| Test |
Duration |
Result |
| testBasicGetSAMString |
0.001s |
passed |
| testCigarLengthCaching |
0s |
passed |
| testClearAllAttributes[0](basic_read 1:5-7) |
0s |
passed |
| testDeepCopyAttributes[0](basic_read 1:5-7) |
0.001s |
passed |
| testDeepCopyPosition[0](basic_read 1:5-7) |
0s |
passed |
| testDeepCopyReverseStrand[0](basic_read 1:5-7) |
0.001s |
passed |
| testGetAdaptorBoundary |
0s |
passed |
| testGetAndSetBaseQualities[0](basic_read 1:5-7, [B@54040ac1) |
0s |
passed |
| testGetAndSetBaseQualities[1](basic_read 1:5-7, [B@2d83b72f) |
0s |
passed |
| testGetAndSetBaseQualities[2](basic_read 1:5-7, [B@70fedb84) |
0s |
passed |
| testGetAndSetBases[0](basic_read 1:5-7, [B@61c9ea03, ACGT) |
0s |
passed |
| testGetAndSetBases[1](basic_read 1:5-7, [B@27ab46d3, *) |
0s |
passed |
| testGetAndSetBases[2](basic_read 1:5-7, [B@40b80480, *) |
0s |
passed |
| testGetAndSetByteArrayAttribute[0](basic_read 1:5-7) |
0.001s |
passed |
| testGetAndSetCigar[0](basic_read 1:5-7, 1M1I2M) |
0s |
passed |
| testGetAndSetCigar[1](basic_read UNMAPPED, *) |
0s |
passed |
| testGetAndSetCigar[2](basic_read UNMAPPED, *) |
0s |
passed |
| testGetAndSetFragmentLength[0](basic_read 1:5-7, 0) |
0s |
passed |
| testGetAndSetFragmentLength[1](basic_read 1:5-7, 120) |
0s |
passed |
| testGetAndSetIntegerAttribute[0](basic_read 1:5-7) |
0s |
passed |
| testGetAndSetMappingQuality[0](basic_read 1:5-7, 20) |
0s |
passed |
| testGetAndSetMappingQuality[1](basic_read 1:5-7, 0) |
0s |
passed |
| testGetAndSetMatePosition[0](basic_read 1:5-7, 1, 125) |
0s |
passed |
| testGetAndSetMatePosition[1](basic_read 1:5-7, null, 0) |
0s |
passed |
| testGetAndSetName[0](basic_read 1:5-7, basic_read) |
0s |
passed |
| testGetAndSetName[1](null 1:5-7, null) |
0s |
passed |
| testGetAndSetPosition[0](basic_read 1:5-7, 1, 5, 7) |
0s |
passed |
| testGetAndSetPosition[1](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testGetAndSetPosition[2](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testGetAndSetPosition[3](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testGetAndSetReadGroup[0](basic_read 1:5-7, Foo) |
0s |
passed |
| testGetAndSetReadGroup[1](basic_read 1:5-7, null) |
0s |
passed |
| testGetAndSetSimpleFlags[0](basic_read 1:5-7) |
0s |
passed |
| testGetAndSetStringAttribute[0](basic_read 1:5-7) |
0s |
passed |
| testGetAndSetUnclippedStartAndEnd[0](basic_read 1:5-6, 4, 7) |
0s |
passed |
| testGetAndSetUnclippedStartAndEnd[1](basic_read 1:5-6, 2, 8) |
0s |
passed |
| testGetAssignedPosition[0](basic_read 1:5-7, 1, 5) |
0s |
passed |
| testGetAssignedPosition[1](basic_read UNMAPPED, 1, 5) |
0s |
passed |
| testGetAssignedPosition[2](basic_read UNMAPPED, *, 5) |
0s |
passed |
| testGetAssignedPosition[3](basic_read UNMAPPED, 1, 0) |
0s |
passed |
| testGetLength[0](basic_read 1:5-7, 4) |
0s |
passed |
| testGetLength[1](basic_read 1:5-7, 0) |
0s |
passed |
| testGetNonByteArrayAttributeAsByteArray |
0s |
passed |
| testGetNonIntegerAttributeAsInteger[0](basic_read 1:5-7) |
0s |
passed |
| testGetPairOrientationEmpty[0](default_read UNMAPPED) |
0s |
passed |
| testGetPairOrientationEmpty[1](default_read UNMAPPED) |
0s |
passed |
| testGetPairOrientationEmpty[2](default_read 1:100-199) |
0s |
passed |
| testGetPairOrientationFailures[0](default_read 1:10000-10099) |
0s |
passed |
| testGetPairOrientation[0](default_read 1:100-199, FR) |
0.001s |
passed |
| testGetPairOrientation[1](default_read 1:200-299, FR) |
0s |
passed |
| testGetPairOrientation[2](default_read 1:200-299, RF) |
0s |
passed |
| testGetPairOrientation[3](default_read 1:100-199, RF) |
0s |
passed |
| testGetPairOrientation[4](default_read 1:100-199, TANDEM) |
0s |
passed |
| testGetPairOrientation[5](default_read 1:100-199, TANDEM) |
0s |
passed |
| testGetReadNumberOfUnpairedRead[0](basic_read 1:5-7) |
0s |
passed |
| testGetReadNumberOfUnpairedRead[1](basic_read 1:5-7) |
0s |
passed |
| testGetSoftStartAndEnd |
0s |
passed |
| testHardClipAttributes[0](default_read chr1:100-105, 1, 3, 6) |
0s |
passed |
| testHardClipAttributes[1](default_read chr1:100-105, 0, 4, 6) |
0s |
passed |
| testHardClipAttributes[2](default_read chr1:100-105, 0, 6, 6) |
0s |
passed |
| testInvalidMateIsReverseStrand[0](basic_read 1:5-7) |
0s |
passed |
| testInvalidMateIsUnmapped[0](basic_read 1:5-7) |
0s |
passed |
| testIsPaired[0](basic_read 1:5-7, true, false) |
0s |
passed |
| testIsPaired[1](basic_read 1:5-7, false, false) |
0s |
passed |
| testIsPaired[2](basic_read 1:5-7, true, true) |
0s |
passed |
| testIsPaired[3](basic_read 1:5-7, false, false) |
0s |
passed |
| testIsReverseStrand[0](basic_read 1:5-7, false) |
0s |
passed |
| testIsReverseStrand[1](basic_read 1:5-7, true) |
0s |
passed |
| testIsUnmapped[0](basic_read UNMAPPED, true) |
0s |
passed |
| testIsUnmapped[1](basic_read UNMAPPED, true) |
0s |
passed |
| testIsUnmapped[2](basic_read UNMAPPED, true) |
0s |
passed |
| testIsUnmapped[3](basic_read 1:5-7, false) |
0s |
passed |
| testMateIsReverseStrand[0](basic_read 1:5-7, false) |
0s |
passed |
| testMateIsReverseStrand[1](basic_read 1:5-7, true) |
0s |
passed |
| testMateIsUnmapped[0](basic_read 1:5-7, false) |
0s |
passed |
| testMateIsUnmapped[1](basic_read 1:5-7, true) |
0s |
passed |
| testMateIsUnmapped[2](basic_read 1:5-7, true) |
0s |
passed |
| testMateIsUnmapped[3](basic_read 1:5-7, true) |
0s |
passed |
| testReadNumber[0](basic_read 1:5-7, true, false) |
0s |
passed |
| testReadNumber[1](basic_read 1:5-7, false, true) |
0s |
passed |
| testSAMStringAttributes[0](basic_read 1:5-7) |
0.001s |
passed |
| testSAMStringBaseQualities[0](basic_read 1:5-7, [B@54040ac1) |
0s |
passed |
| testSAMStringBaseQualities[1](basic_read 1:5-7, [B@4d52568a) |
0.001s |
passed |
| testSAMStringBaseQualities[2](basic_read 1:5-7, [B@5dfdd777) |
0s |
passed |
| testSAMStringBases[0](basic_read 1:5-7, [B@61c9ea03, ACGT) |
0s |
passed |
| testSAMStringBases[1](basic_read 1:5-7, [B@e680306, *) |
0s |
passed |
| testSAMStringBases[2](basic_read 1:5-7, [B@1843709e, *) |
0s |
passed |
| testSAMStringCigar[0](basic_read 1:5-7, 1M1I2M) |
0s |
passed |
| testSAMStringCigar[1](basic_read UNMAPPED, *) |
0s |
passed |
| testSAMStringCigar[2](basic_read UNMAPPED, *) |
0s |
passed |
| testSAMStringFragmentLengthString[0](basic_read 1:5-7, 0) |
0.001s |
passed |
| testSAMStringFragmentLengthString[1](basic_read 1:5-7, 120) |
0s |
passed |
| testSAMStringIsPaired[0](basic_read 1:5-7, true, false) |
0s |
passed |
| testSAMStringIsPaired[1](basic_read 1:5-7, false, false) |
0.001s |
passed |
| testSAMStringIsPaired[2](basic_read 1:5-7, true, true) |
0s |
passed |
| testSAMStringIsPaired[3](basic_read 1:5-7, false, false) |
0s |
passed |
| testSAMStringIsReverseStrand[0](basic_read 1:5-7, false) |
0.001s |
passed |
| testSAMStringIsReverseStrand[1](basic_read 1:5-7, true) |
0s |
passed |
| testSAMStringIsUnmapped[0](basic_read UNMAPPED, true) |
0s |
passed |
| testSAMStringIsUnmapped[1](basic_read UNMAPPED, true) |
0s |
passed |
| testSAMStringIsUnmapped[2](basic_read UNMAPPED, true) |
0s |
passed |
| testSAMStringIsUnmapped[3](basic_read 1:5-7, false) |
0s |
passed |
| testSAMStringLength[0](basic_read 1:5-7, 4) |
0s |
passed |
| testSAMStringLength[1](basic_read 1:5-7, 0) |
0s |
passed |
| testSAMStringMappingQuality[0](basic_read 1:5-7, 20) |
0s |
passed |
| testSAMStringMappingQuality[1](basic_read 1:5-7, 0) |
0s |
passed |
| testSAMStringMateIsReverseStrand[0](basic_read 1:5-7, false) |
0s |
passed |
| testSAMStringMateIsReverseStrand[1](basic_read 1:5-7, true) |
0s |
passed |
| testSAMStringMateIsUnmapped[0](basic_read 1:5-7, false) |
0.001s |
passed |
| testSAMStringMateIsUnmapped[1](basic_read 1:5-7, true) |
0s |
passed |
| testSAMStringMateIsUnmapped[2](basic_read 1:5-7, true) |
0s |
passed |
| testSAMStringMateIsUnmapped[3](basic_read 1:5-7, true) |
0s |
passed |
| testSAMStringMatePosition[0](basic_read 1:5-7, 1, 125) |
0.001s |
passed |
| testSAMStringMatePosition[1](basic_read 1:5-7, null, 0) |
0s |
passed |
| testSAMStringName[0](basic_read 1:5-7, basic_read) |
0s |
passed |
| testSAMStringName[1](null 1:5-7, null) |
0s |
passed |
| testSAMStringPosition[0](basic_read 1:5-7, 1, 5, 7) |
0s |
passed |
| testSAMStringPosition[1](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testSAMStringPosition[2](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testSAMStringPosition[3](basic_read UNMAPPED, null, 0, 0) |
0s |
passed |
| testSAMStringReadGroup[0](basic_read 1:5-7, Foo) |
0s |
passed |
| testSAMStringReadGroup[1](basic_read 1:5-7, null) |
0s |
passed |
| testSAMStringReadNumber[0](basic_read 1:5-7, true, false) |
0.001s |
passed |
| testSAMStringReadNumber[1](basic_read 1:5-7, false, true) |
0s |
passed |
| testSAMStringSimpleFlags[0](basic_read 1:5-7) |
0.001s |
passed |
| testSAMStringUnclippedStartAndEnd[0](basic_read 1:5-6, 4, 7) |
0s |
passed |
| testSAMStringUnclippedStartAndEnd[1](basic_read 1:5-6, 2, 8) |
0s |
passed |
| testSAMStringUnmappedMateContig |
0s |
passed |
| testSetInvalidMappingQualityOnSamBackedRead[0](-1) |
0s |
passed |
| testSetInvalidMappingQualityOnSamBackedRead[1](-10) |
0s |
passed |
| testSetInvalidMappingQualityOnSamBackedRead[2](256) |
0s |
passed |
| testSetInvalidMappingQualityOnSamBackedRead[3](1000) |
0s |
passed |
| testSetInvalidMatePositionOnSamBackedRead[0](null, 1) |
0s |
passed |
| testSetInvalidMatePositionOnSamBackedRead[1](*, 1) |
0s |
passed |
| testSetInvalidMatePositionOnSamBackedRead[2](1, 0) |
0s |
passed |
| testSetInvalidPositionOnSamBackedRead[0](null, 1) |
0s |
passed |
| testSetInvalidPositionOnSamBackedRead[1](*, 1) |
0s |
passed |
| testSetInvalidPositionOnSamBackedRead[2](1, 0) |
0s |
passed |
| testShallowCopy[0](basic_read 1:5-7) |
0s |
passed |
| testUnmappedUnpairedDistinction[0](null UNMAPPED, true, true) |
0s |
passed |
| testUnmappedUnpairedDistinction[1](null UNMAPPED, true, false) |
0s |
passed |
| testUnmappedUnpairedDistinction[2](null UNMAPPED, true, true) |
0s |
passed |
| testUnmappedUnpairedDistinction[3](null UNMAPPED, false, false) |
0s |
passed |
| testUnmappedUnpairedDistinctionmates[0](null UNMAPPED, true, true) |
0s |
passed |
| testUnmappedUnpairedDistinctionmates[1](null UNMAPPED, true, false) |
0s |
passed |
| testUnmappedUnpairedDistinctionmates[2](null UNMAPPED, true, true) |
0s |
passed |
| testUnmappedUnpairedDistinctionmates[3](null UNMAPPED, false, false) |
0s |
passed |