View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
33.71% (594/1762) |
44.87% (35/78) |
33.68% (591/1755) |
src/htslib/bgzf_internal.h |
70.59% (12/17) |
66.67% (2/3) |
43.18% (19/44) |
src/htslib/cram/cram_codecs.c |
47.81% (765/1600) |
48.24% (41/85) |
44.94% (653/1453) |
src/htslib/cram/cram_codecs.h |
0.00% (0/8) |
0.00% (0/1) |
0.00% (0/11) |
src/htslib/cram/cram_decode.c |
24.95% (684/2741) |
48.00% (12/25) |
25.74% (724/2813) |
src/htslib/cram/cram_encode.c |
78.30% (2284/2917) |
91.67% (33/36) |
72.80% (2307/3169) |
src/htslib/cram/cram_index.c |
0.00% (0/618) |
0.00% (0/23) |
0.00% (0/565) |
src/htslib/cram/cram_io.c |
56.57% (2175/3845) |
74.47% (70/94) |
52.74% (1904/3610) |
src/htslib/cram/cram_io.h |
31.47% (45/143) |
54.55% (6/11) |
35.54% (43/121) |
src/htslib/cram/cram_stats.c |
84.55% (93/110) |
100.00% (5/5) |
77.48% (117/151) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/350) |
src/htslib/cram/open_trace_file.c |
29.61% (69/233) |
71.43% (5/7) |
21.76% (52/239) |
src/htslib/cram/pooled_alloc.c |
91.43% (64/70) |
100.00% (6/6) |
76.09% (35/46) |
src/htslib/cram/string_alloc.c |
96.97% (64/66) |
100.00% (6/6) |
73.21% (41/56) |
src/htslib/faidx.c |
36.67% (286/780) |
20.00% (8/40) |
41.06% (349/850) |
src/htslib/header.c |
42.33% (921/2176) |
54.41% (37/68) |
38.34% (1049/2736) |
src/htslib/header.h |
100.00% (5/5) |
66.67% (2/3) |
69.01% (147/213) |
src/htslib/hfile.c |
64.71% (506/782) |
69.01% (49/71) |
60.94% (529/868) |
src/htslib/hfile_gcs.c |
54.35% (50/92) |
75.00% (3/4) |
50.91% (28/55) |
src/htslib/hfile_libcurl.c |
21.97% (266/1211) |
39.47% (15/38) |
17.15% (226/1318) |
src/htslib/hfile_s3.c |
38.23% (666/1742) |
61.19% (41/67) |
36.50% (523/1433) |
src/htslib/hts.c |
17.85% (679/3803) |
20.16% (26/129) |
17.08% (775/4538) |
src/htslib/hts_expr.c |
0.42% (3/712) |
4.35% (1/23) |
0.37% (3/811) |
src/htslib/hts_internal.h |
64.86% (24/37) |
66.67% (2/3) |
60.49% (49/81) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/66) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
41.85% (308/736) |
46.15% (6/13) |
43.46% (339/780) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
38.98% (23/59) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
74.51% (38/51) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
32.35% (339/1048) |
45.45% (10/22) |
34.97% (321/918) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
83.66% (215/257) |
75.00% (3/4) |
80.77% (147/182) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
76.19% (32/42) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
31.25% (75/240) |
35.29% (6/17) |
18.64% (33/177) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
50.09% (275/549) |
50.00% (3/6) |
53.54% (242/452) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
77.14% (361/468) |
100.00% (14/14) |
91.93% (296/322) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/478) |
0.00% (0/4) |
0.00% (0/448) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
96.62% (914/946) |
100.00% (7/7) |
93.41% (510/546) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/678) |
0.00% (0/7) |
0.00% (0/415) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/947) |
0.00% (0/4) |
0.00% (0/382) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
81.79% (961/1175) |
86.67% (13/15) |
84.62% (847/1001) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.02% (85/274) |
50.00% (8/16) |
60.56% (43/71) |
src/htslib/htscodecs/htscodecs/rle.c |
89.66% (104/116) |
60.00% (3/5) |
86.49% (64/74) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
87.50% (931/1064) |
91.43% (32/35) |
85.90% (871/1014) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
64.86% (48/74) |
src/htslib/htscodecs/htscodecs/utils.h |
67.32% (173/257) |
66.67% (4/6) |
90.32% (112/124) |
src/htslib/htscodecs/htscodecs/varint.h |
19.35% (48/248) |
16.67% (2/12) |
56.92% (37/65) |
src/htslib/htslib/bgzf.h |
81.25% (26/32) |
100.00% (2/2) |
100.00% (14/14) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
68.57% (48/70) |
88.89% (8/9) |
78.72% (37/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_alloc.h |
70.51% (55/78) |
78.57% (11/14) |
76.00% (57/75) |
src/htslib/htslib/hts_defs.h |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/1) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/18) |
src/htslib/htslib/khash.h |
28.80% (72/250) |
42.86% (6/14) |
74.31% (81/109) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/9) |
0.00% (0/147) |
src/htslib/htslib/ksort.h |
0.00% (0/188) |
0.00% (0/9) |
0.00% (0/128) |
src/htslib/htslib/kstring.h |
66.42% (180/271) |
76.19% (16/21) |
67.44% (87/129) |
src/htslib/htslib/sam.h |
77.67% (160/206) |
36.36% (4/11) |
86.84% (132/152) |
src/htslib/htslib/vcf.h |
63.09% (94/149) |
55.56% (10/18) |
80.73% (88/109) |
src/htslib/kstring.c |
59.36% (222/374) |
50.00% (8/16) |
51.46% (211/410) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
92.45% (147/159) |
src/htslib/multipart.c |
0.00% (0/146) |
0.00% (0/9) |
0.00% (0/173) |
src/htslib/region.c |
0.00% (0/156) |
0.00% (0/7) |
0.00% (0/281) |
src/htslib/sam.c |
32.81% (1541/4697) |
35.19% (57/162) |
30.69% (1666/5428) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
88.00% (22/25) |
src/htslib/sam_mods.c |
0.00% (0/345) |
0.00% (0/11) |
0.00% (0/368) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
2.96% (16/541) |
8.33% (2/24) |
1.39% (8/576) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
79.21% (80/101) |
src/htslib/textutils.c |
16.48% (58/352) |
13.64% (3/22) |
20.67% (68/329) |
src/htslib/textutils_internal.h |
46.43% (78/168) |
73.33% (11/15) |
54.07% (93/172) |
src/htslib/thread_pool.c |
0.00% (0/627) |
0.00% (0/33) |
0.00% (0/535) |
src/htslib/vcf.c |
46.94% (2466/5253) |
48.08% (75/156) |
44.87% (3032/6758) |
Totals |
41.11% (20663/50259) |
46.15% (780/1690) |
39.39% (20030/50855) |