Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest

1

tests

0

failures

0

ignored

2.033s

duration

100%

successful

Tests

Test Duration Result
testVCFIndexOnCloud 2.033s passed

Standard error

20:42:57.243 INFO  IndexFeatureFile - ------------------------------------------------------------
20:42:57.243 INFO  IndexFeatureFile - org.broadinstitute.hellbender.tools vUnavailable
20:42:57.243 INFO  IndexFeatureFile - For support and documentation go to https://software.broadinstitute.org/gatk/
20:42:57.243 INFO  IndexFeatureFile - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:42:57.243 INFO  IndexFeatureFile - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:42:57.243 INFO  IndexFeatureFile - Start Date/Time: June 12, 2025 at 8:42:57 PM UTC
20:42:57.243 INFO  IndexFeatureFile - ------------------------------------------------------------
20:42:57.243 INFO  IndexFeatureFile - ------------------------------------------------------------
20:42:57.244 INFO  IndexFeatureFile - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:42:57.244 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:42:57.244 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:42:57.244 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:42:57.244 INFO  IndexFeatureFile - Deflater: IntelDeflater
20:42:57.244 INFO  IndexFeatureFile - Inflater: IntelInflater
20:42:57.244 INFO  IndexFeatureFile - GCS max retries/reopens: 20
20:42:57.244 INFO  IndexFeatureFile - Requester pays: disabled
20:42:57.244 INFO  IndexFeatureFile - Initializing engine
20:42:57.244 INFO  IndexFeatureFile - Done initializing engine
20:42:57.953 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/testIndexOnCloud/f8c69df6-3175-4e4f-bc9a-bda452ab9f81.vcf
20:42:58.129 INFO  ProgressMeter - Starting traversal
20:42:58.130 INFO  ProgressMeter -        Current Locus  Elapsed Minutes     Records Processed   Records/Minute
20:42:58.132 INFO  ProgressMeter -             unmapped              0.0                    26         780000.0
20:42:58.132 INFO  ProgressMeter - Traversal complete. Processed 26 total records in 0.0 minutes.
20:42:58.578 INFO  IndexFeatureFile - Successfully wrote index to /staging/testIndexOnCloud/f8c69df6-3175-4e4f-bc9a-bda452ab9f81.vcf.idx
20:42:58.578 INFO  IndexFeatureFile - Shutting down engine
[June 12, 2025 at 8:42:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2726297600