Class org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest
Tests
| Test |
Duration |
Result |
| testCopyDirectory[0](gs://hellbender/test/resources/parallel_copy/, null, [Ljava.lang.String;@54ba7366, [Ljava.lang.String;@b692323) |
4.108s |
passed |
| testCopyDirectory[1](gs://hellbender/test/resources/parallel_copy/, foo*, [Ljava.lang.String;@671bda0b, [Ljava.lang.String;@7e24f4e2) |
0.901s |
passed |
| testCopyLargeFile |
1.619s |
passed |
Standard output
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[20:49:12] Executing test ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest:testCopyDirectory---input-gcs-path gs://hellbender/test/resources/parallel_copy/ --output-hdfs-directory hdfs://localhost:39465/user/runner/test_f20fac68-f58e-463b-bf20-2cc613c61bf0dir
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[20:49:16] Executing test ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest:testCopyDirectory---input-gcs-path gs://hellbender/test/resources/parallel_copy/ --input-file-glob foo* --output-hdfs-directory hdfs://localhost:33647/user/runner/test_5936d417-8379-480d-a14e-270b224af512dir
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[20:49:16] Executing test ParallelCopyGCSDirectoryIntoHDFSSparkIntegrationTest:testCopyLargeFile---input-gcs-path gs://hellbender/test/resources/huge/CEUTrio.HiSeq.WGS.b37.NA12878.chr1_4.bam.bai --output-hdfs-directory hdfs://localhost:34003/user/runner/test_f1eb1a55-1ffd-4b55-b2cf-95eb37601999dir
Standard error
[June 12, 2025 at 8:49:15 PM UTC] org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=893386752
20:49:15.551 ERROR DataNode - Command processor encountered interrupt and exit.
[June 12, 2025 at 8:49:16 PM UTC] org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=893386752
20:49:16.472 ERROR DataNode - Command processor encountered interrupt and exit.
[June 12, 2025 at 8:49:18 PM UTC] org.broadinstitute.hellbender.tools.spark.ParallelCopyGCSDirectoryIntoHDFSSpark done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=893386752
20:49:18.089 ERROR DataNode - Command processor encountered interrupt and exit.