Test Summary
|
87%
successful |
Failed tests
- GenomicsDBImportIntegrationTest. testDifferentThreadValuesFromABucket[0](1)
- GenomicsDBImportIntegrationTest. testDifferentThreadValuesFromABucket[1](2)
- GenomicsDBImportIntegrationTest. testDifferentThreadValuesFromABucket[2](5)
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[0](HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00096.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00096.g.vcf.gz.tbi HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.gz.tbi NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/NA19625.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/NA19625.g.vcf.gz.tbi )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[1](HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00096.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00096.g.vcf.idx HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.idx NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/NA19625.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/NA19625.g.vcf.idx )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[2](HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/HG00096.g.vcf.gz HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.gz.tbi NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/NA19625.g.vcf.gz )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[3](HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/HG00096.g.vcf HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.idx NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/NA19625.g.vcf )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[4](NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/NA19625.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/NA19625.g.vcf.gz.tbi HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.gz.tbi HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00096.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00096.g.vcf.gz.tbi )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[5](NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/NA19625.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/NA19625.g.vcf.idx HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.idx HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00096.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00096.g.vcf.idx )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[6](NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/NA19625.g.vcf.gz HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf.gz gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.gz.tbi HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/HG00096.g.vcf.gz )
- GenomicsDBImportIntegrationTest. testExplicitIndicesInSampleNameMapInTheCloud[7](NA19625 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/NA19625.g.vcf HG00268 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_without_indices/HG00268.g.vcf gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcf_indices_only/HG00268.g.vcf.idx HG00096 gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/genomicsdb/gvcfs_with_indices/HG00096.g.vcf )
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputs
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatchesNativeReader[0](1)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatchesNativeReader[1](2)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatchesNativeReader[2](3)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatchesNativeReader[3](4)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatchesNativeReader[4](100)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatches[0](1)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatches[1](2)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatches[2](3)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatches[3](4)
- GenomicsDBImportIntegrationTest. testGenomicsDBImportGCSInputsInBatches[4](100)
- GenomicsDBImportIntegrationTest. testWriteToAndQueryFromGCS
- GenomicsDBImportIntegrationTest. testWriteToAndQueryFromGCSUsingConnector
- GenomicsDBImportIntegrationTest. testWriteToExistingGCSDirectory
- HaplotypeCallerIntegrationTest. testBamoutOnGcs