View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
31.42% (541/1722) |
46.58% (34/73) |
34.25% (463/1352) |
src/htslib/cram/cram_codecs.c |
35.95% (993/2762) |
31.29% (51/163) |
36.77% (774/2105) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/12) |
src/htslib/cram/cram_decode.c |
26.17% (690/2637) |
56.52% (13/23) |
26.36% (668/2534) |
src/htslib/cram/cram_encode.c |
70.26% (2062/2935) |
82.86% (29/35) |
67.55% (1940/2872) |
src/htslib/cram/cram_index.c |
0.00% (0/496) |
0.00% (0/15) |
0.00% (0/410) |
src/htslib/cram/cram_io.c |
55.53% (2235/4025) |
70.00% (77/110) |
55.85% (1699/3042) |
src/htslib/cram/cram_io.h |
34.31% (47/137) |
54.55% (6/11) |
37.07% (43/116) |
src/htslib/cram/cram_stats.c |
69.75% (83/119) |
80.00% (4/5) |
63.91% (85/133) |
src/htslib/cram/mFILE.c |
1.08% (4/369) |
3.70% (1/27) |
1.02% (3/294) |
src/htslib/cram/open_trace_file.c |
58.95% (135/229) |
85.71% (6/7) |
55.67% (113/203) |
src/htslib/cram/pooled_alloc.c |
85.71% (60/70) |
83.33% (5/6) |
77.14% (27/35) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
80.49% (33/41) |
src/htslib/faidx.c |
13.97% (101/723) |
13.51% (5/37) |
10.68% (61/571) |
src/htslib/header.c |
39.28% (746/1899) |
50.00% (30/60) |
36.54% (717/1962) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (1/1) |
100.00% (1/1) |
src/htslib/hfile.c |
50.91% (391/768) |
56.72% (38/67) |
46.82% (272/581) |
src/htslib/hfile_gcs.c |
12.94% (11/85) |
25.00% (1/4) |
2.56% (1/39) |
src/htslib/hfile_libcurl.c |
21.11% (225/1066) |
39.39% (13/33) |
14.92% (124/831) |
src/htslib/hfile_s3.c |
1.03% (10/972) |
2.70% (1/37) |
0.14% (1/691) |
src/htslib/hfile_s3_write.c |
7.25% (40/552) |
16.00% (4/25) |
4.78% (12/251) |
src/htslib/hts.c |
16.20% (586/3618) |
20.00% (23/115) |
15.90% (585/3680) |
src/htslib/hts_expr.c |
0.47% (3/633) |
4.55% (1/22) |
0.42% (3/722) |
src/htslib/hts_internal.h |
58.82% (10/17) |
100.00% (1/1) |
45.83% (22/48) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/57) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
42.51% (295/694) |
38.46% (5/13) |
43.49% (274/630) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
39.66% (23/58) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
75.51% (37/49) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
31.71% (333/1050) |
45.45% (10/22) |
33.45% (292/873) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
54.47% (140/257) |
50.00% (2/4) |
53.18% (92/173) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
0.00% (0/55) |
0.00% (0/4) |
0.00% (0/31) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
79.17% (190/240) |
64.71% (11/17) |
91.04% (61/67) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
95.82% (527/550) |
100.00% (6/6) |
94.33% (383/406) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
45.42% (213/469) |
57.14% (8/14) |
57.14% (176/308) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
4.75% (23/484) |
25.00% (1/4) |
4.63% (19/410) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
58.45% (557/953) |
57.14% (4/7) |
63.04% (261/414) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/685) |
0.00% (0/7) |
0.00% (0/335) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/949) |
0.00% (0/4) |
0.00% (0/322) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
52.27% (565/1081) |
42.86% (6/14) |
52.40% (436/832) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
15.07% (41/272) |
25.00% (4/16) |
28.95% (11/38) |
src/htslib/htscodecs/htscodecs/rle.c |
31.62% (37/117) |
20.00% (1/5) |
32.86% (23/70) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
31.96% (333/1042) |
42.86% (15/35) |
32.45% (295/909) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
73.85% (48/65) |
src/htslib/htscodecs/htscodecs/utils.h |
65.76% (169/257) |
50.00% (3/6) |
89.34% (109/122) |
src/htslib/htscodecs/htscodecs/varint.h |
24.60% (61/248) |
33.33% (4/12) |
31.82% (42/132) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
64.29% (45/70) |
77.78% (7/9) |
74.47% (35/47) |
src/htslib/htslib/hts.h |
44.19% (19/43) |
40.00% (4/10) |
47.62% (10/21) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/15) |
src/htslib/htslib/khash.h |
79.25% (126/159) |
70.00% (7/10) |
81.03% (141/174) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/34) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/122) |
src/htslib/htslib/kstring.h |
69.04% (136/197) |
73.68% (14/19) |
80.23% (69/86) |
src/htslib/htslib/sam.h |
75.24% (155/206) |
27.27% (3/11) |
84.83% (123/145) |
src/htslib/htslib/vcf.h |
70.24% (118/168) |
61.11% (11/18) |
84.66% (138/163) |
src/htslib/kstring.c |
51.20% (149/291) |
45.45% (5/11) |
41.81% (125/299) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
93.04% (147/158) |
src/htslib/multipart.c |
0.00% (0/148) |
0.00% (0/9) |
0.00% (0/148) |
src/htslib/region.c |
0.00% (0/157) |
0.00% (0/6) |
0.00% (0/158) |
src/htslib/sam.c |
34.88% (1636/4690) |
38.27% (62/162) |
35.54% (1716/4829) |
src/htslib/sam_internal.h |
81.40% (35/43) |
100.00% (3/3) |
95.00% (19/20) |
src/htslib/sam_mods.c |
0.00% (0/339) |
0.00% (0/11) |
0.00% (0/358) |
src/htslib/tbx.c |
4.35% (16/368) |
10.53% (2/19) |
1.84% (7/380) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
76.14% (67/88) |
src/htslib/textutils.c |
16.43% (58/353) |
13.64% (3/22) |
20.45% (64/313) |
src/htslib/textutils_internal.h |
75.00% (126/168) |
60.00% (9/15) |
94.66% (124/131) |
src/htslib/thread_pool.c |
0.00% (0/618) |
0.00% (0/32) |
0.00% (0/386) |
src/htslib/vcf.c |
46.49% (2163/4653) |
46.81% (66/141) |
44.92% (2394/5330) |
Totals |
36.26% (17773/49021) |
39.82% (663/1665) |
36.51% (15432/42266) |