| Test |
Duration |
Result |
| testBasicInfoCtor[0]((unmapped, []), null, class org.broadinstitute.hellbender.exceptions.GATKException) |
0s |
passed |
| testBasicInfoCtor[1]((asm002428:tig00000, [1_255_chr2:4452399-4452641_-_113M15I52M3D75M2250H_60_25_157_O, 374_440_chr9:34840411-34840477_-_373H67M2065H_33_2_57_O, 556_598_chr6:15853372-15853414_-_555H43M1907H_60_0_43_O, 653_712_chr2:4452298-4452357_-_652H60M1793H_60_3_45_O, 1031_2505_chr2:4450935-4452406_-_1030S256M3I1216M_60_7_1433_O]), primary chr: chr2 strand rep:- alpha: chr2:4450935-4450935 omega: chr2:4452641-4452641, null) |
0s |
passed |
| testBasicInfoCtor[2]((asm002548:tig00001, [1_260_chr2:16225125-16225384_-_260M887H_60_0_260_O, 268_490_chr2:16226497-16226720_-_267H53M1D170M657H_60_14_141_O, 519_632_chr2:16225125-16225237_+_518H29M1I84M515H_60_7_66_O, 635_1147_chr2:16224630-16225142_-_634S513M_60_0_513_O]), primary chr: chr2 strand rep:- alpha: chr2:16224630-16224630 omega: chr2:16225384-16225384, null) |
0s |
passed |
| testBasicInfoCtor[3]((asm030077:tig00001, [1_791_chrX:30792651-30793441_+_791M4027S_60_-1_-1_S, 870_2181_chrX:30793442-30794753_+_869S1312M2637S_60_-1_-1_S, 2278_2887_chrX:30794754-30795363_+_2277S610M1931S_60_-1_-1_S, 2888_3016_chrX:30795415-30795543_+_2887S129M1802S_60_-1_-1_S, 3246_3345_chrX:30794688-30794787_+_3245H100M1473H_60_10_50_O, 3427_3509_chrX:30789491-30789573_+_3426H83M1309H_22_5_58_O, 3550_3650_chrX:30796147-30796247_+_3549H101M54S1114H_60_-1_-1_H, 3651_4818_chrX:30795360-30796527_+_3650H1168M_60_0_1168_O]), primary chr: chrX strand rep:+ alpha: chrX:30792651-30792651 omega: chrX:30796527-30796527, null) |
0s |
passed |
| testBasicInfoCtor[4]((asm022672:tig00004, [1_1430_chr9:130955309-130956738_-_1430M2216S_60_-1_-1_S, 1587_1763_chr9:130955156-130955308_-_1586S54M24I99M1883S_60_-1_-1_S, 1824_2015_chr9:130954964-130955155_-_1823S192M1631S_60_-1_-1_S, 2164_3646_chr9:130953867-130955307_-_2163H167M42I1274M_60_55_1318_O]), primary chr: chr9 strand rep:- alpha: chr9:130953867-130953867 omega: chr9:130956738-130956738, null) |
0s |
passed |
| testBasicInfoCtor[5]((asm028558:tig00002, [1_1104_chr20:51739457-51740560_+_1104M1918H_60_1_1099_O, 1105_1156_chr18:11642876-11642927_-_1100H4S52M1866H_60_-1_-1_H, 1654_3022_chr20:51740561-51741929_+_1653S1369M_60_0_1369_O]), primary chr: chr20 strand rep:+ alpha: chr20:51739457-51739457 omega: chr20:51741929-51741929, null) |
0s |
passed |
| testExtractJumpsOnReference[0]([chr2,4452399,-,2250H75M3D52M15I113M,60,25,157, chr9,34840411,-,2065H67M373H,33,2,57, chr6,15853372,-,1907H43M555H,60,0,43, chr2,4452298,-,1793H60M652H,60,3,45, chr2,4450935,-,1216M3I256M1030S,60,7,1433], [Jump start: chr2:4452399-4452399 jump landing: chr9:34840477-34840477 NO_SWITCH G, Jump start: chr9:34840411-34840411 jump landing: chr6:15853414-15853414 NO_SWITCH G, Jump start: chr6:15853372-15853372 jump landing: chr2:4452357-4452357 NO_SWITCH G, Jump start: chr2:4452298-4452298 jump landing: chr2:4452406-4452406 NO_SWITCH G]) |
0s |
passed |
| testExtractJumpsOnReference[1]([chr2,16225125,-,887H260M,60,0,260, chr2,16226497,-,657H170M1D53M267H,60,14,141, chr2,16225125,+,518H29M1I84M515H,60,7,66, chr2,16224630,-,513M634S,60,0,513], [Jump start: chr2:16225125-16225125 jump landing: chr2:16226720-16226720 NO_SWITCH G, Jump start: chr2:16226497-16226497 jump landing: chr2:16225125-16225125 REVERSE_TO_FORWARD G, Jump start: chr2:16225237-16225237 jump landing: chr2:16225142-16225142 FORWARD_TO_REVERSE G]) |
0s |
passed |
| testExtractJumpsOnReference[2]([chrX,30792651,+,791M4027S,60, chrX,30793442,+,869S1312M2637S,60, chrX,30794754,+,2277S610M1931S,60, chrX,30795415,+,2887S129M1802S,60, chrX,30794688,+,3245H100M1473H,60,10,50, chrX,30789491,+,3426H83M1309H,22,5,58, chrX,30796147,+,3549H101M54S1114H,60, chrX,30795360,+,3650H1168M,60,0,1168], [Jump start: chrX:30793441-30793441 jump landing: chrX:30793442-30793442 NO_SWITCH G, Jump start: chrX:30794753-30794753 jump landing: chrX:30794754-30794754 NO_SWITCH G, Jump start: chrX:30795363-30795363 jump landing: chrX:30795415-30795415 NO_SWITCH C, Jump start: chrX:30795543-30795543 jump landing: chrX:30794688-30794688 NO_SWITCH G, Jump start: chrX:30794787-30794787 jump landing: chrX:30789491-30789491 NO_SWITCH G, Jump start: chrX:30789573-30789573 jump landing: chrX:30796147-30796147 NO_SWITCH G, Jump start: chrX:30796247-30796247 jump landing: chrX:30795360-30795360 NO_SWITCH C]) |
0s |
passed |
| testExtractJumpsOnReference[3]([chr9,130955309,-,2216S1430M,60, chr9,130955156,-,1883S99M24I54M1586S,60, chr9,130954964,-,1631S192M1823S,60, chr9,130953867,-,1274M42I167M2163H,60,55,1318], [Jump start: chr9:130955309-130955309 jump landing: chr9:130955308-130955308 NO_SWITCH G, Jump start: chr9:130955156-130955156 jump landing: chr9:130955155-130955155 NO_SWITCH G, Jump start: chr9:130954964-130954964 jump landing: chr9:130955307-130955307 NO_SWITCH G]) |
0s |
passed |
| testExtractJumpsOnReference[4]([chr20,51739457,+,1104M1918H,60,1,1099, chr18,11642876,-,1866H52M4S1100H,60, chr20,51740561,+,1653S1369M,60,0,1369], [Jump start: chr20:51740560-51740560 jump landing: chr18:11642927-11642927 FORWARD_TO_REVERSE C, Jump start: chr18:11642876-11642876 jump landing: chr20:51740561-51740561 REVERSE_TO_FORWARD G]) |
0.001s |
passed |
| testExtractSegmentingRefLocationsOnEventPrimaryChromosome[0]([Jump start: chr2:4452399-4452399 jump landing: chr9:34840477-34840477 NO_SWITCH G, Jump start: chr9:34840411-34840411 jump landing: chr6:15853414-15853414 NO_SWITCH G, Jump start: chr6:15853372-15853372 jump landing: chr2:4452357-4452357 NO_SWITCH G, Jump start: chr2:4452298-4452298 jump landing: chr2:4452406-4452406 NO_SWITCH G], primary chr: chr2 strand rep:- alpha: chr2:4450935-4450935 omega: chr2:4452641-4452641, [chr2:4452298-4452298, chr2:4452357-4452357, chr2:4452399-4452399, chr2:4452406-4452406]) |
0s |
passed |
| testExtractSegmentingRefLocationsOnEventPrimaryChromosome[1]([Jump start: chr2:16225125-16225125 jump landing: chr2:16226720-16226720 NO_SWITCH G, Jump start: chr2:16226497-16226497 jump landing: chr2:16225125-16225125 REVERSE_TO_FORWARD G, Jump start: chr2:16225237-16225237 jump landing: chr2:16225142-16225142 FORWARD_TO_REVERSE G], primary chr: chr2 strand rep:- alpha: chr2:16224630-16224630 omega: chr2:16225384-16225384, [chr2:16225125-16225125, chr2:16225142-16225142, chr2:16225237-16225237]) |
0s |
passed |
| testExtractSegmentingRefLocationsOnEventPrimaryChromosome[2]([Jump start: chrX:30793441-30793441 jump landing: chrX:30793442-30793442 NO_SWITCH G, Jump start: chrX:30794753-30794753 jump landing: chrX:30794754-30794754 NO_SWITCH G, Jump start: chrX:30795363-30795363 jump landing: chrX:30795415-30795415 NO_SWITCH C, Jump start: chrX:30795543-30795543 jump landing: chrX:30794688-30794688 NO_SWITCH G, Jump start: chrX:30794787-30794787 jump landing: chrX:30789491-30789491 NO_SWITCH G, Jump start: chrX:30789573-30789573 jump landing: chrX:30796147-30796147 NO_SWITCH G, Jump start: chrX:30796247-30796247 jump landing: chrX:30795360-30795360 NO_SWITCH C], primary chr: chrX strand rep:+ alpha: chrX:30792651-30792651 omega: chrX:30796527-30796527, [chrX:30793441-30793441, chrX:30793442-30793442, chrX:30794688-30794688, chrX:30794753-30794753, chrX:30794754-30794754, chrX:30794787-30794787, chrX:30795360-30795360, chrX:30795363-30795363, chrX:30795415-30795415, chrX:30795543-30795543, chrX:30796147-30796147, chrX:30796247-30796247]) |
0s |
passed |
| testExtractSegmentingRefLocationsOnEventPrimaryChromosome[3]([Jump start: chr9:130955309-130955309 jump landing: chr9:130955308-130955308 NO_SWITCH G, Jump start: chr9:130955156-130955156 jump landing: chr9:130955155-130955155 NO_SWITCH G, Jump start: chr9:130954964-130954964 jump landing: chr9:130955307-130955307 NO_SWITCH G], primary chr: chr9 strand rep:- alpha: chr9:130953867-130953867 omega: chr9:130956738-130956738, [chr9:130954964-130954964, chr9:130955155-130955155, chr9:130955156-130955156, chr9:130955307-130955307, chr9:130955308-130955308, chr9:130955309-130955309]) |
0s |
passed |
| testExtractSegmentingRefLocationsOnEventPrimaryChromosome[4]([Jump start: chr20:51740560-51740560 jump landing: chr18:11642927-11642927 FORWARD_TO_REVERSE C, Jump start: chr18:11642876-11642876 jump landing: chr20:51740561-51740561 REVERSE_TO_FORWARD G], primary chr: chr20 strand rep:+ alpha: chr20:51739457-51739457 omega: chr20:51741929-51741929, [chr20:51740560-51740560, chr20:51740561-51740561]) |
0s |
passed |
| testGetAlignmentsBoundedBySegmentingLocations[0](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm002428:tig00000, [1_255_chr2:4452399-4452641_-_113M15I52M3D75M2250H_60_25_157_O, 374_440_chr9:34840411-34840477_-_373H67M2065H_33_2_57_O, 556_598_chr6:15853372-15853414_-_555H43M1907H_60_0_43_O, 653_712_chr2:4452298-4452357_-_652H60M1793H_60_3_45_O, 1031_2505_chr2:4450935-4452406_-_1030S256M3I1216M_60_7_1433_O]), insertionMappings=[604_654_chr10:75714830-75714880_-_603H51M1851H_0_0_51_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr2 strand rep:- alpha: chr2:4450935-4450935 omega: chr2:4452641-4452641, jumps=[Jump start: chr2:4452399-4452399 jump landing: chr9:34840477-34840477 NO_SWITCH G, Jump start: chr9:34840411-34840411 jump landing: chr6:15853414-15853414 NO_SWITCH G, Jump start: chr6:15853372-15853372 jump landing: chr2:4452357-4452357 NO_SWITCH G, Jump start: chr2:4452298-4452298 jump landing: chr2:4452406-4452406 NO_SWITCH G], eventPrimaryChromosomeSegmentingLocations=[chr2:4452298-4452298, chr2:4452357-4452357, chr2:4452399-4452399, chr2:4452406-4452406]}, [chr2:4452640-4452641, chr2:4452356-4452357, chr2:4452399-4452400, chr2:4452405-4452406, chr2:4452298-4452299, chr2:4450935-4450936]) |
0s |
passed |
| testGetAlignmentsBoundedBySegmentingLocations[1](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm002548:tig00001, [1_260_chr2:16225125-16225384_-_260M887H_60_0_260_O, 268_490_chr2:16226497-16226720_-_267H53M1D170M657H_60_14_141_O, 519_632_chr2:16225125-16225237_+_518H29M1I84M515H_60_7_66_O, 635_1147_chr2:16224630-16225142_-_634S513M_60_0_513_O]), insertionMappings=[], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr2 strand rep:- alpha: chr2:16224630-16224630 omega: chr2:16225384-16225384, jumps=[Jump start: chr2:16225125-16225125 jump landing: chr2:16226720-16226720 NO_SWITCH G, Jump start: chr2:16226497-16226497 jump landing: chr2:16225125-16225125 REVERSE_TO_FORWARD G, Jump start: chr2:16225237-16225237 jump landing: chr2:16225142-16225142 FORWARD_TO_REVERSE G], eventPrimaryChromosomeSegmentingLocations=[chr2:16225125-16225125, chr2:16225142-16225142, chr2:16225237-16225237]}, [chr2:16225383-16225384, chr2:16225125-16225126, chr2:16225141-16225142, chr2:16224630-16224631, chr2:16225236-16225237]) |
0s |
passed |
| testGetAlignmentsBoundedBySegmentingLocations[2](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm030077:tig00001, [1_791_chrX:30792651-30793441_+_791M4027S_60_-1_-1_S, 870_2181_chrX:30793442-30794753_+_869S1312M2637S_60_-1_-1_S, 2278_2887_chrX:30794754-30795363_+_2277S610M1931S_60_-1_-1_S, 2888_3016_chrX:30795415-30795543_+_2887S129M1802S_60_-1_-1_S, 3246_3345_chrX:30794688-30794787_+_3245H100M1473H_60_10_50_O, 3427_3509_chrX:30789491-30789573_+_3426H83M1309H_22_5_58_O, 3550_3650_chrX:30796147-30796247_+_3549H101M54S1114H_60_-1_-1_H, 3651_4818_chrX:30795360-30796527_+_3650H1168M_60_0_1168_O]), insertionMappings=[], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chrX strand rep:+ alpha: chrX:30792651-30792651 omega: chrX:30796527-30796527, jumps=[Jump start: chrX:30793441-30793441 jump landing: chrX:30793442-30793442 NO_SWITCH G, Jump start: chrX:30794753-30794753 jump landing: chrX:30794754-30794754 NO_SWITCH G, Jump start: chrX:30795363-30795363 jump landing: chrX:30795415-30795415 NO_SWITCH C, Jump start: chrX:30795543-30795543 jump landing: chrX:30794688-30794688 NO_SWITCH G, Jump start: chrX:30794787-30794787 jump landing: chrX:30789491-30789491 NO_SWITCH G, Jump start: chrX:30789573-30789573 jump landing: chrX:30796147-30796147 NO_SWITCH G, Jump start: chrX:30796247-30796247 jump landing: chrX:30795360-30795360 NO_SWITCH C], eventPrimaryChromosomeSegmentingLocations=[chrX:30793441-30793441, chrX:30793442-30793442, chrX:30794688-30794688, chrX:30794753-30794753, chrX:30794754-30794754, chrX:30794787-30794787, chrX:30795360-30795360, chrX:30795363-30795363, chrX:30795415-30795415, chrX:30795543-30795543, chrX:30796147-30796147, chrX:30796247-30796247]}, [chrX:30795362-30795363, chrX:30795360-30795361, chrX:30793440-30793441, chrX:30793442-30793443, chrX:30795542-30795543, chrX:30795415-30795416, chrX:30792651-30792652, chrX:30794752-30794753, chrX:30794754-30794755, chrX:30794786-30794787, chrX:30794688-30794689, chrX:30796246-30796247, chrX:30796526-30796527, chrX:30796147-30796148]) |
0s |
passed |
| testGetAlignmentsBoundedBySegmentingLocations[3](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm022672:tig00004, [1_1430_chr9:130955309-130956738_-_1430M2216S_60_-1_-1_S, 1587_1763_chr9:130955156-130955308_-_1586S54M24I99M1883S_60_-1_-1_S, 1824_2015_chr9:130954964-130955155_-_1823S192M1631S_60_-1_-1_S, 2164_3646_chr9:130953867-130955307_-_2163H167M42I1274M_60_55_1318_O]), insertionMappings=[1963_2177_chr9:130955093-130955304_-_1962H179M3I33M1469H_19_14_138_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr9 strand rep:- alpha: chr9:130953867-130953867 omega: chr9:130956738-130956738, jumps=[Jump start: chr9:130955309-130955309 jump landing: chr9:130955308-130955308 NO_SWITCH G, Jump start: chr9:130955156-130955156 jump landing: chr9:130955155-130955155 NO_SWITCH G, Jump start: chr9:130954964-130954964 jump landing: chr9:130955307-130955307 NO_SWITCH G], eventPrimaryChromosomeSegmentingLocations=[chr9:130954964-130954964, chr9:130955155-130955155, chr9:130955156-130955156, chr9:130955307-130955307, chr9:130955308-130955308, chr9:130955309-130955309]}, [chr9:130955309-130955310, chr9:130955307-130955308, chr9:130955306-130955307, chr9:130956737-130956738, chr9:130954964-130954965, chr9:130953867-130953868, chr9:130955156-130955157, chr9:130955154-130955155]) |
0.001s |
passed |
| testGetAlignmentsBoundedBySegmentingLocations[4](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm028558:tig00002, [1_1104_chr20:51739457-51740560_+_1104M1918H_60_1_1099_O, 1105_1156_chr18:11642876-11642927_-_1100H4S52M1866H_60_-1_-1_H, 1654_3022_chr20:51740561-51741929_+_1653S1369M_60_0_1369_O]), insertionMappings=[1130_1404_chr14:82163062-82163336_+_1129H275M1618H_5_25_150_O, 1391_1531_chr19:10120394-10120534_+_1390H141M1491H_0_11_86_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr20 strand rep:+ alpha: chr20:51739457-51739457 omega: chr20:51741929-51741929, jumps=[Jump start: chr20:51740560-51740560 jump landing: chr18:11642927-11642927 FORWARD_TO_REVERSE C, Jump start: chr18:11642876-11642876 jump landing: chr20:51740561-51740561 REVERSE_TO_FORWARD G], eventPrimaryChromosomeSegmentingLocations=[chr20:51740560-51740560, chr20:51740561-51740561]}, [chr20:51740559-51740560, chr20:51740561-51740562, chr20:51739457-51739458, chr20:51741928-51741929]) |
0s |
passed |
| testJumpCtor[0](chr17,82596440,+,109M142H,60,1,104, chr17,82596480,+,106S145M,60,0,145, null, class java.lang.IllegalArgumentException) |
0s |
passed |
| testJumpCtor[10](chrX,30794754,+,2277S610M1931S,60, chrX,30795415,+,2887S129M1802S,60, Jump start: chrX:30795363-30795363 jump landing: chrX:30795415-30795415 NO_SWITCH C, null) |
0s |
passed |
| testJumpCtor[11](chrX,30795415,+,2887S129M1802S,60, chrX,30794688,+,3245H100M1473H,60,10,50, Jump start: chrX:30795543-30795543 jump landing: chrX:30794688-30794688 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[12](chrX,30794688,+,3245H100M1473H,60,10,50, chrX,30789491,+,3426H83M1309H,22,5,58, Jump start: chrX:30794787-30794787 jump landing: chrX:30789491-30789491 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[13](chrX,30789491,+,3426H83M1309H,22,5,58, chrX,30796147,+,3549H101M54S1114H,60, Jump start: chrX:30789573-30789573 jump landing: chrX:30796147-30796147 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[14](chrX,30796147,+,3549H101M54S1114H,60, chrX,30795360,+,3650H1168M,60,0,1168, Jump start: chrX:30796247-30796247 jump landing: chrX:30795360-30795360 NO_SWITCH C, null) |
0s |
passed |
| testJumpCtor[15](chr9,130955309,-,2216S1430M,60, chr9,130955156,-,1883S99M24I54M1586S,60, Jump start: chr9:130955309-130955309 jump landing: chr9:130955308-130955308 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[16](chr9,130955156,-,1883S99M24I54M1586S,60, chr9,130954964,-,1631S192M1823S,60, Jump start: chr9:130955156-130955156 jump landing: chr9:130955155-130955155 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[17](chr9,130954964,-,1631S192M1823S,60, chr9,130953867,-,1274M42I167M2163H,60,55,1318, Jump start: chr9:130954964-130954964 jump landing: chr9:130955307-130955307 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[18](chr20,51739457,+,1104M1918H,60,1,1099, chr18,11642876,-,1866H52M4S1100H,60, Jump start: chr20:51740560-51740560 jump landing: chr18:11642927-11642927 FORWARD_TO_REVERSE C, null) |
0s |
passed |
| testJumpCtor[19](chr18,11642876,-,1866H52M4S1100H,60, chr20,51740561,+,1653S1369M,60,0,1369, Jump start: chr18:11642876-11642876 jump landing: chr20:51740561-51740561 REVERSE_TO_FORWARD G, null) |
0s |
passed |
| testJumpCtor[1](chr2,4452399,-,2250H75M3D52M15I113M,60,25,157, chr9,34840411,-,2065H67M373H,33,2,57, Jump start: chr2:4452399-4452399 jump landing: chr9:34840477-34840477 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[2](chr9,34840411,-,2065H67M373H,33,2,57, chr6,15853372,-,1907H43M555H,60,0,43, Jump start: chr9:34840411-34840411 jump landing: chr6:15853414-15853414 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[3](chr6,15853372,-,1907H43M555H,60,0,43, chr2,4452298,-,1793H60M652H,60,3,45, Jump start: chr6:15853372-15853372 jump landing: chr2:4452357-4452357 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[4](chr2,4452298,-,1793H60M652H,60,3,45, chr2,4450935,-,1216M3I256M1030S,60,7,1433, Jump start: chr2:4452298-4452298 jump landing: chr2:4452406-4452406 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[5](chr2,16225125,-,887H260M,60,0,260, chr2,16226497,-,657H170M1D53M267H,60,14,141, Jump start: chr2:16225125-16225125 jump landing: chr2:16226720-16226720 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[6](chr2,16226497,-,657H170M1D53M267H,60,14,141, chr2,16225125,+,518H29M1I84M515H,60,7,66, Jump start: chr2:16226497-16226497 jump landing: chr2:16225125-16225125 REVERSE_TO_FORWARD G, null) |
0s |
passed |
| testJumpCtor[7](chr2,16225125,+,518H29M1I84M515H,60,7,66, chr2,16224630,-,513M634S,60,0,513, Jump start: chr2:16225237-16225237 jump landing: chr2:16225142-16225142 FORWARD_TO_REVERSE G, null) |
0s |
passed |
| testJumpCtor[8](chrX,30792651,+,791M4027S,60, chrX,30793442,+,869S1312M2637S,60, Jump start: chrX:30793441-30793441 jump landing: chrX:30793442-30793442 NO_SWITCH G, null) |
0s |
passed |
| testJumpCtor[9](chrX,30793442,+,869S1312M2637S,60, chrX,30794754,+,2277S610M1931S,60, Jump start: chrX:30794753-30794753 jump landing: chrX:30794754-30794754 NO_SWITCH G, null) |
0s |
passed |
| testSerialization[0](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm002428:tig00000, [1_255_chr2:4452399-4452641_-_113M15I52M3D75M2250H_60_25_157_O, 374_440_chr9:34840411-34840477_-_373H67M2065H_33_2_57_O, 556_598_chr6:15853372-15853414_-_555H43M1907H_60_0_43_O, 653_712_chr2:4452298-4452357_-_652H60M1793H_60_3_45_O, 1031_2505_chr2:4450935-4452406_-_1030S256M3I1216M_60_7_1433_O]), insertionMappings=[604_654_chr10:75714830-75714880_-_603H51M1851H_0_0_51_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr2 strand rep:- alpha: chr2:4450935-4450935 omega: chr2:4452641-4452641, jumps=[Jump start: chr2:4452399-4452399 jump landing: chr9:34840477-34840477 NO_SWITCH G, Jump start: chr9:34840411-34840411 jump landing: chr6:15853414-15853414 NO_SWITCH G, Jump start: chr6:15853372-15853372 jump landing: chr2:4452357-4452357 NO_SWITCH G, Jump start: chr2:4452298-4452298 jump landing: chr2:4452406-4452406 NO_SWITCH G], eventPrimaryChromosomeSegmentingLocations=[chr2:4452298-4452298, chr2:4452357-4452357, chr2:4452399-4452399, chr2:4452406-4452406]}) |
0.001s |
passed |
| testSerialization[1](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm002548:tig00001, [1_260_chr2:16225125-16225384_-_260M887H_60_0_260_O, 268_490_chr2:16226497-16226720_-_267H53M1D170M657H_60_14_141_O, 519_632_chr2:16225125-16225237_+_518H29M1I84M515H_60_7_66_O, 635_1147_chr2:16224630-16225142_-_634S513M_60_0_513_O]), insertionMappings=[], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr2 strand rep:- alpha: chr2:16224630-16224630 omega: chr2:16225384-16225384, jumps=[Jump start: chr2:16225125-16225125 jump landing: chr2:16226720-16226720 NO_SWITCH G, Jump start: chr2:16226497-16226497 jump landing: chr2:16225125-16225125 REVERSE_TO_FORWARD G, Jump start: chr2:16225237-16225237 jump landing: chr2:16225142-16225142 FORWARD_TO_REVERSE G], eventPrimaryChromosomeSegmentingLocations=[chr2:16225125-16225125, chr2:16225142-16225142, chr2:16225237-16225237]}) |
0s |
passed |
| testSerialization[2](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm030077:tig00001, [1_791_chrX:30792651-30793441_+_791M4027S_60_-1_-1_S, 870_2181_chrX:30793442-30794753_+_869S1312M2637S_60_-1_-1_S, 2278_2887_chrX:30794754-30795363_+_2277S610M1931S_60_-1_-1_S, 2888_3016_chrX:30795415-30795543_+_2887S129M1802S_60_-1_-1_S, 3246_3345_chrX:30794688-30794787_+_3245H100M1473H_60_10_50_O, 3427_3509_chrX:30789491-30789573_+_3426H83M1309H_22_5_58_O, 3550_3650_chrX:30796147-30796247_+_3549H101M54S1114H_60_-1_-1_H, 3651_4818_chrX:30795360-30796527_+_3650H1168M_60_0_1168_O]), insertionMappings=[], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chrX strand rep:+ alpha: chrX:30792651-30792651 omega: chrX:30796527-30796527, jumps=[Jump start: chrX:30793441-30793441 jump landing: chrX:30793442-30793442 NO_SWITCH G, Jump start: chrX:30794753-30794753 jump landing: chrX:30794754-30794754 NO_SWITCH G, Jump start: chrX:30795363-30795363 jump landing: chrX:30795415-30795415 NO_SWITCH C, Jump start: chrX:30795543-30795543 jump landing: chrX:30794688-30794688 NO_SWITCH G, Jump start: chrX:30794787-30794787 jump landing: chrX:30789491-30789491 NO_SWITCH G, Jump start: chrX:30789573-30789573 jump landing: chrX:30796147-30796147 NO_SWITCH G, Jump start: chrX:30796247-30796247 jump landing: chrX:30795360-30795360 NO_SWITCH C], eventPrimaryChromosomeSegmentingLocations=[chrX:30793441-30793441, chrX:30793442-30793442, chrX:30794688-30794688, chrX:30794753-30794753, chrX:30794754-30794754, chrX:30794787-30794787, chrX:30795360-30795360, chrX:30795363-30795363, chrX:30795415-30795415, chrX:30795543-30795543, chrX:30796147-30796147, chrX:30796247-30796247]}) |
0s |
passed |
| testSerialization[3](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm022672:tig00004, [1_1430_chr9:130955309-130956738_-_1430M2216S_60_-1_-1_S, 1587_1763_chr9:130955156-130955308_-_1586S54M24I99M1883S_60_-1_-1_S, 1824_2015_chr9:130954964-130955155_-_1823S192M1631S_60_-1_-1_S, 2164_3646_chr9:130953867-130955307_-_2163H167M42I1274M_60_55_1318_O]), insertionMappings=[1963_2177_chr9:130955093-130955304_-_1962H179M3I33M1469H_19_14_138_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr9 strand rep:- alpha: chr9:130953867-130953867 omega: chr9:130956738-130956738, jumps=[Jump start: chr9:130955309-130955309 jump landing: chr9:130955308-130955308 NO_SWITCH G, Jump start: chr9:130955156-130955156 jump landing: chr9:130955155-130955155 NO_SWITCH G, Jump start: chr9:130954964-130954964 jump landing: chr9:130955307-130955307 NO_SWITCH G], eventPrimaryChromosomeSegmentingLocations=[chr9:130954964-130954964, chr9:130955155-130955155, chr9:130955156-130955156, chr9:130955307-130955307, chr9:130955308-130955308, chr9:130955309-130955309]}) |
0.001s |
passed |
| testSerialization[4](CpxVariantInducingAssemblyContig{contigWithFineTunedAlignments=AssemblyContigWithFineTunedAlignments{sourceTig=(asm028558:tig00002, [1_1104_chr20:51739457-51740560_+_1104M1918H_60_1_1099_O, 1105_1156_chr18:11642876-11642927_-_1100H4S52M1866H_60_-1_-1_H, 1654_3022_chr20:51740561-51741929_+_1653S1369M_60_0_1369_O]), insertionMappings=[1130_1404_chr14:82163062-82163336_+_1129H275M1618H_5_25_150_O, 1391_1531_chr19:10120394-10120534_+_1390H141M1491H_0_11_86_O], hasEquallyGoodAlnConfigurations=false, saTAGForGoodMappingToNonCanonicalChromosome='NONE'}, basicInfo=primary chr: chr20 strand rep:+ alpha: chr20:51739457-51739457 omega: chr20:51741929-51741929, jumps=[Jump start: chr20:51740560-51740560 jump landing: chr18:11642927-11642927 FORWARD_TO_REVERSE C, Jump start: chr18:11642876-11642876 jump landing: chr20:51740561-51740561 REVERSE_TO_FORWARD G], eventPrimaryChromosomeSegmentingLocations=[chr20:51740560-51740560, chr20:51740561-51740561]}) |
0s |
passed |