View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
31.99% (554/1732) |
47.30% (35/74) |
35.03% (476/1359) |
src/htslib/cram/cram_codecs.c |
33.38% (923/2765) |
31.29% (51/163) |
33.73% (713/2114) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/12) |
src/htslib/cram/cram_decode.c |
26.44% (698/2640) |
52.17% (12/23) |
26.20% (669/2553) |
src/htslib/cram/cram_encode.c |
74.85% (2205/2946) |
91.43% (32/35) |
72.99% (2113/2895) |
src/htslib/cram/cram_index.c |
0.00% (0/612) |
0.00% (0/23) |
0.00% (0/519) |
src/htslib/cram/cram_io.c |
56.00% (2248/4014) |
68.18% (75/110) |
56.20% (1695/3016) |
src/htslib/cram/cram_io.h |
32.17% (46/143) |
54.55% (6/11) |
35.00% (42/120) |
src/htslib/cram/cram_stats.c |
69.75% (83/119) |
80.00% (4/5) |
63.16% (84/133) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/294) |
src/htslib/cram/open_trace_file.c |
29.36% (69/235) |
71.43% (5/7) |
22.54% (48/213) |
src/htslib/cram/pooled_alloc.c |
85.71% (60/70) |
83.33% (5/6) |
77.14% (27/35) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
80.49% (33/41) |
src/htslib/faidx.c |
36.79% (277/753) |
20.51% (8/39) |
38.25% (231/604) |
src/htslib/header.c |
39.26% (749/1908) |
50.00% (30/60) |
36.65% (722/1970) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (1/1) |
100.00% (1/1) |
src/htslib/hfile.c |
55.74% (437/784) |
63.24% (43/68) |
51.60% (306/593) |
src/htslib/hfile_gcs.c |
54.12% (46/85) |
75.00% (3/4) |
51.28% (20/39) |
src/htslib/hfile_libcurl.c |
35.43% (378/1067) |
63.64% (21/33) |
30.32% (252/831) |
src/htslib/hfile_s3.c |
52.91% (527/996) |
70.27% (26/37) |
53.18% (376/707) |
src/htslib/hfile_s3_write.c |
8.33% (46/552) |
20.00% (5/25) |
5.98% (15/251) |
src/htslib/hts.c |
17.22% (636/3693) |
20.33% (25/123) |
15.99% (602/3764) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.42% (3/722) |
src/htslib/hts_internal.h |
47.62% (10/21) |
50.00% (1/2) |
45.10% (23/51) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/57) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
40.92% (302/738) |
46.15% (6/13) |
42.71% (284/665) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
39.66% (23/58) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
75.51% (37/49) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
31.71% (333/1050) |
45.45% (10/22) |
33.45% (292/873) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
79.77% (205/257) |
75.00% (3/4) |
80.92% (140/173) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
80.65% (25/31) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
2.50% (6/240) |
5.88% (1/17) |
7.46% (5/67) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
21.82% (120/550) |
50.00% (3/6) |
22.41% (91/406) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
76.97% (361/469) |
100.00% (14/14) |
90.91% (280/308) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/484) |
0.00% (0/4) |
0.00% (0/410) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
96.64% (921/953) |
100.00% (7/7) |
94.44% (391/414) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/685) |
0.00% (0/7) |
0.00% (0/335) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/949) |
0.00% (0/4) |
0.00% (0/322) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
81.43% (943/1158) |
92.86% (13/14) |
86.13% (764/887) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.25% (85/272) |
50.00% (8/16) |
73.68% (28/38) |
src/htslib/htscodecs/htscodecs/rle.c |
87.18% (102/117) |
60.00% (3/5) |
85.71% (60/70) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
76.85% (820/1067) |
80.00% (28/35) |
72.75% (670/921) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
73.85% (48/65) |
src/htslib/htscodecs/htscodecs/utils.h |
67.32% (173/257) |
66.67% (4/6) |
90.16% (110/122) |
src/htslib/htscodecs/htscodecs/varint.h |
22.58% (56/248) |
25.00% (3/12) |
30.30% (40/132) |
src/htslib/htslib/bgzf.h |
85.19% (23/27) |
100.00% (2/2) |
100.00% (11/11) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
64.29% (45/70) |
77.78% (7/9) |
74.47% (35/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/15) |
src/htslib/htslib/khash.h |
62.75% (128/204) |
53.85% (7/13) |
67.15% (139/207) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/34) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/122) |
src/htslib/htslib/kstring.h |
67.53% (183/271) |
76.19% (16/21) |
79.05% (83/105) |
src/htslib/htslib/sam.h |
75.24% (155/206) |
27.27% (3/11) |
82.76% (120/145) |
src/htslib/htslib/vcf.h |
64.38% (94/146) |
55.56% (10/18) |
81.31% (87/107) |
src/htslib/kstring.c |
63.23% (184/291) |
54.55% (6/11) |
52.51% (157/299) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
93.04% (147/158) |
src/htslib/multipart.c |
0.00% (0/148) |
0.00% (0/9) |
0.00% (0/148) |
src/htslib/region.c |
0.00% (0/157) |
0.00% (0/6) |
0.00% (0/158) |
src/htslib/sam.c |
35.51% (1688/4753) |
38.27% (62/162) |
35.84% (1749/4880) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
95.24% (20/21) |
src/htslib/sam_mods.c |
0.00% (0/339) |
0.00% (0/11) |
0.00% (0/358) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
3.21% (16/499) |
10.53% (2/19) |
1.41% (7/498) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
76.14% (67/88) |
src/htslib/textutils.c |
16.43% (58/353) |
13.64% (3/22) |
21.09% (66/313) |
src/htslib/textutils_internal.h |
76.19% (128/168) |
73.33% (11/15) |
96.18% (126/131) |
src/htslib/thread_pool.c |
0.00% (0/629) |
0.00% (0/33) |
0.00% (0/396) |
src/htslib/vcf.c |
47.99% (2406/5014) |
50.00% (72/144) |
45.90% (2658/5791) |
Totals |
40.23% (20200/50206) |
44.09% (750/1701) |
39.81% (17251/43334) |