Class org.broadinstitute.hellbender.tools.PrintReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testGCSInputsAndOutputs[0](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, false, null) |
1.745s |
passed |
| testGCSInputsAndOutputs[1](org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.10000000-10000020.with.unmapped.bam, .bam, true, null) |
1.901s |
passed |
| testHttpPaths[0](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
4.241s |
passed |
| testHttpPaths[1](https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1761590244&Signature=f%2FZzwrQqSxCVgmp1sv%2BKwTxMriaNArwjTMpxGD6BBe1Y45ZD%2B71TEee8XhCbipwV2qVnMkqbsoJJBvaBrVQ0HXp1%2FhCsKcUZazWy83Zs1q%2BVFJaIou%2FAwBbVcmCCLsnzN3Xcu36o%2FJvLVU0RXVZYbcaqccIyo28cByTUxvuoBp2YMm%2B6S%2Fa1PDqF%2BVXWiQqu6rDDtcfkYP5Hbf8eGXUcUpcQboqXWIjJgqo%2Fuc11w4QeUM3B%2BUNdKVwMeaNLTHjKgSx5ljTtW7EdeeGGk2C2Qoaqs6dvbcOzruttHiYowcvZkDb0xQ0Ya5UbaIpCKSGec2yKz33538R10H1l2N9AJw%3D%3D, https://storage.googleapis.com/hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1761590244&Signature=acIoBhnGcEEf3FLhNgYGQumXuNEJHBVOk%2BicGXloEwXpqfA5hhmAAhRuThtpJp%2B4LcNyQ2OCnEJI3LCD3MyR8a7NNC%2FbpRii%2FjxCeIMwSfI1OVIpKNMisoIwsODhcv9Fkav%2FrF6Q0LIAKIOExMtD5pXrdw6vEP2wXEyyCrns0LNNxA19XoVDq74nU%2BEFCwpRiGcsmR5wjgwlZmnmQQ5JkeL2efLwrHYmpcv%2Fqi83sq4TfyKCBWSWeOwC3bYffc8cQMgl3Q6%2FchliFwi0qRDg%2BurjzCOZ3XqjE1nznQck6bgyuATrUOBlLrA1raf9pnB5tJFXw6m%2FrFn3uqtPkEQ8zw%3D%3D, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam, gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai, [3:1000000-1000001, 3:1000003-1000100, 20:1099000-1100000], 528) |
3.706s |
passed |
| testHttpPaths[2](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
2.404s |
passed |
| testHttpPaths[3](https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1761590244&Signature=q%2BX0faOtCyb5L%2BZEjKiN9kMi5QGpDnJJAxfC4ISv8uMD8Em3C5HgDXcf3c4Pp%2BLR35GL2vXiNd%2FJ7ayHsFTzD80qp8Oj88D0Y8PfAuCIvwCFG12AGZ2wh6Yf2daxqs%2F7ny0y%2FJSqFgjhvioDHW%2FC%2FniArJiJ5ED9psct%2F6iHp6iLZWWRV%2FsUUOCiIlguZnpiEpQLqUuZrSEWqTKIP8xW6mo512lI6GEr7BH2jg08sgPCxKmMuwUn71Te0QRmTWY5Plr3t%2Bk2CShxKCnQ3j%2F6EHpdWWMC%2FqMdp%2BSdH147vlgrRR1xuMEcZRrozN8I9X976WRX0U6HR8Qk6gJQp9u%2F7g%3D%3D, https://storage.googleapis.com/hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai?GoogleAccessId=806222273987-uilktks3j6i7962rp0v7nusveer58497@developer.gserviceaccount.com&Expires=1761590244&Signature=u2s%2B8hemLpFnnWFOKc%2B6iNJWhDjKkQi6bHJUckUgBs3sRujKUl2ePguiXI%2BFRCOefZvfh3wi0ON0duzOUQ7quCo2jHVhj7WRVrkW%2BROcKNps92x957ZfYZdxYQpu3VoK7mY%2B27V%2FcuOdvEvdYiQ7%2BqPI%2BhPE24QDara24UdPp3lRUlyXgpavOaKV%2FwsqxTMSjXv0A7Ihjmytb%2BO00FARW1iwCslpXTOCo1Ni%2BCt5JJl0phEO2vEF0z8LDSlPsTErqt1HTpkpzLMPYnyivgLzIgKlfgYERtSxYbLXP1fxxTDxprN0SB6atbiRrr6sJ4DKVBYNEKxPxaSmdknObhjMSw%3D%3D, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram, gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai, [20:9999902-10000000], 112) |
1.988s |
passed |
Standard error
[October 27, 2025 at 5:37:22 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:24 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:26 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:28 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:30 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:32 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:33 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:37:35 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=534773760
[October 27, 2025 at 5:37:36 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=534773760
[October 27, 2025 at 5:37:37 PM UTC] org.broadinstitute.hellbender.tools.PrintReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=534773760