Class org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testGCSInputsAndOutputs[0](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, false, null) |
1.644s |
passed |
| testGCSInputsAndOutputs[1](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, true, null) |
2.293s |
passed |
| testHttpPaths[0](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
3.428s |
passed |
| testHttpPaths[1](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1743204736&Signature=WjBe1VrVn%2BhviUyfwYvDNtP4OV%2Fay31PuDoCb5Jy9GbydEoSPhAm%2FqB6eRHOKX7DltpfFioshO7LtmknirQOOla0VSCHzrUFFHS8ccS%2FIIMk9BmQ8Mlhz8YKx1wBAT%2BT9iTH0jw3RtOmBuY%2BPEesU3D%2F7kbcURCs0QEF657TN1duxHBgg8OZ7V3ZeqsoKMPvScSK7rkZrIvBD8u%2FRy93ab8Is94ryvYEzQIAFPPdvQH%2BJpYkJFzw1%2B5RXADy%2FT%2BfbehqUmHxdjRvRNECeD6KwKEGXsSg6enBRWSAr8EOo3rd97%2Bsokq%2FiHAQQyIahpvFXx%2B9rv6Is2E7u36%2BeLAqWA%3D%3D, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1743204736&Signature=Spr53XDpGGtaaNzbmOKoIR1QMd6DIntGq%2BUaqEYZl1JVddPunHbD6%2BrMIwAf7qFE%2FVzVpYMAikzmx7seaLgEobjfWFGXpba2zGojvZpZjQ3I3YApO%2FWPHB%2B7NaRl%2FnUHkDyyoDgIBIYIoXkyC%2FvZo2%2FnXL%2B6GUehAeWMusqHkBdwRzal%2FuJDmCswAzI68od3VhS7IEr486%2FR4F4nKjmQPPcc7LiO4dvuEgqjXmuc6o93Xg8lTuyjoirvEYYmkmfcCUrmf%2B%2Bgmw9WA0%2Fsm6PFuDM%2FMr2lA8bg%2BWmsdh13L6M96iVJ5Mz87AX0wIT5MRnb2E%2FW2vOCuQzFiXdWKUqEgw%3D%3D, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
2.956s |
passed |
| testHttpPaths[2](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
2.004s |
passed |
| testHttpPaths[3](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1743204736&Signature=cIOobMfmysRLfZVrfyuoeF7MPkcWNLin6WMyFcSg%2FjV9wCei2dwleedSEHAm8i4XMnGl0DEfGstK0%2BcGO4uAIx1zPnmWmWyulbgInjyrlDDRp9CyzpcJBkVttso698%2BR565Rtp%2FLCokGdff9H66pi7lU5a2RmDcHLb3t%2FukfT4VUuXuRJ1I2pLlnNRJ58CjFUn2exYTWcG5GYbgsw5niGZBJFhb6lv0jBZdKL%2BaE9gq%2BJY2hmiihvHRXU7t%2FUZ6QkailxpAXh5RPYcDvFRryBEEgBEj0nTq%2FK8QERalqWXFLdwJvB%2FagvY1FgvzCaJ9YKh11QKeIS28mv3Y%2F6kFQEw%3D%3D, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1743204736&Signature=Y2Ta4TdMi451JtyXAZ1Sxe7Be%2F%2BaobyH2c4yZajQ0DQDDoGBQ%2F88WP%2BxRFY8MNWjMdjLH%2FK1ub3n%2BaLtF7%2FUzdwE1oFoW9GvtVPwGqjlS4vVgv089Tq%2B%2FuRYcgWv5layzcARyWwpSxkklhqyH%2FnhuB3y1dWadI4bV%2F9XFpgR7vZHNlY7VOf4sesMD7lFA2OkaWjwj8w4gd%2FsSbiRdKPb1UGzzPT3OLc698udinW4xfdA8ihEPEAD9WZk05Os9RPB3at494c9fXbSHpfhIc%2FG0EF5TtIOwuoKr8Iac%2B9ewI4Wwusy5tMt7hr5jjU6dnQw94aEyATtEbyhXEZFKl9XDA%3D%3D, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
1.535s |
passed |
Standard error
[March 28, 2025 at 10:32:14 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:16 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:18 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:20 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:21 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:23 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:24 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:25 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:25 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:32:26 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000