| Test |
Duration |
Result |
| testExonSegmentCalculation[0](chr1:1050-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 0+, ) |
0s |
passed |
| testExonSegmentCalculation[10](chr1:1650-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2+, ) |
0s |
passed |
| testExonSegmentCalculation[11](chr1:1650-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1-, ) |
0s |
passed |
| testExonSegmentCalculation[12](chr1:1950-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 3+, ) |
0s |
passed |
| testExonSegmentCalculation[13](chr1:1950-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 0-, ) |
0.001s |
passed |
| testExonSegmentCalculation[14](chr1:1050-1550, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 0+, 1-) |
0s |
passed |
| testExonSegmentCalculation[15](chr1:1050-1550, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 3-, 2+) |
0s |
passed |
| testExonSegmentCalculation[16](chr1:1550-1850, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, 2-) |
0s |
passed |
| testExonSegmentCalculation[17](chr1:1550-1850, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, 1+) |
0s |
passed |
| testExonSegmentCalculation[18](chr1:1850-2150, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2+, 3-) |
0s |
passed |
| testExonSegmentCalculation[19](chr1:1850-2150, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1-, 0+) |
0s |
passed |
| testExonSegmentCalculation[1](chr1:1050-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 3-, ) |
0.002s |
passed |
| testExonSegmentCalculation[20](chr1:1050-1850, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 0+, 2-) |
0s |
passed |
| testExonSegmentCalculation[21](chr1:1050-1850, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 3-, 1+) |
0s |
passed |
| testExonSegmentCalculation[22](chr1:1550-2150, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, 3-) |
0s |
passed |
| testExonSegmentCalculation[23](chr1:1550-2150, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, 0+) |
0.001s |
passed |
| testExonSegmentCalculation[24](chr1:1350-1650, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, 1-) |
0s |
passed |
| testExonSegmentCalculation[25](chr1:1350-1650, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, 2+) |
0s |
passed |
| testExonSegmentCalculation[26](chr1:1650-1950, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2+, 2-) |
0s |
passed |
| testExonSegmentCalculation[27](chr1:1650-1950, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1-, 1+) |
0s |
passed |
| testExonSegmentCalculation[28](chr1:1350-1950, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, 2-) |
0s |
passed |
| testExonSegmentCalculation[29](chr1:1350-1950, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, 1+) |
0s |
passed |
| testExonSegmentCalculation[2](chr1:1550-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, ) |
0s |
passed |
| testExonSegmentCalculation[30](chr1:50-1050, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 0-) |
0s |
passed |
| testExonSegmentCalculation[31](chr1:50-1050, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 3+) |
0.001s |
passed |
| testExonSegmentCalculation[32](chr1:50-1550, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 1-) |
0s |
passed |
| testExonSegmentCalculation[33](chr1:50-1550, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 2+) |
0s |
passed |
| testExonSegmentCalculation[34](chr1:50-1850, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 2-) |
0s |
passed |
| testExonSegmentCalculation[35](chr1:50-1850, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 1+) |
0s |
passed |
| testExonSegmentCalculation[36](chr1:50-2150, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 3-) |
0s |
passed |
| testExonSegmentCalculation[37](chr1:50-2150, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 0+) |
0s |
passed |
| testExonSegmentCalculation[38](chr1:50-1350, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 0-) |
0s |
passed |
| testExonSegmentCalculation[39](chr1:50-1350, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 3+) |
0s |
passed |
| testExonSegmentCalculation[3](chr1:1550-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, ) |
0s |
passed |
| testExonSegmentCalculation[40](chr1:50-1650, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 1-) |
0.001s |
passed |
| testExonSegmentCalculation[41](chr1:50-1650, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 2+) |
0s |
passed |
| testExonSegmentCalculation[42](chr1:50-1950, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 2-) |
0s |
passed |
| testExonSegmentCalculation[43](chr1:50-1950, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , 1+) |
0s |
passed |
| testExonSegmentCalculation[44](chr1:4000-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[45](chr1:4000-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[46](chr1:1-500, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[47](chr1:1-500, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[48](chr1:1-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[49](chr1:1-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, , ) |
0s |
passed |
| testExonSegmentCalculation[4](chr1:1850-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2+, ) |
0s |
passed |
| testExonSegmentCalculation[5](chr1:1850-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1-, ) |
0s |
passed |
| testExonSegmentCalculation[6](chr1:2150-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 3+, ) |
0.001s |
passed |
| testExonSegmentCalculation[7](chr1:2150-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 0-, ) |
0s |
passed |
| testExonSegmentCalculation[8](chr1:1350-5000, chr1 ENSEMBL gene 1000 2399 . + . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL start_codon 1199 1201 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1202 1299 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL exon 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1500 1599 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1800 1899 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 2100 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL CDS 2100 2196 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL stop_codon 2197 2199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL UTR 1000 1199 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . + . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 1+, ) |
0s |
passed |
| testExonSegmentCalculation[9](chr1:1350-5000, chr1 ENSEMBL gene 1000 2399 . - . gene_id "TEST_GENE1"; gene_type "protein_coding"; gene_name "TESTING"; level 3;
chr1 ENSEMBL transcript 1000 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; level 3;
chr1 ENSEMBL exon 1000 1299 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL start_codon 1097 1200 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON1"; level 3;
chr1 ENSEMBL CDS 1000 1096 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;
chr1 ENSEMBL exon 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL CDS 1500 1599 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 3; exon_id "TEST_EXON_3"; level 3;
chr1 ENSEMBL exon 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL CDS 1800 1899 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 2; exon_id "TEST_EXON_2"; level 3;
chr1 ENSEMBL exon 2100 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL CDS 2302 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL stop_codon 2299 2301 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 2200 2399 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 1; exon_id "TEST_EXON_1"; level 3;
chr1 ENSEMBL UTR 1000 1199 . - . gene_id "TEST_GENE1"; transcript_id "TEST_TRANSCRIPT1"; gene_type "protein_coding"; gene_name "TESTING"; transcript_type "protein_coding"; transcript_name "TEST_TRANSCRIPT1"; exon_number 4; exon_id "TEST_EXON_4"; level 3;, 2-, ) |
0s |
passed |