View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
33.55% (581/1732) |
47.30% (35/74) |
36.72% (499/1359) |
src/htslib/cram/cram_codecs.c |
36.85% (1019/2765) |
31.29% (51/163) |
37.32% (789/2114) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/12) |
src/htslib/cram/cram_decode.c |
27.16% (717/2640) |
52.17% (12/23) |
26.91% (687/2553) |
src/htslib/cram/cram_encode.c |
77.05% (2270/2946) |
91.43% (32/35) |
75.34% (2181/2895) |
src/htslib/cram/cram_index.c |
0.00% (0/612) |
0.00% (0/23) |
0.00% (0/519) |
src/htslib/cram/cram_io.c |
58.82% (2361/4014) |
70.91% (78/110) |
58.45% (1763/3016) |
src/htslib/cram/cram_io.h |
32.87% (47/143) |
54.55% (6/11) |
36.67% (44/120) |
src/htslib/cram/cram_stats.c |
80.67% (96/119) |
100.00% (5/5) |
76.69% (102/133) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/294) |
src/htslib/cram/open_trace_file.c |
29.79% (70/235) |
71.43% (5/7) |
23.00% (49/213) |
src/htslib/cram/pooled_alloc.c |
85.71% (60/70) |
83.33% (5/6) |
77.14% (27/35) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
80.49% (33/41) |
src/htslib/faidx.c |
37.18% (280/753) |
20.51% (8/39) |
38.58% (233/604) |
src/htslib/header.c |
40.04% (764/1908) |
50.00% (30/60) |
37.06% (730/1970) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (1/1) |
100.00% (1/1) |
src/htslib/hfile.c |
59.44% (466/784) |
67.65% (46/68) |
55.14% (327/593) |
src/htslib/hfile_gcs.c |
54.12% (46/85) |
75.00% (3/4) |
51.28% (20/39) |
src/htslib/hfile_libcurl.c |
35.24% (376/1067) |
63.64% (21/33) |
30.08% (250/831) |
src/htslib/hfile_s3.c |
52.61% (524/996) |
70.27% (26/37) |
53.04% (375/707) |
src/htslib/hfile_s3_write.c |
7.25% (40/552) |
16.00% (4/25) |
4.78% (12/251) |
src/htslib/hts.c |
18.44% (681/3693) |
20.33% (25/123) |
17.11% (644/3764) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.42% (3/722) |
src/htslib/hts_internal.h |
47.62% (10/21) |
50.00% (1/2) |
45.10% (23/51) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/57) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
41.87% (309/738) |
46.15% (6/13) |
43.91% (292/665) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
39.66% (23/58) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
75.51% (37/49) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
32.48% (341/1050) |
45.45% (10/22) |
34.36% (300/873) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
83.66% (215/257) |
75.00% (3/4) |
82.66% (143/173) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
80.65% (25/31) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
31.25% (75/240) |
35.29% (6/17) |
34.33% (23/67) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
50.36% (277/550) |
50.00% (3/6) |
56.40% (229/406) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
77.19% (362/469) |
100.00% (14/14) |
91.56% (282/308) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/484) |
0.00% (0/4) |
0.00% (0/410) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
96.64% (921/953) |
100.00% (7/7) |
94.44% (391/414) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/685) |
0.00% (0/7) |
0.00% (0/335) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/949) |
0.00% (0/4) |
0.00% (0/322) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
82.21% (952/1158) |
92.86% (13/14) |
87.37% (775/887) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.25% (85/272) |
50.00% (8/16) |
73.68% (28/38) |
src/htslib/htscodecs/htscodecs/rle.c |
89.74% (105/117) |
60.00% (3/5) |
88.57% (62/70) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
85.85% (916/1067) |
91.43% (32/35) |
84.47% (778/921) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
73.85% (48/65) |
src/htslib/htscodecs/htscodecs/utils.h |
67.32% (173/257) |
66.67% (4/6) |
90.16% (110/122) |
src/htslib/htscodecs/htscodecs/varint.h |
33.47% (83/248) |
41.67% (5/12) |
44.70% (59/132) |
src/htslib/htslib/bgzf.h |
85.19% (23/27) |
100.00% (2/2) |
100.00% (11/11) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
68.57% (48/70) |
88.89% (8/9) |
78.72% (37/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/15) |
src/htslib/htslib/khash.h |
64.22% (131/204) |
53.85% (7/13) |
69.08% (143/207) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/34) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/122) |
src/htslib/htslib/kstring.h |
67.53% (183/271) |
76.19% (16/21) |
79.05% (83/105) |
src/htslib/htslib/sam.h |
76.21% (157/206) |
27.27% (3/11) |
87.59% (127/145) |
src/htslib/htslib/vcf.h |
64.38% (94/146) |
55.56% (10/18) |
81.31% (87/107) |
src/htslib/kstring.c |
63.23% (184/291) |
54.55% (6/11) |
52.84% (158/299) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
93.04% (147/158) |
src/htslib/multipart.c |
0.00% (0/148) |
0.00% (0/9) |
0.00% (0/148) |
src/htslib/region.c |
0.00% (0/157) |
0.00% (0/6) |
0.00% (0/158) |
src/htslib/sam.c |
35.81% (1702/4753) |
38.27% (62/162) |
36.23% (1768/4880) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
95.24% (20/21) |
src/htslib/sam_mods.c |
0.00% (0/339) |
0.00% (0/11) |
0.00% (0/358) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
3.21% (16/499) |
10.53% (2/19) |
1.41% (7/498) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
76.14% (67/88) |
src/htslib/textutils.c |
16.43% (58/353) |
13.64% (3/22) |
21.09% (66/313) |
src/htslib/textutils_internal.h |
76.19% (128/168) |
73.33% (11/15) |
96.18% (126/131) |
src/htslib/thread_pool.c |
0.00% (0/629) |
0.00% (0/33) |
0.00% (0/396) |
src/htslib/vcf.c |
48.28% (2421/5014) |
50.00% (72/144) |
46.23% (2677/5791) |
Totals |
41.91% (21040/50206) |
45.15% (768/1701) |
41.45% (17961/43334) |