Class org.broadinstitute.hellbender.utils.python.PythonEnvironmentIntegrationTest

all > org.broadinstitute.hellbender.utils.python > PythonEnvironmentIntegrationTest

tests

failures

ignored

10.086s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
testGATKPythonEnvironmentPackageMKLEnabled[0](pytensor, '-lmkl_rt' in pytensor.config.blas__ldflags)	0.985s	passed
testGATKPythonEnvironmentPackageMKLEnabled[1](torch, 'BLAS_INFO=mkl' in torch.__config__.show() and 'USE_MKL=ON' in torch.__config__.show())	1.212s	passed
testGATKPythonEnvironmentPackagePresent[0](mkl, 2.4.0)	0.052s	passed
testGATKPythonEnvironmentPackagePresent[10](argparse, null)	0.047s	passed
testGATKPythonEnvironmentPackagePresent[11](gcnvkernel, null)	2.696s	passed
testGATKPythonEnvironmentPackagePresent[1](numpy, 1.26.2)	0.120s	passed
testGATKPythonEnvironmentPackagePresent[2](pytensor, 2.18.1)	0.969s	passed
testGATKPythonEnvironmentPackagePresent[3](torch, 2.1.0.post100)	1.147s	passed
testGATKPythonEnvironmentPackagePresent[4](scipy, 1.11.4)	0.124s	passed
testGATKPythonEnvironmentPackagePresent[5](pymc, 5.10.0)	1.666s	passed
testGATKPythonEnvironmentPackagePresent[6](h5py, 3.10.0)	0.139s	passed
testGATKPythonEnvironmentPackagePresent[7](sklearn, 1.3.2)	0.386s	passed
testGATKPythonEnvironmentPackagePresent[8](matplotlib, 3.8.2)	0.190s	passed
testGATKPythonEnvironmentPackagePresent[9](pandas, 2.1.3)	0.353s	passed

Standard error

01:23:03.471 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1831440703.txt
01:23:04.457 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-584478351.txt
01:23:05.670 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1698570845.txt
01:23:05.723 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--952335630.txt
01:23:05.845 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--775485914.txt
01:23:06.813 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-606976603.txt
01:23:07.960 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1312935200.txt
01:23:08.085 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1951350366.txt
01:23:09.753 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1119258881.txt
01:23:09.894 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1931585779.txt
01:23:10.279 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1399941687.txt
01:23:10.470 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal-1685434093.txt
01:23:10.824 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--810942409.txt
01:23:10.871 INFO  StreamingProcessController - Enabling streaming process journaling file gatkStreamingProcessJournal--1252930093.txt