Class org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testGCSInputsAndOutputs[0](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, false, null) |
3.808s |
passed |
| testGCSInputsAndOutputs[1](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, true, null) |
1.459s |
passed |
| testHttpPaths[0](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
4.312s |
passed |
| testHttpPaths[1](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1749764079&Signature=I9MRhKPAYmEOIlMbldCJ0JUCnfl83iGmOCkjV3oWy26b%2FQMmPe62n7v%2FVLYytOZb%2FsRjhwle6HVlVnnZwhWMGjeEJtzUzf3Njx92hsG37%2FM4e8yXMZTbIAalFzYjqx7%2FAsEtu4rzPvZ7gyK8%2FMNQILvTKKoCp8obu%2FTr53tTuPZ4jwUhTxPbP6FojpxZBVlkpE9ApJ8oX%2FelQYkVD3ZQdvsLALLA2vydU3JRSPlAlEB38XA7BKSZxMdCQqTVoyVZfX1WEkkCQE2HkeuYTTh5%2BjBrPqvjV5vRwGtGMBCEKgKOqIInPhHpVh8qz5r7%2FcVAL5ASMRNzn5Yw8PWYHAJSrA%3D%3D, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1749764079&Signature=BeWZ1AhKoUV%2FlzpXTKeNCcQ%2BJWmedJ1Q%2BuLh5ELHhIrAmNwVMtvmo7cKlRX8JvQdwZOjLtK6OmOX2j3za0O8gJFqYEWM2pdhZBqgZpH7y1%2BpjvDDctPEWoLoYn71c9Q4JPiE6IaNagkyNU%2FA0kE5YsvDD7zLEMjiWCmK%2FMMr%2BFSGTc67c%2Fg5j7lZ6kYOA04vqxSkegV09JUe93pQ4iVcG4GqSjPolxZ4UxDqtZqKAmcFvnHXn0vMJXQi12K%2B4YPmIZL%2BkNI5pSnQv2iAex83AGTHqWjTEjacE%2Ft02VtAOBkW0b7enEGozChCWFZ0JEXMJ9xKvE21xwBTWmqlixonAQ%3D%3D, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
5.876s |
passed |
| testHttpPaths[2](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
2.273s |
passed |
| testHttpPaths[3](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1749764079&Signature=M9R9LX%2F9PpQSUOTg%2FbW%2BERdP9avS%2FW0fK1F3JA4VsqD7x9TqFvR2O3cl%2F1hPSIPM9th80SYhuxy7LJBBcEe31baMmU5afrNtZbR8%2F83IdSQ0Zcl%2B3ktrdBfIvOk63wQ1oLNKY%2BshtGU1M3E9o67GbFbSX0F3KpTMF4F4xs4n%2F7nQVZtAUJAn%2F2jimL8bVFHz1aJ8TcbYb5wG02n9yTd5WJ7Q40Q88YrJO3X3BCySNL5iRsoGXIQYFlkd1lkg4QGo3fcVBLbcoQsIrR4debpDCNaY6roxXzGB%2Fp3UtDCy4J45Zt1fPGQDtukZljZCIEpFFjB51NViObMa7iFb5e3K4A%3D%3D, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1749764079&Signature=Heo4Z05rio1ECBI5TxIxBh9V0ZbqHFCl8j%2Bm9z9co8kFQX4iaJ%2FYW9ywTuaAjbN0LQRRmKkEFUBR%2FjxWlqtkVK8FNyS6T6UvXjpRUvEMsj1Pp4xUB%2Fk84mZ6nAPBA0afUGiKd2V8I%2BC7IQYsAxRMimwB5tZopLEphxhoOSFKNPecJsODD3p1PRr4SLqIAf1tta3zUKg7TVkaeT67b6zz7Rg%2FVCWH9yod70FFOoHSpBkJXGusmsoPSL0mCkogIeYQdsB42H8phd5eBLEKmr38TVbTLCVMKCHZpJKxI8yYKRMwJWOTEomTeuOelcQ%2F39pgH2XFU57n5erHRs6Tms455g%3D%3D, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
1.695s |
passed |
Standard error
[June 12, 2025 at 8:34:37 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:39 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:42 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:43 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:45 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:49 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:51 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:51 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:52 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:34:53 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000