| Test |
Duration |
Result |
| testFilterByNextAlignmentMayBeInsertion |
0.001s |
passed |
| testFilterByRegionTooSmall |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[0](20:20248787-20248787 20:20263493-20263493 REVERSE_TO_FORWARD homology: GGAGGGAGGTGGGGGGGGTCAGCCCCCCGCCCAGCCAGCCGCCCCGTCCGGGAGGTGGGGGGTGCCTCTGCCCGGCCGCCCCTACTGGGAAGTGAGGAGCCCCTCTGCCCGGCCACCACCCCGTCTGGGAGGTGTACCCAACAGCTCATTGAGAACGGGCCATGATGACAATGGCAGTTTTGTGGAATAGAAACGGGGGAAAGGTGGGGAAAAGATTGAGAAATCGGATGGTTGCTGTGTCTGTGTAGAAAGAGGTAGACATGGGAGACTTCATTTTGTTCTGTACTAAGAAAAATTCTTCTGCCTTGGGATCCTGTTGACCTATGACCTTACCCCCAACCCTGTGCTCTCTGAAACATGTGCTGTGTCCACTCAGGGTTAAATGGATTAAGGGCGGTGCAAGATGTGCTTTGTTAAACAGATGCTTGAAGGCAGCATGCTCGTTAAGAGTCATCACCACTCCCTAATCTCAAGTACCCGGGGACACAAACACTGCGGAAGGCCGCAGGGTCCTCTGCCTAGGAAAACCAGAGACCTTTGTTCACTTGTTTATCTGCTGACCTTCCCTCCACTGTTGTCCTATGACCCTGCCAAATCCCCCTCTGCGAGAAACACCCAAGAATGATCAACTAAAAAAAAAAAAGAAAAAAGAAA inserted sequence: , INV, [INV33], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0.001s |
passed |
| testInferSimpleTypeFromNovelAdjacency[10](20:312609-312609 20:312705-312705 NO_SWITCH homology: GGGGAGCTGTGAAGAATGGAGCCAGTAATTAAATTCACTGAAGTCTCCACAGGAGGGCAAGGTGGACAATCTGTCCCATAGGAGGGGGATTCATGAGGGCAGCTGTGGA inserted sequence: tandem duplication repeat unit ref span: 20:312610-312705 ref repeat num: 2 ctg repeat num: 1 dupSeqStrandOnRef: [+, +] dupSeqStrandOnCtg: [+] imprecise:, DEL, [CONTRACTION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0.001s |
passed |
| testInferSimpleTypeFromNovelAdjacency[11](20:312609-312609 20:312705-312705 NO_SWITCH homology: GGGGAGCTGTGAAGAATGGAGCCAGTAATTAAATTCACTGAAGTCTCCACAGGAGGGCAAGGTGGACAATCTGTCCCATAGGAGGGGGATTCATGAGGGGAGCTGTGAAGAATGGAGCCAGTAATTAAATTCACTGAAGTCTCCACAGGAGGGCAAGGTGGACAATCTGTCCCATAGGAGGGGGATTCAGGA inserted sequence: tandem duplication repeat unit ref span: 20:312610-312705 ref repeat num: 3 ctg repeat num: 2 dupSeqStrandOnRef: [+, +, +] dupSeqStrandOnCtg: [+, +] imprecise:, DEL, [CONTRACTION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[12](20:312609-312609 20:312609-312609 NO_SWITCH homology: GGGGAGCTGTGAAGAATGGAGCCAGTAATTAAATTCACTGAAGTCTCCACAGGAGGGCAAGGTGGACAATCTGTCCCATAGGAGGGGGATTCATGA inserted sequence: tandem duplication repeat unit ref span: 20:312610-312705 ref repeat num: 2 ctg repeat num: 3 dupSeqStrandOnRef: [+, +] dupSeqStrandOnCtg: [+, +, +] imprecise:, DUP, [EXPANSION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[1](20:200200-200200 20:200605-200605 FORWARD_TO_REVERSE homology: ACACA inserted sequence: , INV, [INV55], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[2](21:17000040-17000040 21:17000060-17000060 NO_SWITCH homology: inserted sequence: , DEL, [], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0.001s |
passed |
| testInferSimpleTypeFromNovelAdjacency[3](21:17000040-17000040 21:17000078-17000078 NO_SWITCH homology: ATCG inserted sequence: , DEL, [], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[4](21:17000100-17000100 21:17000100-17000100 NO_SWITCH homology: inserted sequence: CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC, INS, [], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[5](21:17000070-17000070 21:17000130-17000130 NO_SWITCH homology: inserted sequence: CCCCCCCCCC, DEL, [], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[6](21:17000040-17000040 21:17000050-17000050 NO_SWITCH homology: CCCCCCCCCC inserted sequence: tandem duplication repeat unit ref span: 21:17000041-17000050 ref repeat num: 2 ctg repeat num: 1 dupSeqStrandOnRef: [+, +] dupSeqStrandOnCtg: [+] precise cigarStringsForDupSeqOnCtg: , DEL, [CONTRACTION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[7](21:17000040-17000040 21:17000040-17000040 NO_SWITCH homology: inserted sequence: tandem duplication repeat unit ref span: 21:17000041-17000050 ref repeat num: 1 ctg repeat num: 2 dupSeqStrandOnRef: [+] dupSeqStrandOnCtg: [+, +] precise cigarStringsForDupSeqOnCtg: [10M, 10M], DUP, [EXPANSION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0.001s |
passed |
| testInferSimpleTypeFromNovelAdjacency[8](21:25297163-25297163 21:25297163-25297163 NO_SWITCH homology: inserted sequence: CTCTCTCTCT tandem duplication repeat unit ref span: 21:25297164-25297252 ref repeat num: 1 ctg repeat num: 2 dupSeqStrandOnRef: [+] dupSeqStrandOnCtg: [+, +] precise cigarStringsForDupSeqOnCtg: [89M, 89M], DUP, [EXPANSION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |
| testInferSimpleTypeFromNovelAdjacency[9](20:312609-312609 20:312609-312609 NO_SWITCH homology: GGGCAGCTGTGGA inserted sequence: tandem duplication repeat unit ref span: 20:312610-312705 ref repeat num: 1 ctg repeat num: 2 dupSeqStrandOnRef: [+] dupSeqStrandOnCtg: [+, +] imprecise:, DUP, [EXPANSION], org.broadinstitute.hellbender.engine.spark.datasources.ReferenceMultiSparkSource@1f97ea36) |
0s |
passed |