| Test |
Duration |
Result |
| testCRAMValidationDoesAcceptSuperset[0]([SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])]) |
0.001s |
passed |
| testCRAMValidationDoesAcceptSuperset[1]([SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testCRAMValidationDoesAcceptSuperset[2]([SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testCRAMValidationDoesRequireSuperset[0]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])]) |
0.002s |
passed |
| testCRAMValidationDoesRequireSuperset[1]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testGetContigNamesList |
0.003s |
passed |
| testGetContigNamesListExpectingException |
0s |
passed |
| testSequenceDictionaryComparison[0]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[10]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[11]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[12]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[13]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[14]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[15]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[16]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[17]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[18]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[19]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[1]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[20]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryComparison[21]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[22]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[23]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[24]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[25]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[26]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[27]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[28]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryComparison[29]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[2]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, true, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[30]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[31]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[32]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[33]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[34]([SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[35]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[36]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryComparison[37]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[38]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[39]([SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[3]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[40]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[41]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[42]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[43]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[44]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[45]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[46]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[47]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[48]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[49]([SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[4]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[50]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0.001s |
passed |
| testSequenceDictionaryComparison[51]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[52]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[53]([SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[54]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[55]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[56]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[57]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[58]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[59]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[5]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[60]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[61]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0.001s |
passed |
| testSequenceDictionaryComparison[62]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[63]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[64]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[65]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[66]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[67]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0.001s |
passed |
| testSequenceDictionaryComparison[68]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[69]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[6]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[70]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0.001s |
passed |
| testSequenceDictionaryComparison[71]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[72]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[73]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0.001s |
passed |
| testSequenceDictionaryComparison[74]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[75]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[76]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[77]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, false) |
0s |
passed |
| testSequenceDictionaryComparison[78]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[79]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[7]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[80]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[81]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[82]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[83]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[84]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[85]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[86]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[87]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, true) |
0s |
passed |
| testSequenceDictionaryComparison[88]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[89]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, true) |
0s |
passed |
| testSequenceDictionaryComparison[8]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[90]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[91]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[92]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryComparison[93]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[94]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[95]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryComparison[9]([SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[0]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[10]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[11]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[12]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryValidation[13]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[14]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[15]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[16]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[17]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[18]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[19]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[1]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[20]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryValidation[21]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[22]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[23]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[24]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[25]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[26]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[27]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[28]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0s |
passed |
| testSequenceDictionaryValidation[29]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[2]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, true, false) |
0s |
passed |
| testSequenceDictionaryValidation[30]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[31]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[32]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], NO_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[33]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[34]([SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[35]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[36]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[37]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[38]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[39]([SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[3]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[40]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[41]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[42]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[43]([SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[44]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[])], UNEQUAL_COMMON_CONTIGS, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[45]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0.001s |
passed |
| testSequenceDictionaryValidation[46]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[47]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0.001s |
passed |
| testSequenceDictionaryValidation[48]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[49]([SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[4]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[50]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[51]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[52]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[53]([SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=247249719,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135374737,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=242951149,dict_index=-1,assembly=null,alternate_names=[])], NON_CANONICAL_HUMAN_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$LexicographicallySortedSequenceDictionary, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[54]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[55]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[56]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[57]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0.001s |
passed |
| testSequenceDictionaryValidation[58]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[59]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[5]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[60]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0.001s |
passed |
| testSequenceDictionaryValidation[61]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[62]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[63]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], OUT_OF_ORDER, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[64]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[65]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[66]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[67]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[68]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[69]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0.001s |
passed |
| testSequenceDictionaryValidation[6]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[70]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[71]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[72]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[73]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[74]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[75]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], DIFFERENT_INDICES, class org.broadinstitute.hellbender.exceptions.UserException$IncompatibleSequenceDictionaries, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[76]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[77]([SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, false) |
0s |
passed |
| testSequenceDictionaryValidation[78]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[79]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[7]([SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=1,length=249250621,dict_index=0,assembly=null,alternate_names=[]), SAMSequenceRecord(name=2,length=243199373,dict_index=1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=10,length=135534747,dict_index=2,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[80]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], COMMON_SUBSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[81]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[82]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[83]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[84]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[85]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard2,length=8675308,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[86]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[87]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, true) |
0s |
passed |
| testSequenceDictionaryValidation[88]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[89]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, true, true) |
0s |
passed |
| testSequenceDictionaryValidation[8]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[90]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[91]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[92]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[93]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0.001s |
passed |
| testSequenceDictionaryValidation[94]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[95]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])], SUPERSET, null, false, false) |
0s |
passed |
| testSequenceDictionaryValidation[9]([SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], IDENTICAL, null, false, false) |
0s |
passed |
| testSequenceRecordsAreEquivalent[0](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), true) |
0s |
passed |
| testSequenceRecordsAreEquivalent[1](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chrM,length=16571,dict_index=-1,assembly=null,alternate_names=[]), false) |
0s |
passed |
| testSequenceRecordsAreEquivalent[2](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=NonStandard1,length=8675309,dict_index=-1,assembly=null,alternate_names=[]), false) |
0s |
passed |
| testSequenceRecordsAreEquivalent[3](null, null, true) |
0s |
passed |
| testSequenceRecordsAreEquivalent[4](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), null, false) |
0s |
passed |
| testSequenceRecordsAreEquivalent[5](null, SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), false) |
0s |
passed |
| testSequenceRecordsAreEquivalent[6](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[]), true) |
0s |
passed |
| testSequenceRecordsAreEquivalent[7](SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[]), false) |
0.001s |
passed |
| testSequenceRecordsAreEquivalent[8](SAMSequenceRecord(name=chr1,length=0,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), true) |
0s |
passed |
| testSequenceRecordsAreEquivalent[9](SAMSequenceRecord(name=chr1,length=123456,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), false) |
0s |
passed |
| testStandardValidationDoesNotRequireSuperset[0]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testStandardValidationDoesNotRequireSuperset[1]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testStandardValidationIgnoresContigOrder[0]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testStandardValidationIgnoresContigOrder[1]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testStandardValidationIgnoresContigOrder[2]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |
| testStandardValidationIgnoresContigOrder[3]([SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[])], [SAMSequenceRecord(name=chr2,length=243199373,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr10,length=135534747,dict_index=-1,assembly=null,alternate_names=[]), SAMSequenceRecord(name=chr1,length=249250621,dict_index=-1,assembly=null,alternate_names=[])]) |
0s |
passed |