Class org.broadinstitute.hellbender.utils.read.ReadUtilsIntegrationTest

all > org.broadinstitute.hellbender.utils.read > ReadUtilsIntegrationTest

tests

failures

ignored

22.079s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testCreatePathSAMWriter[0](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.sam, src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/print_reads.fasta, .cram, false, true, true, false)	3.619s	passed
testCreatePathSAMWriter[1](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, false, true, true, false)	3.815s	passed
testCreatePathSAMWriter[2](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, false, true, true, true)	1.755s	passed
testCreatePathSAMWriter[3](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, true, false)	3.493s	passed
testCreatePathSAMWriter[4](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, true, true)	1.759s	passed
testCreatePathSAMWriter[5](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/query_sorted.bam, null, .bam, true, true, false, false)	3.064s	passed
testCreatePathSAMWriter[6](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, true, false, true)	1.437s	passed
testCreatePathSAMWriter[7](src/test/resources/org/broadinstitute/hellbender/utils/read/ReadUtils/coordinate_sorted.bam, null, .bam, true, false, false, false)	3.137s	passed

Standard error

17:49:03.671 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/810bcae8-01de-4411-b148-8a577d6272f0.cram. Index file creation requires reads in coordinate sorted order.
17:49:07.273 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/ad645ed0-49c8-477e-a609-d6067332a0e0.bam. Index file creation requires reads in coordinate sorted order.
17:49:12.840 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/270ab840-3ea3-486e-bc3a-bb2a757faba2.bam. Index file creation requires reads in coordinate sorted order.
17:49:18.092 WARN  ReadUtils - Skipping index file creation for: staging/samWriterTest/874877bc-0996-4226-bf89-d0a59ca3a9d6.bam. Index file creation requires reads in coordinate sorted order.