Class org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest

all > org.broadinstitute.hellbender.utils.read > ReadUtilsIntegrationTest

tests

failures

ignored

29.199s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testCreatePathSAMWriter[0](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.sam, src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.fasta, .cram, false, true, true, false)	6.483s	passed
testCreatePathSAMWriter[1](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, false, true, true, false)	4.442s	passed
testCreatePathSAMWriter[2](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, false, true, true, true)	2.127s	passed
testCreatePathSAMWriter[3](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, true, false)	4.258s	passed
testCreatePathSAMWriter[4](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, true, true)	2.073s	passed
testCreatePathSAMWriter[5](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, false, false)	3.931s	passed
testCreatePathSAMWriter[6](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, false, true)	1.716s	passed
testCreatePathSAMWriter[7](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, false, false, false)	4.169s	passed

Standard error

22:49:40.706 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/e6ce83fd-b014-4d38-8aab-b47c5bd715be.cram. Index file creation requires reads in coordinate sorted order.
22:49:47.165 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/157ae7d9-6013-4b38-ae15-ff3fe218dabb.bam. Index file creation requires reads in coordinate sorted order.
22:49:53.732 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/f25a1437-5c3b-4e7e-ab8b-2f618372af28.bam. Index file creation requires reads in coordinate sorted order.
22:50:00.065 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/64091f7c-5377-46e8-a1e5-233ce198d878.bam. Index file creation requires reads in coordinate sorted order.