| Test |
Duration |
Result |
| testGetAlignmentIntervals[0](splicedRead 1:100-309, true, [1:100-109 + ., 1:145-235 + ., 1:258-292 + ., 1:298-309 + ., 1:400-449 + ., 1:475-574 + .]) |
0.003s |
passed |
| testGetAlignmentIntervals[1](splicedRead 1:400-574, true, [1:100-109 + ., 1:145-235 + ., 1:258-292 + ., 1:298-309 + ., 1:400-449 + ., 1:475-574 + .]) |
0s |
passed |
| testGetAlignmentIntervals[2](splicedRead 1:100-309, true, [1:100-109 + ., 1:145-235 + ., 1:258-292 + ., 1:298-309 + .]) |
0s |
passed |
| testGetAlignmentIntervals[3](splicedRead 1:400-574, true, [1:400-449 + ., 1:475-574 + .]) |
0s |
passed |
| testGetAlignmentIntervals[4](splicedRead 1:100-309, true, [1:100-109 + ., 1:145-235 + ., 1:258-292 + ., 1:298-349 + ., 1:375-474 + .]) |
0s |
passed |
| testGetAlignmentIntervals[5](splicedRead 1:300-474, true, [1:100-109 + ., 1:145-235 + ., 1:258-292 + ., 1:298-349 + ., 1:375-474 + .]) |
0s |
passed |
| testGetAlignmentIntervals[6](unsplicedRead 1:100-249, false, [1:100-449 + .]) |
0s |
passed |
| testGetAlignmentIntervals[7](unsplicedRead 1:300-449, false, [1:100-449 + .]) |
0s |
passed |
| testGetAlignmentIntervals[8](unsplicedRead 1:100-249, false, [1:100-249 + .]) |
0s |
passed |
| testGetAlignmentIntervals[9](unsplicedRead 1:300-449, false, [1:300-449 + .]) |
0s |
passed |
| testInGoodPair |
0s |
passed |
| testMultiMapMethod[0](IGNORE, 1, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}) |
0.001s |
passed |
| testMultiMapMethod[1](IGNORE, 3, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {}) |
0s |
passed |
| testMultiMapMethod[2](IGNORE, 7, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {}) |
0s |
passed |
| testMultiMapMethod[3](EQUAL, 1, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}) |
0s |
passed |
| testMultiMapMethod[4](EQUAL, 3, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=1275.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=5.222222222222222, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=4.428571428571429}) |
0s |
passed |
| testMultiMapMethod[5](EQUAL, 7, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=3826.5, htsjdk.tribble.gff.Gff3BaseData@30a7b722=15.666666666666666, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=13.285714285714286}, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=546.6428571428571, htsjdk.tribble.gff.Gff3BaseData@30a7b722=2.238095238095238, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=1.8979591836734695}) |
0.001s |
passed |
| testMultiOverlapMethod[0](EQUAL, [theContig:20-75 + ., theContig:325-340 + ., theContig:700-750 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {}) |
0.001s |
passed |
| testMultiOverlapMethod[1](PROPORTIONAL, [theContig:20-75 + ., theContig:325-340 + ., theContig:700-750 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {}) |
0.001s |
passed |
| testMultiOverlapMethod[2](EQUAL, [theContig:325-375 + ., theContig:440-460 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@30a7b722=1.0}) |
0s |
passed |
| testMultiOverlapMethod[3](PROPORTIONAL, [theContig:325-375 + ., theContig:440-460 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@30a7b722=0.5138888888888888}) |
0.001s |
passed |
| testMultiOverlapMethod[4](EQUAL, [theContig:125-200 + ., theContig:400-410 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@30a7b722=0.5, htsjdk.tribble.gff.Gff3BaseData@a2b3c830=0.5}) |
0s |
passed |
| testMultiOverlapMethod[5](PROPORTIONAL, [theContig:125-200 + ., theContig:400-410 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@30a7b722=0.4161073825503356, htsjdk.tribble.gff.Gff3BaseData@a2b3c830=0.5838926174496645}) |
0s |
passed |
| testMultiOverlapMethod[6](EQUAL, [theContig:175-250 + ., theContig:400-525 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=0.3333333333333333, htsjdk.tribble.gff.Gff3BaseData@30a7b722=0.3333333333333333, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=0.3333333333333333}) |
0s |
passed |
| testMultiOverlapMethod[7](PROPORTIONAL, [theContig:175-250 + ., theContig:400-525 + .], htsjdk.samtools.util.OverlapDetector@13a930ea, {htsjdk.tribble.gff.Gff3BaseData@a2b3c830=0.13962264150943396, htsjdk.tribble.gff.Gff3BaseData@30a7b722=0.47924528301886793, htsjdk.tribble.gff.Gff3BaseData@9e86aef3=0.19622641509433963}) |
0.001s |
passed |
| testSenseAntisense[0](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[10](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_FORWARD, true) |
0.001s |
passed |
| testSenseAntisense[11](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[12](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[13](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_REVERSE, false) |
0s |
passed |
| testSenseAntisense[14](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_FORWARD, true) |
0s |
passed |
| testSenseAntisense[15](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[16](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[17](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_REVERSE, false) |
0s |
passed |
| testSenseAntisense[18](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_FORWARD, true) |
0s |
passed |
| testSenseAntisense[19](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[1](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[20](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[21](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[22](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[23](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[24](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[25](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_REVERSE, false) |
0s |
passed |
| testSenseAntisense[26](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_FORWARD, true) |
0s |
passed |
| testSenseAntisense[27](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[28](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[29](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_REVERSE, false) |
0s |
passed |
| testSenseAntisense[2](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[30](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_FORWARD, true) |
0s |
passed |
| testSenseAntisense[31](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[32](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[33](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[34](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[35](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[36](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[37](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[38](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[39](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[3](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@95ea96fd, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[40](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[41](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[42](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[43](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_REVERSE, true) |
0s |
passed |
| testSenseAntisense[44](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[45](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_REVERSE, false) |
0s |
passed |
| testSenseAntisense[46](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_FORWARD, true) |
0s |
passed |
| testSenseAntisense[47](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[4](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_FORWARD, true) |
0s |
passed |
| testSenseAntisense[5](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, FORWARD_REVERSE, true) |
0s |
passed |
| testSenseAntisense[6](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_FORWARD, false) |
0s |
passed |
| testSenseAntisense[7](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@c0470314, REVERSE_REVERSE, false) |
0s |
passed |
| testSenseAntisense[8](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_FORWARD, false) |
0s |
passed |
| testSenseAntisense[9](default_read 1:10000-10149, htsjdk.tribble.gff.Gff3BaseData@7ea99789, FORWARD_REVERSE, false) |
0s |
passed |