Class org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyBQSRCloud[0](ApplyBQSR(args='')) |
5.383s |
passed |
| testApplyBQSRCloud[10](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
1.875s |
passed |
| testApplyBQSRCloud[11](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
1.892s |
passed |
| testApplyBQSRCloud[12](ApplyBQSR(args='--disable-sequence-dictionary-validationtrue')) |
2.067s |
passed |
| testApplyBQSRCloud[13](ApplyBQSR(args='--quantize-quals6--disable-sequence-dictionary-validationtrue')) |
1.940s |
passed |
| testApplyBQSRCloud[1](ApplyBQSR(args='-OQ')) |
2.633s |
passed |
| testApplyBQSRCloud[2](ApplyBQSR(args='--quantize-quals-1')) |
2.213s |
passed |
| testApplyBQSRCloud[3](ApplyBQSR(args='--quantize-quals6')) |
2.096s |
passed |
| testApplyBQSRCloud[4](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
2.159s |
passed |
| testApplyBQSRCloud[5](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
2.192s |
passed |
| testApplyBQSRCloud[6](ApplyBQSR(args='')) |
1.941s |
passed |
| testApplyBQSRCloud[7](ApplyBQSR(args='-OQ')) |
1.889s |
passed |
| testApplyBQSRCloud[8](ApplyBQSR(args='--quantize-quals-1')) |
1.886s |
passed |
| testApplyBQSRCloud[9](ApplyBQSR(args='--quantize-quals6')) |
1.894s |
passed |
Standard error
[June 12, 2025 at 8:50:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:28 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:36 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:38 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:40 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:42 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:50:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=629145600
[June 12, 2025 at 8:50:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=629145600
[June 12, 2025 at 8:50:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=629145600