Class org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomyIntegrationTest
Tests
| Test |
Duration |
Result |
| testBadCatalog |
0.072s |
passed |
| testBadTaxdump |
0.074s |
passed |
| test[0](catalog.txt.gz, null, 0, tax.db) |
0.085s |
passed |
| test[1](catalog.txt.gz, null, 50, tax_min50.db) |
0.074s |
passed |
| test[2](null, genbank.txt.gz, 0, tax_genbank.db) |
0.076s |
passed |
Standard error
[October 27, 2025 at 5:46:39 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomy done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=935329792
[October 27, 2025 at 5:46:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomy done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=935329792
[October 27, 2025 at 5:46:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomy done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=935329792
[October 27, 2025 at 5:46:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomy done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=935329792
[October 27, 2025 at 5:46:40 PM UTC] org.broadinstitute.hellbender.tools.spark.pathseq.PathSeqBuildReferenceTaxonomy done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=935329792