Class org.broadinstitute.hellbender.tools.walkers.annotator.PossibleDeNovoUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > PossibleDeNovoUnitTest
67

tests
0

failures
0

ignored
0.028s

duration
100%

successful

Tests

Test Duration Result
testUsingVC[0]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0.002s passed
testUsingVC[10]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[11]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], false, false) 0s passed
testUsingVC[12]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0.001s passed
testUsingVC[13]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[14]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[15]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], [4 ./.], false, false) 0s passed
testUsingVC[16]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0.001s passed
testUsingVC[17]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[18]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[19]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], false, false) 0.001s passed
testUsingVC[1]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], true, false) 0.001s passed
testUsingVC[20]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[21]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[22]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[23]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], false, false) 0s passed
testUsingVC[24]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[25]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[26]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[27]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], false, false) 0.001s passed
testUsingVC[28]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[29]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[2]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[30]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[31]([1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], [4 ./.], false, false) 0.001s passed
testUsingVC[32]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[33]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[34]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[35]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], false, false) 0s passed
testUsingVC[36]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[37]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[38]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[39]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], false, false) 0.001s passed
testUsingVC[3]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], false, false) 0.001s passed
testUsingVC[40]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[41]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[42]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[43]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], false, false) 0s passed
testUsingVC[44]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[45]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[46]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[47]([3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], [4 ./.], false, false) 0s passed
testUsingVC[48]([4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[49]([4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[4]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0.002s passed
testUsingVC[50]([4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[51]([4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [4 ./.], false, false) 0s passed
testUsingVC[52]([4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[53]([4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0.001s passed
testUsingVC[54]([4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[55]([4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], false, false) 0s passed
testUsingVC[56]([4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[57]([4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[58]([4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[59]([4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [4 ./.], false, false) 0s passed
testUsingVC[5]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[60]([4 ./.], [4 ./.], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0s passed
testUsingVC[61]([4 ./.], [4 ./.], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed
testUsingVC[62]([4 ./.], [4 ./.], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0s passed
testUsingVC[63]([4 ./.], [4 ./.], [4 ./.], false, false) 0s passed
testUsingVC[64]([2 A*/A* GQ 30 DP 10], [1 A*/T GQ 30 DP 10], [3 T/T GQ 30 DP 10], false, false) 0.001s passed
testUsingVC[65]([2 A*/A* GQ 30 DP 10], [2 A*/A* GQ 30 DP 10], [1 A*/T GQ 30 DP 10], true, false) 0s passed
testUsingVC[66]([2 A*/A* GQ 45 DP 50 AD 10,0 PL 0,100,100], [2 A*/A* GQ 45 DP 50 AD 10,0 PL 0,100,100], [1 A*/T GQ 45 DP 50 AD 5,5 PL 100,0,100], true, true) 0s passed
testUsingVC[6]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], false, false) 0.001s passed
testUsingVC[7]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], [4 ./.], false, false) 0s passed
testUsingVC[8]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], false, false) 0.001s passed
testUsingVC[9]([2 A*/A* GQ 30 DP 10 AD 10,0 PL 0,100,100], [3 T/T GQ 30 DP 10 AD 0,10 PL 100,100,0], [1 A*/T GQ 30 DP 10 AD 5,5 PL 100,0,100], false, false) 0s passed

Standard error

20:33:32.142 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
20:33:32.142 DEBUG GenomeLocParser -  1 (16000 bp)
20:33:32.142 DEBUG GenomeLocParser -  2 (16000 bp)
20:33:32.142 DEBUG GenomeLocParser -  3 (16000 bp)
20:33:32.142 DEBUG GenomeLocParser -  4 (16000 bp)