Class org.broadinstitute.hellbender.utils.reference.TwoBitReferenceUnitTest
Tests
| Test |
Duration |
Result |
| testGetSequenceDictionary |
0.032s |
passed |
| testInvalidIntervals[0](chr1:1-100) |
0.009s |
passed |
| testInvalidIntervals[1](chr20:1-64444168) |
0.023s |
passed |
| testInvalidIntervals[2](chr20:1-64445000) |
0.009s |
passed |
| testInvalidIntervals[3](chr20:64444168-64445000) |
0.021s |
passed |
| testMaskedBases[0](chrMaskTest:1-180, TTCCAttgTTGTGATTTTGTGctaTTAAAATGATCAAAACANNNCCCTTAAAAATCTTATTCTAACCTCTCAANNNCTTTTAAAaatgaNNNATTTCAGTACAGTCGGATGCATCTGTAAAAGATAAAAAtaTaACATTGATTAGTTTgCAAAAATAATTGTTTGACCCCAGTTAAGNga) |
0.001s |
passed |
| testMaskedBases[1](chrMaskTest:6-8, ttg) |
0.001s |
passed |
| testMaskedBases[2](chrMaskTest:5-9, AttgT) |
0s |
passed |
| testMaskedBases[3](chrMaskTest:7-23, tgTTGTGATTTTGTGct) |
0s |
passed |
| testMaskedBases[4](chrMaskTest:85-92, aatgaNNN) |
0s |
passed |
| testMaskedReferenceWithUppercasing |
0.001s |
passed |
| testQueryValidSubinterval[0](chr20:60100-60200) |
0.018s |
passed |
| testQueryValidSubinterval[1](chr20:59950-60100) |
0.027s |
passed |
| testQueryValidSubinterval[2](chr20:28646100-28648200) |
0.017s |
passed |
| testQueryValidSubinterval[3](chr21:20000000-20001000) |
0.026s |
passed |
| testQueryValidSubinterval[4](chr21_KI270873v1_alt:100000-101000) |
0.019s |
passed |
| testReadEntireReference |
33.659s |
passed |