| Test |
Duration |
Result |
| testCanDecode[0](a.tsv, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[10](gencode.v26.annotation.tar.gz, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[11](gencode.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0.001s |
passed |
| testCanDecode[12](gencode.v26.primary_assembly.annotation.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[13](gencode.v26.long_noncoding_RNAs.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[14](gencode.invalid_short_header.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0.001s |
passed |
| testCanDecode[15](gencode.invalid_malformed_header.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[16](gencode.invalid_malformed_header_desc.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[17](gencode.invalid_malformed_header_prov.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[18](gencode.invalid_malformed_header_cont.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[19](gencode.invalid_malformed_header_form.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[1](a.table.gz, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[20](gencode.invalid_malformed_header_date.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0.001s |
passed |
| testCanDecode[21](gencode.valid1.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, true) |
0s |
passed |
| testCanDecode[22](gencode.valid_gencode_file2.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, true) |
0s |
passed |
| testCanDecode[23](gencode.and.this.is.a.valid.one.too.table.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, true) |
0s |
passed |
| testCanDecode[24](gencode.v43.LargeFile.gtf, /gatkCloneMountPoint/src/test/resources/large/, true) |
0s |
passed |
| testCanDecode[25](Escherichia_coli_str_k_12_substr_mg1655.ASM584v2.44.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/ecoli_ds/gencode/ASM584v2/, false) |
0.001s |
passed |
| testCanDecode[2](a.bed, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[3](a.bcf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[4](a.hapmap, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[5](a.refseq, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[6](a.beagle, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[7](a.table, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[8](gencode.v26.annotation.gtf.tsv, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testCanDecode[9](gencode.v26.annotation.tgz, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/, false) |
0s |
passed |
| testDecodeCanParseArbitraryFields[0](gene_type, GAJUAEWJIWIEG, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.005s |
passed |
| testDecodeCanParseArbitraryFields[10](transcript_type, 9SjyZMBAXY=Gg9eAyk62, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0s |
passed |
| testDecodeCanParseArbitraryFields[11](transcript_type, F9rt#9p9Ggex4dXs=EYO, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0s |
passed |
| testDecodeCanParseArbitraryFields[12](tag, 2e#H!FXh&F!N4xn$VD*e, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.002s |
passed |
| testDecodeCanParseArbitraryFields[13](tag, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[14](gene_id, 2e#H!FXh&F!N4xn$VD*e, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[15](transcript_id, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[16](gene_status, 2e#H!FXh&F!N4xn$VD*e, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[17](transcript_type, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[18](transcript_status, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0s |
passed |
| testDecodeCanParseArbitraryFields[19](transcript_name, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[1](gene_type, 2e#H!FXh&F!N4xn$VD*e, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[20](havana_gene, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[21](remap_status, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[22](remap_original_id, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[23](remap_target_status, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[24](transcript_support_level, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0s |
passed |
| testDecodeCanParseArbitraryFields[25](havana_transcript, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[26](level, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[27](exon_id, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[2](gene_type, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[3](gene_type, eGPvPbMcHYSbMoUDd@TY, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[4](gene_type, 9SjyZMBAXY=Gg9eAyk62, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[5](gene_type, F9rt#9p9Ggex4dXs=EYO, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[6](transcript_type, GAJUAEWJIWIEG, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[7](transcript_type, 2e#H!FXh&F!N4xn$VD*e, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[8](transcript_type, G23&#MPqP6gveAOcakY2, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecodeCanParseArbitraryFields[9](transcript_type, eGPvPbMcHYSbMoUDd@TY, gencode.biotype_template.gtf, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/utils/codecs/gtf/) |
0.001s |
passed |
| testDecode[0](gencode.valid1.gtf, [chr1 ENSEMBL gene 30366 30503 . + . gene_id "ENSG00000284332.1"; gene_type "miRNA"; gene_name "MIR1302-2"; level 3;
chr1 ENSEMBL transcript 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; level 3; transcript_support_level "NA"; tag "basic";
chr1 ENSEMBL exon 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; exon_number 1; exon_id "ENSE00003695741.1"; level 3; transcript_support_level "NA"; tag "basic";], hg38) |
0.001s |
passed |
| testDecode[1](gencode.valid_gencode_file2.gtf, [chr22 HAVANA gene 50200979 50217616 . + . gene_id "ENSG00000073169.13"; gene_type "protein_coding"; gene_name "SELENOO"; level 2; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL transcript 50200979 50217615 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50200979 50201590 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 1; exon_id "ENSE00001541223.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50201037 50201590 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 1; exon_id "ENSE00001541223.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL start_codon 50201037 50201039 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 1; exon_id "ENSE00001541223.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50206317 50206520 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 2; exon_id "ENSE00001129529.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50206317 50206520 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 2; exon_id "ENSE00001129529.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50208536 50208716 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 3; exon_id "ENSE00001129524.2"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50208536 50208716 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 3; exon_id "ENSE00001129524.2"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50210181 50210311 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 4; exon_id "ENSE00003473644.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50210181 50210311 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 4; exon_id "ENSE00003473644.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50210631 50210911 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 5; exon_id "ENSE00003503715.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50210631 50210911 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 5; exon_id "ENSE00003503715.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50215717 50215867 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 6; exon_id "ENSE00003573348.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50215717 50215867 . + 2 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 6; exon_id "ENSE00003573348.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50216691 50216876 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 7; exon_id "ENSE00003510005.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50216691 50216876 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 7; exon_id "ENSE00003510005.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50216972 50217128 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 8; exon_id "ENSE00003591346.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50216972 50217128 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 8; exon_id "ENSE00003591346.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50217205 50217357 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 9; exon_id "ENSE00003728455.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50217205 50217357 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 9; exon_id "ENSE00003728455.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL exon 50217361 50217615 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 10; exon_id "ENSE00003739808.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL CDS 50217361 50217366 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 10; exon_id "ENSE00003739808.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL stop_codon 50217367 50217369 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 10; exon_id "ENSE00003739808.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL UTR 50200979 50201036 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 1; exon_id "ENSE00001541223.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 ENSEMBL UTR 50217367 50217615 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000611222.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-201"; exon_number 10; exon_id "ENSE00003739808.1"; level 3; protein_id "ENSP00000483593.1"; transcript_support_level 5; tag "basic"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000044645.3";
chr22 HAVANA transcript 50200979 50217616 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA Selenocysteine 50217358 50217360 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50200979 50201590 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50201037 50201590 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA start_codon 50201037 50201039 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50206317 50206520 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 2; exon_id "ENSE00001129529.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50206317 50206520 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 2; exon_id "ENSE00001129529.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50208536 50208716 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 3; exon_id "ENSE00001129524.2"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50208536 50208716 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 3; exon_id "ENSE00001129524.2"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50210181 50210311 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 4; exon_id "ENSE00003473644.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50210181 50210311 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 4; exon_id "ENSE00003473644.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50210631 50210911 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 5; exon_id "ENSE00003503715.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50210631 50210911 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 5; exon_id "ENSE00003503715.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50215717 50215867 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 6; exon_id "ENSE00003573348.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50215717 50215867 . + 2 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 6; exon_id "ENSE00003573348.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50216691 50216876 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 7; exon_id "ENSE00003510005.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50216691 50216876 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 7; exon_id "ENSE00003510005.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50216972 50217128 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 8; exon_id "ENSE00003591346.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50216972 50217128 . + 1 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 8; exon_id "ENSE00003591346.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50217205 50217616 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50217205 50217366 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA stop_codon 50217367 50217369 . + 0 gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA UTR 50200979 50201036 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA UTR 50217367 50217616 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000380903.6"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "protein_coding"; transcript_name "SELENOO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; protein_id "ENSP00000370288.2"; transcript_support_level 1; tag "basic"; tag "appris_principal_2"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA transcript 50206442 50217616 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50206442 50206520 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 1; exon_id "ENSE00001890724.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50208488 50208716 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 2; exon_id "ENSE00001952603.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50210181 50210311 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 3; exon_id "ENSE00003583919.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50210631 50210911 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 4; exon_id "ENSE00003620115.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50215717 50215867 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 5; exon_id "ENSE00003636069.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50216691 50216876 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 6; exon_id "ENSE00003579717.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50216972 50217128 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 7; exon_id "ENSE00003650938.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50217205 50217616 . + . gene_id "ENSG00000073169.13"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_name "SELENOO"; transcript_type "processed_transcript"; transcript_name "SELENOO-002"; exon_number 8; exon_id "ENSE00003475904.1"; level 2; transcript_support_level 1; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";], hg38) |
0.006s |
passed |
| testDecode[2](gencode.and.this.is.a.valid.one.too.table.gtf, [KI270734.1 ENSEMBL gene 138082 161852 . - . gene_id "ENSG00000277196.4"; gene_type "protein_coding"; gene_name "AC007325.2"; level 3;
KI270734.1 ENSEMBL transcript 138082 161750 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 161689 161750 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 1; exon_id "ENSE00003735197.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 156289 156497 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 2; exon_id "ENSE00003737280.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 156289 156446 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 2; exon_id "ENSE00003737280.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL start_codon 156444 156446 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 2; exon_id "ENSE00003737280.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 150987 151021 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 3; exon_id "ENSE00003731891.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 150987 151021 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 3; exon_id "ENSE00003731891.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 150350 150499 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 4; exon_id "ENSE00003724613.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 150350 150499 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 4; exon_id "ENSE00003724613.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 148414 148478 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 5; exon_id "ENSE00003732418.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 148414 148478 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 5; exon_id "ENSE00003732418.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 148116 148232 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 6; exon_id "ENSE00003733960.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 148116 148232 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 6; exon_id "ENSE00003733960.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 147624 147703 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 7; exon_id "ENSE00003727207.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 147624 147703 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 7; exon_id "ENSE00003727207.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 146640 146721 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 8; exon_id "ENSE00003728972.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 146640 146721 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 8; exon_id "ENSE00003728972.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 145004 145096 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 9; exon_id "ENSE00003733844.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 145004 145096 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 9; exon_id "ENSE00003733844.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 144749 144895 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 10; exon_id "ENSE00003752738.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 144749 144895 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 10; exon_id "ENSE00003752738.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 143614 143789 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 11; exon_id "ENSE00003720006.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 143614 143789 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 11; exon_id "ENSE00003720006.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 142194 142292 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 12; exon_id "ENSE00003719283.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 142194 142292 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 12; exon_id "ENSE00003719283.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 138743 138831 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 13; exon_id "ENSE00003751415.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 138743 138831 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 13; exon_id "ENSE00003751415.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 138082 138667 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 14; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 138483 138667 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 14; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL stop_codon 138480 138482 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 14; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 161689 161750 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 1; exon_id "ENSE00003735197.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 156447 156497 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 2; exon_id "ENSE00003737280.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 138082 138482 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000615165.1"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-202"; exon_number 14; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000482462.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL transcript 138082 161852 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 161689 161852 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 1; exon_id "ENSE00003746084.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 161314 161626 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 2; exon_id "ENSE00003719550.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 161314 161586 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 2; exon_id "ENSE00003719550.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL start_codon 161584 161586 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 2; exon_id "ENSE00003719550.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 156289 156497 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 3; exon_id "ENSE00003723757.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 156289 156497 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 3; exon_id "ENSE00003723757.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 150987 151021 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 4; exon_id "ENSE00003731891.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 150987 151021 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 4; exon_id "ENSE00003731891.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 150350 150499 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 5; exon_id "ENSE00003724613.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 150350 150499 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 5; exon_id "ENSE00003724613.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 148414 148478 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 6; exon_id "ENSE00003732418.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 148414 148478 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 6; exon_id "ENSE00003732418.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 148116 148232 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 7; exon_id "ENSE00003733960.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 148116 148232 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 7; exon_id "ENSE00003733960.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 147624 147703 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 8; exon_id "ENSE00003727207.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 147624 147703 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 8; exon_id "ENSE00003727207.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 146640 146721 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 9; exon_id "ENSE00003728972.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 146640 146721 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 9; exon_id "ENSE00003728972.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 145004 145096 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 10; exon_id "ENSE00003733844.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 145004 145096 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 10; exon_id "ENSE00003733844.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 144749 144895 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 11; exon_id "ENSE00003752738.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 144749 144895 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 11; exon_id "ENSE00003752738.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 143614 143789 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 12; exon_id "ENSE00003720006.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 143614 143789 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 12; exon_id "ENSE00003720006.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 142194 142292 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 13; exon_id "ENSE00003719283.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 142194 142292 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 13; exon_id "ENSE00003719283.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 138743 138831 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 14; exon_id "ENSE00003751415.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 138743 138831 . - 1 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 14; exon_id "ENSE00003751415.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL exon 138082 138667 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 15; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL CDS 138483 138667 . - 2 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 15; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL stop_codon 138480 138482 . - 0 gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 15; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 161689 161852 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 1; exon_id "ENSE00003746084.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 161587 161626 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 2; exon_id "ENSE00003719550.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";
KI270734.1 ENSEMBL UTR 138082 138482 . - . gene_id "ENSG00000277196.4"; transcript_id "ENST00000621424.4"; gene_type "protein_coding"; gene_name "AC007325.2"; transcript_type "protein_coding"; transcript_name "AC007325.2-201"; exon_number 15; exon_id "ENSE00003753010.1"; level 3; protein_id "ENSP00000481127.1"; transcript_support_level 1; tag "basic";], hg38) |
0.004s |
passed |
| testDecode[3](gencode.v19.valid1.gtf, [chr1 HAVANA gene 11869 14412 . + . gene_id "ENSG00000223972.4"; transcript_id "ENSG00000223972.4"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type "pseudogene"; transcript_status "KNOWN"; transcript_name "DDX11L1"; level 2; havana_gene "OTTHUMG00000000961.2";
chr1 HAVANA transcript 11869 14409 . + . gene_id "ENSG00000223972.4"; transcript_id "ENST00000456328.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX11L1-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000362751.1";
chr1 HAVANA exon 11869 12227 . + . gene_id "ENSG00000223972.4"; transcript_id "ENST00000456328.2"; gene_type "pseudogene"; gene_status "KNOWN"; gene_name "DDX11L1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "DDX11L1-002"; exon_number 1; exon_id "ENSE00002234944.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000000961.2"; havana_transcript "OTTHUMT00000362751.1";], hg19) |
0s |
passed |
| testDecode[4](gencode.v19.valid_gencode_file2.gtf, [chr22 HAVANA gene 50637519 50638976 . - . gene_id "ENSG00000273253.1"; transcript_id "ENSG00000273253.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-402G11.26"; transcript_type "antisense"; transcript_status "NOVEL"; transcript_name "RP3-402G11.26"; level 2; havana_gene "OTTHUMG00000186123.2";
chr22 HAVANA transcript 50637519 50638976 . - . gene_id "ENSG00000273253.1"; transcript_id "ENST00000608025.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-402G11.26"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-402G11.26-001"; level 2; tag "basic"; havana_gene "OTTHUMG00000186123.2"; havana_transcript "OTTHUMT00000472292.2";
chr22 HAVANA exon 50638505 50638976 . - . gene_id "ENSG00000273253.1"; transcript_id "ENST00000608025.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-402G11.26"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-402G11.26-001"; exon_number 1; exon_id "ENSE00003710600.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000186123.2"; havana_transcript "OTTHUMT00000472292.2";
chr22 HAVANA exon 50637519 50637757 . - . gene_id "ENSG00000273253.1"; transcript_id "ENST00000608025.1"; gene_type "antisense"; gene_status "NOVEL"; gene_name "RP3-402G11.26"; transcript_type "antisense"; transcript_status "KNOWN"; transcript_name "RP3-402G11.26-001"; exon_number 2; exon_id "ENSE00003710731.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000186123.2"; havana_transcript "OTTHUMT00000472292.2";, chr22 HAVANA gene 50639408 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENSG00000073169.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO"; level 2; havana_gene "OTTHUMG00000044645.3";
chr22 HAVANA transcript 50639408 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA Selenocysteine 50655787 50655789 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50639408 50640019 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50639466 50640019 . + 0 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA start_codon 50639466 50639468 . + 0 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 1; exon_id "ENSE00001541223.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50644746 50644949 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 2; exon_id "ENSE00001129529.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50644746 50644949 . + 1 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 2; exon_id "ENSE00001129529.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50646965 50647145 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 3; exon_id "ENSE00001129524.2"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50646965 50647145 . + 1 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 3; exon_id "ENSE00001129524.2"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50648610 50648740 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 4; exon_id "ENSE00003473644.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50648610 50648740 . + 0 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 4; exon_id "ENSE00003473644.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50649060 50649340 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 5; exon_id "ENSE00003503715.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50649060 50649340 . + 1 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 5; exon_id "ENSE00003503715.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50654146 50654296 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 6; exon_id "ENSE00003573348.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50654146 50654296 . + 2 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 6; exon_id "ENSE00003573348.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50655120 50655305 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 7; exon_id "ENSE00003510005.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50655120 50655305 . + 1 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 7; exon_id "ENSE00003510005.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50655401 50655557 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 8; exon_id "ENSE00003591346.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50655401 50655557 . + 1 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 8; exon_id "ENSE00003591346.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA exon 50655634 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA CDS 50655634 50655795 . + 0 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA stop_codon 50655796 50655798 . + 0 gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; exon_number 9; exon_id "ENSE00003512975.1"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA UTR 50639408 50639465 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA UTR 50655796 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000380903.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "SELO-001"; level 2; tag "basic"; tag "appris_principal"; tag "CCDS"; tag "seleno"; ccdsid "CCDS43034.1"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000075003.2";
chr22 HAVANA transcript 50644871 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50644871 50644949 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 1; exon_id "ENSE00001890724.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50646917 50647145 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 2; exon_id "ENSE00001952603.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50648610 50648740 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 3; exon_id "ENSE00003583919.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50649060 50649340 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 4; exon_id "ENSE00003620115.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50654146 50654296 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 5; exon_id "ENSE00003636069.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50655120 50655305 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 6; exon_id "ENSE00003579717.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50655401 50655557 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 7; exon_id "ENSE00003650938.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";
chr22 HAVANA exon 50655634 50656045 . + . gene_id "ENSG00000073169.9"; transcript_id "ENST00000492092.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "SELO"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "SELO-002"; exon_number 8; exon_id "ENSE00003475904.1"; level 2; tag "basic"; havana_gene "OTTHUMG00000044645.3"; havana_transcript "OTTHUMT00000316993.1";], hg19) |
0.003s |
passed |
| testDecode[5](gencode.v19.and.this.is.a.valid.one.too.gtf, [GL000218.1 ENSEMBL gene 38792 97421 . - . gene_id "ENSG00000215615.1"; transcript_id "ENSG00000215615.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1"; level 3;
GL000218.1 ENSEMBL transcript 38792 97421 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; level 3; tag "basic";
GL000218.1 ENSEMBL exon 97368 97421 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 1; exon_id "ENSE00001544212.1"; level 3; tag "basic";
GL000218.1 ENSEMBL exon 95174 95232 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 2; exon_id "ENSE00001849396.1"; level 3; tag "basic";
GL000218.1 ENSEMBL CDS 95174 95230 . - 0 gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 2; exon_id "ENSE00001849396.1"; level 3; tag "basic";
GL000218.1 ENSEMBL start_codon 95228 95230 . - 0 gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 2; exon_id "ENSE00001849396.1"; level 3; tag "basic";
GL000218.1 ENSEMBL exon 40642 40872 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 3; exon_id "ENSE00001900862.1"; level 3; tag "basic";
GL000218.1 ENSEMBL CDS 40642 40872 . - 0 gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 3; exon_id "ENSE00001900862.1"; level 3; tag "basic";
GL000218.1 ENSEMBL exon 39874 40028 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 4; exon_id "ENSE00001544206.1"; level 3; tag "basic";
GL000218.1 ENSEMBL CDS 39874 40028 . - 0 gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 4; exon_id "ENSE00001544206.1"; level 3; tag "basic";
GL000218.1 ENSEMBL exon 38792 39019 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 5; exon_id "ENSE00001544203.1"; level 3; tag "basic";
GL000218.1 ENSEMBL CDS 38794 39019 . - 1 gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; exon_number 5; exon_id "ENSE00001544203.1"; level 3; tag "basic";
GL000218.1 ENSEMBL UTR 97368 97421 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; level 3; tag "basic";
GL000218.1 ENSEMBL UTR 95231 95232 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; level 3; tag "basic";
GL000218.1 ENSEMBL UTR 38792 38793 . - . gene_id "ENSG00000215615.1"; transcript_id "ENST00000400681.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AL354822.1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AL354822.1-201"; level 3; tag "basic";], hg19) |
0.001s |
passed |
| testIndexingAndIndexCreation[0](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 105958620, 106070470, 1) |
0.538s |
passed |
| testIndexingAndIndexCreation[10](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 1, 200000000, 1982) |
0.707s |
passed |
| testIndexingAndIndexCreation[11](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 33001, 34091, 0) |
0.378s |
passed |
| testIndexingAndIndexCreation[12](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 32198, 41014, 1) |
0.158s |
passed |
| testIndexingAndIndexCreation[13](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 35001, 35500, 1) |
0.162s |
passed |
| testIndexingAndIndexCreation[14](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 35500, 37000, 1) |
0.159s |
passed |
| testIndexingAndIndexCreation[15](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 32198, 35500, 1) |
0.160s |
passed |
| testIndexingAndIndexCreation[16](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 1, 200000000, 677) |
0.311s |
passed |
| testIndexingAndIndexCreation[17](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 33001, 34091, 0) |
0.159s |
passed |
| testIndexingAndIndexCreation[1](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 106033442, 106034738, 1) |
0.391s |
passed |
| testIndexingAndIndexCreation[2](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 106033442, 106070470, 1) |
0.366s |
passed |
| testIndexingAndIndexCreation[3](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 105958620, 106034738, 1) |
0.365s |
passed |
| testIndexingAndIndexCreation[4](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 1, 200000000, 2366) |
0.656s |
passed |
| testIndexingAndIndexCreation[5](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 10000, 200000, 0) |
0.391s |
passed |
| testIndexingAndIndexCreation[6](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 32198, 41014, 1) |
0.379s |
passed |
| testIndexingAndIndexCreation[7](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 35001, 35500, 1) |
0.376s |
passed |
| testIndexingAndIndexCreation[8](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 35500, 37000, 1) |
0.377s |
passed |
| testIndexingAndIndexCreation[9](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 32198, 35500, 1) |
0.382s |
passed |
| testIndexing[0](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 105958620, 106070470, 1) |
0.190s |
passed |
| testIndexing[10](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 1, 200000000, 1982) |
0.467s |
passed |
| testIndexing[11](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 33001, 34091, 0) |
0.003s |
passed |
| testIndexing[12](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 32198, 41014, 1) |
0.002s |
passed |
| testIndexing[13](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 35001, 35500, 1) |
0.002s |
passed |
| testIndexing[14](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 35500, 37000, 1) |
0.002s |
passed |
| testIndexing[15](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 32198, 35500, 1) |
0.007s |
passed |
| testIndexing[16](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 1, 200000000, 677) |
0.160s |
passed |
| testIndexing[17](/gatkCloneMountPoint/src/test/resources/large/gencode.v43.LargeFile.gtf, chr1, 33001, 34091, 0) |
0.002s |
passed |
| testIndexing[1](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 106033442, 106034738, 1) |
0.021s |
passed |
| testIndexing[2](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 106033442, 106070470, 1) |
0.022s |
passed |
| testIndexing[3](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 105958620, 106034738, 1) |
0.020s |
passed |
| testIndexing[4](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 1, 200000000, 2366) |
0.673s |
passed |
| testIndexing[5](/gatkCloneMountPoint/src/test/resources/large/gencode.v26.primary_assembly.annotation.XYZ.gtf, chrX, 10000, 200000, 0) |
0.003s |
passed |
| testIndexing[6](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 32198, 41014, 1) |
0.004s |
passed |
| testIndexing[7](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 35001, 35500, 1) |
0.002s |
passed |
| testIndexing[8](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 35500, 37000, 1) |
0.002s |
passed |
| testIndexing[9](/gatkCloneMountPoint/src/test/resources/large/gencode.v19.LargeFile.gtf, chr1, 32198, 35500, 1) |
0.003s |
passed |
| testToString[0](chr1 ENSEMBL gene 30366 30503 . + . gene_id "ENSG00000284332.1"; gene_type "miRNA"; gene_name "MIR1302-2"; level 3;
chr1 ENSEMBL transcript 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; level 3; transcript_support_level "NA"; tag "basic";
chr1 ENSEMBL exon 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; exon_number 1; exon_id "ENSE00003695741.1"; level 3; transcript_support_level "NA"; tag "basic";, chr1 ENSEMBL gene 30366 30503 . + . gene_id "ENSG00000284332.1"; gene_type "miRNA"; gene_name "MIR1302-2"; level 3;
chr1 ENSEMBL transcript 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; level 3; transcript_support_level "NA"; tag "basic";
chr1 ENSEMBL exon 30366 30503 . + . gene_id "ENSG00000284332.1"; transcript_id "ENST00000607096.1"; gene_type "miRNA"; gene_name "MIR1302-2"; transcript_type "miRNA"; transcript_name "MIR1302-2-201"; exon_number 1; exon_id "ENSE00003695741.1"; level 3; transcript_support_level "NA"; tag "basic";) |
0s |
passed |
| testValidateHeader[0]([], false) |
0s |
passed |
| testValidateHeader[10]([#!genome-build ASM584v2, #!genome-version ASM584v2, #!genome-date 2014-08, #!genome-build-accession GCA_000005845.2, #!genebuild-last-updated 2014-08], false) |
0s |
passed |
| testValidateHeader[11]([ASM584v2, #!genome-version ASM584v2, #!genome-date 2014-08, #!genome-build-accession GCA_000005845.2, #!genebuild-last-updated 2014-08], false) |
0s |
passed |
| testValidateHeader[12]([#!genome-build ASM584v2, ASM584v2, #!genome-date 2014-08, #!genome-build-accession GCA_000005845.2, #!genebuild-last-updated 2014-08], false) |
0s |
passed |
| testValidateHeader[13]([#!genome-build ASM584v2, #!genome-version ASM584v2, #2014-08, #!genome-build-accession GCA_000005845.2, #!genebuild-last-updated 2014-08], false) |
0s |
passed |
| testValidateHeader[14]([#!genome-build ASM584v2, #!genome-version ASM584v2, #!genome-date 2014-08, #GCA_000005845.2, #!genebuild-last-updated 2014-08], false) |
0s |
passed |
| testValidateHeader[15]([#!genome-build ASM584v2, #!genome-version ASM584v2, #!genome-date 2014-08, #!genome-build-accession GCA_000005845.2, #2014-08], false) |
0s |
passed |
| testValidateHeader[16]([##description: evidence-based annotation of the human genome (GRCh38), version 26 (Ensembl 88), ##provider: GENCODE, ##contact: gencode-help@sanger.ac.uk, ##date: 2014-07-25], false) |
0s |
passed |
| testValidateHeader[1]([, , , , ], false) |
0s |
passed |
| testValidateHeader[2]([##descr, ##provider: GENCODE, ##contact: gencode-help@sanger.ac.uk, ##format: gtf, ##date: 2017-04-08], false) |
0s |
passed |
| testValidateHeader[3]([##description: THIS IS A SAMPLE, ##provider: GARBAGEDAY, ##contact: gencode-help@sanger.ac.uk, ##format: gtf, ##date: 2017-04-08], false) |
0s |
passed |
| testValidateHeader[4]([##description: THIS IS A SAMPLE, ##provider: GENCODE, ##contact: gencode@NORTHPOLE.pl, ##format: gtf, ##date: 2017-04-08], false) |
0s |
passed |
| testValidateHeader[5]([##description: THIS IS A SAMPLE, ##provider: GENCODE, ##contact: SANTACLAUSE@sanger.ac.uk, ##format: gtf, ##date: 2017-04-08], false) |
0s |
passed |
| testValidateHeader[6]([##description: THIS IS A SAMPLE, ##provider: GENCODE, ##contact: gencode-help@sanger.ac.uk, ##format: dumpy, ##date: 2017-04-08], false) |
0s |
passed |
| testValidateHeader[7]([##description: THIS IS A SAMPLE, ##provider: GENCODE, ##contact: gencode-help@sanger.ac.uk, ##format: gtf, ##doom: ID Software], false) |
0s |
passed |
| testValidateHeader[8]([##description: evidence-based annotation of the human genome (GRCh37), version 19 (Ensembl 74), ##provider: GENCODE, ##contact: gencode@sanger.ac.uk, ##format: gtf, ##date: 2014-07-25], true) |
0s |
passed |
| testValidateHeader[9]([##description: evidence-based annotation of the human genome (GRCh38), version 26 (Ensembl 88), ##provider: GENCODE, ##contact: gencode-help@sanger.ac.uk, ##format: gtf, ##date: 2014-07-25], true) |
0s |
passed |