| Test |
Duration |
Result |
| testGetFieldFail[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, TESTFIELD_OMICRON) |
0s |
passed |
| testGetFieldFail[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, hugoSymmbol) |
0s |
passed |
| testGetFieldFail[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, GENCODE_hugoSymbol) |
0s |
passed |
| testGetFieldNames[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@babe12b9, [Gencode_TEST_VERSION_hugoSymbol, Gencode_TEST_VERSION_ncbiBuild, Gencode_TEST_VERSION_chromosome, Gencode_TEST_VERSION_start, Gencode_TEST_VERSION_end, Gencode_TEST_VERSION_variantClassification, Gencode_TEST_VERSION_secondaryVariantClassification, Gencode_TEST_VERSION_variantType, Gencode_TEST_VERSION_refAllele, Gencode_TEST_VERSION_tumorSeqAllele1, Gencode_TEST_VERSION_tumorSeqAllele2, Gencode_TEST_VERSION_genomeChange, Gencode_TEST_VERSION_annotationTranscript, Gencode_TEST_VERSION_transcriptStrand, Gencode_TEST_VERSION_transcriptExon, Gencode_TEST_VERSION_transcriptPos, Gencode_TEST_VERSION_cDnaChange, Gencode_TEST_VERSION_codonChange, Gencode_TEST_VERSION_proteinChange, Gencode_TEST_VERSION_gcContent, Gencode_TEST_VERSION_referenceContext, Gencode_TEST_VERSION_otherTranscripts]) |
0.001s |
passed |
| testGetField[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, Gencode_TEST_VERSION_hugoSymbol, TESTGENE) |
0s |
passed |
| testGetField[10](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@aee9c5e3, end, OVERRIDE) |
0s |
passed |
| testGetField[11](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, variantClassification, NONSENSE) |
0.001s |
passed |
| testGetField[12](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9c4e1acb, variantClassification, OVERRIDE) |
0s |
passed |
| testGetField[13](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, secondaryVariantClassification, INTRON) |
0s |
passed |
| testGetField[14](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@281788e3, secondaryVariantClassification, OVERRIDE) |
0s |
passed |
| testGetField[15](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, variantType, SNP) |
0s |
passed |
| testGetField[16](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@34dbf7cb, variantType, OVERRIDE) |
0s |
passed |
| testGetField[17](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, refAllele, A) |
0s |
passed |
| testGetField[18](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@87da0be3, refAllele, OVERRIDE) |
0s |
passed |
| testGetField[19](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, tumorSeqAllele1, A) |
0s |
passed |
| testGetField[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, hugoSymbol, TESTGENE) |
0s |
passed |
| testGetField[20](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@613d14cb, tumorSeqAllele1, OVERRIDE) |
0s |
passed |
| testGetField[21](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, tumorSeqAllele2, T) |
0s |
passed |
| testGetField[22](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ec614ee3, tumorSeqAllele2, OVERRIDE) |
0s |
passed |
| testGetField[23](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, genomeChange, big_%20_changes) |
0s |
passed |
| testGetField[24](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@7d4171cb, genomeChange, OVERRIDE) |
0s |
passed |
| testGetField[25](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, annotationTranscript, T1) |
0s |
passed |
| testGetField[26](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@3fdd51e3, annotationTranscript, OVERRIDE) |
0s |
passed |
| testGetField[27](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, transcriptStrand, 3') |
0s |
passed |
| testGetField[28](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@98b90ecb, transcriptStrand, OVERRIDE) |
0s |
passed |
| testGetField[29](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, transcriptExon, 1) |
0s |
passed |
| testGetField[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c0f1f51e, hugoSymbol, GARBAGEDAY) |
0s |
passed |
| testGetField[30](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@387e14e3, transcriptExon, OVERRIDE) |
0s |
passed |
| testGetField[31](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, transcriptPos, 1) |
0s |
passed |
| testGetField[32](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@7773ebcb, transcriptPos, OVERRIDE) |
0s |
passed |
| testGetField[33](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, cDnaChange, A) |
0s |
passed |
| testGetField[34](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@587397e3, cDnaChange, OVERRIDE) |
0.001s |
passed |
| testGetField[35](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, codonChange, ATC) |
0s |
passed |
| testGetField[36](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@914208cb, codonChange, OVERRIDE) |
0s |
passed |
| testGetField[37](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, proteinChange, Lys) |
0s |
passed |
| testGetField[38](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ededdae3, proteinChange, OVERRIDE) |
0s |
passed |
| testGetField[39](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, gcContent, 1.0) |
0s |
passed |
| testGetField[3](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, ncbiBuild, BUILD1) |
0s |
passed |
| testGetField[40](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@11f365cb, gcContent, OVERRIDE) |
0s |
passed |
| testGetField[41](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, referenceContext, ATGCGCAT) |
0s |
passed |
| testGetField[42](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@131cdde3, referenceContext, OVERRIDE) |
0s |
passed |
| testGetField[43](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, otherTranscripts, ONE/TWO/THREE) |
0s |
passed |
| testGetField[44](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@d95802cb, otherTranscripts, OVERRIDE) |
0.001s |
passed |
| testGetField[4](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@3b6c20cb, ncbiBuild, OVERRIDE) |
0s |
passed |
| testGetField[5](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, chromosome, chr1) |
0s |
passed |
| testGetField[6](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ca20c2e3, chromosome, OVERRIDE) |
0s |
passed |
| testGetField[7](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, start, 1) |
0s |
passed |
| testGetField[8](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@efc37dcb, start, OVERRIDE) |
0s |
passed |
| testGetField[9](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5ff39517, end, 100) |
0s |
passed |
| testVariantClassificationSeverityOverride |
0s |
passed |