Class org.broadinstitute.hellbender.tools.walkers.annotator.VariantOverlapAnnotatorUnitTest

all > org.broadinstitute.hellbender.tools.walkers.annotator > VariantOverlapAnnotatorUnitTest
193

tests
0

failures
0

ignored
0.571s

duration
100%

successful

Tests

Test Duration Result
testAnnotateOverlapsEmpty[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlapsEmpty[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlapsEmpty[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlapsEmpty[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsEmpty[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateOverlapsEmpty[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateOverlapsEmpty[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlapsEmpty[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateOverlapsEmpty[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateOverlapsEmpty[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlapsEmpty[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlapsEmpty[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlapsEmpty[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlapsFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.003s passed
testAnnotateOverlapsFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testAnnotateOverlapsFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testAnnotateOverlapsFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testAnnotateOverlapsFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testAnnotateOverlapsFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testAnnotateOverlapsFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.009s passed
testAnnotateOverlapsFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.006s passed
testAnnotateOverlapsFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testAnnotateOverlapsFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testAnnotateOverlapsFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testAnnotateOverlapsFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testAnnotateOverlapsFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.009s passed
testAnnotateOverlapsFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testAnnotateOverlapsFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testAnnotateOverlapsFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.008s passed
testAnnotateOverlapsFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.008s passed
testAnnotateOverlapsFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.007s passed
testAnnotateOverlapsFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.009s passed
testAnnotateOverlapsFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testAnnotateOverlapsFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.006s passed
testAnnotateOverlapsFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.006s passed
testAnnotateOverlapsFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.006s passed
testAnnotateOverlaps[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateOverlaps[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.001s passed
testAnnotateOverlaps[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateOverlaps[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateOverlaps[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.002s passed
testAnnotateOverlaps[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateOverlaps[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateOverlaps[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateOverlaps[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateOverlaps[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateOverlaps[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateOverlaps[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateOverlaps[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0s passed
testAnnotateOverlaps[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateOverlaps[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.001s passed
testAnnotateRsID[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0s passed
testAnnotateRsID[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateRsID[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.001s passed
testAnnotateRsID[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testAnnotateRsID[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0s passed
testAnnotateRsID[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.001s passed
testAnnotateRsID[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.001s passed
testAnnotateRsID[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0s passed
testAnnotateRsID[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0s passed
testAnnotateRsID[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0s passed
testAnnotateRsID[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0s passed
testAnnotateRsID[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0s passed
testAnnotateRsID[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.001s passed
testAnnotateRsID[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0s passed
testAnnotateRsID[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0s passed
testCreateWithSpecialNames 0s passed
testRsIDFeatureContextWith2Sets[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWith2Sets[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.005s passed
testRsIDFeatureContextWith2Sets[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.007s passed
testRsIDFeatureContextWith2Sets[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContextWith2Sets[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.007s passed
testRsIDFeatureContextWith2Sets[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWith2Sets[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.004s passed
testRsIDFeatureContextWith2Sets[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContextWith2Sets[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testRsIDFeatureContextWith2Sets[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWith2Sets[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testRsIDFeatureContextWithNoDBSnP[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.003s passed
testRsIDFeatureContextWithNoDBSnP[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.005s passed
testRsIDFeatureContextWithNoDBSnP[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContextWithNoDBSnP[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.005s passed
testRsIDFeatureContextWithNoDBSnP[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContextWithNoDBSnP[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.003s passed
testRsIDFeatureContext[0]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContext[10]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContext[11]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, true) 0.005s passed
testRsIDFeatureContext[12]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[13]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testRsIDFeatureContext[14]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.004s passed
testRsIDFeatureContext[15]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], rsID1;rsID3, true) 0.004s passed
testRsIDFeatureContext[16]([VC call @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, G] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[17]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=], rsID1;rsID2, true) 0.005s passed
testRsIDFeatureContext[18]([VC call @ 20:10 Q. of type=MIXED alleles=[T*, C, TAC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[T*, C] attr={} GT=[] filters=, [VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TAC, TATAC] attr={} GT=[] filters=], rsID2;rsID1, true) 0.004s passed
testRsIDFeatureContext[19]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[1]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], ., false) 0.013s passed
testRsIDFeatureContext[20]([VC call @ 20:10-28 Q. of type=INDEL alleles=[TTCCTCCTCCTCCTCCTCC*, T, TTCCTCCTCCTCCTCCTCCTCC] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTCC] attr={} GT=[] filters=], rsID1, true) 0.004s passed
testRsIDFeatureContext[21]([VC call @ 20:10-13 Q. of type=INDEL alleles=[TTTT*, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[22]([VC call @ 20:10 Q. of type=INDEL alleles=[T*, TTTT] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=INDEL alleles=[T*, TTTTTT] attr={} GT=[] filters=, [VC DBSNP @ 20:10-15 Q. of type=INDEL alleles=[TTTTTT*, T, TTTTTTTTTTT] attr={} GT=[] filters=], ., false) 0.004s passed
testRsIDFeatureContext[23]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=FAIL], ., false) 0.004s passed
testRsIDFeatureContext[2]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], foo;rsID1, true) 0.007s passed
testRsIDFeatureContext[3]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], foo, false) 0.005s passed
testRsIDFeatureContext[4]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContext[5]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID1, false) 0.006s passed
testRsIDFeatureContext[6]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C] attr={} GT=[] filters=], rsID1, true) 0.006s passed
testRsIDFeatureContext[7]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, T] attr={} GT=[] filters=], rsID2, true) 0.007s passed
testRsIDFeatureContext[8]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, G] attr={} GT=[] filters=], ., false) 0.005s passed
testRsIDFeatureContext[9]([VC call @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=, [[VC DBSNP @ 20:10 Q. of type=SNP alleles=[A*, C, T] attr={} GT=[] filters=], rsID1;rsID2, true) 0.006s passed

Standard error

20:33:32.896 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
20:33:32.896 DEBUG GenomeLocParser -  1 (16000 bp)
20:33:32.896 DEBUG GenomeLocParser -  2 (16000 bp)
20:33:32.896 DEBUG GenomeLocParser -  3 (16000 bp)
20:33:32.896 DEBUG GenomeLocParser -  4 (16000 bp)
20:33:32.914 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.917 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.922 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.926 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.930 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.934 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.938 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.941 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.946 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.949 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.952 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.958 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.962 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.965 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.968 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.971 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.974 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.977 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.980 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.982 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.986 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.988 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.991 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.994 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.997 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:32.999 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.002 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.004 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.007 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.009 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.012 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.014 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.017 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.018 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.021 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.023 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.025 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.027 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.030 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.032 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.035 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.037 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.039 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.041 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.043 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.045 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.047 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.049 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.052 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.053 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.056 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.058 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.061 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.062 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.064 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.066 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.068 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.070 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.072 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.074 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.076 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.078 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.080 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.082 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.084 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.086 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.089 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.090 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.093 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.094 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.096 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.098 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.100 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.102 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.104 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.105 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.108 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.109 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.111 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.113 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.115 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.117 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.120 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.121 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.123 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.125 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.127 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.129 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.131 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.132 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.135 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.137 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.140 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.142 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.144 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.146 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.157 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.159 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.169 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.172 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.177 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.180 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.184 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.186 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.189 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.192 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.195 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.197 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.201 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.203 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.207 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.210 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.214 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.216 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.219 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.221 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.224 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.226 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.229 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.231 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.234 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.235 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.238 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.240 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.242 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.244 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.247 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.248 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.251 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.253 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.256 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.257 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.260 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.262 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.264 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.266 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.268 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.270 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.273 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.275 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.277 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.279 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.281 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.283 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.286 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.288 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.290 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.292 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.294 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.296 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.298 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.300 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.305 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.307 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.310 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.311 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.314 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.316 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.319 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.320 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.323 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.324 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.327 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.329 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.331 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.333 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.335 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.337 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.339 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.341 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.344 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.345 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.348 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.349 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.352 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.354 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.356 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.358 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.360 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.362 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.364 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.366 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.368 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.370 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.372 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.374 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.380 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.382 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.384 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.386 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.388 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.390 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.393 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.394 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.397 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.398 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.401 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.402 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.405 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.407 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.410 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.412 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.415 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.417 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.419 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.421 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.424 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.425 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.428 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.430 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.432 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.433 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.436 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.437 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.439 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.441 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.443 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.445 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.447 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.449 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.451 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.453 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.455 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.457 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.459 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.460 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.463 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.464 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.466 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.468 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.470 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.471 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.474 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.475 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.478 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.479 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.481 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.483 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.485 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf
20:33:33.487 INFO  FeatureManager - Using codec VCFCodec to read file file:///gatkCloneMountPoint/src/test/resources/Homo_sapiens_assembly19.dbsnp135.chr1_1M.exome_intervals.vcf