Class org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testDbSnpDataSourceParsing[0](hg19, chr1:10318704-10318704, rs746945770, G*, A) | 4.032s | passed |
| testDbSnpDataSourceParsing[1](hg19, chrX:31213723-31213723, rs5972332, C*, T) | 3.973s | passed |
| testDbSnpDataSourceParsing[2](hg19, chrY:8551842-8551842, rs562075277, G*, A) | 3.988s | passed |
| testDbSnpDataSourceParsing[3](hg19, chrM:5005-5005, rs879008075, T*, C) | 3.766s | passed |
| testDbSnpDataSourceParsing[4](hg38, chr1:84349785-84349785, rs17131617, T*, C) | 4.191s | passed |
| testDbSnpDataSourceParsing[5](hg38, chrX:80688070-80688070, rs3122407, T*, C) | 3.620s | passed |
| testDbSnpDataSourceParsing[6](hg38, chrY:13355944-13355944, rs2032654, A*, G) | 4.543s | passed |
| testDbSnpDataSourceParsing[7](hg38, chrM:5131-5133, rs199476116, TAA*, T) | 3.951s | passed |
Standard error
22:38:06.396 INFO BlockManagerInfo - Removed broadcast_12_piece0 on localhost:38919 in memory (size: 2.4 KiB, free: 1920.0 MiB) 22:38:06.398 INFO BlockManagerInfo - Removed broadcast_11_piece0 on localhost:38919 in memory (size: 2.4 KiB, free: 1920.0 MiB) 22:38:08.662 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 22:38:12.562 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 22:38:16.683 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 22:38:20.681 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 22:38:24.577 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 22:38:28.153 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 22:38:32.223 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 22:38:36.967 INFO FeatureManager - Using codec VCFCodec to read file gs://broad-public-datasets/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz