Package org.broadinstitute.hellbender.tools.spark.pathseq
all > org.broadinstitute.hellbender.tools.spark.pathseq
Failed tests
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PathSeqBwaSparkIntegrationTest.
testBwaTool[0](basic_input.bam, basic_output.paired.bam)
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PathSeqFilterSparkIntegrationTest.
testFilterTool[3](basic_input.bam, bwa_output.paired.bam, bwa_output.unpaired.bam, bwa_filter.metrics, false, true, false, false, true)
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PathSeqFilterSparkIntegrationTest.
testFilterTool[5](basic_input.bam, all_output.paired.bam, all_output.unpaired.bam, all_filter.metrics, false, false, true, true, true)
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PathSeqPipelineSparkIntegrationTest.
testPipelineTool[0](pipeline_input.bam, pipeline_output.bam, pipeline_output.txt, pipeline_output.filter.metrics, pipeline_output.score.metrics, false)
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PathSeqPipelineSparkIntegrationTest.
testPipelineTool[1](pipeline_input_aligned.bam, pipeline_output_aligned.bam, pipeline_output_aligned.txt, pipeline_output_aligned.filter.metrics, pipeline_output_aligned.score.metrics, true)