View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
34.24% (594/1735) |
47.30% (35/74) |
36.58% (590/1613) |
src/htslib/bgzf_internal.h |
70.59% (12/17) |
66.67% (2/3) |
43.18% (19/44) |
src/htslib/cram/cram_codecs.c |
36.87% (1016/2756) |
31.29% (51/163) |
38.45% (901/2343) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/13) |
src/htslib/cram/cram_decode.c |
26.89% (711/2644) |
52.17% (12/23) |
27.77% (754/2715) |
src/htslib/cram/cram_encode.c |
76.65% (2268/2959) |
91.43% (32/35) |
73.05% (2307/3158) |
src/htslib/cram/cram_index.c |
0.00% (0/611) |
0.00% (0/23) |
0.00% (0/566) |
src/htslib/cram/cram_io.c |
58.83% (2356/4005) |
70.91% (78/110) |
56.76% (1981/3490) |
src/htslib/cram/cram_io.h |
32.87% (47/143) |
54.55% (6/11) |
37.19% (45/121) |
src/htslib/cram/cram_stats.c |
80.67% (96/119) |
100.00% (5/5) |
73.62% (120/163) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/350) |
src/htslib/cram/open_trace_file.c |
30.04% (70/233) |
71.43% (5/7) |
23.85% (57/239) |
src/htslib/cram/pooled_alloc.c |
91.43% (64/70) |
100.00% (6/6) |
76.09% (35/46) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
73.58% (39/53) |
src/htslib/faidx.c |
37.30% (279/748) |
20.51% (8/39) |
35.71% (250/700) |
src/htslib/header.c |
44.36% (948/2137) |
58.21% (39/67) |
39.95% (1075/2691) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (2/2) |
80.00% (24/30) |
src/htslib/hfile.c |
61.29% (475/775) |
67.65% (46/68) |
56.03% (423/755) |
src/htslib/hfile_gcs.c |
54.22% (45/83) |
75.00% (3/4) |
50.00% (26/52) |
src/htslib/hfile_libcurl.c |
38.77% (411/1060) |
66.67% (22/33) |
34.79% (381/1095) |
src/htslib/hfile_s3.c |
55.10% (546/991) |
75.68% (28/37) |
54.56% (449/823) |
src/htslib/hfile_s3_write.c |
8.03% (44/548) |
20.00% (5/25) |
7.05% (27/383) |
src/htslib/hts.c |
18.23% (673/3691) |
20.16% (25/124) |
16.47% (700/4251) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.40% (3/755) |
src/htslib/hts_internal.h |
64.86% (24/37) |
66.67% (2/3) |
59.26% (48/81) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/66) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
41.90% (308/735) |
46.15% (6/13) |
43.46% (339/780) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
38.98% (23/59) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
74.51% (38/51) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
32.82% (344/1048) |
45.45% (10/22) |
35.40% (325/918) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
83.66% (215/257) |
75.00% (3/4) |
80.77% (147/182) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
76.19% (32/42) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
31.25% (75/240) |
35.29% (6/17) |
18.64% (33/177) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
49.91% (274/549) |
50.00% (3/6) |
53.32% (241/452) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
77.14% (361/468) |
100.00% (14/14) |
91.93% (296/322) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/482) |
0.00% (0/4) |
0.00% (0/449) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
96.63% (918/950) |
100.00% (7/7) |
93.41% (510/546) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/682) |
0.00% (0/7) |
0.00% (0/415) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/947) |
0.00% (0/4) |
0.00% (0/382) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
81.80% (962/1176) |
86.67% (13/15) |
84.62% (847/1001) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.25% (85/272) |
50.00% (8/16) |
60.56% (43/71) |
src/htslib/htscodecs/htscodecs/rle.c |
89.66% (104/116) |
60.00% (3/5) |
86.49% (64/74) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
87.34% (931/1066) |
91.43% (32/35) |
85.70% (869/1014) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
64.86% (48/74) |
src/htslib/htscodecs/htscodecs/utils.h |
67.32% (173/257) |
66.67% (4/6) |
90.32% (112/124) |
src/htslib/htscodecs/htscodecs/varint.h |
33.47% (83/248) |
41.67% (5/12) |
44.70% (59/132) |
src/htslib/htslib/bgzf.h |
85.19% (23/27) |
100.00% (2/2) |
100.00% (11/11) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
68.57% (48/70) |
88.89% (8/9) |
78.72% (37/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/18) |
src/htslib/htslib/khash.h |
58.48% (131/224) |
50.00% (7/14) |
78.69% (144/183) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/41) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/125) |
src/htslib/htslib/kstring.h |
66.79% (181/271) |
76.19% (16/21) |
67.44% (87/129) |
src/htslib/htslib/sam.h |
76.21% (157/206) |
27.27% (3/11) |
86.18% (131/152) |
src/htslib/htslib/vcf.h |
64.38% (94/146) |
55.56% (10/18) |
81.48% (88/108) |
src/htslib/kstring.c |
82.55% (246/298) |
72.73% (8/11) |
68.90% (226/328) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
92.45% (147/159) |
src/htslib/multipart.c |
0.00% (0/146) |
0.00% (0/9) |
0.00% (0/173) |
src/htslib/region.c |
0.00% (0/156) |
0.00% (0/6) |
0.00% (0/175) |
src/htslib/sam.c |
33.28% (1546/4645) |
36.02% (58/161) |
31.62% (1676/5301) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
88.00% (22/25) |
src/htslib/sam_mods.c |
0.00% (0/345) |
0.00% (0/11) |
0.00% (0/366) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
3.23% (16/496) |
10.53% (2/19) |
1.45% (8/550) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
79.21% (80/101) |
src/htslib/textutils.c |
16.48% (58/352) |
13.64% (3/22) |
20.67% (68/329) |
src/htslib/textutils_internal.h |
76.19% (128/168) |
73.33% (11/15) |
84.30% (145/172) |
src/htslib/thread_pool.c |
0.00% (0/627) |
0.00% (0/33) |
0.00% (0/535) |
src/htslib/vcf.c |
49.03% (2524/5148) |
50.68% (75/148) |
46.62% (2997/6428) |
Totals |
42.27% (21337/50482) |
45.78% (787/1719) |
40.88% (20187/49379) |