Coverage Report

View results by: Directories | Files

Path Line Coverage Function Coverage Region Coverage
src/htslib/bgzf.c
 31.42% (541/1722)
 46.58% (34/73)
 34.25% (463/1352)
src/htslib/cram/cram_codecs.c
 35.95% (993/2762)
 31.29% (51/163)
 36.77% (774/2105)
src/htslib/cram/cram_codecs.h
  0.00% (0/9)
  0.00% (0/1)
  0.00% (0/12)
src/htslib/cram/cram_decode.c
 26.17% (690/2637)
 56.52% (13/23)
 26.36% (668/2534)
src/htslib/cram/cram_encode.c
 70.26% (2062/2935)
 82.86% (29/35)
 67.55% (1940/2872)
src/htslib/cram/cram_index.c
  0.00% (0/496)
  0.00% (0/15)
  0.00% (0/410)
src/htslib/cram/cram_io.c
 55.53% (2235/4025)
 70.00% (77/110)
 55.85% (1699/3042)
src/htslib/cram/cram_io.h
 34.31% (47/137)
 54.55% (6/11)
 37.07% (43/116)
src/htslib/cram/cram_stats.c
 69.75% (83/119)
 80.00% (4/5)
 63.91% (85/133)
src/htslib/cram/mFILE.c
  1.08% (4/369)
  3.70% (1/27)
  1.02% (3/294)
src/htslib/cram/open_trace_file.c
 58.95% (135/229)
 85.71% (6/7)
 55.67% (113/203)
src/htslib/cram/pooled_alloc.c
 85.71% (60/70)
 83.33% (5/6)
 77.14% (27/35)
src/htslib/cram/string_alloc.c
 96.88% (62/64)
100.00% (6/6)
 80.49% (33/41)
src/htslib/faidx.c
 13.97% (101/723)
 13.51% (5/37)
 10.68% (61/571)
src/htslib/header.c
 39.28% (746/1899)
 50.00% (30/60)
 36.54% (717/1962)
src/htslib/header.h
100.00% (5/5)
100.00% (1/1)
100.00% (1/1)
src/htslib/hfile.c
 50.91% (391/768)
 56.72% (38/67)
 46.82% (272/581)
src/htslib/hfile_gcs.c
 12.94% (11/85)
 25.00% (1/4)
  2.56% (1/39)
src/htslib/hfile_libcurl.c
 21.11% (225/1066)
 39.39% (13/33)
 14.92% (124/831)
src/htslib/hfile_s3.c
  1.03% (10/972)
  2.70% (1/37)
  0.14% (1/691)
src/htslib/hfile_s3_write.c
  7.25% (40/552)
 16.00% (4/25)
  4.78% (12/251)
src/htslib/hts.c
 16.20% (586/3618)
 20.00% (23/115)
 15.90% (585/3680)
src/htslib/hts_expr.c
  0.47% (3/633)
  4.55% (1/22)
  0.42% (3/722)
src/htslib/hts_internal.h
 58.82% (10/17)
100.00% (1/1)
 45.83% (22/48)
src/htslib/hts_time_funcs.h
  0.00% (0/89)
  0.00% (0/5)
  0.00% (0/57)
src/htslib/htscodecs/htscodecs/arith_dynamic.c
 42.51% (295/694)
 38.46% (5/13)
 43.49% (274/630)
src/htslib/htscodecs/htscodecs/c_range_coder.h
 35.29% (36/102)
 31.25% (5/16)
 39.66% (23/58)
src/htslib/htscodecs/htscodecs/c_simple_model.h
 75.38% (49/65)
 75.00% (3/4)
 75.51% (37/49)
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c
 31.71% (333/1050)
 45.45% (10/22)
 33.45% (292/873)
src/htslib/htscodecs/htscodecs/htscodecs.c
  0.00% (0/3)
  0.00% (0/1)
  0.00% (0/2)
src/htslib/htscodecs/htscodecs/pack.c
 54.47% (140/257)
 50.00% (2/4)
 53.18% (92/173)
src/htslib/htscodecs/htscodecs/pooled_alloc.h
  0.00% (0/55)
  0.00% (0/4)
  0.00% (0/31)
src/htslib/htscodecs/htscodecs/rANS_byte.h
 79.17% (190/240)
 64.71% (11/17)
 91.04% (61/67)
src/htslib/htscodecs/htscodecs/rANS_static.c
 95.82% (527/550)
100.00% (6/6)
 94.33% (383/406)
src/htslib/htscodecs/htscodecs/rANS_static16_int.h
 45.42% (213/469)
 57.14% (8/14)
 57.14% (176/308)
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c
  4.75% (23/484)
 25.00% (1/4)
  4.63% (19/410)
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c
 58.45% (557/953)
 57.14% (4/7)
 63.04% (261/414)
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c
  0.00% (0/685)
  0.00% (0/7)
  0.00% (0/335)
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c
  0.00% (0/949)
  0.00% (0/4)
  0.00% (0/322)
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c
 52.27% (565/1081)
 42.86% (6/14)
 52.40% (436/832)
src/htslib/htscodecs/htscodecs/rANS_word.h
 15.07% (41/272)
 25.00% (4/16)
 28.95% (11/38)
src/htslib/htscodecs/htscodecs/rle.c
 31.62% (37/117)
 20.00% (1/5)
 32.86% (23/70)
src/htslib/htscodecs/htscodecs/tokenise_name3.c
 31.96% (333/1042)
 42.86% (15/35)
 32.45% (295/909)
src/htslib/htscodecs/htscodecs/utils.c
 62.03% (49/79)
 80.00% (4/5)
 73.85% (48/65)
src/htslib/htscodecs/htscodecs/utils.h
 65.76% (169/257)
 50.00% (3/6)
 89.34% (109/122)
src/htslib/htscodecs/htscodecs/varint.h
 24.60% (61/248)
 33.33% (4/12)
 31.82% (42/132)
src/htslib/htslib/cram.h
  0.00% (0/2)
  0.00% (0/2)
  0.00% (0/2)
src/htslib/htslib/hfile.h
 64.29% (45/70)
 77.78% (7/9)
 74.47% (35/47)
src/htslib/htslib/hts.h
 44.19% (19/43)
 40.00% (4/10)
 47.62% (10/21)
src/htslib/htslib/hts_endian.h
 57.48% (73/127)
 83.33% (15/18)
 80.00% (24/30)
src/htslib/htslib/hts_expr.h
  0.00% (0/16)
  0.00% (0/4)
  0.00% (0/15)
src/htslib/htslib/khash.h
 79.25% (126/159)
 70.00% (7/10)
 81.03% (141/174)
src/htslib/htslib/khash_str2int.h
  0.00% (0/56)
  0.00% (0/8)
  0.00% (0/34)
src/htslib/htslib/ksort.h
  0.00% (0/183)
  0.00% (0/9)
  0.00% (0/122)
src/htslib/htslib/kstring.h
 69.04% (136/197)
 73.68% (14/19)
 80.23% (69/86)
src/htslib/htslib/sam.h
 75.24% (155/206)
 27.27% (3/11)
 84.83% (123/145)
src/htslib/htslib/vcf.h
 70.24% (118/168)
 61.11% (11/18)
 84.66% (138/163)
src/htslib/kstring.c
 51.20% (149/291)
 45.45% (5/11)
 41.81% (125/299)
src/htslib/md5.c
 88.52% (162/183)
 85.71% (6/7)
 93.04% (147/158)
src/htslib/multipart.c
  0.00% (0/148)
  0.00% (0/9)
  0.00% (0/148)
src/htslib/region.c
  0.00% (0/157)
  0.00% (0/6)
  0.00% (0/158)
src/htslib/sam.c
 34.88% (1636/4690)
 38.27% (62/162)
 35.54% (1716/4829)
src/htslib/sam_internal.h
 81.40% (35/43)
100.00% (3/3)
 95.00% (19/20)
src/htslib/sam_mods.c
  0.00% (0/339)
  0.00% (0/11)
  0.00% (0/358)
src/htslib/tbx.c
  4.35% (16/368)
 10.53% (2/19)
  1.84% (7/380)
src/htslib/test/fuzz/hts_open_fuzzer.c
 75.38% (98/130)
100.00% (4/4)
 76.14% (67/88)
src/htslib/textutils.c
 16.43% (58/353)
 13.64% (3/22)
 20.45% (64/313)
src/htslib/textutils_internal.h
 75.00% (126/168)
 60.00% (9/15)
 94.66% (124/131)
src/htslib/thread_pool.c
  0.00% (0/618)
  0.00% (0/32)
  0.00% (0/386)
src/htslib/vcf.c
 46.49% (2163/4653)
 46.81% (66/141)
 44.92% (2394/5330)
Totals
 36.26% (17773/49021)
 39.82% (663/1665)
 36.51% (15432/42266)