228](19, 9073131, 9073131, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[1229](19, 9073213, 9073213, SNP, G, A, MISSENSE) |
0.076s |
passed |
| testGetVariantClassificationForCodingRegions[122](19, 9077766, 9077766, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1230](19, 9073396, 9073396, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1231](19, 9073481, 9073481, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[1232](19, 9073507, 9073507, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[1233](19, 9073527, 9073527, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[123](19, 9077809, 9077809, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[124](19, 9077817, 9077817, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[125](19, 9077822, 9077822, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[126](19, 9077847, 9077847, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[127](19, 9080501, 9080501, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[128](19, 9080519, 9080519, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[129](19, 9082363, 9082363, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[12](19, 9074139, 9074139, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[130](19, 9082364, 9082364, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[131](19, 9082369, 9082369, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[132](19, 9082412, 9082412, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[133](19, 9082421, 9082421, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[134](19, 9082451, 9082451, SNP, T, C, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[135](19, 9082466, 9082466, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[136](19, 9082490, 9082490, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[137](19, 9082505, 9082505, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testGetVariantClassificationForCodingRegions[138](19, 9082508, 9082508, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[139](19, 9082600, 9082600, SNP, T, C, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[13](19, 9074140, 9074140, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[140](19, 9082626, 9082626, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[141](19, 9082643, 9082643, SNP, C, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[142](19, 9082654, 9082654, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[143](19, 9082689, 9082689, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[144](19, 9082792, 9082792, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[145](19, 9082794, 9082794, SNP, G, A, SILENT) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[146](19, 9082904, 9082904, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[147](19, 9082925, 9082925, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[148](19, 9082977, 9082977, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[149](19, 9082989, 9082989, SNP, C, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[14](19, 9074153, 9074153, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[150](19, 9083027, 9083027, SNP, A, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[151](19, 9083035, 9083035, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[152](19, 9083067, 9083067, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[153](19, 9083076, 9083076, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[154](19, 9083098, 9083098, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[155](19, 9083160, 9083160, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[156](19, 9083224, 9083224, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[157](19, 9083238, 9083238, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[158](19, 9083258, 9083258, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[159](19, 9083269, 9083269, SNP, G, A, MISSENSE) |
0.089s |
passed |
| testGetVariantClassificationForCodingRegions[15](19, 9074177, 9074177, SNP, A, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[160](19, 9083281, 9083281, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[161](19, 9083300, 9083300, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[162](19, 9083313, 9083313, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[163](19, 9083324, 9083324, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[164](19, 9083352, 9083352, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[165](19, 9083416, 9083416, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[166](19, 9083474, 9083474, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[167](19, 9083510, 9083510, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[168](19, 9083532, 9083532, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[169](19, 9083542, 9083542, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[16](19, 9074179, 9074179, SNP, A, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[170](19, 9083554, 9083554, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[171](19, 9083586, 9083586, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[172](19, 9083611, 9083611, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[173](19, 9083630, 9083630, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[174](19, 9083644, 9083644, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[175](19, 9083846, 9083846, SNP, G, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[176](19, 9083864, 9083864, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[177](19, 9083882, 9083882, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[178](19, 9083906, 9083906, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[179](19, 9084051, 9084051, SNP, T, C, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[17](19, 9074184, 9074184, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[180](19, 9084244, 9084244, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[181](19, 9084257, 9084257, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[182](19, 9084263, 9084263, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[183](19, 9084492, 9084492, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[184](19, 9084500, 9084500, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[185](19, 9084523, 9084523, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[186](19, 9084542, 9084542, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[187](19, 9084598, 9084598, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[188](19, 9084604, 9084604, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[189](19, 9084607, 9084607, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[18](19, 9074217, 9074217, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[190](19, 9084638, 9084638, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[191](19, 9084665, 9084665, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[192](19, 9084701, 9084701, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[193](19, 9084753, 9084753, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[194](19, 9084779, 9084779, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[195](19, 9084790, 9084790, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[196](19, 9084874, 9084874, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[197](19, 9084930, 9084930, SNP, C, T, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[198](19, 9084946, 9084946, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[199](19, 9085008, 9085008, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[19](19, 9074222, 9074222, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[1](19, 9073623, 9073623, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[200](19, 9085016, 9085016, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[201](19, 9085017, 9085017, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[202](19, 9085046, 9085046, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[203](19, 9085057, 9085057, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[204](19, 9085237, 9085237, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[205](19, 9085246, 9085246, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[206](19, 9085264, 9085264, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[207](19, 9085301, 9085301, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[208](19, 9085314, 9085314, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[209](19, 9085370, 9085370, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[20](19, 9074244, 9074244, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[210](19, 9085375, 9085375, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[211](19, 9085376, 9085376, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[212](19, 9085397, 9085397, SNP, T, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[213](19, 9085435, 9085435, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[214](19, 9085456, 9085456, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[215](19, 9085475, 9085475, SNP, G, A, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[216](19, 9085498, 9085498, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[217](19, 9085504, 9085504, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[218](19, 9085534, 9085534, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[219](19, 9085544, 9085544, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[21](19, 9074263, 9074263, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[220](19, 9085550, 9085550, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[221](19, 9085554, 9085554, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[222](19, 9085565, 9085565, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[223](19, 9085580, 9085580, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[224](19, 9085586, 9085586, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[225](19, 9085591, 9085591, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[226](19, 9085622, 9085622, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[227](19, 9085631, 9085631, SNP, T, C, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[228](19, 9085683, 9085683, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[229](19, 9085734, 9085734, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[22](19, 9074280, 9074280, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[230](19, 9085769, 9085769, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[231](19, 9085830, 9085830, SNP, A, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[232](19, 9085838, 9085838, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[233](19, 9085846, 9085846, SNP, A, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[234](19, 9085985, 9085985, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[235](19, 9085991, 9085991, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[236](19, 9085995, 9085995, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[237](19, 9085999, 9085999, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[238](19, 9086131, 9086131, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[239](19, 9086149, 9086149, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[23](19, 9074295, 9074295, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[240](19, 9086150, 9086150, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[241](19, 9086175, 9086175, SNP, A, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[242](19, 9086177, 9086177, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[243](19, 9086190, 9086190, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[244](19, 9086274, 9086274, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[245](19, 9086450, 9086450, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[246](19, 9086464, 9086464, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[247](19, 9086521, 9086521, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[248](19, 9086535, 9086535, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[249](19, 9086595, 9086595, SNP, A, G, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[24](19, 9074385, 9074385, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[250](19, 9086617, 9086617, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[251](19, 9086684, 9086684, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[252](19, 9086687, 9086687, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[253](19, 9086692, 9086692, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[254](19, 9086706, 9086706, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[255](19, 9086712, 9086712, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[256](19, 9086722, 9086722, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[257](19, 9086743, 9086743, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[258](19, 9086812, 9086812, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[259](19, 9086816, 9086816, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[25](19, 9074523, 9074523, SNP, C, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[260](19, 9086851, 9086851, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[261](19, 9086857, 9086857, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[262](19, 9086883, 9086883, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[263](19, 9086891, 9086891, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[264](19, 9086960, 9086960, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[265](19, 9087098, 9087098, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[266](19, 9087174, 9087174, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[267](19, 9087251, 9087251, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[268](19, 9087344, 9087344, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[269](19, 9087347, 9087347, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[26](19, 9074565, 9074565, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[270](19, 9087373, 9087373, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[271](19, 9087450, 9087450, SNP, G, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[272](19, 9087495, 9087495, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[273](19, 9087601, 9087601, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[274](19, 9087679, 9087679, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[275](19, 9087697, 9087697, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[276](19, 9087718, 9087718, SNP, C, T, MISSENSE) |
0.107s |
passed |
| testGetVariantClassificationForCodingRegions[277](19, 9087822, 9087822, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[278](19, 9087881, 9087881, SNP, C, T, MISSENSE) |
0.076s |
passed |
| testGetVariantClassificationForCodingRegions[279](19, 9087887, 9087887, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[27](19, 9074606, 9074606, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[280](19, 9087897, 9087897, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[281](19, 9087899, 9087899, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[282](19, 9087904, 9087904, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[283](19, 9087932, 9087932, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[284](19, 9087944, 9087944, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[285](19, 9088081, 9088081, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[286](19, 9088103, 9088103, SNP, T, C, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[287](19, 9088106, 9088106, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[288](19, 9088132, 9088132, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[289](19, 9088159, 9088159, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[28](19, 9074625, 9074625, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[290](19, 9088160, 9088160, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[291](19, 9088177, 9088177, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[292](19, 9088178, 9088178, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[293](19, 9088237, 9088237, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[294](19, 9088300, 9088300, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[295](19, 9088326, 9088326, SNP, G, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[296](19, 9088334, 9088334, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[297](19, 9088356, 9088356, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[298](19, 9088430, 9088430, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[299](19, 9088509, 9088509, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[29](19, 9074665, 9074665, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[2](19, 9073638, 9073638, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[300](19, 9088521, 9088521, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[301](19, 9088564, 9088564, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[302](19, 9088636, 9088636, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[303](19, 9088726, 9088726, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[304](19, 9088734, 9088734, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[305](19, 9088751, 9088751, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[306](19, 9088781, 9088781, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[307](19, 9088812, 9088812, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[308](19, 9088815, 9088815, SNP, T, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[309](19, 9088834, 9088834, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[30](19, 9074696, 9074696, SNP, C, T, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[310](19, 9088839, 9088839, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[311](19, 9088841, 9088841, SNP, G, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[312](19, 9088904, 9088904, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[313](19, 9088939, 9088939, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[314](19, 9088960, 9088960, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[315](19, 9088962, 9088962, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[316](19, 9089000, 9089000, SNP, T, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[317](19, 9089011, 9089011, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[318](19, 9089035, 9089035, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[319](19, 9089082, 9089082, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[31](19, 9074822, 9074822, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[320](19, 9089089, 9089089, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[321](19, 9089115, 9089115, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[322](19, 9089119, 9089119, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[323](19, 9089120, 9089120, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[324](19, 9089128, 9089128, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[325](19, 9089200, 9089200, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[326](19, 9089201, 9089201, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[327](19, 9089206, 9089206, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[328](19, 9089213, 9089213, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[329](19, 9089251, 9089251, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[32](19, 9074844, 9074844, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[330](19, 9089417, 9089417, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[331](19, 9089422, 9089422, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[332](19, 9089446, 9089446, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[333](19, 9089545, 9089545, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[334](19, 9089550, 9089550, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[335](19, 9089551, 9089551, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[336](19, 9089598, 9089598, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[337](19, 9089612, 9089612, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[338](19, 9089642, 9089642, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[339](19, 9089658, 9089658, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[33](19, 9074848, 9074848, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[340](19, 9089680, 9089680, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[341](19, 9089699, 9089699, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[342](19, 9089737, 9089737, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[343](19, 9089741, 9089741, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[344](19, 9089865, 9089865, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[345](19, 9089866, 9089866, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[346](19, 9089878, 9089878, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[347](19, 9089883, 9089883, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[348](19, 9089904, 9089904, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[349](19, 9089917, 9089917, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[34](19, 9074858, 9074858, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[350](19, 9089934, 9089934, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[351](19, 9089940, 9089940, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[352](19, 9089977, 9089977, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[353](19, 9089986, 9089986, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[354](19, 9089999, 9089999, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[355](19, 9090068, 9090068, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[356](19, 9090078, 9090078, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[357](19, 9090102, 9090102, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[358](19, 9090133, 9090133, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[359](19, 9090172, 9090172, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[35](19, 9074867, 9074867, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[360](19, 9090179, 9090179, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[361](19, 9090186, 9090186, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[362](19, 9090293, 9090293, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[363](19, 9090331, 9090331, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[364](19, 9090343, 9090343, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[365](19, 9090379, 9090379, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[366](19, 9090467, 9090467, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[367](19, 9090482, 9090482, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[368](19, 9090497, 9090497, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[369](19, 9090523, 9090523, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[36](19, 9074883, 9074883, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[370](19, 9090527, 9090527, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[371](19, 9090533, 9090533, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[372](19, 9090539, 9090539, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[373](19, 9090556, 9090556, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[374](19, 9090567, 9090567, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[375](19, 9090630, 9090630, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[376](19, 9090653, 9090653, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[377](19, 9090722, 9090722, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[378](19, 9090729, 9090729, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[379](19, 9090748, 9090748, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[37](19, 9074894, 9074894, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[380](19, 9090772, 9090772, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[381](19, 9090789, 9090789, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[382](19, 9090790, 9090790, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[383](19, 9090826, 9090826, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[384](19, 9090831, 9090831, SNP, A, G, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[385](19, 9091052, 9091052, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[386](19, 9091108, 9091108, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[387](19, 9091122, 9091122, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[388](19, 9091124, 9091124, SNP, C, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[389](19, 9091160, 9091160, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[38](19, 9074898, 9074898, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[390](19, 9091236, 9091236, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[391](19, 9091259, 9091259, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[392](19, 9091275, 9091275, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[393](19, 9091388, 9091388, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[394](19, 9091402, 9091402, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[395](19, 9091430, 9091430, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[396](19, 9091441, 9091441, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[397](19, 9091470, 9091470, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[398](19, 9091517, 9091517, SNP, T, C, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[399](19, 9091556, 9091556, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[39](19, 9074907, 9074907, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[3](19, 9073656, 9073656, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[400](19, 9091567, 9091567, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[401](19, 9091577, 9091577, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[402](19, 9091597, 9091597, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[403](19, 9091598, 9091598, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[404](19, 9091626, 9091626, SNP, G, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[405](19, 9091639, 9091639, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[406](19, 9091661, 9091661, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[407](19, 9091671, 9091671, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[408](19, 9091810, 9091810, SNP, A, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[409](19, 9091815, 9091815, SNP, G, A, FIVE_PRIME_UTR) |
0s |
passed |
| testGetVariantClassificationForCodingRegions[40](19, 9074913, 9074913, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[410](19, 8966742, 8966742, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[411](19, 8966751, 8966751, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[412](19, 8969281, 8969281, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[413](19, 8969339, 8969339, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[414](19, 8971824, 8971824, SNP, C, T, SPLICE_SITE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[415](19, 8973575, 8973575, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[416](19, 8974052, 8974052, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[417](19, 8974062, 8974062, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[418](19, 8976277, 8976277, SNP, T, C, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[419](19, 8976423, 8976423, SNP, C, T, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[41](19, 9074964, 9074964, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[420](19, 8976592, 8976592, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[421](19, 8976641, 8976641, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[422](19, 8976750, 8976750, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[423](19, 8976756, 8976756, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[424](19, 8976763, 8976763, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[425](19, 8976783, 8976783, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[426](19, 8976784, 8976784, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[427](19, 8976789, 8976789, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[428](19, 8976814, 8976814, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[429](19, 8979244, 8979244, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[42](19, 9074987, 9074987, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[430](19, 8982210, 8982210, SNP, C, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[431](19, 8982215, 8982215, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[432](19, 8982296, 8982296, SNP, G, A, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[433](19, 8987264, 8987264, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[434](19, 8987295, 8987295, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[435](19, 8987332, 8987332, SNP, C, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[436](19, 8993038, 8993038, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[437](19, 8993392, 8993392, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[438](19, 8993398, 8993398, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[439](19, 8993436, 8993436, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[43](19, 9074991, 9074991, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[440](19, 8993443, 8993443, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[441](19, 8993535, 8993535, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[442](19, 8994157, 8994157, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[443](19, 8994429, 8994429, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[444](19, 8994476, 8994476, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[445](19, 8994489, 8994489, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[446](19, 8994501, 8994501, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[447](19, 8994510, 8994510, SNP, G, A, SILENT) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[448](19, 8994513, 8994513, SNP, G, A, SILENT) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[449](19, 8995651, 8995651, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[44](19, 9074994, 9074994, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[450](19, 8995652, 8995652, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testGetVariantClassificationForCodingRegions[451](19, 8995663, 8995663, SNP, C, T, SILENT) |
0.098s |
passed |
| testGetVariantClassificationForCodingRegions[452](19, 8995693, 8995693, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[453](19, 8995964, 8995964, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[454](19, 8996339, 8996339, SNP, C, T, MISSENSE) |
0.090s |
passed |
| testGetVariantClassificationForCodingRegions[455](19, 8996340, 8996340, SNP, G, A, SILENT) |
0.096s |
passed |
| testGetVariantClassificationForCodingRegions[456](19, 8996474, 8996474, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[457](19, 8996489, 8996489, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[458](19, 8997151, 8997151, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[459](19, 8997177, 8997177, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[45](19, 9075170, 9075170, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[460](19, 8997424, 8997424, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[461](19, 8997440, 8997440, SNP, T, G, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[462](19, 8998736, 8998736, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[463](19, 8999056, 8999056, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[464](19, 8999411, 8999411, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[465](19, 8999468, 8999468, SNP, C, T, NONSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[466](19, 8999484, 8999484, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[467](19, 8999499, 8999499, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[468](19, 8999545, 8999545, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[469](19, 8999551, 8999551, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[46](19, 9075173, 9075173, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[470](19, 8999555, 8999555, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[471](19, 9000160, 9000160, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[472](19, 9000207, 9000207, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[473](19, 9000453, 9000453, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[474](19, 9000458, 9000458, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[475](19, 9000475, 9000475, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[476](19, 9001894, 9001894, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[477](19, 9002184, 9002184, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[478](19, 9002624, 9002624, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[479](19, 9002672, 9002672, SNP, G, A, SPLICE_SITE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[47](19, 9075211, 9075211, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[480](19, 9003586, 9003586, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[481](19, 9003603, 9003603, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[482](19, 9005594, 9005594, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[483](19, 9005597, 9005597, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[484](19, 9005617, 9005617, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[485](19, 9005631, 9005631, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[486](19, 9005651, 9005651, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[487](19, 9006363, 9006363, SNP, A, G, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[488](19, 9006660, 9006660, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[489](19, 9006662, 9006662, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[48](19, 9075252, 9075252, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[490](19, 9007535, 9007535, SNP, C, G, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[491](19, 9007833, 9007833, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[492](19, 9008208, 9008208, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[493](19, 9008345, 9008345, SNP, C, T, SPLICE_SITE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[494](19, 9009273, 9009273, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[495](19, 9009333, 9009333, SNP, A, G, SPLICE_SITE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[496](19, 9009648, 9009648, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[497](19, 9009651, 9009651, SNP, C, T, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[498](19, 9009703, 9009703, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[499](19, 9010664, 9010664, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[49](19, 9075287, 9075287, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[4](19, 9073701, 9073701, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[500](19, 9010671, 9010671, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[501](19, 9010676, 9010676, SNP, C, T, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[502](19, 9010677, 9010677, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[503](19, 9010979, 9010979, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[504](19, 9011382, 9011382, SNP, T, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[505](19, 9011397, 9011397, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[506](19, 9012794, 9012794, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[507](19, 9012839, 9012839, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[508](19, 9012850, 9012850, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[509](19, 9012861, 9012861, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[50](19, 9075298, 9075298, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[510](19, 9013857, 9013857, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[511](19, 9013882, 9013882, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[512](19, 9013898, 9013898, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[513](19, 9014191, 9014191, SNP, C, T, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[514](19, 9014198, 9014198, SNP, G, A, MISSENSE) |
0.097s |
passed |
| testGetVariantClassificationForCodingRegions[515](19, 9014552, 9014552, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[516](19, 9014585, 9014585, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[517](19, 9014622, 9014622, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[518](19, 9014636, 9014636, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[519](19, 9014639, 9014639, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[51](19, 9075336, 9075336, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[520](19, 9014698, 9014698, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[521](19, 9014700, 9014700, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[522](19, 9015342, 9015342, SNP, G, A, MISSENSE) |
0.090s |
passed |
| testGetVariantClassificationForCodingRegions[523](19, 9015627, 9015627, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[524](19, 9016683, 9016683, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[525](19, 9017365, 9017365, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[526](19, 9017418, 9017418, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[527](19, 9017436, 9017436, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[528](19, 9017438, 9017438, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[529](19, 9017450, 9017450, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[52](19, 9075372, 9075372, SNP, T, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[530](19, 9017514, 9017514, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[531](19, 9018453, 9018453, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[532](19, 9018458, 9018458, SNP, A, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[533](19, 9018484, 9018484, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[534](19, 9018509, 9018509, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[535](19, 9018545, 9018545, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[536](19, 9019291, 9019291, SNP, G, A, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[537](19, 9019292, 9019292, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[538](19, 9019313, 9019313, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[539](19, 9019338, 9019338, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[53](19, 9075374, 9075374, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[540](19, 9020006, 9020006, SNP, T, G, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[541](19, 9020060, 9020060, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[542](19, 9020067, 9020067, SNP, C, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[543](19, 9020077, 9020077, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[544](19, 9020092, 9020092, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[545](19, 9020132, 9020132, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[546](19, 9020785, 9020785, SNP, G, A, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[547](19, 9021059, 9021059, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[548](19, 9021104, 9021104, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[549](19, 9024172, 9024172, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[54](19, 9075383, 9075383, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[550](19, 9024180, 9024180, SNP, C, T, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[551](19, 9024193, 9024193, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[552](19, 9024197, 9024197, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[553](19, 9025625, 9025625, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[554](19, 9026203, 9026203, SNP, G, A, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[555](19, 9026227, 9026227, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[556](19, 9026256, 9026256, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[557](19, 9026299, 9026299, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[558](19, 9027222, 9027222, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[559](19, 9027568, 9027568, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[55](19, 9075392, 9075392, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[560](19, 9028320, 9028320, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[561](19, 9028347, 9028347, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[562](19, 9028394, 9028394, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[563](19, 9033650, 9033650, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[564](19, 9038103, 9038103, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[565](19, 9038404, 9038404, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[566](19, 9043442, 9043442, SNP, C, T, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[567](19, 9045590, 9045590, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[568](19, 9045613, 9045613, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[569](19, 9045740, 9045740, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[56](19, 9075414, 9075414, SNP, G, A, MISSENSE) |
0.091s |
passed |
| testGetVariantClassificationForCodingRegions[570](19, 9045750, 9045750, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[571](19, 9045834, 9045834, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[572](19, 9045877, 9045877, SNP, C, T, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[573](19, 9045903, 9045903, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[574](19, 9045922, 9045922, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[575](19, 9045944, 9045944, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[576](19, 9045956, 9045956, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[577](19, 9046005, 9046005, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[578](19, 9046026, 9046026, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[579](19, 9046043, 9046043, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[57](19, 9075484, 9075484, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[580](19, 9046044, 9046044, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[581](19, 9046048, 9046048, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[582](19, 9046062, 9046062, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[583](19, 9046066, 9046066, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[584](19, 9046079, 9046079, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[585](19, 9046165, 9046165, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[586](19, 9046168, 9046168, SNP, A, C, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[587](19, 9046211, 9046211, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[588](19, 9046254, 9046254, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[589](19, 9046272, 9046272, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[58](19, 9075542, 9075542, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[590](19, 9046410, 9046410, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[591](19, 9046505, 9046505, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[592](19, 9046526, 9046526, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[593](19, 9046592, 9046592, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[594](19, 9046600, 9046600, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[595](19, 9046630, 9046630, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[596](19, 9046631, 9046631, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[597](19, 9046738, 9046738, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[598](19, 9046787, 9046787, SNP, C, G, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[599](19, 9046853, 9046853, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[59](19, 9075654, 9075654, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[5](19, 9073721, 9073721, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[600](19, 9046907, 9046907, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[601](19, 9046923, 9046923, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[602](19, 9046965, 9046965, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[603](19, 9046973, 9046973, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[604](19, 9047030, 9047030, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[605](19, 9047124, 9047124, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[606](19, 9047148, 9047148, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[607](19, 9047175, 9047175, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[608](19, 9047181, 9047181, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[609](19, 9047238, 9047238, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[60](19, 9075684, 9075684, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[610](19, 9047336, 9047336, SNP, G, C, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[611](19, 9047352, 9047352, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[612](19, 9047536, 9047536, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[613](19, 9047542, 9047542, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[614](19, 9047571, 9047571, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[615](19, 9047620, 9047620, SNP, C, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[616](19, 9047693, 9047693, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[617](19, 9047708, 9047708, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[618](19, 9047714, 9047714, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[619](19, 9047750, 9047750, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[61](19, 9075687, 9075687, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[620](19, 9047769, 9047769, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[621](19, 9047822, 9047822, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[622](19, 9047843, 9047843, SNP, T, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[623](19, 9047864, 9047864, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[624](19, 9047882, 9047882, SNP, A, G, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[625](19, 9047904, 9047904, SNP, C, T, MISSENSE) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[626](19, 9047932, 9047932, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[627](19, 9047995, 9047995, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[628](19, 9048013, 9048013, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[629](19, 9048053, 9048053, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[62](19, 9075747, 9075747, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[630](19, 9048058, 9048058, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[631](19, 9048071, 9048071, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[632](19, 9048086, 9048086, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[633](19, 9048113, 9048113, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[634](19, 9048182, 9048182, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[635](19, 9048215, 9048215, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[636](19, 9048241, 9048241, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[637](19, 9048259, 9048259, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[638](19, 9048281, 9048281, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[639](19, 9048344, 9048344, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[63](19, 9075775, 9075775, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[640](19, 9048354, 9048354, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[641](19, 9048383, 9048383, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[642](19, 9048429, 9048429, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[643](19, 9048458, 9048458, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[644](19, 9048527, 9048527, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[645](19, 9048589, 9048589, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[646](19, 9048603, 9048603, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[647](19, 9048675, 9048675, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[648](19, 9048722, 9048722, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[649](19, 9048748, 9048748, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[64](19, 9075783, 9075783, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testGetVariantClassificationForCodingRegions[650](19, 9048749, 9048749, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[651](19, 9048764, 9048764, SNP, A, G, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[652](19, 9048771, 9048771, SNP, A, G, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[653](19, 9048826, 9048826, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[654](19, 9048836, 9048836, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[655](19, 9048845, 9048845, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[656](19, 9048855, 9048855, SNP, C, G, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[657](19, 9048867, 9048867, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[658](19, 9048950, 9048950, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[659](19, 9048951, 9048951, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[65](19, 9075800, 9075800, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[660](19, 9049005, 9049005, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[661](19, 9049034, 9049034, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[662](19, 9049043, 9049043, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[663](19, 9049049, 9049049, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[664](19, 9049091, 9049091, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[665](19, 9049101, 9049101, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[666](19, 9049121, 9049121, SNP, C, T, NONSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[667](19, 9049163, 9049163, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[668](19, 9049182, 9049182, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[669](19, 9049196, 9049196, SNP, G, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[66](19, 9075829, 9075829, SNP, C, T, MISSENSE) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[670](19, 9049206, 9049206, SNP, G, A, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[671](19, 9049258, 9049258, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[672](19, 9049298, 9049298, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[673](19, 9049400, 9049400, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[674](19, 9049457, 9049457, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[675](19, 9049484, 9049484, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[676](19, 9049492, 9049492, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[677](19, 9049518, 9049518, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[678](19, 9049537, 9049537, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[679](19, 9049605, 9049605, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[67](19, 9075901, 9075901, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[680](19, 9049612, 9049612, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[681](19, 9049655, 9049655, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[682](19, 9049710, 9049710, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[683](19, 9049823, 9049823, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[684](19, 9049903, 9049903, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[685](19, 9049915, 9049915, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[686](19, 9049941, 9049941, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[687](19, 9049948, 9049948, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[688](19, 9049971, 9049971, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[689](19, 9050038, 9050038, SNP, G, A, SILENT) |
0.087s |
passed |
| testGetVariantClassificationForCodingRegions[68](19, 9075928, 9075928, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[690](19, 9050067, 9050067, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[691](19, 9050129, 9050129, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[692](19, 9050137, 9050137, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[693](19, 9050170, 9050170, SNP, C, T, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[694](19, 9050196, 9050196, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[695](19, 9054252, 9054252, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[696](19, 9054339, 9054339, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[697](19, 9056223, 9056223, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[698](19, 9056224, 9056224, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[699](19, 9056230, 9056230, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[69](19, 9075932, 9075932, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[6](19, 9073747, 9073747, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[700](19, 9056254, 9056254, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[701](19, 9056299, 9056299, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[702](19, 9056341, 9056341, SNP, T, G, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[703](19, 9056344, 9056344, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[704](19, 9056435, 9056435, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[705](19, 9056445, 9056445, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[706](19, 9056448, 9056448, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[707](19, 9056480, 9056480, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[708](19, 9056557, 9056557, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[709](19, 9056563, 9056563, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[70](19, 9075994, 9075994, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[710](19, 9056568, 9056568, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[711](19, 9056574, 9056574, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[712](19, 9056625, 9056625, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[713](19, 9056720, 9056720, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[714](19, 9056722, 9056722, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[715](19, 9056776, 9056776, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[716](19, 9056795, 9056795, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[717](19, 9056805, 9056805, SNP, C, T, NONSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[718](19, 9056850, 9056850, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[719](19, 9056855, 9056855, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[71](19, 9076139, 9076139, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[720](19, 9056878, 9056878, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[721](19, 9056883, 9056883, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[722](19, 9057011, 9057011, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[723](19, 9057032, 9057032, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[724](19, 9057040, 9057040, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[725](19, 9057066, 9057066, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[726](19, 9057093, 9057093, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[727](19, 9057123, 9057123, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[728](19, 9057157, 9057157, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[729](19, 9057172, 9057172, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[72](19, 9076180, 9076180, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[730](19, 9057220, 9057220, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[731](19, 9057290, 9057290, SNP, T, G, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[732](19, 9057356, 9057356, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[733](19, 9057364, 9057364, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[734](19, 9057378, 9057378, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[735](19, 9057400, 9057400, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[736](19, 9057542, 9057542, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[737](19, 9057556, 9057556, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[738](19, 9057582, 9057582, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[739](19, 9057584, 9057584, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[73](19, 9076269, 9076269, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[740](19, 9057605, 9057605, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[741](19, 9057615, 9057615, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[742](19, 9057632, 9057632, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[743](19, 9057713, 9057713, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[744](19, 9057747, 9057747, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[745](19, 9057754, 9057754, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[746](19, 9057771, 9057771, SNP, G, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[747](19, 9057787, 9057787, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[748](19, 9057803, 9057803, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[749](19, 9057805, 9057805, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[74](19, 9076306, 9076306, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[750](19, 9057895, 9057895, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[751](19, 9057898, 9057898, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[752](19, 9057930, 9057930, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[753](19, 9057936, 9057936, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[754](19, 9057962, 9057962, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[755](19, 9057986, 9057986, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[756](19, 9058027, 9058027, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[757](19, 9058034, 9058034, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[758](19, 9058049, 9058049, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[759](19, 9058095, 9058095, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[75](19, 9076384, 9076384, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[760](19, 9058106, 9058106, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[761](19, 9058153, 9058153, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[762](19, 9058180, 9058180, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[763](19, 9058186, 9058186, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[764](19, 9058191, 9058191, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[765](19, 9058194, 9058194, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[766](19, 9058245, 9058245, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[767](19, 9058260, 9058260, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testGetVariantClassificationForCodingRegions[768](19, 9058282, 9058282, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[769](19, 9058283, 9058283, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[76](19, 9076401, 9076401, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[770](19, 9058301, 9058301, SNP, C, T, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[771](19, 9058358, 9058358, SNP, T, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[772](19, 9058359, 9058359, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[773](19, 9058360, 9058360, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[774](19, 9058382, 9058382, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[775](19, 9058517, 9058517, SNP, T, C, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[776](19, 9058519, 9058519, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[777](19, 9058524, 9058524, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[778](19, 9058555, 9058555, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[779](19, 9058581, 9058581, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[77](19, 9076429, 9076429, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[780](19, 9058623, 9058623, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[781](19, 9058656, 9058656, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[782](19, 9058672, 9058672, SNP, G, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[783](19, 9058777, 9058777, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[784](19, 9058876, 9058876, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[785](19, 9058908, 9058908, SNP, T, G, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[786](19, 9058952, 9058952, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[787](19, 9059000, 9059000, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[788](19, 9059043, 9059043, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[789](19, 9059045, 9059045, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[78](19, 9076487, 9076487, SNP, C, T, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[790](19, 9059063, 9059063, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[791](19, 9059164, 9059164, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[792](19, 9059200, 9059200, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[793](19, 9059273, 9059273, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[794](19, 9059329, 9059329, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[795](19, 9059369, 9059369, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[796](19, 9059370, 9059370, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[797](19, 9059391, 9059391, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[798](19, 9059418, 9059418, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[799](19, 9059445, 9059445, SNP, G, T, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[79](19, 9076497, 9076497, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[7](19, 9073897, 9073897, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[800](19, 9059447, 9059447, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[801](19, 9059450, 9059450, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[802](19, 9059483, 9059483, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[803](19, 9059493, 9059493, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[804](19, 9059510, 9059510, SNP, C, G, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[805](19, 9059574, 9059574, SNP, A, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[806](19, 9059611, 9059611, SNP, G, A, NONSENSE) |
0.087s |
passed |
| testGetVariantClassificationForCodingRegions[807](19, 9059723, 9059723, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[808](19, 9059777, 9059777, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[809](19, 9059785, 9059785, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[80](19, 9076527, 9076527, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[810](19, 9059806, 9059806, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[811](19, 9059844, 9059844, SNP, G, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[812](19, 9059860, 9059860, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[813](19, 9060012, 9060012, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[814](19, 9060020, 9060020, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[815](19, 9060067, 9060067, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[816](19, 9060089, 9060089, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[817](19, 9060102, 9060102, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[818](19, 9060131, 9060131, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[819](19, 9060133, 9060133, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[81](19, 9076530, 9076530, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[820](19, 9060158, 9060158, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[821](19, 9060189, 9060189, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[822](19, 9060190, 9060190, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[823](19, 9060196, 9060196, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[824](19, 9060263, 9060263, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[825](19, 9060272, 9060272, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[826](19, 9060306, 9060306, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[827](19, 9060313, 9060313, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[828](19, 9060338, 9060338, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[829](19, 9060353, 9060353, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[82](19, 9076539, 9076539, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[830](19, 9060378, 9060378, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[831](19, 9060381, 9060381, SNP, A, G, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[832](19, 9060392, 9060392, SNP, C, T, SILENT) |
0.086s |
passed |
| testGetVariantClassificationForCodingRegions[833](19, 9060431, 9060431, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[834](19, 9060457, 9060457, SNP, T, C, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[835](19, 9060492, 9060492, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[836](19, 9060569, 9060569, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[837](19, 9060576, 9060576, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[838](19, 9060664, 9060664, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[839](19, 9060710, 9060710, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[83](19, 9076568, 9076568, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[840](19, 9060785, 9060785, SNP, G, A, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[841](19, 9060792, 9060792, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[842](19, 9060828, 9060828, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[843](19, 9060837, 9060837, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[844](19, 9060853, 9060853, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[845](19, 9060859, 9060859, SNP, T, C, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[846](19, 9060867, 9060867, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[847](19, 9060891, 9060891, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[848](19, 9060904, 9060904, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[849](19, 9060909, 9060909, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[84](19, 9076674, 9076674, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[850](19, 9060940, 9060940, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[851](19, 9060965, 9060965, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[852](19, 9061005, 9061005, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[853](19, 9061038, 9061038, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[854](19, 9061059, 9061059, SNP, G, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[855](19, 9061069, 9061069, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[856](19, 9061105, 9061105, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[857](19, 9061109, 9061109, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[858](19, 9061148, 9061148, SNP, G, A, SILENT) |
0.086s |
passed |
| testGetVariantClassificationForCodingRegions[859](19, 9061149, 9061149, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[85](19, 9076695, 9076695, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[860](19, 9061161, 9061161, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[861](19, 9061169, 9061169, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[862](19, 9061180, 9061180, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[863](19, 9061224, 9061224, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[864](19, 9061272, 9061272, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[865](19, 9061307, 9061307, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[866](19, 9061310, 9061310, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[867](19, 9061313, 9061313, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[868](19, 9061397, 9061397, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[869](19, 9061464, 9061464, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[86](19, 9076700, 9076700, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[870](19, 9061470, 9061470, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[871](19, 9061487, 9061487, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[872](19, 9061493, 9061493, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[873](19, 9061525, 9061525, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[874](19, 9061528, 9061528, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[875](19, 9061543, 9061543, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[876](19, 9061597, 9061597, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[877](19, 9061664, 9061664, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[878](19, 9061715, 9061715, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[879](19, 9061767, 9061767, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[87](19, 9076735, 9076735, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[880](19, 9061785, 9061785, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[881](19, 9061789, 9061789, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[882](19, 9061796, 9061796, SNP, C, T, SILENT) |
0.076s |
passed |
| testGetVariantClassificationForCodingRegions[883](19, 9061851, 9061851, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[884](19, 9061857, 9061857, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[885](19, 9061891, 9061891, SNP, A, C, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[886](19, 9061944, 9061944, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[887](19, 9061972, 9061972, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[888](19, 9061992, 9061992, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[889](19, 9062015, 9062015, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[88](19, 9076809, 9076809, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[890](19, 9062025, 9062025, SNP, G, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[891](19, 9062027, 9062027, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[892](19, 9062037, 9062037, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[893](19, 9062045, 9062045, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[894](19, 9062055, 9062055, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[895](19, 9062066, 9062066, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[896](19, 9062075, 9062075, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[897](19, 9062082, 9062082, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[898](19, 9062146, 9062146, SNP, T, G, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[899](19, 9062157, 9062157, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[89](19, 9076820, 9076820, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[8](19, 9073956, 9073956, SNP, A, C, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[900](19, 9062169, 9062169, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[901](19, 9062188, 9062188, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[902](19, 9062265, 9062265, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[903](19, 9062392, 9062392, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[904](19, 9062444, 9062444, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[905](19, 9062445, 9062445, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[906](19, 9062451, 9062451, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[907](19, 9062500, 9062500, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[908](19, 9062517, 9062517, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[909](19, 9062543, 9062543, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[90](19, 9076829, 9076829, SNP, G, A, SILENT) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[910](19, 9062546, 9062546, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[911](19, 9062579, 9062579, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[912](19, 9062585, 9062585, SNP, C, T, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[913](19, 9062601, 9062601, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[914](19, 9062673, 9062673, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[915](19, 9062685, 9062685, SNP, C, T, NONSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[916](19, 9062726, 9062726, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[917](19, 9062771, 9062771, SNP, C, T, NONSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[918](19, 9062833, 9062833, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[919](19, 9062910, 9062910, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[91](19, 9076839, 9076839, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[920](19, 9062912, 9062912, SNP, A, C, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[921](19, 9062966, 9062966, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[922](19, 9062981, 9062981, SNP, C, T, SILENT) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[923](19, 9062982, 9062982, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[924](19, 9063015, 9063015, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[925](19, 9063016, 9063016, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[926](19, 9063117, 9063117, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[927](19, 9063144, 9063144, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[928](19, 9063190, 9063190, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[929](19, 9063255, 9063255, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[92](19, 9076840, 9076840, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[930](19, 9063268, 9063268, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[931](19, 9063345, 9063345, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[932](19, 9063387, 9063387, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[933](19, 9063434, 9063434, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[934](19, 9063438, 9063438, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[935](19, 9063451, 9063451, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[936](19, 9063486, 9063486, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[937](19, 9063534, 9063534, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[938](19, 9063547, 9063547, SNP, T, C, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[939](19, 9063558, 9063558, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[93](19, 9076887, 9076887, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[940](19, 9063558, 9063558, SNP, G, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[941](19, 9063559, 9063559, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[942](19, 9063570, 9063570, SNP, C, T, NONSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[943](19, 9063573, 9063573, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[944](19, 9063593, 9063593, SNP, C, T, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[945](19, 9063611, 9063611, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[946](19, 9063622, 9063622, SNP, A, C, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[947](19, 9063773, 9063773, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[948](19, 9063802, 9063802, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[949](19, 9063832, 9063832, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[94](19, 9076958, 9076958, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[950](19, 9063836, 9063836, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[951](19, 9063850, 9063850, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[952](19, 9063888, 9063888, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[953](19, 9063915, 9063915, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[954](19, 9063923, 9063923, SNP, C, T, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[955](19, 9063943, 9063943, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[956](19, 9063944, 9063944, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[957](19, 9063956, 9063956, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[958](19, 9063963, 9063963, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[959](19, 9063965, 9063965, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[95](19, 9077007, 9077007, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[960](19, 9063986, 9063986, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[961](19, 9064001, 9064001, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[962](19, 9064199, 9064199, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[963](19, 9064221, 9064221, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[964](19, 9064290, 9064290, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[965](19, 9064299, 9064299, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[966](19, 9064305, 9064305, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[967](19, 9064313, 9064313, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[968](19, 9064338, 9064338, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[969](19, 9064344, 9064344, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[96](19, 9077049, 9077049, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[970](19, 9064379, 9064379, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[971](19, 9064386, 9064386, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[972](19, 9064399, 9064399, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[973](19, 9064403, 9064403, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[974](19, 9064409, 9064409, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[975](19, 9064411, 9064411, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[976](19, 9064451, 9064451, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[977](19, 9064452, 9064452, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[978](19, 9064474, 9064474, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[979](19, 9064480, 9064480, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[97](19, 9077090, 9077090, SNP, G, A, SILENT) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[980](19, 9064483, 9064483, SNP, G, A, NONSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[981](19, 9064549, 9064549, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[982](19, 9064566, 9064566, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[983](19, 9064619, 9064619, SNP, G, A, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[984](19, 9064628, 9064628, SNP, C, T, SILENT) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[985](19, 9064631, 9064631, SNP, G, A, SILENT) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[986](19, 9064667, 9064667, SNP, G, A, SILENT) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[987](19, 9064689, 9064689, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testGetVariantClassificationForCodingRegions[988](19, 9064721, 9064721, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[989](19, 9064755, 9064755, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[98](19, 9077116, 9077116, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testGetVariantClassificationForCodingRegions[990](19, 9064771, 9064771, SNP, C, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[991](19, 9064799, 9064799, SNP, G, A, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[992](19, 9064856, 9064856, SNP, C, T, SILENT) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[993](19, 9064917, 9064917, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testGetVariantClassificationForCodingRegions[994](19, 9065029, 9065029, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[995](19, 9065032, 9065032, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testGetVariantClassificationForCodingRegions[996](19, 9065041, 9065041, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testGetVariantClassificationForCodingRegions[997](19, 9065080, 9065080, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[998](19, 9065098, 9065098, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testGetVariantClassificationForCodingRegions[999](19, 9065219, 9065219, SNP, G, A, SILENT) |
0.082s |
passed |
| testGetVariantClassificationForCodingRegions[99](19, 9077118, 9077118, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testGetVariantClassificationForCodingRegions[9](19, 9073985, 9073985, SNP, G, A, SILENT) |
0.078s |
passed |
| testIs5PrimeUtr[0](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 666 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 667 1332 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1333 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2664 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, false) |
0s |
passed |
| testIs5PrimeUtr[1](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 999 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL start_codon 500 502 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1000 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2997 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, false) |
0s |
passed |
| testIs5PrimeUtr[2](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 999 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL start_codon 1498 1500 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1000 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2997 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, true) |
0.001s |
passed |
| testIs5PrimeUtr[3](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . - . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 666 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 667 1332 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1333 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2664 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, false) |
0s |
passed |
| testIs5PrimeUtr[4](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . - . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 999 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL start_codon 500 502 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1000 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2997 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, true) |
0s |
passed |
| testIs5PrimeUtr[5](T ENSEMBL UTR 750 1250 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, T ENSEMBL transcript 1 2000 . - . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1 999 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL start_codon 1498 1500 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1000 1998 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;
T ENSEMBL exon 1999 2997 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[0]([VC null @ chr1:988 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[100]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[101]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[102]([VC null @ chr1:1000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[103]([VC null @ chr1:1000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[104]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[105]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[106]([VC null @ chr1:2000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[107]([VC null @ chr1:2000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[108]([VC null @ chr1:997-999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[109]([VC null @ chr1:997-999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[10]([VC null @ chr1:2005 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[110]([VC null @ chr1:2001-2003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[111]([VC null @ chr1:2001-2003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[112]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 1, 0, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[113]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 1, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[114]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 1, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[115]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 1, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[116]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 1, 0, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[117]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 1, 0, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[118]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 1, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[119]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 0, 1, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[11]([VC null @ chr1:2010 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[120]([VC null @ chr2:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[121]([VC null @ chr2:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[122]([VC null @ chr2:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[123]([VC null @ chr2:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[12]([VC null @ chr1:2011 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[13]([VC null @ chr1:2012 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[14]([VC null @ chr1:988 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[15]([VC null @ chr1:989 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0.001s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[16]([VC null @ chr1:990 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[17]([VC null @ chr1:995 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[18]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[19]([VC null @ chr1:1000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[1]([VC null @ chr1:989 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[20]([VC null @ chr1:1001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[21]([VC null @ chr1:1999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[22]([VC null @ chr1:2000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[23]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[24]([VC null @ chr1:2005 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[25]([VC null @ chr1:2010 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[26]([VC null @ chr1:2011 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[27]([VC null @ chr1:2012 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[28]([VC null @ chr1:988 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[29]([VC null @ chr1:989 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[2]([VC null @ chr1:990 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[30]([VC null @ chr1:990 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[31]([VC null @ chr1:995 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[32]([VC null @ chr1:999 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[33]([VC null @ chr1:1000 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[34]([VC null @ chr1:1001 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[35]([VC null @ chr1:1999 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[36]([VC null @ chr1:2000 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[37]([VC null @ chr1:2001 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[38]([VC null @ chr1:2005 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[39]([VC null @ chr1:2010 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[3]([VC null @ chr1:995 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[40]([VC null @ chr1:2011 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[41]([VC null @ chr1:2012 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[42]([VC null @ chr1:988 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[43]([VC null @ chr1:989 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[44]([VC null @ chr1:990 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[45]([VC null @ chr1:995 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[46]([VC null @ chr1:999 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[47]([VC null @ chr1:1000 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[48]([VC null @ chr1:1001 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[49]([VC null @ chr1:1999 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[4]([VC null @ chr1:999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[50]([VC null @ chr1:2000 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[51]([VC null @ chr1:2001 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[52]([VC null @ chr1:2005 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[53]([VC null @ chr1:2010 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[54]([VC null @ chr1:2011 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[55]([VC null @ chr1:2012 Q. of type=INDEL alleles=[A*, GT] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[56]([VC null @ chr1:986-988 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0.001s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[57]([VC null @ chr1:987-989 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[58]([VC null @ chr1:988-990 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[59]([VC null @ chr1:989-991 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[5]([VC null @ chr1:1000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[60]([VC null @ chr1:990-992 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[61]([VC null @ chr1:994-996 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[62]([VC null @ chr1:997-999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[63]([VC null @ chr1:998-1000 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[64]([VC null @ chr1:999-1001 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[65]([VC null @ chr1:1000-1002 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[66]([VC null @ chr1:1001-1003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[67]([VC null @ chr1:1997-1999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[68]([VC null @ chr1:1998-2000 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0.001s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[69]([VC null @ chr1:1999-2001 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[6]([VC null @ chr1:1001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[70]([VC null @ chr1:2000-2002 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[71]([VC null @ chr1:2001-2003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[72]([VC null @ chr1:2004-2006 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[73]([VC null @ chr1:2008-2010 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[74]([VC null @ chr1:2009-2011 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[75]([VC null @ chr1:2010-2012 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[76]([VC null @ chr1:2011-2013 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[77]([VC null @ chr1:2012-2014 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[78]([VC null @ chr1:986-988 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[79]([VC null @ chr1:987-989 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[7]([VC null @ chr1:1999 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[80]([VC null @ chr1:988-990 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[81]([VC null @ chr1:989-991 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[82]([VC null @ chr1:990-992 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0.001s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[83]([VC null @ chr1:994-996 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[84]([VC null @ chr1:997-999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[85]([VC null @ chr1:998-1000 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[86]([VC null @ chr1:999-1001 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[87]([VC null @ chr1:1000-1002 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[88]([VC null @ chr1:1001-1003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[89]([VC null @ chr1:1997-1999 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[8]([VC null @ chr1:2000 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[90]([VC null @ chr1:1998-2000 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[91]([VC null @ chr1:1999-2001 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[92]([VC null @ chr1:2000-2002 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[93]([VC null @ chr1:2001-2003 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[94]([VC null @ chr1:2004-2006 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[95]([VC null @ chr1:2008-2010 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[96]([VC null @ chr1:2009-2011 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[97]([VC null @ chr1:2010-2012 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, true, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[98]([VC null @ chr1:2011-2013 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[99]([VC null @ chr1:2012-2014 Q. of type=INDEL alleles=[ACT*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . - . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, false) |
0s |
passed |
| testIsFivePrimeFlankAndIsThreePrimeFlank[9]([VC null @ chr1:2001 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=, chr1 ENSEMBL transcript 1000 2000 . + . gene_id "FakeGeneID"; transcript_id "FakeTranscriptID"; gene_type "protein_coding"; gene_name "FakeGeneName"; transcript_type "protein_coding"; transcript_name "FakeTranscriptName"; level 3;, 10, 10, false, true) |
0s |
passed |
| testIsVariantInCodingRegion[0](INTRON, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[10](IGR, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[11](IGR, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[12](FIVE_PRIME_FLANK, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[13](FIVE_PRIME_FLANK, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[14](FIVE_PRIME_FLANK, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[15](DE_NOVO_START_IN_FRAME, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[16](DE_NOVO_START_IN_FRAME, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[17](DE_NOVO_START_IN_FRAME, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[18](DE_NOVO_START_OUT_FRAME, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[19](DE_NOVO_START_OUT_FRAME, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[1](INTRON, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[20](DE_NOVO_START_OUT_FRAME, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[21](RNA, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[22](RNA, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[23](RNA, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[24](LINCRNA, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[25](LINCRNA, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[26](LINCRNA, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[27](MISSENSE, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[28](MISSENSE, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[29](MISSENSE, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[2](INTRON, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[30](NONSENSE, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[31](NONSENSE, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[32](NONSENSE, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[33](NONSTOP, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[34](NONSTOP, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[35](NONSTOP, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[36](SILENT, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[37](SILENT, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[38](SILENT, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[39](IN_FRAME_DEL, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[3](FIVE_PRIME_UTR, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[40](IN_FRAME_DEL, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[41](IN_FRAME_DEL, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[42](IN_FRAME_INS, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[43](IN_FRAME_INS, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[44](IN_FRAME_INS, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[45](FRAME_SHIFT_INS, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[46](FRAME_SHIFT_INS, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[47](FRAME_SHIFT_INS, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[48](FRAME_SHIFT_DEL, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[49](FRAME_SHIFT_DEL, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[4](FIVE_PRIME_UTR, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[50](FRAME_SHIFT_DEL, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[51](START_CODON_SNP, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[52](START_CODON_SNP, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[53](START_CODON_SNP, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[54](START_CODON_INS, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[55](START_CODON_INS, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[56](START_CODON_INS, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[57](START_CODON_DEL, null, true) |
0s |
passed |
| testIsVariantInCodingRegion[58](START_CODON_DEL, INTRON, true) |
0s |
passed |
| testIsVariantInCodingRegion[59](START_CODON_DEL, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[5](FIVE_PRIME_UTR, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[60](SPLICE_SITE, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[61](SPLICE_SITE, MISSENSE, true) |
0s |
passed |
| testIsVariantInCodingRegion[6](THREE_PRIME_UTR, null, false) |
0s |
passed |
| testIsVariantInCodingRegion[7](THREE_PRIME_UTR, INTRON, false) |
0s |
passed |
| testIsVariantInCodingRegion[8](THREE_PRIME_UTR, MISSENSE, false) |
0s |
passed |
| testIsVariantInCodingRegion[9](IGR, null, false) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[0]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.7829838236545116"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;], []) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[10]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.7104337348894423"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.7104337348894423"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[11]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[12]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";], [chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[13]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5133861524007896"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5133861524007896"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[14]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";], [chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.9649492578255228"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[15]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5812541316190547"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Plus_Clinical";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5812541316190547"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Plus_Clinical";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[16]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.7104337348894423"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.4563543884032967"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical"; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.4563543884032967"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical"; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[1]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[2]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[3]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5133861524007896"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5133861524007896"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[4]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.4563543884032967"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical"; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.4563543884032967"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Plus_Clinical"; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[5]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[6]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.5657171479062415"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "MANE_Select";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[7]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.7829838236545116"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3;, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.1775000374308403"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";], [chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.1775000374308403"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[8]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.1775000374308403"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 102 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.1775000374308403"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";]) |
0s |
passed |
| testMANESelectTranscriptSelectionCriteria[9]([chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.18098831585138286"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic";, chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";], [chr1 HAVANA gene 99 101 . + . gene_id "TEST-GENE-ID"; transcript_id "TEST-TX-ID-0.45686285339713695"; gene_type "protein_coding"; gene_status "PUTATIVE"; gene_name "TEST-GENE"; transcript_type "protein_coding"; transcript_status "PUTATIVE"; transcript_name "TEST-TX"; exon_number 1; exon_id ""; level 3; tag "basic"; tag "MANE_Select";]) |
0s |
passed |
| testMuc16SnpCreateFuncotations[0](19, 9073586, 9073586, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1000](19, 9065230, 9065230, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[1001](19, 9065265, 9065265, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1002](19, 9065268, 9065268, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1003](19, 9065317, 9065317, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1004](19, 9065348, 9065348, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1005](19, 9065364, 9065364, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1006](19, 9065396, 9065396, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1007](19, 9065398, 9065398, SNP, A, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1008](19, 9065405, 9065405, SNP, G, A, SILENT) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1009](19, 9065406, 9065406, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[100](19, 9077142, 9077142, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[1010](19, 9065502, 9065502, SNP, G, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1011](19, 9065535, 9065535, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1012](19, 9065577, 9065577, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1013](19, 9065681, 9065681, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1014](19, 9065698, 9065698, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1015](19, 9065720, 9065720, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1016](19, 9065721, 9065721, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1017](19, 9065737, 9065737, SNP, G, A, NONSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1018](19, 9065739, 9065739, SNP, A, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1019](19, 9065788, 9065788, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[101](19, 9077155, 9077155, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1020](19, 9065824, 9065824, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1021](19, 9065829, 9065829, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1022](19, 9065866, 9065866, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1023](19, 9065879, 9065879, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1024](19, 9065888, 9065888, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1025](19, 9065925, 9065925, SNP, G, A, MISSENSE) |
0.092s |
passed |
| testMuc16SnpCreateFuncotations[1026](19, 9065994, 9065994, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1027](19, 9066038, 9066038, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1028](19, 9066073, 9066073, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1029](19, 9066116, 9066116, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[102](19, 9077159, 9077159, SNP, C, T, NONSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1030](19, 9066121, 9066121, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1031](19, 9066158, 9066158, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1032](19, 9066175, 9066175, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1033](19, 9066182, 9066182, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1034](19, 9066184, 9066184, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1035](19, 9066247, 9066247, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1036](19, 9066331, 9066331, SNP, A, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1037](19, 9066340, 9066340, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1038](19, 9066356, 9066356, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1039](19, 9066420, 9066420, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[103](19, 9077248, 9077248, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[1040](19, 9066457, 9066457, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1041](19, 9066477, 9066477, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1042](19, 9066494, 9066494, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1043](19, 9066502, 9066502, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1044](19, 9066519, 9066519, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1045](19, 9066520, 9066520, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1046](19, 9066532, 9066532, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1047](19, 9066554, 9066554, SNP, A, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1048](19, 9066570, 9066570, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1049](19, 9066578, 9066578, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[104](19, 9077276, 9077276, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1050](19, 9066587, 9066587, SNP, C, T, SILENT) |
0.090s |
passed |
| testMuc16SnpCreateFuncotations[1051](19, 9066603, 9066603, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1052](19, 9066695, 9066695, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1053](19, 9066772, 9066772, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1054](19, 9067129, 9067129, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1055](19, 9067148, 9067148, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1056](19, 9067149, 9067149, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1057](19, 9067219, 9067219, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1058](19, 9067222, 9067222, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1059](19, 9067224, 9067224, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[105](19, 9077304, 9077304, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[1060](19, 9067233, 9067233, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1061](19, 9067238, 9067238, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1062](19, 9067275, 9067275, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1063](19, 9067300, 9067300, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1064](19, 9067326, 9067326, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1065](19, 9067330, 9067330, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[1066](19, 9067341, 9067341, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1067](19, 9067342, 9067342, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1068](19, 9067346, 9067346, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1069](19, 9067427, 9067427, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[106](19, 9077349, 9077349, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1070](19, 9067445, 9067445, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1071](19, 9067464, 9067464, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1072](19, 9067484, 9067484, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1073](19, 9067504, 9067504, SNP, C, A, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1074](19, 9067599, 9067599, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1075](19, 9067623, 9067623, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[1076](19, 9067633, 9067633, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1077](19, 9067634, 9067634, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1078](19, 9067679, 9067679, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1079](19, 9067716, 9067716, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[107](19, 9077387, 9077387, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1080](19, 9067811, 9067811, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1081](19, 9067834, 9067834, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1082](19, 9067908, 9067908, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1083](19, 9067930, 9067930, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1084](19, 9068001, 9068001, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1085](19, 9068007, 9068007, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1086](19, 9068032, 9068032, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1087](19, 9068061, 9068061, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1088](19, 9068069, 9068069, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1089](19, 9068117, 9068117, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[108](19, 9077420, 9077420, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1090](19, 9068151, 9068151, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1091](19, 9068160, 9068160, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1092](19, 9068203, 9068203, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1093](19, 9068217, 9068217, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1094](19, 9068223, 9068223, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1095](19, 9068232, 9068232, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1096](19, 9068247, 9068247, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1097](19, 9068288, 9068288, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1098](19, 9068306, 9068306, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[1099](19, 9068327, 9068327, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[109](19, 9077424, 9077424, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[10](19, 9074058, 9074058, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1100](19, 9068354, 9068354, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1101](19, 9068396, 9068396, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1102](19, 9068414, 9068414, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1103](19, 9068444, 9068444, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1104](19, 9068484, 9068484, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1105](19, 9068506, 9068506, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1106](19, 9068621, 9068621, SNP, T, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[1107](19, 9068660, 9068660, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1108](19, 9068671, 9068671, SNP, G, A, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1109](19, 9068704, 9068704, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[110](19, 9077469, 9077469, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1110](19, 9068743, 9068743, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1111](19, 9068756, 9068756, SNP, T, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1112](19, 9068790, 9068790, SNP, T, C, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1113](19, 9068830, 9068830, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1114](19, 9068846, 9068846, SNP, C, T, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[1115](19, 9068878, 9068878, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1116](19, 9068901, 9068901, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1117](19, 9068965, 9068965, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1118](19, 9069045, 9069045, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1119](19, 9069052, 9069052, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[111](19, 9077502, 9077502, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1120](19, 9069094, 9069094, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1121](19, 9069097, 9069097, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1122](19, 9069117, 9069117, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1123](19, 9069180, 9069180, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1124](19, 9069185, 9069185, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1125](19, 9069347, 9069347, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1126](19, 9069352, 9069352, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1127](19, 9069366, 9069366, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1128](19, 9069395, 9069395, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1129](19, 9069548, 9069548, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[112](19, 9077510, 9077510, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1130](19, 9069570, 9069570, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1131](19, 9069614, 9069614, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1132](19, 9069622, 9069622, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1133](19, 9069660, 9069660, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1134](19, 9069682, 9069682, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1135](19, 9069683, 9069683, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1136](19, 9069690, 9069690, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1137](19, 9069754, 9069754, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1138](19, 9069821, 9069821, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1139](19, 9069839, 9069839, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[113](19, 9077538, 9077538, SNP, C, T, MISSENSE) |
0.090s |
passed |
| testMuc16SnpCreateFuncotations[1140](19, 9069874, 9069874, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1141](19, 9069895, 9069895, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1142](19, 9069926, 9069926, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1143](19, 9069981, 9069981, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1144](19, 9070067, 9070067, SNP, G, A, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1145](19, 9070090, 9070090, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1146](19, 9070154, 9070154, SNP, A, C, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1147](19, 9070177, 9070177, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[1148](19, 9070231, 9070231, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1149](19, 9070251, 9070251, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[114](19, 9077594, 9077594, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1150](19, 9070255, 9070255, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1151](19, 9070263, 9070263, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1152](19, 9070319, 9070319, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1153](19, 9070360, 9070360, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1154](19, 9070394, 9070394, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1155](19, 9070500, 9070500, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1156](19, 9070509, 9070509, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1157](19, 9070515, 9070515, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1158](19, 9070533, 9070533, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1159](19, 9070546, 9070546, SNP, G, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[115](19, 9077652, 9077652, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[1160](19, 9070548, 9070548, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1161](19, 9070567, 9070567, SNP, C, T, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[1162](19, 9070578, 9070578, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1163](19, 9070674, 9070674, SNP, C, T, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[1164](19, 9070704, 9070704, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1165](19, 9070705, 9070705, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1166](19, 9070708, 9070708, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1167](19, 9070709, 9070709, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1168](19, 9070778, 9070778, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1169](19, 9070817, 9070817, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[116](19, 9077700, 9077700, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1170](19, 9070835, 9070835, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1171](19, 9070856, 9070856, SNP, G, A, SILENT) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1172](19, 9070884, 9070884, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1173](19, 9070955, 9070955, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1174](19, 9070973, 9070973, SNP, C, T, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1175](19, 9071105, 9071105, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1176](19, 9071190, 9071190, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1177](19, 9071243, 9071243, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1178](19, 9071252, 9071252, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1179](19, 9071269, 9071269, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[117](19, 9077717, 9077717, SNP, T, C, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1180](19, 9071280, 9071280, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1181](19, 9071324, 9071324, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1182](19, 9071371, 9071371, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1183](19, 9071467, 9071467, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1184](19, 9071513, 9071513, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1185](19, 9071592, 9071592, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1186](19, 9071595, 9071595, SNP, A, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1187](19, 9071650, 9071650, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1188](19, 9071657, 9071657, SNP, T, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1189](19, 9071673, 9071673, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[118](19, 9077720, 9077720, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1190](19, 9071723, 9071723, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1191](19, 9071744, 9071744, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1192](19, 9071745, 9071745, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1193](19, 9071765, 9071765, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1194](19, 9071825, 9071825, SNP, T, G, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1195](19, 9071953, 9071953, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1196](19, 9071966, 9071966, SNP, C, A, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1197](19, 9072036, 9072036, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1198](19, 9072087, 9072087, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1199](19, 9072091, 9072091, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[119](19, 9077726, 9077726, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[11](19, 9074082, 9074082, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1200](19, 9072100, 9072100, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[1201](19, 9072101, 9072101, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1202](19, 9072128, 9072128, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1203](19, 9072184, 9072184, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1204](19, 9072251, 9072251, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[1205](19, 9072284, 9072284, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1206](19, 9072286, 9072286, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1207](19, 9072287, 9072287, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1208](19, 9072320, 9072320, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1209](19, 9072321, 9072321, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[120](19, 9077737, 9077737, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1210](19, 9072326, 9072326, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1211](19, 9072352, 9072352, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1212](19, 9072407, 9072407, SNP, C, T, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[1213](19, 9072414, 9072414, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1214](19, 9072421, 9072421, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1215](19, 9072472, 9072472, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1216](19, 9072482, 9072482, SNP, A, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1217](19, 9072508, 9072508, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1218](19, 9072540, 9072540, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1219](19, 9072587, 9072587, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[121](19, 9077764, 9077764, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[1220](19, 9072618, 9072618, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[1221](19, 9072625, 9072625, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1222](19, 9072702, 9072702, SNP, A, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1223](19, 9072723, 9072723, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1224](19, 9072763, 9072763, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[1225](19, 9072844, 9072844, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1226](19, 9072845, 9072845, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1227](19, 9073021, 9073021, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1228](19, 9073131, 9073131, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1229](19, 9073213, 9073213, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[122](19, 9077766, 9077766, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[1230](19, 9073396, 9073396, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1231](19, 9073481, 9073481, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[1232](19, 9073507, 9073507, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[1233](19, 9073527, 9073527, SNP, G, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1234](19, 9080450, 9080450, SNP, C, T, SPLICE_SITE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1235](19, 8994416, 8994416, SNP, C, T, SPLICE_SITE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[1236](19, 9000146, 9000146, SNP, C, T, SPLICE_SITE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[123](19, 9077809, 9077809, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[124](19, 9077817, 9077817, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[125](19, 9077822, 9077822, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[126](19, 9077847, 9077847, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[127](19, 9080501, 9080501, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[128](19, 9080519, 9080519, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[129](19, 9082363, 9082363, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[12](19, 9074139, 9074139, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[130](19, 9082364, 9082364, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[131](19, 9082369, 9082369, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[132](19, 9082412, 9082412, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[133](19, 9082421, 9082421, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[134](19, 9082451, 9082451, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[135](19, 9082466, 9082466, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[136](19, 9082490, 9082490, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[137](19, 9082505, 9082505, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[138](19, 9082508, 9082508, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[139](19, 9082600, 9082600, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[13](19, 9074140, 9074140, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[140](19, 9082626, 9082626, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[141](19, 9082643, 9082643, SNP, C, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[142](19, 9082654, 9082654, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[143](19, 9082689, 9082689, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[144](19, 9082792, 9082792, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[145](19, 9082794, 9082794, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[146](19, 9082904, 9082904, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[147](19, 9082925, 9082925, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[148](19, 9082977, 9082977, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[149](19, 9082989, 9082989, SNP, C, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[14](19, 9074153, 9074153, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[150](19, 9083027, 9083027, SNP, A, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[151](19, 9083035, 9083035, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[152](19, 9083067, 9083067, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[153](19, 9083076, 9083076, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[154](19, 9083098, 9083098, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[155](19, 9083160, 9083160, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[156](19, 9083224, 9083224, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[157](19, 9083238, 9083238, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[158](19, 9083258, 9083258, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[159](19, 9083269, 9083269, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[15](19, 9074177, 9074177, SNP, A, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[160](19, 9083281, 9083281, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[161](19, 9083300, 9083300, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[162](19, 9083313, 9083313, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[163](19, 9083324, 9083324, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[164](19, 9083352, 9083352, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[165](19, 9083416, 9083416, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[166](19, 9083474, 9083474, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[167](19, 9083510, 9083510, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[168](19, 9083532, 9083532, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[169](19, 9083542, 9083542, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[16](19, 9074179, 9074179, SNP, A, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[170](19, 9083554, 9083554, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[171](19, 9083586, 9083586, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[172](19, 9083611, 9083611, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[173](19, 9083630, 9083630, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[174](19, 9083644, 9083644, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[175](19, 9083846, 9083846, SNP, G, C, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[176](19, 9083864, 9083864, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[177](19, 9083882, 9083882, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[178](19, 9083906, 9083906, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[179](19, 9084051, 9084051, SNP, T, C, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[17](19, 9074184, 9074184, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[180](19, 9084244, 9084244, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[181](19, 9084257, 9084257, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[182](19, 9084263, 9084263, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[183](19, 9084492, 9084492, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[184](19, 9084500, 9084500, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[185](19, 9084523, 9084523, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[186](19, 9084542, 9084542, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[187](19, 9084598, 9084598, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[188](19, 9084604, 9084604, SNP, G, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[189](19, 9084607, 9084607, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[18](19, 9074217, 9074217, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[190](19, 9084638, 9084638, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[191](19, 9084665, 9084665, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[192](19, 9084701, 9084701, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[193](19, 9084753, 9084753, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[194](19, 9084779, 9084779, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[195](19, 9084790, 9084790, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[196](19, 9084874, 9084874, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[197](19, 9084930, 9084930, SNP, C, T, NONSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[198](19, 9084946, 9084946, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[199](19, 9085008, 9085008, SNP, C, T, SILENT) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[19](19, 9074222, 9074222, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[1](19, 9073623, 9073623, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[200](19, 9085016, 9085016, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[201](19, 9085017, 9085017, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[202](19, 9085046, 9085046, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[203](19, 9085057, 9085057, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[204](19, 9085237, 9085237, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[205](19, 9085246, 9085246, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[206](19, 9085264, 9085264, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[207](19, 9085301, 9085301, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[208](19, 9085314, 9085314, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[209](19, 9085370, 9085370, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[20](19, 9074244, 9074244, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[210](19, 9085375, 9085375, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[211](19, 9085376, 9085376, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[212](19, 9085397, 9085397, SNP, T, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[213](19, 9085435, 9085435, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[214](19, 9085456, 9085456, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[215](19, 9085475, 9085475, SNP, G, A, NONSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[216](19, 9085498, 9085498, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[217](19, 9085504, 9085504, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[218](19, 9085534, 9085534, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[219](19, 9085544, 9085544, SNP, G, A, MISSENSE) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[21](19, 9074263, 9074263, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[220](19, 9085550, 9085550, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[221](19, 9085554, 9085554, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[222](19, 9085565, 9085565, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[223](19, 9085580, 9085580, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[224](19, 9085586, 9085586, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[225](19, 9085591, 9085591, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[226](19, 9085622, 9085622, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[227](19, 9085631, 9085631, SNP, T, C, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[228](19, 9085683, 9085683, SNP, C, T, SILENT) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[229](19, 9085734, 9085734, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[22](19, 9074280, 9074280, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[230](19, 9085769, 9085769, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[231](19, 9085830, 9085830, SNP, A, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[232](19, 9085838, 9085838, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[233](19, 9085846, 9085846, SNP, A, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[234](19, 9085985, 9085985, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[235](19, 9085991, 9085991, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[236](19, 9085995, 9085995, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[237](19, 9085999, 9085999, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[238](19, 9086131, 9086131, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[239](19, 9086149, 9086149, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[23](19, 9074295, 9074295, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[240](19, 9086150, 9086150, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[241](19, 9086175, 9086175, SNP, A, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[242](19, 9086177, 9086177, SNP, C, T, MISSENSE) |
0.090s |
passed |
| testMuc16SnpCreateFuncotations[243](19, 9086190, 9086190, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[244](19, 9086274, 9086274, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[245](19, 9086450, 9086450, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[246](19, 9086464, 9086464, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[247](19, 9086521, 9086521, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[248](19, 9086535, 9086535, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[249](19, 9086595, 9086595, SNP, A, G, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[24](19, 9074385, 9074385, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[250](19, 9086617, 9086617, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[251](19, 9086684, 9086684, SNP, C, T, MISSENSE) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[252](19, 9086687, 9086687, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[253](19, 9086692, 9086692, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[254](19, 9086706, 9086706, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[255](19, 9086712, 9086712, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[256](19, 9086722, 9086722, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[257](19, 9086743, 9086743, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[258](19, 9086812, 9086812, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[259](19, 9086816, 9086816, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[25](19, 9074523, 9074523, SNP, C, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[260](19, 9086851, 9086851, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[261](19, 9086857, 9086857, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[262](19, 9086883, 9086883, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[263](19, 9086891, 9086891, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[264](19, 9086960, 9086960, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[265](19, 9087098, 9087098, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[266](19, 9087174, 9087174, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[267](19, 9087251, 9087251, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[268](19, 9087344, 9087344, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[269](19, 9087347, 9087347, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[26](19, 9074565, 9074565, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[270](19, 9087373, 9087373, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[271](19, 9087450, 9087450, SNP, G, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[272](19, 9087495, 9087495, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[273](19, 9087601, 9087601, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[274](19, 9087679, 9087679, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[275](19, 9087697, 9087697, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[276](19, 9087718, 9087718, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[277](19, 9087822, 9087822, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[278](19, 9087881, 9087881, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[279](19, 9087887, 9087887, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[27](19, 9074606, 9074606, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[280](19, 9087897, 9087897, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[281](19, 9087899, 9087899, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[282](19, 9087904, 9087904, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[283](19, 9087932, 9087932, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[284](19, 9087944, 9087944, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[285](19, 9088081, 9088081, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[286](19, 9088103, 9088103, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[287](19, 9088106, 9088106, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[288](19, 9088132, 9088132, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[289](19, 9088159, 9088159, SNP, G, A, MISSENSE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[28](19, 9074625, 9074625, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[290](19, 9088160, 9088160, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[291](19, 9088177, 9088177, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[292](19, 9088178, 9088178, SNP, C, T, MISSENSE) |
0.093s |
passed |
| testMuc16SnpCreateFuncotations[293](19, 9088237, 9088237, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[294](19, 9088300, 9088300, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[295](19, 9088326, 9088326, SNP, G, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[296](19, 9088334, 9088334, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[297](19, 9088356, 9088356, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[298](19, 9088430, 9088430, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[299](19, 9088509, 9088509, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[29](19, 9074665, 9074665, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[2](19, 9073638, 9073638, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[300](19, 9088521, 9088521, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[301](19, 9088564, 9088564, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[302](19, 9088636, 9088636, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[303](19, 9088726, 9088726, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[304](19, 9088734, 9088734, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[305](19, 9088751, 9088751, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[306](19, 9088781, 9088781, SNP, T, C, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[307](19, 9088812, 9088812, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[308](19, 9088815, 9088815, SNP, T, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[309](19, 9088834, 9088834, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[30](19, 9074696, 9074696, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[310](19, 9088839, 9088839, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[311](19, 9088841, 9088841, SNP, G, C, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[312](19, 9088904, 9088904, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[313](19, 9088939, 9088939, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[314](19, 9088960, 9088960, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[315](19, 9088962, 9088962, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[316](19, 9089000, 9089000, SNP, T, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[317](19, 9089011, 9089011, SNP, G, A, MISSENSE) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[318](19, 9089035, 9089035, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[319](19, 9089082, 9089082, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[31](19, 9074822, 9074822, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[320](19, 9089089, 9089089, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[321](19, 9089115, 9089115, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[322](19, 9089119, 9089119, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[323](19, 9089120, 9089120, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[324](19, 9089128, 9089128, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[325](19, 9089200, 9089200, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[326](19, 9089201, 9089201, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[327](19, 9089206, 9089206, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[328](19, 9089213, 9089213, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[329](19, 9089251, 9089251, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[32](19, 9074844, 9074844, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[330](19, 9089417, 9089417, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[331](19, 9089422, 9089422, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[332](19, 9089446, 9089446, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[333](19, 9089545, 9089545, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[334](19, 9089550, 9089550, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[335](19, 9089551, 9089551, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[336](19, 9089598, 9089598, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[337](19, 9089612, 9089612, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[338](19, 9089642, 9089642, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[339](19, 9089658, 9089658, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[33](19, 9074848, 9074848, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[340](19, 9089680, 9089680, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[341](19, 9089699, 9089699, SNP, G, A, MISSENSE) |
0.090s |
passed |
| testMuc16SnpCreateFuncotations[342](19, 9089737, 9089737, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[343](19, 9089741, 9089741, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[344](19, 9089865, 9089865, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[345](19, 9089866, 9089866, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[346](19, 9089878, 9089878, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[347](19, 9089883, 9089883, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[348](19, 9089904, 9089904, SNP, G, A, SILENT) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[349](19, 9089917, 9089917, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[34](19, 9074858, 9074858, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[350](19, 9089934, 9089934, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[351](19, 9089940, 9089940, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[352](19, 9089977, 9089977, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[353](19, 9089986, 9089986, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[354](19, 9089999, 9089999, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[355](19, 9090068, 9090068, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[356](19, 9090078, 9090078, SNP, C, T, SILENT) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[357](19, 9090102, 9090102, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[358](19, 9090133, 9090133, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[359](19, 9090172, 9090172, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[35](19, 9074867, 9074867, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[360](19, 9090179, 9090179, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[361](19, 9090186, 9090186, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[362](19, 9090293, 9090293, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[363](19, 9090331, 9090331, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[364](19, 9090343, 9090343, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[365](19, 9090379, 9090379, SNP, G, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[366](19, 9090467, 9090467, SNP, C, T, MISSENSE) |
0.091s |
passed |
| testMuc16SnpCreateFuncotations[367](19, 9090482, 9090482, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[368](19, 9090497, 9090497, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[369](19, 9090523, 9090523, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[36](19, 9074883, 9074883, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[370](19, 9090527, 9090527, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[371](19, 9090533, 9090533, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[372](19, 9090539, 9090539, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[373](19, 9090556, 9090556, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[374](19, 9090567, 9090567, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[375](19, 9090630, 9090630, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[376](19, 9090653, 9090653, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[377](19, 9090722, 9090722, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[378](19, 9090729, 9090729, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[379](19, 9090748, 9090748, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[37](19, 9074894, 9074894, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[380](19, 9090772, 9090772, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[381](19, 9090789, 9090789, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[382](19, 9090790, 9090790, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[383](19, 9090826, 9090826, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[384](19, 9090831, 9090831, SNP, A, G, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[385](19, 9091052, 9091052, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[386](19, 9091108, 9091108, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[387](19, 9091122, 9091122, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[388](19, 9091124, 9091124, SNP, C, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[389](19, 9091160, 9091160, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[38](19, 9074898, 9074898, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[390](19, 9091236, 9091236, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[391](19, 9091259, 9091259, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[392](19, 9091275, 9091275, SNP, C, T, NONSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[393](19, 9091388, 9091388, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[394](19, 9091402, 9091402, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[395](19, 9091430, 9091430, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[396](19, 9091441, 9091441, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[397](19, 9091470, 9091470, SNP, C, T, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[398](19, 9091517, 9091517, SNP, T, C, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[399](19, 9091556, 9091556, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[39](19, 9074907, 9074907, SNP, C, T, MISSENSE) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[3](19, 9073656, 9073656, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[400](19, 9091567, 9091567, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[401](19, 9091577, 9091577, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[402](19, 9091597, 9091597, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[403](19, 9091598, 9091598, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[404](19, 9091626, 9091626, SNP, G, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[405](19, 9091639, 9091639, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[406](19, 9091661, 9091661, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[407](19, 9091671, 9091671, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[408](19, 9091810, 9091810, SNP, A, C, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[409](19, 9091815, 9091815, SNP, G, A, FIVE_PRIME_UTR) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[40](19, 9074913, 9074913, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[410](19, 8966742, 8966742, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[411](19, 8966751, 8966751, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[412](19, 8969281, 8969281, SNP, C, T, MISSENSE) |
0.095s |
passed |
| testMuc16SnpCreateFuncotations[413](19, 8969339, 8969339, SNP, G, A, SILENT) |
0.092s |
passed |
| testMuc16SnpCreateFuncotations[414](19, 8971824, 8971824, SNP, C, T, SPLICE_SITE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[415](19, 8973575, 8973575, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[416](19, 8974052, 8974052, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[417](19, 8974062, 8974062, SNP, C, T, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[418](19, 8976277, 8976277, SNP, T, C, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[419](19, 8976423, 8976423, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[41](19, 9074964, 9074964, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[420](19, 8976592, 8976592, SNP, C, T, SILENT) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[421](19, 8976641, 8976641, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[422](19, 8976750, 8976750, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[423](19, 8976756, 8976756, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[424](19, 8976763, 8976763, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[425](19, 8976783, 8976783, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[426](19, 8976784, 8976784, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[427](19, 8976789, 8976789, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[428](19, 8976814, 8976814, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[429](19, 8979244, 8979244, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[42](19, 9074987, 9074987, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[430](19, 8982210, 8982210, SNP, C, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[431](19, 8982215, 8982215, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[432](19, 8982296, 8982296, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[433](19, 8987264, 8987264, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[434](19, 8987295, 8987295, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[435](19, 8987332, 8987332, SNP, C, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[436](19, 8993038, 8993038, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[437](19, 8993392, 8993392, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[438](19, 8993398, 8993398, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[439](19, 8993436, 8993436, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[43](19, 9074991, 9074991, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[440](19, 8993443, 8993443, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[441](19, 8993535, 8993535, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[442](19, 8994157, 8994157, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[443](19, 8994429, 8994429, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[444](19, 8994476, 8994476, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[445](19, 8994489, 8994489, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[446](19, 8994501, 8994501, SNP, G, A, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[447](19, 8994510, 8994510, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[448](19, 8994513, 8994513, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[449](19, 8995651, 8995651, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[44](19, 9074994, 9074994, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[450](19, 8995652, 8995652, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[451](19, 8995663, 8995663, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[452](19, 8995693, 8995693, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[453](19, 8995964, 8995964, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[454](19, 8996339, 8996339, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[455](19, 8996340, 8996340, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[456](19, 8996474, 8996474, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[457](19, 8996489, 8996489, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[458](19, 8997151, 8997151, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[459](19, 8997177, 8997177, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[45](19, 9075170, 9075170, SNP, G, A, SILENT) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[460](19, 8997424, 8997424, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[461](19, 8997440, 8997440, SNP, T, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[462](19, 8998736, 8998736, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[463](19, 8999056, 8999056, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[464](19, 8999411, 8999411, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[465](19, 8999468, 8999468, SNP, C, T, NONSENSE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[466](19, 8999484, 8999484, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[467](19, 8999499, 8999499, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[468](19, 8999545, 8999545, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[469](19, 8999551, 8999551, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[46](19, 9075173, 9075173, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[470](19, 8999555, 8999555, SNP, C, T, SILENT) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[471](19, 9000160, 9000160, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[472](19, 9000207, 9000207, SNP, G, A, MISSENSE) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[473](19, 9000453, 9000453, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[474](19, 9000458, 9000458, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[475](19, 9000475, 9000475, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[476](19, 9001894, 9001894, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[477](19, 9002184, 9002184, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[478](19, 9002624, 9002624, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[479](19, 9002672, 9002672, SNP, G, A, SPLICE_SITE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[47](19, 9075211, 9075211, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[480](19, 9003586, 9003586, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[481](19, 9003603, 9003603, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[482](19, 9005594, 9005594, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[483](19, 9005597, 9005597, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[484](19, 9005617, 9005617, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[485](19, 9005631, 9005631, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[486](19, 9005651, 9005651, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[487](19, 9006363, 9006363, SNP, A, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[488](19, 9006660, 9006660, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[489](19, 9006662, 9006662, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[48](19, 9075252, 9075252, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[490](19, 9007535, 9007535, SNP, C, G, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[491](19, 9007833, 9007833, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[492](19, 9008208, 9008208, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[493](19, 9008345, 9008345, SNP, C, T, SPLICE_SITE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[494](19, 9009273, 9009273, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[495](19, 9009333, 9009333, SNP, A, G, SPLICE_SITE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[496](19, 9009648, 9009648, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[497](19, 9009651, 9009651, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[498](19, 9009703, 9009703, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[499](19, 9010664, 9010664, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[49](19, 9075287, 9075287, SNP, G, A, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[4](19, 9073701, 9073701, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[500](19, 9010671, 9010671, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[501](19, 9010676, 9010676, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[502](19, 9010677, 9010677, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[503](19, 9010979, 9010979, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[504](19, 9011382, 9011382, SNP, T, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[505](19, 9011397, 9011397, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[506](19, 9012794, 9012794, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[507](19, 9012839, 9012839, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[508](19, 9012850, 9012850, SNP, T, C, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[509](19, 9012861, 9012861, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[50](19, 9075298, 9075298, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[510](19, 9013857, 9013857, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[511](19, 9013882, 9013882, SNP, C, T, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[512](19, 9013898, 9013898, SNP, G, A, MISSENSE) |
0.090s |
passed |
| testMuc16SnpCreateFuncotations[513](19, 9014191, 9014191, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[514](19, 9014198, 9014198, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[515](19, 9014552, 9014552, SNP, C, T, MISSENSE) |
0.091s |
passed |
| testMuc16SnpCreateFuncotations[516](19, 9014585, 9014585, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[517](19, 9014622, 9014622, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[518](19, 9014636, 9014636, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[519](19, 9014639, 9014639, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[51](19, 9075336, 9075336, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[520](19, 9014698, 9014698, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[521](19, 9014700, 9014700, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[522](19, 9015342, 9015342, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[523](19, 9015627, 9015627, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[524](19, 9016683, 9016683, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[525](19, 9017365, 9017365, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[526](19, 9017418, 9017418, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[527](19, 9017436, 9017436, SNP, C, T, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[528](19, 9017438, 9017438, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[529](19, 9017450, 9017450, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[52](19, 9075372, 9075372, SNP, T, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[530](19, 9017514, 9017514, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[531](19, 9018453, 9018453, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[532](19, 9018458, 9018458, SNP, A, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[533](19, 9018484, 9018484, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[534](19, 9018509, 9018509, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[535](19, 9018545, 9018545, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[536](19, 9019291, 9019291, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[537](19, 9019292, 9019292, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[538](19, 9019313, 9019313, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[539](19, 9019338, 9019338, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[53](19, 9075374, 9075374, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[540](19, 9020006, 9020006, SNP, T, G, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[541](19, 9020060, 9020060, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[542](19, 9020067, 9020067, SNP, C, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[543](19, 9020077, 9020077, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[544](19, 9020092, 9020092, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[545](19, 9020132, 9020132, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[546](19, 9020785, 9020785, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[547](19, 9021059, 9021059, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[548](19, 9021104, 9021104, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[549](19, 9024172, 9024172, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[54](19, 9075383, 9075383, SNP, G, A, SILENT) |
0.077s |
passed |
| testMuc16SnpCreateFuncotations[550](19, 9024180, 9024180, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[551](19, 9024193, 9024193, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[552](19, 9024197, 9024197, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[553](19, 9025625, 9025625, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[554](19, 9026203, 9026203, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[555](19, 9026227, 9026227, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[556](19, 9026256, 9026256, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[557](19, 9026299, 9026299, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[558](19, 9027222, 9027222, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[559](19, 9027568, 9027568, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[55](19, 9075392, 9075392, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[560](19, 9028320, 9028320, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[561](19, 9028347, 9028347, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[562](19, 9028394, 9028394, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[563](19, 9033650, 9033650, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[564](19, 9038103, 9038103, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[565](19, 9038404, 9038404, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[566](19, 9043442, 9043442, SNP, C, T, NONSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[567](19, 9045590, 9045590, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[568](19, 9045613, 9045613, SNP, G, A, SILENT) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[569](19, 9045740, 9045740, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[56](19, 9075414, 9075414, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[570](19, 9045750, 9045750, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[571](19, 9045834, 9045834, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[572](19, 9045877, 9045877, SNP, C, T, NONSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[573](19, 9045903, 9045903, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[574](19, 9045922, 9045922, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[575](19, 9045944, 9045944, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[576](19, 9045956, 9045956, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[577](19, 9046005, 9046005, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[578](19, 9046026, 9046026, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[579](19, 9046043, 9046043, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[57](19, 9075484, 9075484, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[580](19, 9046044, 9046044, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[581](19, 9046048, 9046048, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[582](19, 9046062, 9046062, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[583](19, 9046066, 9046066, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[584](19, 9046079, 9046079, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[585](19, 9046165, 9046165, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[586](19, 9046168, 9046168, SNP, A, C, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[587](19, 9046211, 9046211, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[588](19, 9046254, 9046254, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[589](19, 9046272, 9046272, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[58](19, 9075542, 9075542, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[590](19, 9046410, 9046410, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[591](19, 9046505, 9046505, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[592](19, 9046526, 9046526, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[593](19, 9046592, 9046592, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[594](19, 9046600, 9046600, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[595](19, 9046630, 9046630, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[596](19, 9046631, 9046631, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[597](19, 9046738, 9046738, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[598](19, 9046787, 9046787, SNP, C, G, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[599](19, 9046853, 9046853, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[59](19, 9075654, 9075654, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[5](19, 9073721, 9073721, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[600](19, 9046907, 9046907, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[601](19, 9046923, 9046923, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[602](19, 9046965, 9046965, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[603](19, 9046973, 9046973, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[604](19, 9047030, 9047030, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[605](19, 9047124, 9047124, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[606](19, 9047148, 9047148, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[607](19, 9047175, 9047175, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[608](19, 9047181, 9047181, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[609](19, 9047238, 9047238, SNP, T, C, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[60](19, 9075684, 9075684, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[610](19, 9047336, 9047336, SNP, G, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[611](19, 9047352, 9047352, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[612](19, 9047536, 9047536, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[613](19, 9047542, 9047542, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[614](19, 9047571, 9047571, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[615](19, 9047620, 9047620, SNP, C, A, SILENT) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[616](19, 9047693, 9047693, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[617](19, 9047708, 9047708, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[618](19, 9047714, 9047714, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[619](19, 9047750, 9047750, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[61](19, 9075687, 9075687, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[620](19, 9047769, 9047769, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[621](19, 9047822, 9047822, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[622](19, 9047843, 9047843, SNP, T, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[623](19, 9047864, 9047864, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[624](19, 9047882, 9047882, SNP, A, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[625](19, 9047904, 9047904, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[626](19, 9047932, 9047932, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[627](19, 9047995, 9047995, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[628](19, 9048013, 9048013, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[629](19, 9048053, 9048053, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[62](19, 9075747, 9075747, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[630](19, 9048058, 9048058, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[631](19, 9048071, 9048071, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[632](19, 9048086, 9048086, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[633](19, 9048113, 9048113, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[634](19, 9048182, 9048182, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[635](19, 9048215, 9048215, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[636](19, 9048241, 9048241, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[637](19, 9048259, 9048259, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[638](19, 9048281, 9048281, SNP, G, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[639](19, 9048344, 9048344, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[63](19, 9075775, 9075775, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[640](19, 9048354, 9048354, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[641](19, 9048383, 9048383, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[642](19, 9048429, 9048429, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[643](19, 9048458, 9048458, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[644](19, 9048527, 9048527, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[645](19, 9048589, 9048589, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[646](19, 9048603, 9048603, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[647](19, 9048675, 9048675, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[648](19, 9048722, 9048722, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[649](19, 9048748, 9048748, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[64](19, 9075783, 9075783, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[650](19, 9048749, 9048749, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[651](19, 9048764, 9048764, SNP, A, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[652](19, 9048771, 9048771, SNP, A, G, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[653](19, 9048826, 9048826, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[654](19, 9048836, 9048836, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[655](19, 9048845, 9048845, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[656](19, 9048855, 9048855, SNP, C, G, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[657](19, 9048867, 9048867, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[658](19, 9048950, 9048950, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[659](19, 9048951, 9048951, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[65](19, 9075800, 9075800, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[660](19, 9049005, 9049005, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[661](19, 9049034, 9049034, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[662](19, 9049043, 9049043, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[663](19, 9049049, 9049049, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[664](19, 9049091, 9049091, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[665](19, 9049101, 9049101, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[666](19, 9049121, 9049121, SNP, C, T, NONSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[667](19, 9049163, 9049163, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[668](19, 9049182, 9049182, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[669](19, 9049196, 9049196, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[66](19, 9075829, 9075829, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[670](19, 9049206, 9049206, SNP, G, A, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[671](19, 9049258, 9049258, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[672](19, 9049298, 9049298, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[673](19, 9049400, 9049400, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[674](19, 9049457, 9049457, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[675](19, 9049484, 9049484, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[676](19, 9049492, 9049492, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[677](19, 9049518, 9049518, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[678](19, 9049537, 9049537, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[679](19, 9049605, 9049605, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[67](19, 9075901, 9075901, SNP, T, C, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[680](19, 9049612, 9049612, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[681](19, 9049655, 9049655, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[682](19, 9049710, 9049710, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[683](19, 9049823, 9049823, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[684](19, 9049903, 9049903, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[685](19, 9049915, 9049915, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[686](19, 9049941, 9049941, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[687](19, 9049948, 9049948, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[688](19, 9049971, 9049971, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[689](19, 9050038, 9050038, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[68](19, 9075928, 9075928, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[690](19, 9050067, 9050067, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[691](19, 9050129, 9050129, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[692](19, 9050137, 9050137, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[693](19, 9050170, 9050170, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[694](19, 9050196, 9050196, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[695](19, 9054252, 9054252, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[696](19, 9054339, 9054339, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[697](19, 9056223, 9056223, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[698](19, 9056224, 9056224, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[699](19, 9056230, 9056230, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[69](19, 9075932, 9075932, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[6](19, 9073747, 9073747, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[700](19, 9056254, 9056254, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[701](19, 9056299, 9056299, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[702](19, 9056341, 9056341, SNP, T, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[703](19, 9056344, 9056344, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[704](19, 9056435, 9056435, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[705](19, 9056445, 9056445, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[706](19, 9056448, 9056448, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[707](19, 9056480, 9056480, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[708](19, 9056557, 9056557, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[709](19, 9056563, 9056563, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[70](19, 9075994, 9075994, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[710](19, 9056568, 9056568, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[711](19, 9056574, 9056574, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[712](19, 9056625, 9056625, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[713](19, 9056720, 9056720, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[714](19, 9056722, 9056722, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[715](19, 9056776, 9056776, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[716](19, 9056795, 9056795, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[717](19, 9056805, 9056805, SNP, C, T, NONSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[718](19, 9056850, 9056850, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[719](19, 9056855, 9056855, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[71](19, 9076139, 9076139, SNP, G, A, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[720](19, 9056878, 9056878, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[721](19, 9056883, 9056883, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[722](19, 9057011, 9057011, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[723](19, 9057032, 9057032, SNP, G, A, SILENT) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[724](19, 9057040, 9057040, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[725](19, 9057066, 9057066, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[726](19, 9057093, 9057093, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[727](19, 9057123, 9057123, SNP, C, T, MISSENSE) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[728](19, 9057157, 9057157, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[729](19, 9057172, 9057172, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[72](19, 9076180, 9076180, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[730](19, 9057220, 9057220, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[731](19, 9057290, 9057290, SNP, T, G, SILENT) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[732](19, 9057356, 9057356, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[733](19, 9057364, 9057364, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[734](19, 9057378, 9057378, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[735](19, 9057400, 9057400, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[736](19, 9057542, 9057542, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[737](19, 9057556, 9057556, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[738](19, 9057582, 9057582, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[739](19, 9057584, 9057584, SNP, C, T, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[73](19, 9076269, 9076269, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[740](19, 9057605, 9057605, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[741](19, 9057615, 9057615, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[742](19, 9057632, 9057632, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[743](19, 9057713, 9057713, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[744](19, 9057747, 9057747, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[745](19, 9057754, 9057754, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[746](19, 9057771, 9057771, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[747](19, 9057787, 9057787, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[748](19, 9057803, 9057803, SNP, C, T, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[749](19, 9057805, 9057805, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[74](19, 9076306, 9076306, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[750](19, 9057895, 9057895, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[751](19, 9057898, 9057898, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[752](19, 9057930, 9057930, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[753](19, 9057936, 9057936, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[754](19, 9057962, 9057962, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[755](19, 9057986, 9057986, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[756](19, 9058027, 9058027, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[757](19, 9058034, 9058034, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[758](19, 9058049, 9058049, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[759](19, 9058095, 9058095, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[75](19, 9076384, 9076384, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[760](19, 9058106, 9058106, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[761](19, 9058153, 9058153, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[762](19, 9058180, 9058180, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[763](19, 9058186, 9058186, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[764](19, 9058191, 9058191, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[765](19, 9058194, 9058194, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[766](19, 9058245, 9058245, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[767](19, 9058260, 9058260, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[768](19, 9058282, 9058282, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[769](19, 9058283, 9058283, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[76](19, 9076401, 9076401, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[770](19, 9058301, 9058301, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[771](19, 9058358, 9058358, SNP, T, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[772](19, 9058359, 9058359, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[773](19, 9058360, 9058360, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[774](19, 9058382, 9058382, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[775](19, 9058517, 9058517, SNP, T, C, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[776](19, 9058519, 9058519, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[777](19, 9058524, 9058524, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[778](19, 9058555, 9058555, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[779](19, 9058581, 9058581, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[77](19, 9076429, 9076429, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[780](19, 9058623, 9058623, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[781](19, 9058656, 9058656, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[782](19, 9058672, 9058672, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[783](19, 9058777, 9058777, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[784](19, 9058876, 9058876, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[785](19, 9058908, 9058908, SNP, T, G, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[786](19, 9058952, 9058952, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[787](19, 9059000, 9059000, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[788](19, 9059043, 9059043, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[789](19, 9059045, 9059045, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[78](19, 9076487, 9076487, SNP, C, T, SILENT) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[790](19, 9059063, 9059063, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[791](19, 9059164, 9059164, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[792](19, 9059200, 9059200, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[793](19, 9059273, 9059273, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[794](19, 9059329, 9059329, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[795](19, 9059369, 9059369, SNP, C, T, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[796](19, 9059370, 9059370, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[797](19, 9059391, 9059391, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[798](19, 9059418, 9059418, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[799](19, 9059445, 9059445, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[79](19, 9076497, 9076497, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[7](19, 9073897, 9073897, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[800](19, 9059447, 9059447, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[801](19, 9059450, 9059450, SNP, G, A, SILENT) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[802](19, 9059483, 9059483, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[803](19, 9059493, 9059493, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[804](19, 9059510, 9059510, SNP, C, G, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[805](19, 9059574, 9059574, SNP, A, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[806](19, 9059611, 9059611, SNP, G, A, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[807](19, 9059723, 9059723, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[808](19, 9059777, 9059777, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[809](19, 9059785, 9059785, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[80](19, 9076527, 9076527, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[810](19, 9059806, 9059806, SNP, T, C, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[811](19, 9059844, 9059844, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[812](19, 9059860, 9059860, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[813](19, 9060012, 9060012, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[814](19, 9060020, 9060020, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[815](19, 9060067, 9060067, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[816](19, 9060089, 9060089, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[817](19, 9060102, 9060102, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[818](19, 9060131, 9060131, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[819](19, 9060133, 9060133, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[81](19, 9076530, 9076530, SNP, C, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[820](19, 9060158, 9060158, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[821](19, 9060189, 9060189, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[822](19, 9060190, 9060190, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[823](19, 9060196, 9060196, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[824](19, 9060263, 9060263, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[825](19, 9060272, 9060272, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[826](19, 9060306, 9060306, SNP, C, T, MISSENSE) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[827](19, 9060313, 9060313, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[828](19, 9060338, 9060338, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[829](19, 9060353, 9060353, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[82](19, 9076539, 9076539, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[830](19, 9060378, 9060378, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[831](19, 9060381, 9060381, SNP, A, G, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[832](19, 9060392, 9060392, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[833](19, 9060431, 9060431, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[834](19, 9060457, 9060457, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[835](19, 9060492, 9060492, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[836](19, 9060569, 9060569, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[837](19, 9060576, 9060576, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[838](19, 9060664, 9060664, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[839](19, 9060710, 9060710, SNP, C, T, MISSENSE) |
0.092s |
passed |
| testMuc16SnpCreateFuncotations[83](19, 9076568, 9076568, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[840](19, 9060785, 9060785, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[841](19, 9060792, 9060792, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[842](19, 9060828, 9060828, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[843](19, 9060837, 9060837, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[844](19, 9060853, 9060853, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[845](19, 9060859, 9060859, SNP, T, C, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[846](19, 9060867, 9060867, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[847](19, 9060891, 9060891, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[848](19, 9060904, 9060904, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[849](19, 9060909, 9060909, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[84](19, 9076674, 9076674, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[850](19, 9060940, 9060940, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[851](19, 9060965, 9060965, SNP, C, T, SILENT) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[852](19, 9061005, 9061005, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[853](19, 9061038, 9061038, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[854](19, 9061059, 9061059, SNP, G, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[855](19, 9061069, 9061069, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[856](19, 9061105, 9061105, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[857](19, 9061109, 9061109, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[858](19, 9061148, 9061148, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[859](19, 9061149, 9061149, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[85](19, 9076695, 9076695, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[860](19, 9061161, 9061161, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[861](19, 9061169, 9061169, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[862](19, 9061180, 9061180, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[863](19, 9061224, 9061224, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[864](19, 9061272, 9061272, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[865](19, 9061307, 9061307, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[866](19, 9061310, 9061310, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[867](19, 9061313, 9061313, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[868](19, 9061397, 9061397, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[869](19, 9061464, 9061464, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[86](19, 9076700, 9076700, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[870](19, 9061470, 9061470, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[871](19, 9061487, 9061487, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[872](19, 9061493, 9061493, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[873](19, 9061525, 9061525, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[874](19, 9061528, 9061528, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[875](19, 9061543, 9061543, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[876](19, 9061597, 9061597, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[877](19, 9061664, 9061664, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[878](19, 9061715, 9061715, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[879](19, 9061767, 9061767, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[87](19, 9076735, 9076735, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[880](19, 9061785, 9061785, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[881](19, 9061789, 9061789, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[882](19, 9061796, 9061796, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[883](19, 9061851, 9061851, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[884](19, 9061857, 9061857, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[885](19, 9061891, 9061891, SNP, A, C, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[886](19, 9061944, 9061944, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[887](19, 9061972, 9061972, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[888](19, 9061992, 9061992, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[889](19, 9062015, 9062015, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[88](19, 9076809, 9076809, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[890](19, 9062025, 9062025, SNP, G, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[891](19, 9062027, 9062027, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[892](19, 9062037, 9062037, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[893](19, 9062045, 9062045, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[894](19, 9062055, 9062055, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[895](19, 9062066, 9062066, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[896](19, 9062075, 9062075, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[897](19, 9062082, 9062082, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[898](19, 9062146, 9062146, SNP, T, G, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[899](19, 9062157, 9062157, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[89](19, 9076820, 9076820, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[8](19, 9073956, 9073956, SNP, A, C, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[900](19, 9062169, 9062169, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[901](19, 9062188, 9062188, SNP, C, T, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[902](19, 9062265, 9062265, SNP, G, A, MISSENSE) |
0.087s |
passed |
| testMuc16SnpCreateFuncotations[903](19, 9062392, 9062392, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[904](19, 9062444, 9062444, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[905](19, 9062445, 9062445, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[906](19, 9062451, 9062451, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[907](19, 9062500, 9062500, SNP, C, T, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[908](19, 9062517, 9062517, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[909](19, 9062543, 9062543, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[90](19, 9076829, 9076829, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[910](19, 9062546, 9062546, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[911](19, 9062579, 9062579, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[912](19, 9062585, 9062585, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[913](19, 9062601, 9062601, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[914](19, 9062673, 9062673, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[915](19, 9062685, 9062685, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[916](19, 9062726, 9062726, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[917](19, 9062771, 9062771, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[918](19, 9062833, 9062833, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[919](19, 9062910, 9062910, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[91](19, 9076839, 9076839, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[920](19, 9062912, 9062912, SNP, A, C, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[921](19, 9062966, 9062966, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[922](19, 9062981, 9062981, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[923](19, 9062982, 9062982, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[924](19, 9063015, 9063015, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[925](19, 9063016, 9063016, SNP, C, T, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[926](19, 9063117, 9063117, SNP, C, T, MISSENSE) |
0.089s |
passed |
| testMuc16SnpCreateFuncotations[927](19, 9063144, 9063144, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[928](19, 9063190, 9063190, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[929](19, 9063255, 9063255, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[92](19, 9076840, 9076840, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[930](19, 9063268, 9063268, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[931](19, 9063345, 9063345, SNP, G, A, MISSENSE) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[932](19, 9063387, 9063387, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[933](19, 9063434, 9063434, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[934](19, 9063438, 9063438, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[935](19, 9063451, 9063451, SNP, G, A, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[936](19, 9063486, 9063486, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[937](19, 9063534, 9063534, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[938](19, 9063547, 9063547, SNP, T, C, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[939](19, 9063558, 9063558, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[93](19, 9076887, 9076887, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[940](19, 9063558, 9063558, SNP, G, T, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[941](19, 9063559, 9063559, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[942](19, 9063570, 9063570, SNP, C, T, NONSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[943](19, 9063573, 9063573, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[944](19, 9063593, 9063593, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[945](19, 9063611, 9063611, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[946](19, 9063622, 9063622, SNP, A, C, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[947](19, 9063773, 9063773, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[948](19, 9063802, 9063802, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[949](19, 9063832, 9063832, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[94](19, 9076958, 9076958, SNP, C, T, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[950](19, 9063836, 9063836, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[951](19, 9063850, 9063850, SNP, C, T, MISSENSE) |
0.086s |
passed |
| testMuc16SnpCreateFuncotations[952](19, 9063888, 9063888, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[953](19, 9063915, 9063915, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[954](19, 9063923, 9063923, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[955](19, 9063943, 9063943, SNP, C, T, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[956](19, 9063944, 9063944, SNP, C, T, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[957](19, 9063956, 9063956, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[958](19, 9063963, 9063963, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[959](19, 9063965, 9063965, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[95](19, 9077007, 9077007, SNP, C, T, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[960](19, 9063986, 9063986, SNP, C, T, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[961](19, 9064001, 9064001, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[962](19, 9064199, 9064199, SNP, G, A, SILENT) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[963](19, 9064221, 9064221, SNP, G, A, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[964](19, 9064290, 9064290, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[965](19, 9064299, 9064299, SNP, G, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[966](19, 9064305, 9064305, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[967](19, 9064313, 9064313, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[968](19, 9064338, 9064338, SNP, G, A, MISSENSE) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[969](19, 9064344, 9064344, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[96](19, 9077049, 9077049, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[970](19, 9064379, 9064379, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[971](19, 9064386, 9064386, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[972](19, 9064399, 9064399, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[973](19, 9064403, 9064403, SNP, C, T, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[974](19, 9064409, 9064409, SNP, G, A, SILENT) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[975](19, 9064411, 9064411, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[976](19, 9064451, 9064451, SNP, G, A, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[977](19, 9064452, 9064452, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[978](19, 9064474, 9064474, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[979](19, 9064480, 9064480, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[97](19, 9077090, 9077090, SNP, G, A, SILENT) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[980](19, 9064483, 9064483, SNP, G, A, NONSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[981](19, 9064549, 9064549, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[982](19, 9064566, 9064566, SNP, G, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[983](19, 9064619, 9064619, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[984](19, 9064628, 9064628, SNP, C, T, SILENT) |
0.085s |
passed |
| testMuc16SnpCreateFuncotations[985](19, 9064631, 9064631, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[986](19, 9064667, 9064667, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[987](19, 9064689, 9064689, SNP, G, A, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[988](19, 9064721, 9064721, SNP, G, A, SILENT) |
0.088s |
passed |
| testMuc16SnpCreateFuncotations[989](19, 9064755, 9064755, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[98](19, 9077116, 9077116, SNP, G, A, MISSENSE) |
0.078s |
passed |
| testMuc16SnpCreateFuncotations[990](19, 9064771, 9064771, SNP, C, A, MISSENSE) |
0.080s |
passed |
| testMuc16SnpCreateFuncotations[991](19, 9064799, 9064799, SNP, G, A, SILENT) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[992](19, 9064856, 9064856, SNP, C, T, SILENT) |
0.084s |
passed |
| testMuc16SnpCreateFuncotations[993](19, 9064917, 9064917, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[994](19, 9065029, 9065029, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[995](19, 9065032, 9065032, SNP, G, A, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[996](19, 9065041, 9065041, SNP, C, T, MISSENSE) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[997](19, 9065080, 9065080, SNP, C, T, MISSENSE) |
0.081s |
passed |
| testMuc16SnpCreateFuncotations[998](19, 9065098, 9065098, SNP, T, C, MISSENSE) |
0.083s |
passed |
| testMuc16SnpCreateFuncotations[999](19, 9065219, 9065219, SNP, G, A, SILENT) |
0.082s |
passed |
| testMuc16SnpCreateFuncotations[99](19, 9077118, 9077118, SNP, G, A, MISSENSE) |
0.079s |
passed |
| testMuc16SnpCreateFuncotations[9](19, 9073985, 9073985, SNP, G, A, SILENT) |
0.080s |
passed |
| testMultipleGeneFeaturesOnlyProduceOneTranscript |
0.008s |
passed |
| testRequiresFeatures |
0s |
passed |
| testSimpleGenesField[0]([VC null @ chr3:2613200-3200000 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={END=3200000} GT=[] filters=, CNTN4,CNTN4-AS1) |
0.008s |
passed |
| testSimpleGenesField[1]([VC null @ chr3:2100000-3200000 Q. of type=SYMBOLIC alleles=[T*, <DEL>] attr={END=3200000} GT=[] filters=, CNTN4,CNTN4-AS1,CNTN4-AS2) |
0.003s |
passed |
| testSimpleGenesField[2]([VC null @ chr3:2100000-3200000 Q. of type=SYMBOLIC alleles=[T*, <COPY_NEUTRAL>] attr={END=3200000} GT=[] filters=, CNTN4,CNTN4-AS1,CNTN4-AS2) |
0.005s |
passed |
| testSortingOfUserRequestedTranscripts[0]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@57cfa6c9, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f8e7f268, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bb86dcdf], [ENST0000002.3], ENST0000002.3) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[10]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b4ad947e, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@fbaec06], [ENST0000003.8], ENST0000002.3) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[1]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@57cfa6c9, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f8e7f268, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bb86dcdf], [ENST0000001.4], ENST0000001.4) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[2]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5f73a7c6, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f8e7f268, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bb86dcdf], [ENST0000002.3, ENST0000001.4], ENST0000001.4) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[3]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5f73a7c6, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f8e7f268, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bb86dcdf], [ENST0000002.3, ENST0000001.4], ENST0000001.4) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[4]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5f73a7c6, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f8e7f268], [ENST0000002.3, ENST0000001.4], ENST0000001.4) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[5]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5f73a7c6, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@8bf365], [ENST0000002.3, ENST0000001.4], ENST0000001.4) |
0.001s |
passed |
| testSortingOfUserRequestedTranscripts[6]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5044af25, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@fbaec06], [ENST0000002.3, ENST0000001.4], ENST0000002.3) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[7]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@cae6bdf, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@fbaec06], [ENST0000002.3, ENST0000001.4], ENST0000002.3) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[8]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@da46bc65, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@fbaec06], [ENST0000002.3, ENST0000001.4], ENST0000002.3) |
0s |
passed |
| testSortingOfUserRequestedTranscripts[9]([org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b4ad947e, org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@fbaec06], [ENST0000002.3, ENST0000001.4], ENST0000002.3) |
0s |
passed |
| testSpliceSiteWindowSettings[0](19, 8987107, 8987107, SNP, A, G, 0, SILENT) |
0.079s |
passed |
| testSpliceSiteWindowSettings[10](19, 8987049, 8987049, SNP, G, A, 1, SILENT) |
0.077s |
passed |
| testSpliceSiteWindowSettings[11](19, 8987049, 8987049, SNP, G, A, 2, SILENT) |
0.079s |
passed |
| testSpliceSiteWindowSettings[12](19, 8987049, 8987049, SNP, G, A, 3, SILENT) |
0.089s |
passed |
| testSpliceSiteWindowSettings[13](19, 8987049, 8987049, SNP, G, A, 4, SILENT) |
0.079s |
passed |
| testSpliceSiteWindowSettings[14](19, 8987049, 8987049, SNP, G, A, 5, SPLICE_SITE) |
0.078s |
passed |
| testSpliceSiteWindowSettings[15](19, 8987049, 8987049, SNP, G, A, 6, SPLICE_SITE) |
0.078s |
passed |
| testSpliceSiteWindowSettings[16](19, 8987049, 8987049, SNP, G, A, 7, SPLICE_SITE) |
0.080s |
passed |
| testSpliceSiteWindowSettings[1](19, 8987107, 8987107, SNP, A, G, 1, SILENT) |
0.078s |
passed |
| testSpliceSiteWindowSettings[2](19, 8987107, 8987107, SNP, A, G, 2, SILENT) |
0.079s |
passed |
| testSpliceSiteWindowSettings[3](19, 8987107, 8987107, SNP, A, G, 3, SILENT) |
0.080s |
passed |
| testSpliceSiteWindowSettings[4](19, 8987107, 8987107, SNP, A, G, 4, SILENT) |
0.080s |
passed |
| testSpliceSiteWindowSettings[5](19, 8987107, 8987107, SNP, A, G, 5, SILENT) |
0.078s |
passed |
| testSpliceSiteWindowSettings[6](19, 8987107, 8987107, SNP, A, G, 6, SPLICE_SITE) |
0.078s |
passed |
| testSpliceSiteWindowSettings[7](19, 8987107, 8987107, SNP, A, G, 7, SPLICE_SITE) |
0.080s |
passed |
| testSpliceSiteWindowSettings[8](19, 8987107, 8987107, SNP, A, G, 8, SPLICE_SITE) |
0.080s |
passed |
| testSpliceSiteWindowSettings[9](19, 8987049, 8987049, SNP, G, A, 0, SILENT) |
0.077s |
passed |