Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest
14

tests
0

failures
0

ignored
10.180s

duration
100%

successful

Tests

Test Duration Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags) 0.975s passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show()) 1.198s passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0) 0.052s passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null) 0.049s passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null) 2.710s passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2) 0.118s passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1) 0.983s passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100) 1.187s passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4) 0.125s passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0) 1.686s passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0) 0.140s passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2) 0.401s passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2) 0.195s passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3) 0.361s passed

Standard error

13:38:17.055 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1784643892.txt
13:38:18.030 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--211380844.txt
13:38:19.230 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-383511049.txt
13:38:19.282 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--601410230.txt
13:38:19.404 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1265005552.txt
13:38:20.385 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-748919630.txt
13:38:21.572 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--566953461.txt
13:38:21.698 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1079971056.txt
13:38:23.385 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1244502605.txt
13:38:23.526 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1320565101.txt
13:38:23.927 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--879987114.txt
13:38:24.122 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--111100845.txt
13:38:24.485 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1503072631.txt
13:38:24.533 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--2141075096.txt