Class org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyBQSRCloud[0](ApplyBQSR(args='')) |
5.227s |
passed |
| testApplyBQSRCloud[10](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
2.840s |
passed |
| testApplyBQSRCloud[11](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
2.850s |
passed |
| testApplyBQSRCloud[12](ApplyBQSR(args='--disable-sequence-dictionary-validationtrue')) |
2.831s |
passed |
| testApplyBQSRCloud[13](ApplyBQSR(args='--quantize-quals6--disable-sequence-dictionary-validationtrue')) |
2.882s |
passed |
| testApplyBQSRCloud[1](ApplyBQSR(args='-OQ')) |
3.251s |
passed |
| testApplyBQSRCloud[2](ApplyBQSR(args='--quantize-quals-1')) |
3.084s |
passed |
| testApplyBQSRCloud[3](ApplyBQSR(args='--quantize-quals6')) |
2.864s |
passed |
| testApplyBQSRCloud[4](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30')) |
2.937s |
passed |
| testApplyBQSRCloud[5](ApplyBQSR(args='--static-quantized-quals10--static-quantized-quals20--static-quantized-quals30--round-down-quantized')) |
2.468s |
passed |
| testApplyBQSRCloud[6](ApplyBQSR(args='')) |
2.982s |
passed |
| testApplyBQSRCloud[7](ApplyBQSR(args='-OQ')) |
2.848s |
passed |
| testApplyBQSRCloud[8](ApplyBQSR(args='--quantize-quals-1')) |
2.386s |
passed |
| testApplyBQSRCloud[9](ApplyBQSR(args='--quantize-quals6')) |
2.824s |
passed |
Standard error
[October 27, 2025 at 5:46:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:46:49 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:46:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:46:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:46:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:01 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:12 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:18 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:20 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:47:23 PM UTC] org.broadinstitute.hellbender.tools.walkers.bqsr.ApplyBQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000