Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest

17:42:11.925 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:42:11.929 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression10968017686903930402.so: /tmp/libgkl_compression10968017686903930402.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:42:11.929 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:42:11.932 WARN  NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression9926876571036540989.so: /tmp/libgkl_compression9926876571036540989.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:42:11.933 INFO  IndexFeatureFile - ------------------------------------------------------------
17:42:11.933 INFO  IndexFeatureFile - org.broadinstitute.hellbender.tools vUnavailable
17:42:11.934 INFO  IndexFeatureFile - For support and documentation go to https://software.broadinstitute.org/gatk/
17:42:11.934 INFO  IndexFeatureFile - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:42:11.934 INFO  IndexFeatureFile - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:42:11.934 INFO  IndexFeatureFile - Start Date/Time: October 27, 2025 at 5:42:11 PM UTC
17:42:11.934 INFO  IndexFeatureFile - ------------------------------------------------------------
17:42:11.934 INFO  IndexFeatureFile - ------------------------------------------------------------
17:42:11.934 INFO  IndexFeatureFile - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:42:11.934 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:42:11.934 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:42:11.934 INFO  IndexFeatureFile - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:42:11.935 INFO  IndexFeatureFile - Deflater: JdkDeflater
17:42:11.935 INFO  IndexFeatureFile - Inflater: JdkInflater
17:42:11.935 INFO  IndexFeatureFile - GCS max retries/reopens: 20
17:42:11.935 INFO  IndexFeatureFile - Requester pays: disabled
17:42:11.935 INFO  IndexFeatureFile - Initializing engine
17:42:11.935 INFO  IndexFeatureFile - Done initializing engine
17:42:13.032 INFO  FeatureManager - Using codec VCFCodec to read file gs://hellbender-test-logs/staging/testIndexOnCloud/e0d0e3c8-0f41-4187-a3c1-75dcc3a19602.vcf
17:42:13.285 INFO  ProgressMeter - Starting traversal
17:42:13.285 INFO  ProgressMeter -        Current Locus  Elapsed Minutes     Records Processed   Records/Minute
17:42:13.286 INFO  ProgressMeter -             unmapped              0.0                    26        1560000.0
17:42:13.286 INFO  ProgressMeter - Traversal complete. Processed 26 total records in 0.0 minutes.
17:42:13.905 INFO  IndexFeatureFile - Successfully wrote index to /staging/testIndexOnCloud/e0d0e3c8-0f41-4187-a3c1-75dcc3a19602.vcf.idx
17:42:13.905 INFO  IndexFeatureFile - Shutting down engine
[October 27, 2025 at 5:42:13 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1090519040