Class org.broadinstitute.hellbender.tools.funcotator.dataSources.DbSnpIntegrationTest

all > org.broadinstitute.hellbender.tools.funcotator.dataSources > DbSnpIntegrationTest

tests

failures

ignored

25.109s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testDbSnpDataSourceParsing[0](hg19, chr1:10318704-10318704, rs746945770, G*, A)	3.209s	passed
testDbSnpDataSourceParsing[1](hg19, chrX:31213723-31213723, rs5972332, C*, T)	3.109s	passed
testDbSnpDataSourceParsing[2](hg19, chrY:8551842-8551842, rs562075277, G*, A)	3.230s	passed
testDbSnpDataSourceParsing[3](hg19, chrM:5005-5005, rs879008075, T*, C)	2.929s	passed
testDbSnpDataSourceParsing[4](hg38, chr1:84349785-84349785, rs17131617, T*, C)	3.375s	passed
testDbSnpDataSourceParsing[5](hg38, chrX:80688070-80688070, rs3122407, T*, C)	3.163s	passed
testDbSnpDataSourceParsing[6](hg38, chrY:13355944-13355944, rs2032654, A*, G)	3.128s	passed
testDbSnpDataSourceParsing[7](hg38, chrM:5131-5133, rs199476116, TAA*, T)	2.966s	passed

Standard error

17:44:13.637 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:14.454 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz
17:44:14.624 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:14.670 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:15.047 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:16.989 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:17.912 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz
17:44:18.037 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:18.082 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:18.293 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:20.163 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:21.066 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz
17:44:21.200 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:21.247 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:21.490 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:23.307 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:24.255 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg19.20230908s/dbsnp/hg19/hg19_All_20180423.vcf.gz
17:44:24.380 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:24.431 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:24.669 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:26.346 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:27.351 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz
17:44:27.494 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:27.535 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:27.875 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:29.702 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:30.566 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz
17:44:30.714 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:30.766 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:31.053 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:32.684 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:33.626 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz
17:44:33.780 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:33.832 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:34.118 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:35.872 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:36.841 INFO  FeatureManager - Using codec VCFCodec to read file gs://gcp-public-data--broad-references/funcotator/funcotator_dataSources.v1.8.hg38.20230908s/dbsnp/hg38/hg38_All_20180418.vcf.gz
17:44:36.979 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:37.027 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater
17:44:37.301 WARN  IntelInflaterFactory - IntelInflater is not supported, using Java.util.zip.Inflater