17:42:15.350 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:16.608 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:16.899 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:16.925 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:17.024 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:17.082 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:17.255 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:17.339 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:18.157 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:19.205 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:20.292 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:21.352 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:22.415 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:23.481 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:24.542 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:25.582 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:26.523 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:26.748 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:26.774 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:26.895 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:26.952 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:27.030 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:27.103 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:27.758 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:27.988 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:28.014 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:28.118 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:28.177 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:28.253 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:28.335 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:29.045 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:29.286 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:29.312 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:29.412 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:29.466 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:29.537 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:30.230 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:30.453 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:30.482 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:30.585 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:30.627 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:30.703 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:31.428 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:31.660 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:31.686 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:31.783 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:31.848 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:31.927 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:32.624 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:32.839 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:32.865 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:32.975 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:33.025 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:33.100 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:33.803 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:34.038 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:34.064 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:34.174 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:34.225 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:34.317 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:35.002 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:35.240 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:35.266 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:35.371 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:35.421 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:35.499 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:36.313 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:37.162 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:37.392 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:37.417 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:37.529 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:37.588 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:37.665 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:38.451 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv
17:42:39.296 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:39.520 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:39.546 INFO FeatureManager - Using codec SimpleCountCodec to read file gs://hellbender/test/resources/org/broadinstitute/hellbender/tools/copynumber/formats/collections/simple-count-collection-integer-counts.counts.tsv.gz
17:42:39.657 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:39.739 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:42:39.815 WARN IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater