Class org.broadinstitute.hellbender.metrics.MetricsUtilsTest

all > org.broadinstitute.hellbender.metrics > MetricsUtilsTest
4

tests
1

failures
3

ignored
1.504s

duration
0%

successful

Failed tests

setupMiniCluster

org.apache.hadoop.ipc.RemoteException(java.lang.NoClassDefFoundError): Could not initialize class org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol.getDescriptor(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.hdfs.protocol.proto.ClientNamenodeProtocolProtos$ClientNamenodeProtocol$2.getDescriptorForType(ClientNamenodeProtocolProtos.java)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:604)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:589)
	at org.apache.hadoop.ipc.ProtobufRpcEngine2$Server$ProtoBufRpcInvoker.call(ProtobufRpcEngine2.java:573)
	at org.apache.hadoop.ipc.RPC$Server.call(RPC.java:1227)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1246)
	at org.apache.hadoop.ipc.Server$RpcCall.run(Server.java:1169)
	at java.base/java.security.AccessController.doPrivileged(AccessController.java:712)
	at java.base/javax.security.auth.Subject.doAs(Subject.java:439)
	at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1953)
	at org.apache.hadoop.ipc.Server$Handler.run(Server.java:3203)

	at app//org.apache.hadoop.ipc.Client.getRpcResponse(Client.java:1584)
	at app//org.apache.hadoop.ipc.Client.call(Client.java:1529)
	at app//org.apache.hadoop.ipc.Client.call(Client.java:1426)
	at app//org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:258)
	at app//org.apache.hadoop.ipc.ProtobufRpcEngine2$Invoker.invoke(ProtobufRpcEngine2.java:139)
	at app/jdk.proxy3/jdk.proxy3.$Proxy70.getDatanodeReport(Unknown Source)
	at app//org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.lambda$getDatanodeReport$28(ClientNamenodeProtocolTranslatorPB.java:713)
	at app//org.apache.hadoop.ipc.internal.ShadedProtobufHelper.ipc(ShadedProtobufHelper.java:160)
	at app//org.apache.hadoop.hdfs.protocolPB.ClientNamenodeProtocolTranslatorPB.getDatanodeReport(ClientNamenodeProtocolTranslatorPB.java:713)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:437)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeMethod(RetryInvocationHandler.java:170)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invoke(RetryInvocationHandler.java:162)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler$Call.invokeOnce(RetryInvocationHandler.java:100)
	at app//org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:366)
	at app/jdk.proxy3/jdk.proxy3.$Proxy71.getDatanodeReport(Unknown Source)
	at app//org.apache.hadoop.hdfs.DFSClient.datanodeReport(DFSClient.java:2134)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2869)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.waitActive(MiniDFSCluster.java:2920)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.startDataNodes(MiniDFSCluster.java:1848)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.initMiniDFSCluster(MiniDFSCluster.java:995)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster.<init>(MiniDFSCluster.java:594)
	at app//org.apache.hadoop.hdfs.MiniDFSCluster$Builder.build(MiniDFSCluster.java:533)
	at app//org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:30)
	at app//org.broadinstitute.hellbender.testutils.MiniClusterUtils.getMiniCluster(MiniClusterUtils.java:38)
	at app//org.broadinstitute.hellbender.metrics.MetricsUtilsTest.setupMiniCluster(MetricsUtilsTest.java:24)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at app//org.testng.internal.invokers.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:139)
	at app//org.testng.internal.invokers.MethodInvocationHelper.invokeMethodConsideringTimeout(MethodInvocationHelper.java:69)
	at app//org.testng.internal.invokers.ConfigInvoker.invokeConfigurationMethod(ConfigInvoker.java:361)
	at app//org.testng.internal.invokers.ConfigInvoker.invokeConfigurations(ConfigInvoker.java:296)
	at app//org.testng.internal.invokers.TestMethodWorker.invokeBeforeClassMethods(TestMethodWorker.java:180)
	at app//org.testng.internal.invokers.TestMethodWorker.run(TestMethodWorker.java:122)
	at java.base@17.0.6/java.util.ArrayList.forEach(ArrayList.java:1511)
	at app//org.testng.TestRunner.privateRun(TestRunner.java:829)
	at app//org.testng.TestRunner.run(TestRunner.java:602)
	at app//org.testng.SuiteRunner.runTest(SuiteRunner.java:437)
	at app//org.testng.SuiteRunner.runSequentially(SuiteRunner.java:431)
	at app//org.testng.SuiteRunner.privateRun(SuiteRunner.java:391)
	at app//org.testng.SuiteRunner.run(SuiteRunner.java:330)
	at app//org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
	at app//org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:95)
	at app//org.testng.TestNG.runSuitesSequentially(TestNG.java:1256)
	at app//org.testng.TestNG.runSuitesLocally(TestNG.java:1176)
	at app//org.testng.TestNG.runSuites(TestNG.java:1099)
	at app//org.testng.TestNG.run(TestNG.java:1067)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.runTests(TestNGTestClassProcessor.java:153)
	at org.gradle.api.internal.tasks.testing.testng.TestNGTestClassProcessor.stop(TestNGTestClassProcessor.java:95)
	at org.gradle.api.internal.tasks.testing.SuiteTestClassProcessor.stop(SuiteTestClassProcessor.java:63)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at java.base@17.0.6/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
	at java.base@17.0.6/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.base@17.0.6/java.lang.reflect.Method.invoke(Method.java:568)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36)
	at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24)
	at org.gradle.internal.dispatch.ContextClassLoaderDispatch.dispatch(ContextClassLoaderDispatch.java:33)
	at org.gradle.internal.dispatch.ProxyDispatchAdapter$DispatchingInvocationHandler.invoke(ProxyDispatchAdapter.java:92)
	at jdk.proxy1/jdk.proxy1.$Proxy4.stop(Unknown Source)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker$3.run(TestWorker.java:200)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.executeAndMaintainThreadName(TestWorker.java:132)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:103)
	at org.gradle.api.internal.tasks.testing.worker.TestWorker.execute(TestWorker.java:63)
	at org.gradle.process.internal.worker.child.ActionExecutionWorker.execute(ActionExecutionWorker.java:56)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:121)
	at org.gradle.process.internal.worker.child.SystemApplicationClassLoaderWorker.call(SystemApplicationClassLoaderWorker.java:71)
	at app//worker.org.gradle.process.internal.worker.GradleWorkerMain.run(GradleWorkerMain.java:69)
	at app//worker.org.gradle.process.internal.worker.GradleWorkerMain.main(GradleWorkerMain.java:74)

Tests

Test Duration Result
setupMiniCluster 1.504s failed
testSaveMetrics[0](metrics) - ignored
testSaveMetrics[1](gs://hellbender-test-logs/staging/) - ignored
testSaveMetrics[2](null) - ignored

Standard error

22:32:07.398 ERROR DataNode - Command processor encountered interrupt and exit.
22:32:07.397 ERROR DataNode - Initialization failed for Block pool <registering> (Datanode Uuid unassigned) service to localhost/127.0.0.1:33363. Exiting. 
java.io.IOException: DN shut down before block pool connected
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.retrieveNamespaceInfo(BPServiceActor.java:276) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.connectToNNAndHandshake(BPServiceActor.java:306) ~[hadoop-hdfs-3.4.0.jar:?]
	at org.apache.hadoop.hdfs.server.datanode.BPServiceActor.run(BPServiceActor.java:889) [hadoop-hdfs-3.4.0.jar:?]
	at java.base/java.lang.Thread.run(Thread.java:833) [?:?]