| Test |
Duration |
Result |
| testAgainstExampleGVCF |
0.031s |
passed |
| testBadPartitionsThrowException[0](null) |
0s |
passed |
| testBadPartitionsThrowException[1]([]) |
0.001s |
passed |
| testBadPartitionsThrowException[2]([10, 1, 30]) |
0s |
passed |
| testBadPartitionsThrowException[3]([-1, 1]) |
0s |
passed |
| testBadPartitionsThrowException[4]([1, null, 10]) |
0s |
passed |
| testBadPartitionsThrowException[5]([1, 1, 10]) |
0s |
passed |
| testBadPartitionsThrowException[6]([1, 10, 101]) |
0s |
passed |
| testBandingUsingPP |
0.001s |
passed |
| testCheckError |
0.001s |
passed |
| testClose |
0s |
passed |
| testCloseDoesntEmitsLastVariantWhenNonRef |
0s |
passed |
| testCloseEmitsLastVariant |
0s |
passed |
| testCrossingContigBoundaryFromNonRefToLowerPositionsRef |
0s |
passed |
| testCrossingContigBoundaryNonRef |
0.001s |
passed |
| testCrossingContigBoundaryNonRefThenNonRef |
0s |
passed |
| testCrossingContigBoundaryRef |
0s |
passed |
| testCrossingContigBoundaryToLowerPositionsRef |
0s |
passed |
| testDeletion |
0s |
passed |
| testEmittingTwoBands |
0s |
passed |
| testGoodPartitions[0]([1], [[0..1), [1..100)]) |
0.001s |
passed |
| testGoodPartitions[1]([1, 2, 3], [[0..1), [1..2), [2..3), [3..100)]) |
0s |
passed |
| testGoodPartitions[2]([1, 10], [[0..1), [1..10), [10..100)]) |
0s |
passed |
| testGoodPartitions[3]([1, 10, 30], [[0..1), [1..10), [10..30), [30..100)]) |
0s |
passed |
| testGoodPartitions[4]([1, 10, 98], [[0..1), [1..10), [10..98), [98..100)]) |
0.001s |
passed |
| testGoodPartitions[5]([1, 10, 99], [[0..1), [1..10), [10..99), [99..100)]) |
0s |
passed |
| testGoodPartitions[6]([1, 10, 100], [[0..1), [1..10), [10..100)]) |
0s |
passed |
| testGoodPartitions[7]([100], [[0..100)]) |
0s |
passed |
| testHeaderSetting |
0s |
passed |
| testHeaderWriting |
0s |
passed |
| testHomRefAlt |
0s |
passed |
| testInputBlocks |
0s |
passed |
| testNonContiguousBlocks |
0s |
passed |
| testOverlappingDeletions |
0s |
passed |
| testToVCFHeaderLine |
0s |
passed |
| testVariantForcesNonRef |
0s |
passed |
| writeGVCFToDisk[0]([[VC test @ 1:1 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 33 DP 10 AD 1,2 PL 0,33,53]] filters=, [VC test @ 1:2 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 31 DP 10 AD 1,2 PL 0,31,51]] filters=, [VC test @ 1:3 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 30 DP 10 AD 1,2 PL 0,30,50]] filters=], [org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@4ab9d160]) |
0.006s |
passed |
| writeGVCFToDisk[1]([[VC test @ 1:1 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 10 DP 10 AD 1,2 PL 0,10,30]] filters=, [VC test @ 2:2 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 10 DP 10 AD 1,2 PL 0,10,30]] filters=], [org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@2fdf7da2, org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@43b172e3]) |
0.005s |
passed |
| writeGVCFToDisk[2]([[VC test @ 1:1 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 30 DP 10 AD 1,2 PL 0,30,50]] filters=, [VC test @ 1:2 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 15 DP 10 AD 1,2 PL 0,15,35]] filters=, [VC test @ 1:3 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 15 DP 10 AD 1,2 PL 0,15,35]] filters=], [org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@1cb849b2, org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@6fe2a366]) |
0.004s |
passed |
| writeGVCFToDisk[3]([[VC test @ 1:100-104 Q. of type=INDEL alleles=[AAAAA*, A] attr={} GT=[[XXYYZZ AAAAA*/A GQ 50 DP 10 AD 1,2 PL 0,50,70]] filters=], [org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@2db461b5]) |
0.005s |
passed |
| writeGVCFToDisk[4]([[VC test @ 1:1 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 15 DP 10 AD 1,2 PL 0,15,35]] filters=, [VC test @ 1:2 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 16 DP 10 AD 1,2 PL 0,16,36]] filters=, [VC test @ 1:3 Q. of type=SNP alleles=[G*, A] attr={} GT=[[XXYYZZ G*/A GQ 30 DP 10 AD 1,2 PL 0,30,50]] filters=, [VC test @ 1:4 Q. of type=SYMBOLIC alleles=[G*, <NON_REF>] attr={} GT=[[XXYYZZ G*/G* GQ 15 DP 10 AD 1,2 PL 0,15,35]] filters=], [org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@55881f40, org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@474ce6b8, org.broadinstitute.hellbender.utils.variant.writers.GVCFWriterUnitTest$MinimalData@248b2b61]) |
0.009s |
passed |