View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
32.51% (565/1738) |
47.30% (35/74) |
34.15% (555/1625) |
src/htslib/bgzf_internal.h |
70.59% (12/17) |
66.67% (2/3) |
43.18% (19/44) |
src/htslib/cram/cram_codecs.c |
34.83% (960/2756) |
31.29% (51/163) |
36.28% (850/2343) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/13) |
src/htslib/cram/cram_decode.c |
24.41% (646/2646) |
52.17% (12/23) |
25.82% (702/2719) |
src/htslib/cram/cram_encode.c |
73.81% (2184/2959) |
88.57% (31/35) |
70.74% (2234/3158) |
src/htslib/cram/cram_index.c |
0.00% (0/611) |
0.00% (0/23) |
0.00% (0/566) |
src/htslib/cram/cram_io.c |
53.38% (2138/4005) |
67.27% (74/110) |
51.86% (1810/3490) |
src/htslib/cram/cram_io.h |
31.47% (45/143) |
54.55% (6/11) |
35.54% (43/121) |
src/htslib/cram/cram_stats.c |
69.75% (83/119) |
80.00% (4/5) |
58.28% (95/163) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/350) |
src/htslib/cram/open_trace_file.c |
29.61% (69/233) |
71.43% (5/7) |
21.76% (52/239) |
src/htslib/cram/pooled_alloc.c |
91.43% (64/70) |
100.00% (6/6) |
76.09% (35/46) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
73.58% (39/53) |
src/htslib/faidx.c |
35.96% (269/748) |
20.51% (8/39) |
34.71% (243/700) |
src/htslib/header.c |
42.40% (906/2137) |
58.21% (39/67) |
38.76% (1043/2691) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (2/2) |
80.00% (24/30) |
src/htslib/hfile.c |
62.79% (486/774) |
70.59% (48/68) |
56.90% (429/754) |
src/htslib/hfile_gcs.c |
54.22% (45/83) |
75.00% (3/4) |
48.08% (25/52) |
src/htslib/hfile_libcurl.c |
21.04% (223/1060) |
39.39% (13/33) |
17.17% (188/1095) |
src/htslib/hfile_s3.c |
36.97% (596/1612) |
53.85% (35/65) |
34.85% (460/1320) |
src/htslib/hts.c |
16.65% (619/3717) |
20.00% (25/125) |
15.54% (662/4260) |
src/htslib/hts_expr.c |
0.47% (3/639) |
4.55% (1/22) |
0.40% (3/755) |
src/htslib/hts_internal.h |
64.86% (24/37) |
66.67% (2/3) |
59.26% (48/81) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/66) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
32.93% (242/735) |
38.46% (5/13) |
32.56% (254/780) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
35.29% (36/102) |
31.25% (5/16) |
38.98% (23/59) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
74.51% (38/51) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
31.58% (331/1048) |
45.45% (10/22) |
33.88% (311/918) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
67.32% (173/257) |
75.00% (3/4) |
63.19% (115/182) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
89.09% (49/55) |
100.00% (4/4) |
76.19% (32/42) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
0.00% (0/240) |
0.00% (0/17) |
0.00% (0/177) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
12.93% (71/549) |
50.00% (3/6) |
11.73% (53/452) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
75.64% (354/468) |
100.00% (14/14) |
89.44% (288/322) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/482) |
0.00% (0/4) |
0.00% (0/449) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
95.37% (906/950) |
100.00% (7/7) |
91.94% (502/546) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/682) |
0.00% (0/7) |
0.00% (0/415) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/947) |
0.00% (0/4) |
0.00% (0/382) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
77.47% (911/1176) |
86.67% (13/15) |
80.62% (807/1001) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
31.25% (85/272) |
50.00% (8/16) |
60.56% (43/71) |
src/htslib/htscodecs/htscodecs/rle.c |
87.07% (101/116) |
60.00% (3/5) |
81.08% (60/74) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
73.45% (783/1066) |
77.14% (27/35) |
70.41% (714/1014) |
src/htslib/htscodecs/htscodecs/utils.c |
62.03% (49/79) |
80.00% (4/5) |
64.86% (48/74) |
src/htslib/htscodecs/htscodecs/utils.h |
50.97% (131/257) |
66.67% (4/6) |
50.00% (62/124) |
src/htslib/htscodecs/htscodecs/varint.h |
22.58% (56/248) |
25.00% (3/12) |
30.30% (40/132) |
src/htslib/htslib/bgzf.h |
85.19% (23/27) |
100.00% (2/2) |
100.00% (11/11) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
64.29% (45/70) |
77.78% (7/9) |
74.47% (35/47) |
src/htslib/htslib/hts.h |
40.43% (19/47) |
36.36% (4/11) |
45.45% (10/22) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/18) |
src/htslib/htslib/khash.h |
56.89% (128/225) |
50.00% (7/14) |
76.50% (140/183) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/41) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/125) |
src/htslib/htslib/kstring.h |
66.42% (180/271) |
76.19% (16/21) |
67.44% (87/129) |
src/htslib/htslib/sam.h |
73.30% (151/206) |
27.27% (3/11) |
79.61% (121/152) |
src/htslib/htslib/vcf.h |
64.38% (94/146) |
55.56% (10/18) |
81.48% (88/108) |
src/htslib/kstring.c |
70.81% (211/298) |
63.64% (7/11) |
58.54% (192/328) |
src/htslib/md5.c |
88.52% (162/183) |
85.71% (6/7) |
92.45% (147/159) |
src/htslib/multipart.c |
0.00% (0/146) |
0.00% (0/9) |
0.00% (0/173) |
src/htslib/region.c |
0.00% (0/156) |
0.00% (0/6) |
0.00% (0/175) |
src/htslib/sam.c |
31.39% (1458/4645) |
36.02% (58/161) |
29.71% (1573/5295) |
src/htslib/sam_internal.h |
78.43% (40/51) |
100.00% (4/4) |
88.00% (22/25) |
src/htslib/sam_mods.c |
0.00% (0/345) |
0.00% (0/11) |
0.00% (0/366) |
src/htslib/simd.c |
100.00% (28/28) |
100.00% (2/2) |
100.00% (6/6) |
src/htslib/tbx.c |
3.22% (16/497) |
11.11% (2/18) |
1.45% (8/553) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
75.38% (98/130) |
100.00% (4/4) |
79.21% (80/101) |
src/htslib/textutils.c |
16.48% (58/352) |
13.64% (3/22) |
20.67% (68/329) |
src/htslib/textutils_internal.h |
76.19% (128/168) |
73.33% (11/15) |
84.30% (145/172) |
src/htslib/thread_pool.c |
0.00% (0/627) |
0.00% (0/33) |
0.00% (0/535) |
src/htslib/vcf.c |
47.60% (2461/5170) |
50.00% (74/148) |
45.50% (2961/6508) |
Totals |
38.93% (19704/50609) |
44.08% (759/1722) |
37.64% (18667/49594) |