Class org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyBQSRCloud[0](ApplyBQSR(args='')) |
7.778s |
passed |
| testApplyBQSRCloud[10](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
3.597s |
passed |
| testApplyBQSRCloud[11](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
3.807s |
passed |
| testApplyBQSRCloud[12](ApplyBQSR(args='--disable-sequence-dictionary-validationtrue')) |
3.210s |
passed |
| testApplyBQSRCloud[13](ApplyBQSR(args='--quantize-quals6--disable-sequence-dictionary-validationtrue')) |
3.133s |
passed |
| testApplyBQSRCloud[1](ApplyBQSR(args='-OQ')) |
4.912s |
passed |
| testApplyBQSRCloud[2](ApplyBQSR(args='--quantize-quals-1')) |
3.851s |
passed |
| testApplyBQSRCloud[3](ApplyBQSR(args='--quantize-quals6')) |
4.463s |
passed |
| testApplyBQSRCloud[4](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
4.628s |
passed |
| testApplyBQSRCloud[5](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
3.172s |
passed |
| testApplyBQSRCloud[6](ApplyBQSR(args='')) |
3.212s |
passed |
| testApplyBQSRCloud[7](ApplyBQSR(args='-OQ')) |
3.139s |
passed |
| testApplyBQSRCloud[8](ApplyBQSR(args='--quantize-quals-1')) |
3.337s |
passed |
| testApplyBQSRCloud[9](ApplyBQSR(args='--quantize-quals6')) |
5.132s |
passed |
Standard error
[March 28, 2025 at 10:47:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:21 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:29 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:36 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[March 28, 2025 at 10:47:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000