View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
32.10% (556/1732) |
47.30% (35/74) |
35.10% (477/1359) |
src/htslib/cram/cram_codecs.c |
32.59% (901/2765) |
30.67% (50/163) |
33.02% (698/2114) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/12) |
src/htslib/cram/cram_decode.c |
23.33% (616/2640) |
52.17% (12/23) |
24.09% (615/2553) |
src/htslib/cram/cram_encode.c |
73.93% (2178/2946) |
91.43% (32/35) |
72.30% (2093/2895) |
src/htslib/cram/cram_index.c |
0.00% (0/612) |
0.00% (0/23) |
0.00% (0/519) |
src/htslib/cram/cram_io.c |
49.63% (1992/4014) |
65.45% (72/110) |
51.26% (1546/3016) |
src/htslib/cram/cram_io.h |
24.48% (35/143) |
54.55% (6/11) |
22.50% (27/120) |
src/htslib/cram/cram_stats.c |
69.75% (83/119) |
80.00% (4/5) |
63.16% (84/133) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/294) |
src/htslib/cram/open_trace_file.c |
29.36% (69/235) |
71.43% (5/7) |
22.54% (48/213) |
src/htslib/cram/pooled_alloc.c |
85.71% (60/70) |
83.33% (5/6) |
77.14% (27/35) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
80.49% (33/41) |
src/htslib/faidx.c |
35.46% (267/753) |
20.51% (8/39) |
37.25% (225/604) |
src/htslib/header.c |
38.63% (737/1908) |
50.00% (30/60) |
36.24% (714/1970) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (1/1) |
100.00% (1/1) |
src/htslib/hfile.c |
54.97% (431/784) |
61.76% (42/68) |
50.59% (300/593) |
src/htslib/hfile_gcs.c |
54.12% (46/85) |
75.00% (3/4) |
48.72% (19/39) |
src/htslib/hfile_libcurl.c |
29.80% (318/1067) |
54.55% (18/33) |
25.75% (214/831) |
src/htslib/hfile_s3.c |
50.40% (502/996) |
67.57% (25/37) |
50.21% (355/707) |
src/htslib/hfile_s3_write.c |
7.25% (40/552) |
16.00% (4/25) |
4.78% (12/251) |
src/htslib/hts.c |
15.14% (559/3693) |
18.70% (23/123) |
13.82% (520/3764) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.42% (3/722) |
src/htslib/hts_internal.h |
64.86% (24/37) |
66.67% (2/3) |
56.41% (44/78) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/57) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
36.45% (269/738) |
46.15% (6/13) |
39.85% (265/665) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
39.66% (23/58) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
75.51% (37/49) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
29.81% (313/1050) |
45.45% (10/22) |
31.27% (273/873) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
78.60% (202/257) |
75.00% (3/4) |
78.61% (136/173) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
80.65% (25/31) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
0.00% (0/240) |
0.00% (0/17) |
0.00% (0/67) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
0.00% (0/550) |
0.00% (0/6) |
0.00% (0/406) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
74.41% (349/469) |
100.00% (14/14) |
87.01% (268/308) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/484) |
0.00% (0/4) |
0.00% (0/410) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
94.65% (902/953) |
100.00% (7/7) |
91.79% (380/414) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/685) |
0.00% (0/7) |
0.00% (0/335) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/949) |
0.00% (0/4) |
0.00% (0/322) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
71.68% (830/1158) |
92.86% (13/14) |
76.66% (680/887) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.25% (85/272) |
50.00% (8/16) |
73.68% (28/38) |
src/htslib/htscodecs/htscodecs/rle.c |
82.91% (97/117) |
60.00% (3/5) |
81.43% (57/70) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
77.41% (826/1067) |
80.00% (28/35) |
72.10% (664/921) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
73.85% (48/65) |
src/htslib/htscodecs/htscodecs/utils.h |
59.53% (153/257) |
66.67% (4/6) |
70.49% (86/122) |
src/htslib/htscodecs/htscodecs/varint.h |
22.58% (56/248) |
25.00% (3/12) |
30.30% (40/132) |
src/htslib/htslib/bgzf.h |
85.19% (23/27) |
100.00% (2/2) |
100.00% (11/11) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
64.29% (45/70) |
77.78% (7/9) |
74.47% (35/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/15) |
src/htslib/htslib/khash.h |
62.75% (128/204) |
53.85% (7/13) |
67.15% (139/207) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/34) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/122) |
src/htslib/htslib/kstring.h |
67.53% (183/271) |
76.19% (16/21) |
79.05% (83/105) |
src/htslib/htslib/sam.h |
72.33% (149/206) |
27.27% (3/11) |
80.00% (116/145) |
src/htslib/htslib/vcf.h |
64.38% (94/146) |
55.56% (10/18) |
81.31% (87/107) |
src/htslib/kstring.c |
63.23% (184/291) |
54.55% (6/11) |
52.51% (157/299) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
93.04% (147/158) |
src/htslib/multipart.c |
0.00% (0/148) |
0.00% (0/9) |
0.00% (0/148) |
src/htslib/region.c |
0.00% (0/157) |
0.00% (0/6) |
0.00% (0/158) |
src/htslib/sam.c |
35.05% (1666/4753) |
38.27% (62/162) |
35.16% (1716/4880) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
95.24% (20/21) |
src/htslib/sam_mods.c |
0.00% (0/329) |
0.00% (0/11) |
0.00% (0/341) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
3.22% (16/497) |
10.53% (2/19) |
1.41% (7/496) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
73.85% (96/130) |
100.00% (4/4) |
75.00% (66/88) |
src/htslib/textutils.c |
16.15% (57/353) |
13.64% (3/22) |
20.77% (65/313) |
src/htslib/textutils_internal.h |
76.19% (128/168) |
73.33% (11/15) |
96.18% (126/131) |
src/htslib/thread_pool.c |
0.00% (0/629) |
0.00% (0/33) |
0.00% (0/396) |
src/htslib/vcf.c |
46.36% (2325/5015) |
49.31% (71/144) |
44.83% (2599/5798) |
Totals |
38.17% (19165/50211) |
43.13% (734/1702) |
38.01% (16479/43349) |