Class org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testDbSnpDataSourceParsing[0](hg19, chr1:10318704-10318704, rs746945770, G*, A) | 2.249s | passed |
| testDbSnpDataSourceParsing[1](hg19, chrX:31213723-31213723, rs5972332, C*, T) | 1.879s | passed |
| testDbSnpDataSourceParsing[2](hg19, chrY:8551842-8551842, rs562075277, G*, A) | 1.830s | passed |
| testDbSnpDataSourceParsing[3](hg19, chrM:5005-5005, rs879008075, T*, C) | 1.630s | passed |
| testDbSnpDataSourceParsing[4](hg38, chr1:84349785-84349785, rs17131617, T*, C) | 2.111s | passed |
| testDbSnpDataSourceParsing[5](hg38, chrX:80688070-80688070, rs3122407, T*, C) | 2.343s | passed |
| testDbSnpDataSourceParsing[6](hg38, chrY:13355944-13355944, rs2032654, A*, G) | 1.996s | passed |
| testDbSnpDataSourceParsing[7](hg38, chrM:5131-5133, rs199476116, TAA*, T) | 2.043s | passed |
Standard error
20:45:10.747 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 20:45:12.887 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 20:45:14.771 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 20:45:16.502 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz 20:45:18.283 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 20:45:20.422 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 20:45:22.848 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz 20:45:24.977 INFO FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz