Test Summary

201

tests

7

failures

0

ignored

18m48.82s

duration

96%

successful

Failed tests

Packages

Package Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine 17 0 0 1m54.26s 100%
org.broadinstitute.hellbender.engine.spark.datasources 1 0 0 6.459s 100%
org.broadinstitute.hellbender.metrics 3 0 0 1.208s 100%
org.broadinstitute.hellbender.testutils 1 0 0 3.314s 100%
org.broadinstitute.hellbender.tools 17 0 0 8m24.57s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections 8 0 0 50.992s 100%
org.broadinstitute.hellbender.tools.funcotator 5 0 0 0.596s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources 9 0 0 17.420s 100%
org.broadinstitute.hellbender.tools.genomicsdb 26 0 0 3m28.54s 100%
org.broadinstitute.hellbender.tools.reference 4 0 0 7.341s 100%
org.broadinstitute.hellbender.tools.spark 12 7 0 16.760s 41%
org.broadinstitute.hellbender.tools.spark.pipelines 6 0 0 1m30.80s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr 14 0 0 32.060s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller 3 0 0 22.450s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils 1 0 0 2.725s 100%
org.broadinstitute.hellbender.utils.gcs 19 0 0 4.518s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery 8 0 0 16.091s 100%
org.broadinstitute.hellbender.utils.io 2 0 0 1.826s 100%
org.broadinstitute.hellbender.utils.nio 35 0 0 9.204s 100%
org.broadinstitute.hellbender.utils.read 8 0 0 16.400s 100%
org.broadinstitute.hellbender.utils.reference 1 0 0 0.146s 100%
org.broadinstitute.hellbender.utils.tsv 1 0 0 1.144s 100%

Classes

Class Tests Failures Ignored Duration Success rate
org.broadinstitute.hellbender.engine.FeatureInputUnitTest 4 0 0 0.143s 100%
org.broadinstitute.hellbender.engine.ReadWalkerGCSSupportIntegrationTest 6 0 0 1m6.57s 100%
org.broadinstitute.hellbender.engine.ReadsPathDataSourceUnitTest 1 0 0 0.693s 100%
org.broadinstitute.hellbender.engine.VariantWalkerGCSSupportIntegrationTest 6 0 0 46.847s 100%
org.broadinstitute.hellbender.engine.spark.datasources.ReadsSparkSourceUnitTest 1 0 0 6.459s 100%
org.broadinstitute.hellbender.metrics.MetricsUtilsTest 3 0 0 1.208s 100%
org.broadinstitute.hellbender.testutils.VariantContextTestUtilsUnitTest 1 0 0 3.314s 100%
org.broadinstitute.hellbender.tools.CRAMIssue8768DetectorIntegrationTest 7 0 0 6m25.49s 100%
org.broadinstitute.hellbender.tools.GatherVcfsCloudIntegrationTest 3 0 0 1m37.62s 100%
org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest 1 0 0 2.033s 100%
org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest 6 0 0 19.423s 100%
org.broadinstitute.hellbender.tools.copynumber.formats.collections.SimpleCountCollectionUnitTest 8 0 0 50.992s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorDataSourceDownloaderIntegrationTest 4 0 0 0.424s 100%
org.broadinstitute.hellbender.tools.funcotator.FuncotatorUtilsUnitTest 1 0 0 0.172s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DataSourceUtilsUnitTest 1 0 0 1.339s 100%
org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest 8 0 0 16.081s 100%
org.broadinstitute.hellbender.tools.genomicsdb.GenomicsDBImportIntegrationTest 26 0 0 3m28.54s 100%
org.broadinstitute.hellbender.tools.reference.CheckReferenceCompatibilityIntegrationTest 2 0 0 3.072s 100%
org.broadinstitute.hellbender.tools.reference.CompareReferencesIntegrationTest 2 0 0 4.269s 100%
org.broadinstitute.hellbender.tools.spark.BaseRecalibratorSparkIntegrationTest 9 7 0 10.132s 22%
org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest 3 0 0 6.628s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSparkIntegrationTest 4 0 0 1m6.62s 100%
org.broadinstitute.hellbender.tools.spark.pipelines.PrintVariantsSparkIntegrationTest 2 0 0 24.185s 100%
org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest 14 0 0 32.060s 100%
org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerIntegrationTest 3 0 0 22.450s 100%
org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest 1 0 0 2.725s 100%
org.broadinstitute.hellbender.utils.gcs.BucketUtilsUnitTest 19 0 0 4.518s 100%
org.broadinstitute.hellbender.utils.gvs.bigquery.BigQueryUtilsUnitTest 8 0 0 16.091s 100%
org.broadinstitute.hellbender.utils.io.IOUtilsUnitTest 2 0 0 1.826s 100%
org.broadinstitute.hellbender.utils.nio.GcsNioIntegrationTest 5 0 0 0.918s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterResultsUnitTest 6 0 0 1.876s 100%
org.broadinstitute.hellbender.utils.nio.NioFileCopierWithProgressMeterUnitTest 23 0 0 6.329s 100%
org.broadinstitute.hellbender.utils.nio.PathLineIteratorUnitTest 1 0 0 0.081s 100%
org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest 8 0 0 16.400s 100%
org.broadinstitute.hellbender.utils.reference.ReferenceUtilsUnitTest 1 0 0 0.146s 100%
org.broadinstitute.hellbender.utils.tsv.SimpleCSVWriterWrapperWithHeaderUnitTest 1 0 0 1.144s 100%