View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
31.81% (558/1754) |
42.11% (32/76) |
34.29% (562/1639) |
src/htslib/bgzf_internal.h |
70.59% (12/17) |
66.67% (2/3) |
43.18% (19/44) |
src/htslib/cram/cram_codecs.c |
46.58% (748/1606) |
48.24% (41/85) |
44.01% (643/1461) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/13) |
src/htslib/cram/cram_decode.c |
22.17% (604/2725) |
44.00% (11/25) |
22.92% (639/2788) |
src/htslib/cram/cram_encode.c |
74.13% (2138/2884) |
91.43% (32/35) |
70.95% (2144/3022) |
src/htslib/cram/cram_index.c |
0.00% (0/612) |
0.00% (0/23) |
0.00% (0/568) |
src/htslib/cram/cram_io.c |
56.14% (2154/3837) |
72.34% (68/94) |
54.96% (1850/3366) |
src/htslib/cram/cram_io.h |
30.77% (44/143) |
54.55% (6/11) |
34.71% (42/121) |
src/htslib/cram/cram_stats.c |
72.73% (80/110) |
80.00% (4/5) |
60.93% (92/151) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/350) |
src/htslib/cram/open_trace_file.c |
29.61% (69/233) |
71.43% (5/7) |
21.76% (52/239) |
src/htslib/cram/pooled_alloc.c |
91.43% (64/70) |
100.00% (6/6) |
76.09% (35/46) |
src/htslib/cram/string_alloc.c |
96.97% (64/66) |
100.00% (6/6) |
73.21% (41/56) |
src/htslib/faidx.c |
3.78% (29/767) |
10.26% (4/39) |
2.61% (19/728) |
src/htslib/header.c |
42.89% (917/2138) |
55.22% (37/67) |
38.76% (1043/2691) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (2/2) |
80.00% (24/30) |
src/htslib/hfile.c |
48.59% (380/782) |
50.00% (35/70) |
40.81% (311/762) |
src/htslib/hfile_gcs.c |
13.25% (11/83) |
25.00% (1/4) |
1.92% (1/52) |
src/htslib/hfile_libcurl.c |
4.46% (54/1211) |
10.81% (4/37) |
3.63% (44/1212) |
src/htslib/hfile_s3.c |
2.40% (39/1626) |
6.15% (4/65) |
1.65% (22/1337) |
src/htslib/hts.c |
18.17% (676/3721) |
20.63% (26/126) |
16.45% (701/4261) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.40% (3/755) |
src/htslib/hts_internal.h |
64.86% (24/37) |
66.67% (2/3) |
60.49% (49/81) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/66) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
41.85% (308/736) |
46.15% (6/13) |
43.46% (339/780) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
38.98% (23/59) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
74.51% (38/51) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
32.35% (339/1048) |
45.45% (10/22) |
34.97% (321/918) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
83.66% (215/257) |
75.00% (3/4) |
80.77% (147/182) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
76.19% (32/42) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
31.25% (75/240) |
35.29% (6/17) |
18.64% (33/177) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
50.09% (275/549) |
50.00% (3/6) |
53.54% (242/452) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
77.14% (361/468) |
100.00% (14/14) |
91.93% (296/322) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/478) |
0.00% (0/4) |
0.00% (0/448) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
96.62% (914/946) |
100.00% (7/7) |
93.41% (510/546) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/678) |
0.00% (0/7) |
0.00% (0/415) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/947) |
0.00% (0/4) |
0.00% (0/382) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
81.79% (961/1175) |
86.67% (13/15) |
84.62% (847/1001) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.02% (85/274) |
50.00% (8/16) |
60.56% (43/71) |
src/htslib/htscodecs/htscodecs/rle.c |
89.66% (104/116) |
60.00% (3/5) |
86.49% (64/74) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
87.31% (929/1064) |
91.43% (32/35) |
85.60% (868/1014) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
64.86% (48/74) |
src/htslib/htscodecs/htscodecs/utils.h |
67.32% (173/257) |
66.67% (4/6) |
90.32% (112/124) |
src/htslib/htscodecs/htscodecs/varint.h |
19.35% (48/248) |
16.67% (2/12) |
56.92% (37/65) |
src/htslib/htslib/bgzf.h |
81.25% (26/32) |
100.00% (2/2) |
100.00% (14/14) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
68.57% (48/70) |
88.89% (8/9) |
76.60% (36/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_alloc.h |
61.54% (48/78) |
78.57% (11/14) |
61.33% (46/75) |
src/htslib/htslib/hts_defs.h |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/1) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/18) |
src/htslib/htslib/khash.h |
56.89% (128/225) |
50.00% (7/14) |
76.50% (140/183) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/41) |
src/htslib/htslib/ksort.h |
0.00% (0/184) |
0.00% (0/9) |
0.00% (0/125) |
src/htslib/htslib/kstring.h |
64.94% (176/271) |
71.43% (15/21) |
66.67% (86/129) |
src/htslib/htslib/sam.h |
77.67% (160/206) |
36.36% (4/11) |
86.84% (132/152) |
src/htslib/htslib/vcf.h |
63.09% (94/149) |
55.56% (10/18) |
80.73% (88/109) |
src/htslib/kstring.c |
59.36% (222/374) |
50.00% (8/16) |
51.46% (211/410) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
92.45% (147/159) |
src/htslib/multipart.c |
0.00% (0/146) |
0.00% (0/9) |
0.00% (0/173) |
src/htslib/region.c |
0.00% (0/156) |
0.00% (0/6) |
0.00% (0/175) |
src/htslib/sam.c |
32.77% (1521/4642) |
35.62% (57/160) |
30.99% (1641/5296) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
88.00% (22/25) |
src/htslib/sam_mods.c |
0.00% (0/345) |
0.00% (0/11) |
0.00% (0/366) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
2.99% (16/536) |
8.70% (2/23) |
1.39% (8/575) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
79.21% (80/101) |
src/htslib/textutils.c |
10.80% (38/352) |
4.55% (1/22) |
12.77% (42/329) |
src/htslib/textutils_internal.h |
75.00% (126/168) |
60.00% (9/15) |
80.81% (139/172) |
src/htslib/thread_pool.c |
0.00% (0/627) |
0.00% (0/33) |
0.00% (0/535) |
src/htslib/vcf.c |
48.85% (2537/5193) |
49.67% (75/151) |
46.92% (3059/6519) |
Totals |
38.63% (19203/49715) |
42.02% (700/1666) |
37.41% (18267/48827) |