Test Summary

200

tests

4

failures

3

ignored

16m35.92s

duration

97%

successful

Packages

Package Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine 17 0 0 22.684s 100%
org.broadinstitute.hellbender.engine.spark.datasources 1 0 0 2.632s 100%
org.broadinstitute.hellbender.metrics 4 1 3 1.504s 0%
org.broadinstitute.hellbender.testutils 1 0 0 2.504s 100%
org.broadinstitute.hellbender.tools 17 0 0 3m22.10s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections 8 0 0 24.652s 100%
org.broadinstitute.hellbender.tools.funcotator 5 0 0 0.740s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources 9 0 0 34.656s 100%
org.broadinstitute.hellbender.tools.genomicsdb 26 0 0 5m30.10s 100%
org.broadinstitute.hellbender.tools.reference 4 0 0 10.376s 100%
org.broadinstitute.hellbender.tools.spark 12 3 0 58.833s 75%
org.broadinstitute.hellbender.tools.spark.pipelines 6 0 0 2m40.81s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr 14 0 0 57.371s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller 1 0 0 5.755s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils 1 0 0 3.880s 100%
org.broadinstitute.hellbender.utils.gcs 19 0 0 7.505s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery 8 0 0 16.651s 100%
org.broadinstitute.hellbender.utils.io 2 0 0 3.481s 100%
org.broadinstitute.hellbender.utils.nio 35 0 0 19.185s 100%
org.broadinstitute.hellbender.utils.read 8 0 0 29.199s 100%
org.broadinstitute.hellbender.utils.reference 1 0 0 0.067s 100%
org.broadinstitute.hellbender.utils.tsv 1 0 0 1.238s 100%

Classes

Class Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine.FeatureInputUnitTest 4 0 0 0.136s 100%
org.broadinstitute.hellbender.engine.ReadWalkerGCSSupportIntegrationTest 6 0 0 13.485s 100%
org.broadinstitute.hellbender.engine.ReadsPathDataSourceUnitTest 1 0 0 0.776s 100%
org.broadinstitute.hellbender.engine.VariantWalkerGCSSupportIntegrationTest 6 0 0 8.287s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSourceUnitTest 1 0 0 2.632s 100%
org.broadinstitute.hellbender.metrics.MetricsUtilsTest 4 1 3 1.504s 0%
org.broadinstitute.hellbender.testutils.VariantContextTestUtilsUnitTest 1 0 0 2.504s 100%
org.broadinstitute.hellbender.tools.CRAMIssue8768DetectorIntegrationTest 7 0 0 1m51.99s 100%
org.broadinstitute.hellbender.tools.GatherVcfsCloudIntegrationTest 3 0 0 1m14.17s 100%
org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest 1 0 0 2.083s 100%
org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest 6 0 0 13.860s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleCountCollectionUnitTest 8 0 0 24.652s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorDataSourceDownloaderIntegrationTest 4 0 0 0.408s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorUtilsUnitTest 1 0 0 0.332s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DataSourceUtilsUnitTest 1 0 0 2.592s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest 8 0 0 32.064s 100%
org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBImportIntegrationTest 26 0 0 5m30.10s 100%
org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibilityIntegrationTest 2 0 0 4.160s 100%
org.broadinstitute.hellbender.tools.reference.CompareReferencesIntegrationTest 2 0 0 6.216s 100%
org.broadinstitute.hellbender.tools.spark.BaseRecalibratorSparkIntegrationTest 9 0 0 56.667s 100%
org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest 3 3 0 2.166s 0%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSparkIntegrationTest 4 0 0 1m50.87s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintVariantsSparkIntegrationTest 2 0 0 49.941s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest 14 0 0 57.371s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerIntegrationTest 1 0 0 5.755s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest 1 0 0 3.880s 100%
org.broadinstitute.hellbender.utils.gcs.BucketUtilsUnitTest 19 0 0 7.505s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery.BigQueryUtilsUnitTest 8 0 0 16.651s 100%
org.broadinstitute.hellbender.utils.io.IOUtilsUnitTest 2 0 0 3.481s 100%
org.broadinstitute.hellbender.utils.nio.GcsNioIntegrationTest 5 0 0 1.175s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterResultsUnitTest 6 0 0 3.560s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterUnitTest 23 0 0 14.319s 100%
org.broadinstitute.hellbender.utils.nio.PathLineIteratorUnitTest 1 0 0 0.131s 100%
org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest 8 0 0 29.199s 100%
org.broadinstitute.hellbender.utils.reference.ReferenceUtilsUnitTest 1 0 0 0.067s 100%
org.broadinstitute.hellbender.utils.tsv.SimpleCSVWriterWrapperWithHeaderUnitTest 1 0 0 1.238s 100%