Fuzz introspector: hts_open_fuzzer
For issues and ideas: https://github.com/ossf/fuzz-introspector/issues

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
6475 6475 1 :

['cram_write_eof_block']

6501 7380 cram_close call site: 03338 /src/htslib/cram/cram_io.c:5528
6370 6370 2 :

['cram_update_curr_slice', 'cram_flush_container_mt']

17046 18124 cram_close call site: 02099 /src/htslib/cram/cram_io.c:5499
4175 4175 4 :

['pthread_mutex_destroy', 'hts_tpool_process_destroy', 'cram_flush_result', 'hts_tpool_process_flush']

10676 11555 cram_close call site: 03332 /src/htslib/cram/cram_io.c:5510
2787 2787 1 :

['hts_process_opts']

2795 2795 hts_hopen call site: 01627 /src/htslib/hts.c:1503
2701 2719 5 :

['hclose_abruptly', '__errno_location', 'strerror', 'hts_log', 'hts_opt_apply']

2701 2719 hts_open_format call site: 01933 /src/htslib/hts.c:900
1023 1079 10 :

['hts_idx_push', 'bcf_strerror', 'u32_to_le.1813', 'float_to_le.1852', 'hts_log', 'bcf1_sync', 'i32_to_le.1812', 'u16_to_le.1814', 'bgzf_write', 'bcf_seqname_safe']

1023 1079 bcf_write call site: 04877 /src/htslib/vcf.c:1970
734 734 1 :

['bcf_hdr_append']

734 734 bcf_hdr_init call site: 04392 /src/htslib/vcf.c:1209
630 640 10 :

['memcmp', 'hts_md5_update', 'hts_md5_init', 'sam_hdr_find_tag_id', 'md5_print', 'sam_hdr_tid2name', 'ks_free.2171', 'cram_get_block_by_id', 'hts_md5_destroy', 'hts_md5_final']

1876 3922 cram_decode_slice call site: 03187 /src/htslib/cram/cram_decode.c:2395
410 7687 19 :

['cram_read_slice', 'cram_free_slice', 'pthread_mutex_lock', 'hts_tpool_process_len', 'hts_tpool_next_result_wait', 'cram_free_container', 'hts_tpool_process_qsize', 'hts_tpool_delete_result', 'cram_decode_slice_mt', 'hts_tpool_process_empty', 'cram_seek', 'cram_read_container', 'pthread_mutex_unlock', 'free', 'sam_hrecs_sort_order', 'hts_tpool_result_data', 'cram_decode_compression_header', 'cram_read_block', 'hts_log']

410 7687 cram_next_slice call site: 03662 /src/htslib/cram/cram_decode.c:3228
394 394 2 :

['bgzf_flush_try', 'bgzf_write']

717 767 sam_write1 call site: 04338 /src/htslib/sam.c:4462
394 394 2 :

['bgzf_flush_try', 'bgzf_write']

535 545 vcf_write call site: 04879 /src/htslib/vcf.c:3444
387 387 2 :

['bgzf_flush', 'bgzf_write']

387 387 vcf_hdr_write call site: 04604 /src/htslib/vcf.c:2267

Fuzzer calltree

0 LLVMFuzzerTestOneInput [function] [call site] 00000
1 abort [call site] 00001
1 hopen [function] [call site] 00002
2 find_scheme_handler [function] [call site] 00003
3 isalnum_c [function] [call site] 00004
4 __ctype_b_loc [call site] 00005
3 tolower_c [function] [call site] 00006
4 tolower [call site] 00007
3 pthread_mutex_lock [call site] 00008
3 load_hfile_plugins [function] [call site] 00009
4 kh_init_scheme_string [function] [call site] 00010
5 calloc [call site] 00011
4 hfile_add_scheme_handler [function] [call site] 00012
5 try_exe_add_scheme_handler [function] [call site] 00013
5 hts_log [function] [call site] 00014
6 __errno_location [call site] 00015
6 get_severity_tag [function] [call site] 00016
6 fprintf [call site] 00017
6 vfprintf [call site] 00018
6 fprintf [call site] 00019
6 __errno_location [call site] 00020
5 kh_put_scheme_string [function] [call site] 00021
6 kh_resize_scheme_string [function] [call site] 00022
7 __ac_X31_hash_string [function] [call site] 00023
5 __errno_location [call site] 00024
5 hts_log [function] [call site] 00025
5 priority [function] [call site] 00026
4 hfile_add_scheme_handler [function] [call site] 00027
4 hfile_add_scheme_handler [function] [call site] 00028
4 init_add_plugin [function] [call site] 00029
5 hts_log [function] [call site] 00030
5 hts_log [function] [call site] 00031
5 hts_log [function] [call site] 00032
4 init_add_plugin [function] [call site] 00033
4 init_add_plugin [function] [call site] 00034
4 hfile_plugin_init_libcurl [function] [call site] 00035
5 hts_version [function] [call site] 00036
5 curl_global_init [call site] 00037
5 easy_errno [function] [call site] 00038
6 curl_easy_getinfo [call site] 00039
6 curl_easy_getinfo [call site] 00040
6 http_status_errno [function] [call site] 00041
6 curl_easy_strerror [call site] 00042
6 hts_log [function] [call site] 00043
5 __errno_location [call site] 00044
5 curl_share_init [call site] 00045
5 curl_global_cleanup [call site] 00046
5 curl_share_setopt [call site] 00047
5 share_lock [function] [call site] 00048
6 pthread_mutex_lock [call site] 00049
5 curl_share_setopt [call site] 00050
5 share_unlock [function] [call site] 00051
6 pthread_mutex_unlock [call site] 00052
5 curl_share_setopt [call site] 00053
5 curl_share_cleanup [call site] 00054
5 curl_global_cleanup [call site] 00055
5 __errno_location [call site] 00056
5 getenv [call site] 00057
5 strdup [call site] 00058
5 kh_init_auth_map [function] [call site] 00059
6 calloc [call site] 00060
5 __errno_location [call site] 00061
5 kh_destroy_auth_map [function] [call site] 00062
5 curl_share_cleanup [call site] 00063
5 curl_global_cleanup [call site] 00064
5 __errno_location [call site] 00065
5 getenv [call site] 00066
5 strcmp [call site] 00067
5 curl_version_info [call site] 00068
5 ksprintf [function] [call site] 00069
6 kvsprintf [function] [call site] 00070
7 kputd [function] [call site] 00071
8 kputsn [function] [call site] 00072
9 ks_resize [function] [call site] 00073
10 realloc [call site] 00074
8 kputsn [function] [call site] 00075
8 kputc [function] [call site] 00076
9 ks_resize [function] [call site] 00077
8 ks_resize [function] [call site] 00078
8 sprintf [call site] 00079
8 strlen [call site] 00080
8 kputsn [function] [call site] 00081
7 vsnprintf [call site] 00082
7 ks_resize [function] [call site] 00083
7 vsnprintf [call site] 00084
5 libcurl_exit [function] [call site] 00085
6 curl_share_cleanup [call site] 00086
6 free_auth [function] [call site] 00087
7 pthread_mutex_destroy [call site] 00088
6 kh_destroy_auth_map [function] [call site] 00089
6 curl_global_cleanup [call site] 00090
5 hfile_add_scheme_handler [function] [call site] 00091
4 init_add_plugin [function] [call site] 00092
4 hfile_plugin_init_gcs [function] [call site] 00093
5 hfile_add_scheme_handler [function] [call site] 00094
5 hfile_add_scheme_handler [function] [call site] 00095
5 hfile_add_scheme_handler [function] [call site] 00096
4 init_add_plugin [function] [call site] 00097
4 hfile_plugin_init_s3 [function] [call site] 00098
5 hfile_add_scheme_handler [function] [call site] 00099
5 hfile_add_scheme_handler [function] [call site] 00100
5 hfile_add_scheme_handler [function] [call site] 00101
4 init_add_plugin [function] [call site] 00102
4 hfile_plugin_init_s3_write [function] [call site] 00103
5 hts_version [function] [call site] 00104
5 curl_global_init [call site] 00105
5 curl_share_init [call site] 00106
5 curl_global_cleanup [call site] 00107
5 __errno_location [call site] 00108
5 curl_share_setopt [call site] 00109
5 share_lock [function] [call site] 00110
6 pthread_mutex_lock [call site] 00111
5 curl_share_setopt [call site] 00112
5 share_unlock [function] [call site] 00113
6 pthread_mutex_unlock [call site] 00114
5 curl_share_setopt [call site] 00115
5 curl_share_cleanup [call site] 00116
5 curl_global_cleanup [call site] 00117
5 __errno_location [call site] 00118
5 curl_version_info [call site] 00119
5 ksprintf [function] [call site] 00120
5 s3_write_exit [function] [call site] 00121
6 curl_share_cleanup [call site] 00122
6 curl_global_cleanup [call site] 00123
5 hfile_add_scheme_handler [function] [call site] 00124
5 hfile_add_scheme_handler [function] [call site] 00125
5 hfile_add_scheme_handler [function] [call site] 00126
4 atexit [call site] 00127
4 hfile_exit [function] [call site] 00128
5 hfile_shutdown [function] [call site] 00129
6 pthread_mutex_lock [call site] 00130
6 kh_destroy_scheme_string [function] [call site] 00131
6 pthread_mutex_unlock [call site] 00132
5 pthread_mutex_destroy [call site] 00133
3 pthread_mutex_unlock [call site] 00134
3 pthread_mutex_unlock [call site] 00135
3 kh_get_scheme_string [function] [call site] 00136
2 strchr [call site] 00137
2 strcmp [call site] 00138
2 hopen_fd_stdinout [function] [call site] 00139
3 strchr [call site] 00140
3 hdopen [function] [call site] 00141
4 blksize [function] [call site] 00142
5 fstat [call site] 00143
4 strchr [call site] 00144
2 hopen_fd [function] [call site] 00145
3 hfile_oflags [function] [call site] 00146
3 open [call site] 00147
3 blksize [function] [call site] 00148
3 __errno_location [call site] 00149
3 hfile_destroy [function] [call site] 00150
4 __errno_location [call site] 00151
4 __errno_location [call site] 00152
1 hts_hopen [function] [call site] 00153
2 calloc [call site] 00154
2 strdup [call site] 00155
2 ed_is_big [function] [call site] 00156
2 strchr [call site] 00157
2 strncpy [call site] 00158
2 strncpy [call site] 00159
2 strchr [call site] 00160
2 hts_detect_format2 [function] [call site] 00161
3 hpeek [function] [call site] 00162
4 refill_buffer [function] [call site] 00163
5 __errno_location [call site] 00164
3 memcmp [call site] 00165
3 memcmp [call site] 00166
3 decompress_peek_gz [function] [call site] 00167
4 hpeek [function] [call site] 00168
4 inflateInit2_ [call site] 00169
4 inflate [call site] 00170
4 inflateEnd [call site] 00171
3 memcmp [call site] 00172
3 memcmp [call site] 00173
3 memcmp [call site] 00174
3 memcmp [call site] 00175
3 decompress_peek_xz [function] [call site] 00176
4 hpeek [function] [call site] 00177
4 lzma_easy_decoder_memusage [call site] 00178
4 lzma_code [call site] 00179
4 lzma_end [call site] 00180
4 lzma_end [call site] 00181
3 memcmp [call site] 00182
3 hpeek [function] [call site] 00183
3 strcmp [call site] 00184
3 find_file_extension [function] [call site] 00185
4 strstr [call site] 00186
4 strlen [call site] 00187
3 tolower_c [function] [call site] 00188
3 memcmp [call site] 00189
3 memcmp [call site] 00190
3 memcmp [call site] 00191
3 memcmp [call site] 00192
3 memcmp [call site] 00193
3 memcmp [call site] 00194
3 memcmp [call site] 00195
3 strcmp [call site] 00196
3 memcmp [call site] 00197
3 parse_version [function] [call site] 00198
4 isdigit_c [function] [call site] 00199
4 isdigit_c [function] [call site] 00200
3 memcmp [call site] 00201
3 memcmp [call site] 00202
3 memcmp [call site] 00203
3 memcmp [call site] 00204
3 parse_version [function] [call site] 00205
3 memcmp [call site] 00206
3 cmp_nonblank [function] [call site] 00207
4 isspace_c [function] [call site] 00208
5 __ctype_b_loc [call site] 00209
3 memcmp [call site] 00210
3 is_fastaq [function] [call site] 00211
4 memchr [call site] 00212
4 is_text_only [function] [call site] 00213
4 toupper [call site] 00214
3 is_fastaq [function] [call site] 00215
3 parse_tabbed_text [function] [call site] 00216
4 isdigit_c [function] [call site] 00217
4 strchr [call site] 00218
4 isdigit_c [function] [call site] 00219
3 colmatch [function] [call site] 00220
3 colmatch [function] [call site] 00221
3 strstr [call site] 00222
3 colmatch [function] [call site] 00223
3 strstr [call site] 00224
3 colmatch [function] [call site] 00225
3 colmatch [function] [call site] 00226
3 is_text_only [function] [call site] 00227
2 __errno_location [call site] 00228
2 hopen_htsget_redirect [function] [call site] 00229
3 hfile_init [function] [call site] 00230
4 strchr [call site] 00231
4 hfile_destroy [function] [call site] 00232
3 parse_ga4gh_redirect_json [function] [call site] 00233
4 hts_json_fnext [function] [call site] 00234
5 hgetc [function] [call site] 00235
6 hgetc2 [function] [call site] 00236
7 refill_buffer [function] [call site] 00237
5 fscan_string [function] [call site] 00238
6 hgetc [function] [call site] 00239
6 hgetc [function] [call site] 00240
6 kputc [function] [call site] 00241
6 kputc [function] [call site] 00242
6 kputc [function] [call site] 00243
6 kputc [function] [call site] 00244
6 kputc [function] [call site] 00245
6 kputc [function] [call site] 00246
6 hgetc [function] [call site] 00247
6 dehex [function] [call site] 00248
6 hgetc [function] [call site] 00249
6 dehex [function] [call site] 00250
6 hgetc [function] [call site] 00251
6 dehex [function] [call site] 00252
6 hgetc [function] [call site] 00253
6 dehex [function] [call site] 00254
6 encode_utf8 [function] [call site] 00255
6 kputsn [function] [call site] 00256
6 kputc [function] [call site] 00257
5 kputsn [function] [call site] 00258
5 kputc [function] [call site] 00259
5 hpeek [function] [call site] 00260
5 strchr [call site] 00261
5 hgetc [function] [call site] 00262
5 kputc [function] [call site] 00263
5 token_type [function] [call site] 00264
6 strcmp [call site] 00265
6 strcmp [call site] 00266
6 strcmp [call site] 00267
4 hts_json_fnext [function] [call site] 00268
4 strcmp [call site] 00269
4 parse_ga4gh_body_json [function] [call site] 00270
5 hts_json_fnext [function] [call site] 00271
5 hts_json_fnext [function] [call site] 00272
5 strcmp [call site] 00273
5 hts_json_fnext [function] [call site] 00274
5 hts_json_fnext [function] [call site] 00275
5 hts_realloc_or_die [function] [call site] 00276
6 __errno_location [call site] 00277
6 realloc [call site] 00278
6 __errno_location [call site] 00279
6 hts_log [function] [call site] 00280
6 exit [call site] 00281
5 hts_json_fnext [function] [call site] 00282
5 hts_json_fnext [function] [call site] 00283
5 kputs [function] [call site] 00284
6 __errno_location [call site] 00285
6 strlen [call site] 00286
6 kputsn [function] [call site] 00287
5 kputs [function] [call site] 00288
5 hts_realloc_or_die [function] [call site] 00289
5 ks_release [function] [call site] 00290
5 hts_json_fskip_value [function] [call site] 00291
6 skip_value [function] [call site] 00292
5 strcmp [call site] 00293
5 hts_json_fnext [function] [call site] 00294
5 hts_log [function] [call site] 00295
5 hts_json_fskip_value [function] [call site] 00296
4 hts_json_fnext [function] [call site] 00297
3 free_all_parts [function] [call site] 00298
4 free_part [function] [call site] 00299
3 hfile_destroy [function] [call site] 00300
3 __errno_location [call site] 00301
2 hts_crypt4gh_redirect [function] [call site] 00302
3 strlen [call site] 00303
3 snprintf [call site] 00304
3 hopen [function] [call site] 00305
2 hts_detect_format2 [function] [call site] 00306
2 strchr [call site] 00307
2 strchr [call site] 00308
2 strchr [call site] 00309
2 strchr [call site] 00310
2 strchr [call site] 00311
2 strchr [call site] 00312
2 strchr [call site] 00313
2 strchr [call site] 00314
2 abort [call site] 00315
2 format_category [function] [call site] 00316
2 __errno_location [call site] 00317
2 bgzf_hopen [function] [call site] 00318
3 bgzf_read_init [function] [call site] 00319
4 hpeek [function] [call site] 00320
4 calloc [call site] 00321
4 memcmp [call site] 00322
4 memcmp [call site] 00323
4 hts_log [function] [call site] 00324
4 razf_info [function] [call site] 00325
5 strcmp [call site] 00326
5 hseek [function] [call site] 00327
6 writebuffer_is_nonempty [function] [call site] 00328
6 flush_buffer [function] [call site] 00329
7 __errno_location [call site] 00330
6 htell [function] [call site] 00331
6 __errno_location [call site] 00332
6 __errno_location [call site] 00333
6 __errno_location [call site] 00334
5 hread [function] [call site] 00335
6 hread2 [function] [call site] 00336
7 __errno_location [call site] 00337
7 refill_buffer [function] [call site] 00338
5 ed_is_big [function] [call site] 00339
5 hts_log [function] [call site] 00340
5 hts_log [function] [call site] 00341
4 __errno_location [call site] 00342
4 kh_init_cache [function] [call site] 00343
5 calloc [call site] 00344
3 strchr [call site] 00345
3 bgzf_write_init [function] [call site] 00346
4 calloc [call site] 00347
4 mode2level [function] [call site] 00348
5 strchr [call site] 00349
4 strchr [call site] 00350
4 deflateInit2_ [call site] 00351
4 bgzf_zerr [function] [call site] 00352
5 __errno_location [call site] 00353
5 snprintf [call site] 00354
4 hts_log [function] [call site] 00355
4 __errno_location [call site] 00356
4 hts_log [function] [call site] 00357
3 __errno_location [call site] 00358
3 ed_is_big [function] [call site] 00359
2 cram_dopen [function] [call site] 00360
3 calloc [call site] 00361
3 cram_read_file_def [function] [call site] 00362
4 hread [function] [call site] 00363
4 memcmp [call site] 00364
4 hts_log [function] [call site] 00365
3 cram_init_tables [function] [call site] 00366
4 cram_init_varint [function] [call site] 00367
5 uint7_get_32 [function] [call site] 00368
6 var_get_u32 [function] [call site] 00369
5 sint7_get_32 [function] [call site] 00370
6 var_get_s32 [function] [call site] 00371
7 var_get_u32 [function] [call site] 00372
5 uint7_get_64 [function] [call site] 00373
6 var_get_u64 [function] [call site] 00374
5 sint7_get_64 [function] [call site] 00375
6 var_get_s64 [function] [call site] 00376
7 var_get_u64 [function] [call site] 00377
5 uint7_put_32 [function] [call site] 00378
6 var_put_u32 [function] [call site] 00379
7 var_put_u32_safe [function] [call site] 00380
5 sint7_put_32 [function] [call site] 00381
6 var_put_s32 [function] [call site] 00382
7 var_put_u32 [function] [call site] 00383
5 uint7_put_64 [function] [call site] 00384
6 var_put_u64 [function] [call site] 00385
7 var_put_u64_safe [function] [call site] 00386
5 sint7_put_64 [function] [call site] 00387
6 var_put_s64 [function] [call site] 00388
7 var_put_u64 [function] [call site] 00389
5 uint7_put_blk_32 [function] [call site] 00390
6 var_put_u32 [function] [call site] 00391
6 block_append [function] [call site] 00392
7 block_grow [function] [call site] 00393
8 block_resize [function] [call site] 00394
9 block_resize_exact [function] [call site] 00395
10 realloc [call site] 00396
5 sint7_put_blk_32 [function] [call site] 00397
6 var_put_s32 [function] [call site] 00398
6 block_append [function] [call site] 00399
5 uint7_put_blk_64 [function] [call site] 00400
6 var_put_u64 [function] [call site] 00401
6 block_append [function] [call site] 00402
5 sint7_put_blk_64 [function] [call site] 00403
6 var_put_s64 [function] [call site] 00404
6 block_append [function] [call site] 00405
5 uint7_size [function] [call site] 00406
6 var_size_u64 [function] [call site] 00407
5 uint7_decode_crc32 [function] [call site] 00408
6 hgetc [function] [call site] 00409
6 crc32 [call site] 00410
5 sint7_decode_crc32 [function] [call site] 00411
6 hgetc [function] [call site] 00412
6 crc32 [call site] 00413
5 uint7_decode_crc64 [function] [call site] 00414
6 hgetc [function] [call site] 00415
6 crc32 [call site] 00416
5 safe_itf8_get [function] [call site] 00417
5 safe_itf8_get [function] [call site] 00418
5 safe_ltf8_get [function] [call site] 00419
5 safe_ltf8_get [function] [call site] 00420
5 safe_itf8_put [function] [call site] 00421
6 itf8_put [function] [call site] 00422
5 safe_itf8_put [function] [call site] 00423
5 safe_ltf8_put [function] [call site] 00424
6 ltf8_put [function] [call site] 00425
5 safe_ltf8_put [function] [call site] 00426
5 itf8_put_blk [function] [call site] 00427
6 itf8_put [function] [call site] 00428
6 block_append [function] [call site] 00429
5 itf8_put_blk [function] [call site] 00430
5 ltf8_put_blk [function] [call site] 00431
6 ltf8_put [function] [call site] 00432
6 block_append [function] [call site] 00433
5 ltf8_put_blk [function] [call site] 00434
5 itf8_size [function] [call site] 00435
5 itf8_decode_crc [function] [call site] 00436
6 hgetc [function] [call site] 00437
6 hread [function] [call site] 00438
6 crc32 [call site] 00439
6 crc32 [call site] 00440
6 crc32 [call site] 00441
5 itf8_decode_crc [function] [call site] 00442
5 ltf8_decode_crc [function] [call site] 00443
6 hgetc [function] [call site] 00444
6 crc32 [call site] 00445
6 hgetc [function] [call site] 00446
6 crc32 [call site] 00447
6 hread [function] [call site] 00448
6 crc32 [call site] 00449
6 hread [function] [call site] 00450
6 crc32 [call site] 00451
6 hread [function] [call site] 00452
6 hread [function] [call site] 00453
6 crc32 [call site] 00454
6 hread [function] [call site] 00455
6 crc32 [call site] 00456
6 hread [function] [call site] 00457
6 crc32 [call site] 00458
6 hread [function] [call site] 00459
6 crc32 [call site] 00460
3 cram_read_SAM_hdr [function] [call site] 00461
4 int32_decode [function] [call site] 00462
5 hread [function] [call site] 00463
4 hread [function] [call site] 00464
4 cram_read_container [function] [call site] 00465
5 int32_decode [function] [call site] 00466
5 crc32 [call site] 00467
5 calloc [call site] 00468
5 __errno_location [call site] 00469
5 cram_free_container [function] [call site] 00470
6 cram_free_compression_header [function] [call site] 00471
7 kh_destroy_map [function] [call site] 00472
7 cram_free_block [function] [call site] 00473
7 kh_destroy_m_s2i [function] [call site] 00474
7 string_pool_destroy [function] [call site] 00475
6 cram_free_block [function] [call site] 00476
6 cram_free_slice [function] [call site] 00477
7 cram_free_block [function] [call site] 00478
7 cram_free_block [function] [call site] 00479
7 cram_free_slice_header [function] [call site] 00480
7 cram_free_block [function] [call site] 00481
7 cram_free_block [function] [call site] 00482
7 cram_free_block [function] [call site] 00483
7 cram_free_block [function] [call site] 00484
7 cram_free_block [function] [call site] 00485
7 cram_free_block [function] [call site] 00486
7 string_pool_destroy [function] [call site] 00487
7 kh_destroy_m_s2i [function] [call site] 00488
7 kh_destroy_m_s2i [function] [call site] 00489
6 cram_free_slice [function] [call site] 00490
6 cram_stats_free [function] [call site] 00491
7 kh_destroy_m_i2i [function] [call site] 00492
6 kh_destroy_m_tagmap [function] [call site] 00493
5 cram_free_container [function] [call site] 00494
5 int32_decode [function] [call site] 00495
5 cram_free_container [function] [call site] 00496
5 hts_log [function] [call site] 00497
5 cram_free_container [function] [call site] 00498
4 cram_free_container [function] [call site] 00499
4 cram_read_block [function] [call site] 00500
5 hgetc [function] [call site] 00501
5 crc32 [call site] 00502
5 hgetc [function] [call site] 00503
5 crc32 [call site] 00504
5 hread [function] [call site] 00505
5 hread [function] [call site] 00506
5 int32_decode [function] [call site] 00507
4 cram_free_container [function] [call site] 00508
4 cram_uncompress_block [function] [call site] 00509
5 crc32 [call site] 00510
5 hts_log [function] [call site] 00511
5 __assert_fail [call site] 00512
5 zlib_mem_inflate [function] [call site] 00513
6 inflateInit2_ [call site] 00514
6 hts_log [function] [call site] 00515
6 inflate [call site] 00516
6 hts_log [function] [call site] 00517
6 inflateEnd [call site] 00518
6 realloc [call site] 00519
6 inflateEnd [call site] 00520
6 inflateEnd [call site] 00521
5 BZ2_bzBuffToBuffDecompress [call site] 00522
5 lzma_mem_inflate [function] [call site] 00523
6 lzma_easy_decoder_memusage [call site] 00524
6 realloc [call site] 00525
6 lzma_code [call site] 00526
6 hts_log [function] [call site] 00527
6 lzma_code [call site] 00528
6 hts_log [function] [call site] 00529
6 realloc [call site] 00530
6 lzma_end [call site] 00531
6 lzma_end [call site] 00532
5 rans_uncompress [function] [call site] 00533
6 rans_uncompress_O1 [function] [call site] 00534
7 htscodecs_tls_calloc [function] [call site] 00535
8 htscodecs_tls_alloc [function] [call site] 00536
9 pthread_once [call site] 00537
9 htscodecs_tls_init [function] [call site] 00538
10 pthread_key_create [call site] 00539
10 htscodecs_tls_free_all [function] [call site] 00540
11 fprintf [call site] 00541
9 pthread_getspecific [call site] 00542
9 calloc [call site] 00543
9 pthread_setspecific [call site] 00544
9 fprintf [call site] 00545
9 calloc [call site] 00546
7 RansDecSymbolInit32 [function] [call site] 00547
8 __assert_fail [call site] 00548
8 __assert_fail [call site] 00549
7 RansDecInit [function] [call site] 00550
7 RansDecInit [function] [call site] 00551
7 RansDecInit [function] [call site] 00552
7 RansDecInit [function] [call site] 00553
7 RansDecAdvanceStep [function] [call site] 00554
7 RansDecAdvanceStep [function] [call site] 00555
7 RansDecAdvanceStep [function] [call site] 00556
7 RansDecAdvanceStep [function] [call site] 00557
7 RansDecRenorm2 [function] [call site] 00558
7 RansDecRenorm2 [function] [call site] 00559
7 RansDecRenormSafe [function] [call site] 00560
7 RansDecRenormSafe [function] [call site] 00561
7 RansDecRenormSafe [function] [call site] 00562
7 RansDecRenormSafe [function] [call site] 00563
7 RansDecGet [function] [call site] 00564
7 RansDecRenormSafe [function] [call site] 00565
7 htscodecs_tls_free [function] [call site] 00566
8 pthread_getspecific [call site] 00567
8 fprintf [call site] 00568
8 fprintf [call site] 00569
6 rans_uncompress_O0 [function] [call site] 00570
7 RansDecInit [function] [call site] 00571
7 RansDecInit [function] [call site] 00572
7 RansDecInit [function] [call site] 00573
7 RansDecInit [function] [call site] 00574
7 RansDecRenorm2 [function] [call site] 00575
7 RansDecRenorm2 [function] [call site] 00576
7 RansDecRenormSafe [function] [call site] 00577
7 RansDecRenormSafe [function] [call site] 00578
7 RansDecRenormSafe [function] [call site] 00579
7 RansDecRenormSafe [function] [call site] 00580
5 fqz_decompress [function] [call site] 00581
6 uncompress_block_fqz2f [function] [call site] 00582
7 var_get_u32 [function] [call site] 00583
7 fqz_read_parameters [function] [call site] 00584
8 read_array [function] [call site] 00585
8 fqz_read_parameters1 [function] [call site] 00586
9 read_array [function] [call site] 00587
9 read_array [function] [call site] 00588
9 read_array [function] [call site] 00589
8 fqz_free_parameters [function] [call site] 00590
7 fqz_create_models [function] [call site] 00591
8 htscodecs_tls_alloc [function] [call site] 00592
8 SIMPLE_MODEL256_init [function] [call site] 00593
8 SIMPLE_MODEL256_init [function] [call site] 00594
8 SIMPLE_MODEL2_init [function] [call site] 00595
8 SIMPLE_MODEL2_init [function] [call site] 00596
8 SIMPLE_MODEL256_init [function] [call site] 00597
7 RC_SetInput [function] [call site] 00598
7 RC_StartDecode [function] [call site] 00599
7 realloc [call site] 00600
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00601
8 RC_GetFreq [function] [call site] 00602
8 RC_Decode [function] [call site] 00603
8 SIMPLE_MODEL256_normalize [function] [call site] 00604
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00605
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00606
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00607
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00608
7 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00609
7 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00610
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00611
7 fqz_update_ctx [function] [call site] 00612
7 realloc [call site] 00613
7 realloc [call site] 00614
7 RC_FinishDecode [function] [call site] 00615
7 fqz_destroy_models [function] [call site] 00616
8 htscodecs_tls_free [function] [call site] 00617
7 fqz_free_parameters [function] [call site] 00618
7 fqz_destroy_models [function] [call site] 00619
7 fqz_free_parameters [function] [call site] 00620
5 rans_uncompress_4x16 [function] [call site] 00621
6 rans_uncompress_to_4x16 [function] [call site] 00622
7 var_get_u32 [function] [call site] 00623
7 var_get_u32 [function] [call site] 00624
7 rans_uncompress_to_4x16 [function] [call site] 00625
8 unstripe [function] [call site] 00626
8 var_get_u32 [function] [call site] 00627
8 hts_unpack_meta [function] [call site] 00628
8 var_get_u32 [function] [call site] 00629
8 var_get_u32 [function] [call site] 00630
8 var_get_u32 [function] [call site] 00631
8 var_get_u32 [function] [call site] 00632
8 rans_dec_func [function] [call site] 00633
9 __get_cpuid_max [function] [call site] 00634
9 rans_uncompress_O1_32x16_avx512 [function] [call site] 00635
10 htscodecs_tls_alloc [function] [call site] 00636
10 var_get_u32 [function] [call site] 00637
10 var_get_u32 [function] [call site] 00638
10 rans_uncompress_O0_4x16 [function] [call site] 00639
11 decode_freq [function] [call site] 00640
12 decode_alphabet [function] [call site] 00641
12 var_get_u32 [function] [call site] 00642
11 RansDecInit [function] [call site] 00643
11 RansDecInit [function] [call site] 00644
11 RansDecInit [function] [call site] 00645
11 RansDecInit [function] [call site] 00646
11 RansDecGet [function] [call site] 00647
11 RansDecGet [function] [call site] 00648
11 RansDecGet [function] [call site] 00649
11 RansDecGet [function] [call site] 00650
11 RansDecRenorm [function] [call site] 00651
11 RansDecRenorm [function] [call site] 00652
11 RansDecRenorm [function] [call site] 00653
11 RansDecRenorm [function] [call site] 00654
11 RansDecGet [function] [call site] 00655
11 RansDecRenormSafe [function] [call site] 00656
10 decode_freq1 [function] [call site] 00657
11 decode_alphabet [function] [call site] 00658
11 decode_freq_d [function] [call site] 00659
12 var_get_u32 [function] [call site] 00660
11 normalise_freq_shift [function] [call site] 00661
10 RansDecInit [function] [call site] 00662
10 transpose_and_copy [function] [call site] 00663
11 rot32_simd [function] [call site] 00664
12 _mm256_set_m128ix [function] [call site] 00665
12 _mm256_set_m128ix [function] [call site] 00666
12 _mm256_set_m128ix [function] [call site] 00667
12 _mm256_set_m128ix [function] [call site] 00668
10 RansDecRenormSafe [function] [call site] 00669
10 RansDecRenormSafe [function] [call site] 00670
10 transpose_and_copy [function] [call site] 00671
10 RansDecRenormSafe [function] [call site] 00672
10 RansDecRenormSafe [function] [call site] 00673
10 htscodecs_tls_free [function] [call site] 00674
10 htscodecs_tls_free [function] [call site] 00675
9 rans_uncompress_O1_32x16_avx2 [function] [call site] 00676
10 htscodecs_tls_alloc [function] [call site] 00677
10 var_get_u32 [function] [call site] 00678
10 var_get_u32 [function] [call site] 00679
10 rans_uncompress_O0_4x16 [function] [call site] 00680
10 decode_freq1 [function] [call site] 00681
10 RansDecInit [function] [call site] 00682
10 transpose_and_copy [function] [call site] 00683
11 rot32_simd [function] [call site] 00684
10 RansDecRenormSafe [function] [call site] 00685
10 RansDecRenormSafe [function] [call site] 00686
10 transpose_and_copy [function] [call site] 00687
10 RansDecRenormSafe [function] [call site] 00688
10 RansDecRenormSafe [function] [call site] 00689
10 htscodecs_tls_free [function] [call site] 00690
10 htscodecs_tls_free [function] [call site] 00691
9 rans_uncompress_O1_32x16_sse4 [function] [call site] 00692
10 htscodecs_tls_alloc [function] [call site] 00693
10 var_get_u32 [function] [call site] 00694
10 var_get_u32 [function] [call site] 00695
10 rans_uncompress_O0_4x16 [function] [call site] 00696
10 decode_freq1 [function] [call site] 00697
10 RansDecInit [function] [call site] 00698
10 _mm_i32gather_epi32x [function] [call site] 00699
10 _mm_i32gather_epi32x [function] [call site] 00700
10 _mm_i32gather_epi32x [function] [call site] 00701
10 _mm_i32gather_epi32x [function] [call site] 00702
10 _mm_i32gather_epi32x [function] [call site] 00703
10 _mm_i32gather_epi32x [function] [call site] 00704
10 _mm_i32gather_epi32x [function] [call site] 00705
10 _mm_i32gather_epi32x [function] [call site] 00706
10 transpose_and_copy [function] [call site] 00707
10 RansDecRenormSafe [function] [call site] 00708
10 RansDecRenormSafe [function] [call site] 00709
10 _mm_i32gather_epi32x [function] [call site] 00710
10 _mm_i32gather_epi32x [function] [call site] 00711
10 _mm_i32gather_epi32x [function] [call site] 00712
10 _mm_i32gather_epi32x [function] [call site] 00713
10 _mm_i32gather_epi32x [function] [call site] 00714
10 _mm_i32gather_epi32x [function] [call site] 00715
10 _mm_i32gather_epi32x [function] [call site] 00716
10 _mm_i32gather_epi32x [function] [call site] 00717
10 transpose_and_copy [function] [call site] 00718
10 RansDecRenormSafe [function] [call site] 00719
10 RansDecRenormSafe [function] [call site] 00720
10 htscodecs_tls_free [function] [call site] 00721
10 htscodecs_tls_free [function] [call site] 00722
9 rans_uncompress_O1_32x16 [function] [call site] 00723
10 htscodecs_tls_alloc [function] [call site] 00724
10 var_get_u32 [function] [call site] 00725
10 var_get_u32 [function] [call site] 00726
10 rans_uncompress_O0_4x16 [function] [call site] 00727
10 decode_freq1 [function] [call site] 00728
10 RansDecInit [function] [call site] 00729
10 RansDecRenorm [function] [call site] 00730
10 RansDecRenorm [function] [call site] 00731
10 RansDecRenorm [function] [call site] 00732
10 RansDecRenorm [function] [call site] 00733
10 RansDecRenormSafe [function] [call site] 00734
10 RansDecRenormSafe [function] [call site] 00735
10 RansDecRenormSafe [function] [call site] 00736
10 RansDecRenormSafe [function] [call site] 00737
10 RansDecRenormSafe [function] [call site] 00738
10 RansDecRenorm [function] [call site] 00739
10 RansDecRenorm [function] [call site] 00740
10 RansDecRenorm [function] [call site] 00741
10 RansDecRenorm [function] [call site] 00742
10 RansDecRenormSafe [function] [call site] 00743
10 RansDecRenormSafe [function] [call site] 00744
10 RansDecRenormSafe [function] [call site] 00745
10 RansDecRenormSafe [function] [call site] 00746
10 RansDecRenormSafe [function] [call site] 00747
10 htscodecs_tls_free [function] [call site] 00748
10 htscodecs_tls_free [function] [call site] 00749
9 rans_uncompress_O0_32x16_avx512 [function] [call site] 00750
10 decode_freq [function] [call site] 00751
10 normalise_freq_shift [function] [call site] 00752
10 rans_F_to_s3 [function] [call site] 00753
10 RansDecInit [function] [call site] 00754
9 rans_uncompress_O0_32x16_avx2 [function] [call site] 00755
10 decode_freq [function] [call site] 00756
10 normalise_freq_shift [function] [call site] 00757
10 rans_F_to_s3 [function] [call site] 00758
10 RansDecInit [function] [call site] 00759
9 rans_uncompress_O0_32x16_sse4 [function] [call site] 00760
10 decode_freq [function] [call site] 00761
10 rans_F_to_s3 [function] [call site] 00762
10 RansDecInit [function] [call site] 00763
10 _mm_i32gather_epi32x [function] [call site] 00764
10 _mm_i32gather_epi32x [function] [call site] 00765
10 _mm_i32gather_epi32x [function] [call site] 00766
10 _mm_i32gather_epi32x [function] [call site] 00767
10 _mm_i32gather_epi32x [function] [call site] 00768
10 _mm_i32gather_epi32x [function] [call site] 00769
10 _mm_i32gather_epi32x [function] [call site] 00770
10 _mm_i32gather_epi32x [function] [call site] 00771
9 rans_uncompress_O0_32x16 [function] [call site] 00772
10 decode_freq [function] [call site] 00773
10 normalise_freq_shift [function] [call site] 00774
10 rans_F_to_s3 [function] [call site] 00775
10 RansDecRenorm [function] [call site] 00776
10 RansDecRenorm [function] [call site] 00777
10 RansDecRenorm [function] [call site] 00778
10 RansDecRenorm [function] [call site] 00779
10 RansDecRenorm [function] [call site] 00780
10 RansDecRenorm [function] [call site] 00781
10 RansDecRenorm [function] [call site] 00782
10 RansDecRenorm [function] [call site] 00783
10 RansDecRenormSafe [function] [call site] 00784
10 RansDecRenormSafe [function] [call site] 00785
10 RansDecRenormSafe [function] [call site] 00786
10 RansDecRenormSafe [function] [call site] 00787
8 rans_dec_func [function] [call site] 00788
8 hts_rle_decode [function] [call site] 00789
9 var_get_u32 [function] [call site] 00790
8 hts_unpack [function] [call site] 00791
5 arith_uncompress_to [function] [call site] 00792
6 var_get_u32 [function] [call site] 00793
6 var_get_u32 [function] [call site] 00794
6 arith_uncompress_to [function] [call site] 00795
7 unstripe [function] [call site] 00796
7 var_get_u32 [function] [call site] 00797
7 hts_unpack_meta [function] [call site] 00798
7 var_get_u32 [function] [call site] 00799
7 BZ2_bzBuffToBuffDecompress [call site] 00800
7 arith_uncompress_O1_RLE [function] [call site] 00801
8 htscodecs_tls_alloc [function] [call site] 00802
8 SIMPLE_MODEL256_init [function] [call site] 00803
8 htscodecs_tls_alloc [function] [call site] 00804
8 htscodecs_tls_free [function] [call site] 00805
8 SIMPLE_MODEL258_init [function] [call site] 00806
8 RC_SetInput [function] [call site] 00807
8 RC_StartDecode [function] [call site] 00808
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00809
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00810
8 RC_FinishDecode [function] [call site] 00811
8 htscodecs_tls_free [function] [call site] 00812
8 htscodecs_tls_free [function] [call site] 00813
7 arith_uncompress_O0_RLE [function] [call site] 00814
8 SIMPLE_MODEL256_init [function] [call site] 00815
8 htscodecs_tls_alloc [function] [call site] 00816
8 SIMPLE_MODEL258_init [function] [call site] 00817
8 RC_SetInput [function] [call site] 00818
8 RC_StartDecode [function] [call site] 00819
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00820
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00821
8 RC_FinishDecode [function] [call site] 00822
8 htscodecs_tls_free [function] [call site] 00823
7 arith_uncompress_O1 [function] [call site] 00824
8 htscodecs_tls_alloc [function] [call site] 00825
8 SIMPLE_MODEL256_init [function] [call site] 00826
8 RC_SetInput [function] [call site] 00827
8 RC_StartDecode [function] [call site] 00828
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00829
8 RC_FinishDecode [function] [call site] 00830
8 htscodecs_tls_free [function] [call site] 00831
7 arith_uncompress_O0 [function] [call site] 00832
8 SIMPLE_MODEL256_init [function] [call site] 00833
8 RC_SetInput [function] [call site] 00834
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00835
8 RC_FinishDecode [function] [call site] 00836
7 hts_unpack [function] [call site] 00837
5 tok3_decode_names [function] [call site] 00838
6 create_context [function] [call site] 00839
7 htscodecs_tls_alloc [function] [call site] 00840
6 uncompressed_size [function] [call site] 00841
7 var_get_u32 [function] [call site] 00842
7 var_get_u32 [function] [call site] 00843
6 uncompress [function] [call site] 00844
7 var_get_u32 [function] [call site] 00845
7 arith_decode [function] [call site] 00846
8 var_get_u32 [function] [call site] 00847
8 arith_uncompress_to [function] [call site] 00848
7 rans_decode [function] [call site] 00849
8 var_get_u32 [function] [call site] 00850
8 rans_uncompress_to_4x16 [function] [call site] 00851
6 decode_name [function] [call site] 00852
7 decode_token_type [function] [call site] 00853
7 decode_token_int [function] [call site] 00854
7 strlen [call site] 00855
7 strcpy [call site] 00856
7 strlen [call site] 00857
7 decode_token_type [function] [call site] 00858
7 decode_token_char [function] [call site] 00859
7 decode_token_alpha [function] [call site] 00860
7 decode_token_int1 [function] [call site] 00861
7 decode_token_int [function] [call site] 00862
7 append_uint32_fixed [function] [call site] 00863
7 decode_token_int1 [function] [call site] 00864
7 append_uint32_fixed [function] [call site] 00865
7 decode_token_int [function] [call site] 00866
7 append_uint32_var [function] [call site] 00867
7 decode_token_int1 [function] [call site] 00868
7 append_uint32_var [function] [call site] 00869
7 append_uint32_var [function] [call site] 00870
7 append_uint32_fixed [function] [call site] 00871
7 realloc [call site] 00872
6 free_context [function] [call site] 00873
7 pool_destroy [function] [call site] 00874
7 htscodecs_tls_free [function] [call site] 00875
6 free_context [function] [call site] 00876
4 cram_free_container [function] [call site] 00877
4 cram_free_block [function] [call site] 00878
4 int32_get_blk [function] [call site] 00879
4 cram_free_container [function] [call site] 00880
4 cram_free_block [function] [call site] 00881
4 cram_free_container [function] [call site] 00882
4 cram_free_block [function] [call site] 00883
4 cram_free_block [function] [call site] 00884
4 cram_read_block [function] [call site] 00885
4 cram_free_container [function] [call site] 00886
4 cram_free_block [function] [call site] 00887
4 cram_free_container [function] [call site] 00888
4 hread [function] [call site] 00889
4 cram_free_container [function] [call site] 00890
4 cram_free_container [function] [call site] 00891
4 sam_hdr_init [function] [call site] 00892
5 calloc [call site] 00893
4 sam_hdr_add_lines [function] [call site] 00894
5 sam_hdr_fill_hrecs [function] [call site] 00895
6 sam_hrecs_new [function] [call site] 00896
7 calloc [call site] 00897
7 kh_init_sam_hrecs_t [function] [call site] 00898
8 calloc [call site] 00899
7 kh_init_m_s2i [function] [call site] 00900
8 calloc [call site] 00901
7 kh_init_m_s2i [function] [call site] 00902
7 kh_init_m_s2i [function] [call site] 00903
7 pool_create [function] [call site] 00904
8 next_power_2 [function] [call site] 00905
7 pool_create [function] [call site] 00906
7 string_pool_create [function] [call site] 00907
7 sam_hrecs_init_type_order [function] [call site] 00908
8 calloc [call site] 00909
7 kh_destroy_sam_hrecs_t [function] [call site] 00910
7 pool_destroy [function] [call site] 00911
7 pool_destroy [function] [call site] 00912
7 string_pool_destroy [function] [call site] 00913
6 sam_hrecs_refs_from_targets_array [function] [call site] 00914
7 hts_log [function] [call site] 00915
7 realloc [call site] 00916
7 string_dup [function] [call site] 00917
8 string_ndup [function] [call site] 00918
9 string_alloc [function] [call site] 00919
10 new_string_pool [function] [call site] 00920
11 realloc [call site] 00921
7 kh_get_s2i [function] [call site] 00922
8 __ac_X31_hash_string [function] [call site] 00923
8 strcmp [call site] 00924
7 kh_put_m_s2i [function] [call site] 00925
8 kh_resize_m_s2i [function] [call site] 00926
9 __ac_X31_hash_string [function] [call site] 00927
7 hts_log [function] [call site] 00928
7 __errno_location [call site] 00929
7 hts_log [function] [call site] 00930
7 kh_get_m_s2i [function] [call site] 00931
7 kh_del_m_s2i [function] [call site] 00932
6 sam_hrecs_free [function] [call site] 00933
7 kh_destroy_sam_hrecs_t [function] [call site] 00934
7 kh_destroy_m_s2i [function] [call site] 00935
7 kh_destroy_m_s2i [function] [call site] 00936
7 kh_destroy_m_s2i [function] [call site] 00937
7 pool_destroy [function] [call site] 00938
7 pool_destroy [function] [call site] 00939
7 string_pool_destroy [function] [call site] 00940
6 sam_hrecs_parse_lines [function] [call site] 00941
7 strlen [call site] 00942
7 sam_hrecs_error [function] [call site] 00943
8 hts_log [function] [call site] 00944
7 sam_hrecs_error [function] [call site] 00945
7 isalpha_c [function] [call site] 00946
8 __ctype_b_loc [call site] 00947
7 sam_hrecs_error [function] [call site] 00948
7 TYPEKEY [function] [call site] 00949
7 pool_alloc [function] [call site] 00950
8 new_pool [function] [call site] 00951
9 realloc [call site] 00952
7 kh_put_sam_hrecs_t [function] [call site] 00953
8 kh_resize_sam_hrecs_t [function] [call site] 00954
7 sam_hrecs_global_list_add [function] [call site] 00955
8 TYPEKEY [function] [call site] 00956
7 __assert_fail [call site] 00957
7 TYPEKEY [function] [call site] 00958
7 sam_hrecs_error [function] [call site] 00959
7 pool_alloc [function] [call site] 00960
7 string_ndup [function] [call site] 00961
7 sam_hrecs_error [function] [call site] 00962
7 sam_hrecs_error [function] [call site] 00963
7 pool_alloc [function] [call site] 00964
7 string_ndup [function] [call site] 00965
7 sam_hrecs_update_hashes [function] [call site] 00966
8 TYPEKEY [function] [call site] 00967
8 __assert_fail [call site] 00968
8 strtoll [call site] 00969
8 hts_log [function] [call site] 00970
8 kh_get_m_s2i [function] [call site] 00971
8 sam_hrecs_update [function] [call site] 00972
9 sam_hrecs_vupdate [function] [call site] 00973
10 sam_hrecs_find_key [function] [call site] 00974
10 pool_alloc [function] [call site] 00975
10 strlen [call site] 00976
10 string_alloc [function] [call site] 00977
10 snprintf [call site] 00978
8 sam_hrecs_add_ref_altnames [function] [call site] 00979
9 kstrtok [function] [call site] 00980
9 string_ndup [function] [call site] 00981
9 kh_put_m_s2i [function] [call site] 00982
9 hts_log [function] [call site] 00983
8 strcmp [call site] 00984
8 sam_hrecs_add_ref_altnames [function] [call site] 00985
8 strcmp [call site] 00986
8 hts_log [function] [call site] 00987
8 realloc [call site] 00988
8 kh_put_m_s2i [function] [call site] 00989
8 sam_hrecs_add_ref_altnames [function] [call site] 00990
8 TYPEKEY [function] [call site] 00991
8 sam_hrecs_find_key [function] [call site] 00992
8 hts_log [function] [call site] 00993
8 __assert_fail [call site] 00994
8 kh_get_m_s2i [function] [call site] 00995
8 __assert_fail [call site] 00996
8 hts_log [function] [call site] 00997
8 realloc [call site] 00998
8 kh_put_m_s2i [function] [call site] 00999
8 TYPEKEY [function] [call site] 01000
8 realloc [call site] 01001
8 __assert_fail [call site] 01002
8 hts_log [function] [call site] 01003
8 kh_get_m_s2i [function] [call site] 01004
8 kh_put_m_s2i [function] [call site] 01005
8 realloc [call site] 01006
6 sam_hrecs_free [function] [call site] 01007
6 add_stub_ref_sq_lines [function] [call site] 01008
7 snprintf [call site] 01009
7 sam_hrecs_add [function] [call site] 01010
8 sam_hrecs_vadd [function] [call site] 01011
9 TYPEKEY [function] [call site] 01012
9 strncmp [call site] 01013
9 sam_hrecs_find_type_id [function] [call site] 01014
10 kh_get_m_s2i [function] [call site] 01015
10 kh_get_m_s2i [function] [call site] 01016
10 kh_get_m_s2i [function] [call site] 01017
10 TYPEKEY [function] [call site] 01018
9 sam_hrecs_vupdate [function] [call site] 01019
9 pool_alloc [function] [call site] 01020
9 kh_put_sam_hrecs_t [function] [call site] 01021
9 __assert_fail [call site] 01022
9 sam_hrecs_global_list_add [function] [call site] 01023
9 __assert_fail [call site] 01024
9 __assert_fail [call site] 01025
9 __assert_fail [call site] 01026
9 __assert_fail [call site] 01027
9 strncmp [call site] 01028
9 pool_alloc [function] [call site] 01029
9 strncmp [call site] 01030
9 string_alloc [function] [call site] 01031
9 snprintf [call site] 01032
9 strlen [call site] 01033
9 string_ndup [function] [call site] 01034
9 strncmp [call site] 01035
9 pool_alloc [function] [call site] 01036
9 strncmp [call site] 01037
9 string_alloc [function] [call site] 01038
9 snprintf [call site] 01039
9 strlen [call site] 01040
9 string_ndup [function] [call site] 01041
9 TYPEKEY [function] [call site] 01042
9 sam_hrecs_update_hashes [function] [call site] 01043
9 strncmp [call site] 01044
7 hts_log [function] [call site] 01045
6 sam_hrecs_free [function] [call site] 01046
6 rebuild_target_arrays [function] [call site] 01047
7 sam_hdr_update_target_arrays [function] [call site] 01048
8 realloc [call site] 01049
8 strcmp [call site] 01050
8 strdup [call site] 01051
8 kh_get_s2i [function] [call site] 01052
8 kh_del_s2i [function] [call site] 01053
8 kh_init_s2i [function] [call site] 01054
8 kh_put_s2i [function] [call site] 01055
9 kh_resize_s2i [function] [call site] 01056
8 kh_get_s2i [function] [call site] 01057
8 kh_del_s2i [function] [call site] 01058
5 sam_hrecs_parse_lines [function] [call site] 01059
5 rebuild_target_arrays [function] [call site] 01060
5 redact_header_text [function] [call site] 01061
6 __assert_fail [call site] 01062
4 sam_hdr_destroy [function] [call site] 01063
5 sam_hrecs_free [function] [call site] 01064
3 cram_free_file_def [function] [call site] 01065
3 calloc [call site] 01066
3 strncpy [call site] 01067
3 cram_init_tables [function] [call site] 01068
3 strrchr [call site] 01069
3 refs_create [function] [call site] 01070
4 calloc [call site] 01071
4 string_pool_create [function] [call site] 01072
4 kh_init_refs [function] [call site] 01073
4 pthread_mutex_init [call site] 01074
4 refs_free [function] [call site] 01075
5 string_pool_destroy [function] [call site] 01076
5 ref_entry_free_seq [function] [call site] 01077
6 mfclose [function] [call site] 01078
7 mfflush [function] [call site] 01079
8 fwrite [call site] 01080
8 fflush [call site] 01081
8 fseek [call site] 01082
8 fwrite [call site] 01083
8 fileno [call site] 01084
7 fclose [call site] 01085
7 mfdestroy [function] [call site] 01086
5 kh_destroy_refs [function] [call site] 01087
5 bgzf_close [function] [call site] 01088
6 bgzf_flush [function] [call site] 01089
7 mt_queue [function] [call site] 01090
8 pthread_mutex_lock [call site] 01091
8 pool_alloc [function] [call site] 01092
8 pthread_mutex_unlock [call site] 01093
8 hts_tpool_dispatch3 [function] [call site] 01094
9 pthread_mutex_lock [call site] 01095
9 pthread_mutex_unlock [call site] 01096
9 __errno_location [call site] 01097
9 pthread_mutex_unlock [call site] 01098
9 wake_next_worker [function] [call site] 01099
10 pthread_mutex_lock [call site] 01100
10 __assert_fail [call site] 01101
10 pthread_cond_signal [call site] 01102
10 pthread_mutex_unlock [call site] 01103
9 pthread_mutex_unlock [call site] 01104
8 bgzf_encode_level0_func [function] [call site] 01105
9 u16_to_le [function] [call site] 01106
9 u16_to_le [function] [call site] 01107
9 u16_to_le [function] [call site] 01108
9 u32_to_le [function] [call site] 01109
9 u32_to_le [function] [call site] 01110
8 hts_tpool_dispatch3 [function] [call site] 01111
8 bgzf_encode_func [function] [call site] 01112
9 bgzf_compress [function] [call site] 01113
10 u16_to_le [function] [call site] 01114
10 u16_to_le [function] [call site] 01115
10 bgzf_zerr [function] [call site] 01116
10 hts_log [function] [call site] 01117
10 deflate [call site] 01118
10 bgzf_zerr [function] [call site] 01119
10 hts_log [function] [call site] 01120
10 deflateEnd [call site] 01121
10 bgzf_zerr [function] [call site] 01122
10 hts_log [function] [call site] 01123
10 packInt16 [function] [call site] 01124
10 crc32 [call site] 01125
10 packInt32 [function] [call site] 01126
10 packInt32 [function] [call site] 01127
8 job_cleanup [function] [call site] 01128
9 pthread_mutex_lock [call site] 01129
9 pool_free [function] [call site] 01130
9 pthread_mutex_unlock [call site] 01131
8 pthread_mutex_lock [call site] 01132
8 pthread_mutex_unlock [call site] 01133
7 mt_flush_queue [function] [call site] 01134
8 pthread_mutex_lock [call site] 01135
8 hts_tpool_process_is_shutdown [function] [call site] 01136
9 pthread_mutex_lock [call site] 01137
9 pthread_mutex_unlock [call site] 01138
8 pthread_mutex_unlock [call site] 01139
8 usleep [call site] 01140
8 pthread_mutex_lock [call site] 01141
8 pthread_mutex_unlock [call site] 01142
8 hts_tpool_process_flush [function] [call site] 01143
9 pthread_mutex_lock [call site] 01144
9 pthread_cond_signal [call site] 01145
9 pthread_cond_wait [call site] 01146
9 gettimeofday [call site] 01147
9 pthread_cond_timedwait [call site] 01148
9 gettimeofday [call site] 01149
9 pthread_cond_timedwait [call site] 01150
9 pthread_mutex_unlock [call site] 01151
7 pthread_mutex_lock [call site] 01152
7 pthread_mutex_unlock [call site] 01153
7 bgzf_index_add_block [function] [call site] 01154
8 realloc [call site] 01155
7 deflate_block [function] [call site] 01156
8 bgzf_compress [function] [call site] 01157
8 bgzf_gzip_compress [function] [call site] 01158
9 deflate [call site] 01159
9 bgzf_zerr [function] [call site] 01160
9 hts_log [function] [call site] 01161
9 hts_log [function] [call site] 01162
7 bgzf_zerr [function] [call site] 01163
7 hts_log [function] [call site] 01164
7 hwrite [function] [call site] 01165
8 hfile_set_blksize [function] [call site] 01166
9 realloc [call site] 01167
8 hwrite2 [function] [call site] 01168
9 flush_buffer [function] [call site] 01169
9 __errno_location [call site] 01170
8 hwrite2 [function] [call site] 01171
7 hts_log [function] [call site] 01172
6 bgzf_close_mt [function] [call site] 01173
7 mt_destroy [function] [call site] 01174
8 pthread_mutex_lock [call site] 01175
8 pthread_cond_signal [call site] 01176
8 hts_tpool_wake_dispatch [function] [call site] 01177
9 pthread_cond_signal [call site] 01178
9 pthread_mutex_unlock [call site] 01179
8 pthread_mutex_unlock [call site] 01180
8 hts_tpool_process_is_shutdown [function] [call site] 01181
8 hts_tpool_process_destroy [function] [call site] 01182
9 pthread_mutex_lock [call site] 01183
9 pthread_mutex_unlock [call site] 01184
9 hts_tpool_process_reset [function] [call site] 01185
10 pthread_mutex_lock [call site] 01186
10 pthread_mutex_unlock [call site] 01187
10 hts_tpool_delete_result [function] [call site] 01188
10 hts_tpool_process_flush [function] [call site] 01189
10 pthread_mutex_lock [call site] 01190
10 pthread_cond_signal [call site] 01191
10 pthread_mutex_unlock [call site] 01192
10 hts_tpool_delete_result [function] [call site] 01193
9 hts_tpool_process_detach_locked [function] [call site] 01194
9 hts_tpool_process_shutdown_locked [function] [call site] 01195
10 pthread_cond_broadcast [call site] 01196
10 pthread_cond_broadcast [call site] 01197
9 pthread_mutex_unlock [call site] 01198
9 pthread_cond_destroy [call site] 01199
9 pthread_cond_destroy [call site] 01200
9 pthread_cond_destroy [call site] 01201
9 pthread_mutex_unlock [call site] 01202
8 pthread_join [call site] 01203
8 pthread_mutex_destroy [call site] 01204
8 pthread_mutex_destroy [call site] 01205
8 pthread_mutex_destroy [call site] 01206
8 pthread_cond_destroy [call site] 01207
8 pool_free [function] [call site] 01208
8 hts_tpool_destroy [function] [call site] 01209
9 pthread_mutex_lock [call site] 01210
9 pthread_cond_signal [call site] 01211
9 pthread_join [call site] 01212
9 pthread_mutex_destroy [call site] 01213
9 pthread_cond_destroy [call site] 01214
8 pool_destroy [function] [call site] 01215
8 fflush [call site] 01216
6 deflate_block [function] [call site] 01217
6 bgzf_zerr [function] [call site] 01218
6 hts_log [function] [call site] 01219
6 bgzf_close_mt [function] [call site] 01220
6 hwrite [function] [call site] 01221
6 hflush [function] [call site] 01222
7 flush_buffer [function] [call site] 01223
7 __errno_location [call site] 01224
6 hts_log [function] [call site] 01225
6 bgzf_close_mt [function] [call site] 01226
6 inflateEnd [call site] 01227
6 deflateEnd [call site] 01228
6 bgzf_zerr [function] [call site] 01229
6 hts_log [function] [call site] 01230
6 hclose [function] [call site] 01231
7 writebuffer_is_nonempty [function] [call site] 01232
7 __errno_location [call site] 01233
7 hfile_destroy [function] [call site] 01234
7 __errno_location [call site] 01235
6 bgzf_index_destroy [function] [call site] 01236
6 free_cache [function] [call site] 01237
7 kh_destroy_cache [function] [call site] 01238
5 pthread_mutex_destroy [call site] 01239
3 cram_new_metrics [function] [call site] 01240
4 calloc [call site] 01241
3 kh_init_m_metrics [function] [call site] 01242
4 calloc [call site] 01243
3 refs_from_header [function] [call site] 01244
4 sam_hdr_fill_hrecs [function] [call site] 01245
4 realloc [call site] 01246
4 kh_get_refs [function] [call site] 01247
5 __ac_X31_hash_string [function] [call site] 01248
4 calloc [call site] 01249
4 string_dup [function] [call site] 01250
4 sam_hrecs_find_type_id [function] [call site] 01251
4 sam_hrecs_find_key [function] [call site] 01252
4 string_dup [function] [call site] 01253
4 kh_put_refs [function] [call site] 01254
5 kh_resize_refs [function] [call site] 01255
2 cram_set_option [function] [call site] 01256
3 cram_set_voption [function] [call site] 01257
4 __errno_location [call site] 01258
4 strdup [call site] 01259
4 refs_free [function] [call site] 01260
4 cram_seek_to_refpos [function] [call site] 01261
5 cram_index_query [function] [call site] 01262
5 cram_seek [function] [call site] 01263
6 cram_drain_rqueue [function] [call site] 01264
7 hts_tpool_process_empty [function] [call site] 01265
8 pthread_mutex_lock [call site] 01266
7 hts_tpool_next_result_wait [function] [call site] 01267
8 hts_tpool_next_result_locked [function] [call site] 01268
9 pthread_cond_signal [call site] 01269
9 wake_next_worker [function] [call site] 01270
8 pthread_mutex_unlock [call site] 01271
8 hts_tpool_process_destroy [function] [call site] 01272
8 pthread_cond_timedwait [call site] 01273
8 pthread_mutex_unlock [call site] 01274
7 hts_tpool_result_data [function] [call site] 01275
7 cram_free_container [function] [call site] 01276
7 cram_free_slice [function] [call site] 01277
7 hts_tpool_delete_result [function] [call site] 01278
7 cram_free_container [function] [call site] 01279
7 cram_free_slice [function] [call site] 01280
7 cram_free_container [function] [call site] 01281
6 hseek [function] [call site] 01282
6 hread [function] [call site] 01283
5 cram_seek [function] [call site] 01284
5 pthread_mutex_lock [call site] 01285
5 pthread_mutex_unlock [call site] 01286
5 cram_free_container [function] [call site] 01287
5 cram_free_container [function] [call site] 01288
5 pthread_mutex_unlock [call site] 01289
4 pthread_mutex_lock [call site] 01290
4 pthread_mutex_unlock [call site] 01291
4 pthread_mutex_lock [call site] 01292
4 pthread_mutex_unlock [call site] 01293
4 cram_load_reference [function] [call site] 01294
5 refs_load_fai [function] [call site] 01295
6 strlen [call site] 01296
6 refs_create [function] [call site] 01297
6 bgzf_close [function] [call site] 01298
6 strstr [call site] 01299
6 string_ndup [function] [call site] 01300
6 snprintf [call site] 01301
6 strcmp [call site] 01302
6 string_ndup [function] [call site] 01303
6 snprintf [call site] 01304
6 string_dup [function] [call site] 01305
6 sprintf [call site] 01306
6 bgzf_open_ref [function] [call site] 01307
7 hisremote [function] [call site] 01308
8 find_scheme_handler [function] [call site] 01309
7 snprintf [call site] 01310
7 access [call site] 01311
7 fai_build [function] [call site] 01312
8 fai_build3 [function] [call site] 01313
9 fai_build3_core [function] [call site] 01314
10 bgzf_open [function] [call site] 01315
11 strchr [call site] 01316
11 hopen [function] [call site] 01317
11 bgzf_read_init [function] [call site] 01318
11 hclose_abruptly [function] [call site] 01319
12 __errno_location [call site] 01320
12 hfile_destroy [function] [call site] 01321
12 __errno_location [call site] 01322
11 hopen [function] [call site] 01323
11 bgzf_write_init [function] [call site] 01324
11 __errno_location [call site] 01325
11 ed_is_big [function] [call site] 01326
10 hts_log [function] [call site] 01327
10 bgzf_index_build_init [function] [call site] 01328
11 bgzf_index_destroy [function] [call site] 01329
11 calloc [call site] 01330
10 hts_log [function] [call site] 01331
10 fai_build_core [function] [call site] 01332
11 calloc [call site] 01333
11 kh_init_s [function] [call site] 01334
12 calloc [call site] 01335
11 bgzf_getc [function] [call site] 01336
12 bgzf_read_block [function] [call site] 01337
13 hts_tpool_next_result_wait [function] [call site] 01338
13 hts_tpool_result_data [function] [call site] 01339
13 mt_destroy [function] [call site] 01340
13 hts_tpool_delete_result [function] [call site] 01341
13 hts_tpool_delete_result [function] [call site] 01342
13 hts_log [function] [call site] 01343
13 hts_tpool_delete_result [function] [call site] 01344
13 bgzf_index_add_block [function] [call site] 01345
13 pthread_mutex_lock [call site] 01346
13 pool_free [function] [call site] 01347
13 pthread_mutex_unlock [call site] 01348
13 hts_tpool_delete_result [function] [call site] 01349
13 bgzf_htell [function] [call site] 01350
14 pthread_mutex_lock [call site] 01351
14 htell [function] [call site] 01352
13 hread [function] [call site] 01353
13 __errno_location [call site] 01354
13 hts_log [function] [call site] 01355
13 inflate_gzip_block [function] [call site] 01356
14 hread [function] [call site] 01357
14 inflate [call site] 01358
14 bgzf_zerr [function] [call site] 01359
14 hts_log [function] [call site] 01360
14 hpeek [function] [call site] 01361
14 inflateReset [call site] 01362
14 bgzf_zerr [function] [call site] 01363
14 hts_log [function] [call site] 01364
14 hts_log [function] [call site] 01365
13 hts_log [function] [call site] 01366
13 load_block_from_cache [function] [call site] 01367
14 kh_get_cache [function] [call site] 01368
14 hseek [function] [call site] 01369
14 hts_log [function] [call site] 01370
14 exit [call site] 01371
13 hread [function] [call site] 01372
13 hts_log [function] [call site] 01373
13 check_header [function] [call site] 01374
14 unpackInt16 [function] [call site] 01375
14 unpackInt16 [function] [call site] 01376
13 hts_log [function] [call site] 01377
13 hread [function] [call site] 01378
13 calloc [call site] 01379
13 inflateInit2_ [call site] 01380
13 bgzf_zerr [function] [call site] 01381
13 hts_log [function] [call site] 01382
13 inflate_gzip_block [function] [call site] 01383
13 hts_log [function] [call site] 01384
13 unpackInt16 [function] [call site] 01385
13 hts_log [function] [call site] 01386
13 hread [function] [call site] 01387
13 hts_log [function] [call site] 01388
13 inflate_block [function] [call site] 01389
14 le_to_u32 [function] [call site] 01390
14 bgzf_uncompress [function] [call site] 01391
15 inflateInit2_ [call site] 01392
15 bgzf_zerr [function] [call site] 01393
15 hts_log [function] [call site] 01394
15 inflate [call site] 01395
15 bgzf_zerr [function] [call site] 01396
15 hts_log [function] [call site] 01397
15 inflateEnd [call site] 01398
15 bgzf_zerr [function] [call site] 01399
15 hts_log [function] [call site] 01400
15 bgzf_zerr [function] [call site] 01401
15 hts_log [function] [call site] 01402
15 crc32 [call site] 01403
15 hts_log [function] [call site] 01404
13 bgzf_zerr [function] [call site] 01405
13 hts_log [function] [call site] 01406
13 bgzf_htell [function] [call site] 01407
13 bgzf_index_add_block [function] [call site] 01408
13 cache_block [function] [call site] 01409
14 kh_del_cache [function] [call site] 01410
14 kh_put_cache [function] [call site] 01411
15 kh_resize_cache [function] [call site] 01412
12 bgzf_htell [function] [call site] 01413
11 hts_log [function] [call site] 01414
11 hts_log [function] [call site] 01415
11 bgzf_getc [function] [call site] 01416
11 hts_log [function] [call site] 01417
11 __ctype_b_loc [call site] 01418
11 fai_insert_index [function] [call site] 01419
12 hts_log [function] [call site] 01420
12 strdup [call site] 01421
12 kh_put_s [function] [call site] 01422
13 kh_resize_s [function] [call site] 01423
14 __ac_X31_hash_string [function] [call site] 01424
12 hts_log [function] [call site] 01425
12 realloc [call site] 01426
12 hts_log [function] [call site] 01427
11 __ctype_b_loc [call site] 01428
11 kputc [function] [call site] 01429
11 bgzf_getc [function] [call site] 01430
11 kputsn [function] [call site] 01431
11 hts_log [function] [call site] 01432
11 bgzf_getc [function] [call site] 01433
11 bgzf_utell [function] [call site] 01434
11 bgzf_getc [function] [call site] 01435
11 bgzf_utell [function] [call site] 01436
11 hts_log [function] [call site] 01437
11 __ctype_b_loc [call site] 01438
11 bgzf_getc [function] [call site] 01439
11 hts_log [function] [call site] 01440
11 bgzf_getc [function] [call site] 01441
11 bgzf_utell [function] [call site] 01442
11 hts_log [function] [call site] 01443
11 hts_log [function] [call site] 01444
11 __ctype_b_loc [call site] 01445
11 bgzf_getc [function] [call site] 01446
11 hts_log [function] [call site] 01447
11 hts_log [function] [call site] 01448
11 hts_log [function] [call site] 01449
11 fai_insert_index [function] [call site] 01450
11 fai_destroy [function] [call site] 01451
12 kh_destroy_s [function] [call site] 01452
12 bgzf_close [function] [call site] 01453
10 hts_log [function] [call site] 01454
10 ksprintf [function] [call site] 01455
10 ksprintf [function] [call site] 01456
10 bgzf_index_dump [function] [call site] 01457
11 hts_log [function] [call site] 01458
11 __errno_location [call site] 01459
11 get_name_suffix [function] [call site] 01460
12 strlen [call site] 01461
12 snprintf [call site] 01462
11 hopen [function] [call site] 01463
11 bgzf_index_dump_hfile [function] [call site] 01464
12 hts_log [function] [call site] 01465
12 __errno_location [call site] 01466
12 bgzf_flush [function] [call site] 01467
12 hwrite_uint64 [function] [call site] 01468
13 ed_is_big [function] [call site] 01469
13 hwrite [function] [call site] 01470
12 hwrite_uint64 [function] [call site] 01471
12 hwrite_uint64 [function] [call site] 01472
12 __errno_location [call site] 01473
12 hts_log [function] [call site] 01474
11 hclose [function] [call site] 01475
11 __errno_location [call site] 01476
11 hts_log [function] [call site] 01477
11 hclose_abruptly [function] [call site] 01478
10 hts_log [function] [call site] 01479
10 bgzf_close [function] [call site] 01480
10 __errno_location [call site] 01481
10 hts_log [function] [call site] 01482
10 hopen [function] [call site] 01483
10 __errno_location [call site] 01484
10 hts_log [function] [call site] 01485
10 fai_save [function] [call site] 01486
11 kh_get_s [function] [call site] 01487
11 __assert_fail [call site] 01488
11 snprintf [call site] 01489
11 snprintf [call site] 01490
11 hputs [function] [call site] 01491
12 strlen [call site] 01492
12 hputs2 [function] [call site] 01493
13 hwrite2 [function] [call site] 01494
11 hputs [function] [call site] 01495
10 __errno_location [call site] 01496
10 hts_log [function] [call site] 01497
10 hclose [function] [call site] 01498
10 __errno_location [call site] 01499
10 hts_log [function] [call site] 01500
10 fai_destroy [function] [call site] 01501
10 __errno_location [call site] 01502
10 bgzf_close [function] [call site] 01503
10 fai_destroy [function] [call site] 01504
10 __errno_location [call site] 01505
7 bgzf_open [function] [call site] 01506
7 perror [call site] 01507
7 bgzf_index_load [function] [call site] 01508
8 get_name_suffix [function] [call site] 01509
8 hopen [function] [call site] 01510
8 bgzf_index_load_hfile [function] [call site] 01511
9 calloc [call site] 01512
9 hread_uint64 [function] [call site] 01513
10 hread [function] [call site] 01514
10 ed_is_big [function] [call site] 01515
9 hread_uint64 [function] [call site] 01516
9 hread_uint64 [function] [call site] 01517
9 __errno_location [call site] 01518
9 hts_log [function] [call site] 01519
8 hclose [function] [call site] 01520
8 __errno_location [call site] 01521
8 hts_log [function] [call site] 01522
8 hclose_abruptly [function] [call site] 01523
7 hts_log [function] [call site] 01524
7 bgzf_close [function] [call site] 01525
6 hts_log [function] [call site] 01526
6 hopen [function] [call site] 01527
6 hts_log [function] [call site] 01528
6 perror [call site] 01529
6 hgets [function] [call site] 01530
7 __errno_location [call site] 01531
7 hgetln [function] [call site] 01532
8 hgetdelim [function] [call site] 01533
9 writebuffer_is_nonempty [function] [call site] 01534
9 __errno_location [call site] 01535
9 memchr [call site] 01536
9 refill_buffer [function] [call site] 01537
6 isspace_c [function] [call site] 01538
6 string_dup [function] [call site] 01539
6 isspace_c [function] [call site] 01540
6 strtoll [call site] 01541
6 isspace_c [function] [call site] 01542
6 strtoll [call site] 01543
6 isspace_c [function] [call site] 01544
6 strtol [call site] 01545
6 isspace_c [function] [call site] 01546
6 strtol [call site] 01547
6 kh_put_refs [function] [call site] 01548
6 realloc [call site] 01549
6 hclose [function] [call site] 01550
6 hclose_abruptly [function] [call site] 01551
6 refs_free [function] [call site] 01552
5 sanitise_SQ_lines [function] [call site] 01553
6 kh_get_refs [function] [call site] 01554
6 strcmp [call site] 01555
6 hts_log [function] [call site] 01556
5 refs_free [function] [call site] 01557
5 refs_create [function] [call site] 01558
5 refs_from_header [function] [call site] 01559
5 refs2id [function] [call site] 01560
6 calloc [call site] 01561
6 kh_get_refs [function] [call site] 01562
6 hts_log [function] [call site] 01563
4 __isoc99_sscanf [call site] 01564
4 hts_log [function] [call site] 01565
4 hts_log [function] [call site] 01566
4 __errno_location [call site] 01567
4 hts_log [function] [call site] 01568
4 cram_init_tables [function] [call site] 01569
4 hts_tpool_init [function] [call site] 01570
5 pthread_mutexattr_init [call site] 01571
5 pthread_mutexattr_settype [call site] 01572
5 pthread_mutex_init [call site] 01573
5 pthread_mutexattr_destroy [call site] 01574
5 pthread_mutex_lock [call site] 01575
5 pthread_attr_init [call site] 01576
5 pthread_attr_getstacksize [call site] 01577
5 pthread_attr_setstacksize [call site] 01578
5 pthread_create [call site] 01579
5 tpool_worker [function] [call site] 01580
6 pthread_mutex_lock [call site] 01581
6 pthread_cond_wait [call site] 01582
6 pthread_cond_broadcast [call site] 01583
6 hts_tpool_add_result [function] [call site] 01584
7 pthread_mutex_lock [call site] 01585
7 pthread_cond_signal [call site] 01586
7 pthread_mutex_unlock [call site] 01587
7 hts_tpool_process_shutdown [function] [call site] 01588
8 pthread_mutex_lock [call site] 01589
8 hts_tpool_process_shutdown_locked [function] [call site] 01590
7 pthread_cond_broadcast [call site] 01591
6 pthread_mutex_lock [call site] 01592
6 hts_tpool_process_destroy [function] [call site] 01593
6 pthread_mutex_unlock [call site] 01594
6 hts_tpool_process_shutdown_locked [function] [call site] 01595
6 pthread_mutex_unlock [call site] 01596
5 pthread_mutex_unlock [call site] 01597
5 pthread_attr_destroy [call site] 01598
5 __errno_location [call site] 01599
5 __errno_location [call site] 01600
5 hts_log [function] [call site] 01601
5 pthread_mutex_unlock [call site] 01602
5 pthread_join [call site] 01603
5 pthread_cond_destroy [call site] 01604
5 pthread_mutex_destroy [call site] 01605
5 pthread_attr_destroy [call site] 01606
5 __errno_location [call site] 01607
4 hts_tpool_process_init [function] [call site] 01608
5 pthread_cond_init [call site] 01609
5 pthread_cond_init [call site] 01610
5 pthread_cond_init [call site] 01611
5 hts_tpool_process_attach [function] [call site] 01612
6 __assert_fail [call site] 01613
4 pthread_mutex_init [call site] 01614
4 pthread_mutex_init [call site] 01615
4 pthread_mutex_init [call site] 01616
4 pthread_mutex_init [call site] 01617
4 hts_tpool_size [function] [call site] 01618
4 hts_tpool_process_init [function] [call site] 01619
4 pthread_mutex_init [call site] 01620
4 pthread_mutex_init [call site] 01621
4 pthread_mutex_init [call site] 01622
4 pthread_mutex_init [call site] 01623
4 hts_log [function] [call site] 01624
4 __errno_location [call site] 01625
2 bgzf_hopen [function] [call site] 01626
2 __errno_location [call site] 01627
2 hts_process_opts [function] [call site] 01628
3 hts_parse_opt_list [function] [call site] 01629
4 strncpy [call site] 01630
4 hts_opt_add [function] [call site] 01631
5 strdup [call site] 01632
5 strchr [call site] 01633
5 strcmp [call site] 01634
5 atoi [call site] 01635
5 strcmp [call site] 01636
5 atoi [call site] 01637
5 strcmp [call site] 01638
5 strcmp [call site] 01639
5 strcmp [call site] 01640
5 atoi [call site] 01641
5 strcmp [call site] 01642
5 atoi [call site] 01643
5 strcmp [call site] 01644
5 strcmp [call site] 01645
5 atoi [call site] 01646
5 strcmp [call site] 01647
5 strcmp [call site] 01648
5 atoi [call site] 01649
5 strcmp [call site] 01650
5 strcmp [call site] 01651
5 atoi [call site] 01652
5 strcmp [call site] 01653
5 strcmp [call site] 01654
5 atoi [call site] 01655
5 strcmp [call site] 01656
5 strcmp [call site] 01657
5 atoi [call site] 01658
5 strcmp [call site] 01659
5 strcmp [call site] 01660
5 atoi [call site] 01661
5 strcmp [call site] 01662
5 strcmp [call site] 01663
5 strcmp [call site] 01664
5 strcmp [call site] 01665
5 atoi [call site] 01666
5 strcmp [call site] 01667
5 atoi [call site] 01668
5 strcmp [call site] 01669
5 strcmp [call site] 01670
5 atoi [call site] 01671
5 strcmp [call site] 01672
5 strcmp [call site] 01673
5 strcmp [call site] 01674
5 strcmp [call site] 01675
5 strcmp [call site] 01676
5 strcmp [call site] 01677
5 strcmp [call site] 01678
5 strcmp [call site] 01679
5 strcmp [call site] 01680
5 strcmp [call site] 01681
5 strcmp [call site] 01682
5 strcmp [call site] 01683
5 strcmp [call site] 01684
5 strcmp [call site] 01685
5 strcmp [call site] 01686
5 strcmp [call site] 01687
5 hts_log [function] [call site] 01688
5 strcmp [call site] 01689
5 strcmp [call site] 01690
5 strtol [call site] 01691
5 strcmp [call site] 01692
5 strtol [call site] 01693
5 strcmp [call site] 01694
5 strcmp [call site] 01695
5 atoi [call site] 01696
5 strcmp [call site] 01697
5 strcmp [call site] 01698
5 strcmp [call site] 01699
5 strcmp [call site] 01700
5 strcmp [call site] 01701
5 strtol [call site] 01702
5 strcmp [call site] 01703
5 strcmp [call site] 01704
5 strcmp [call site] 01705
5 strcmp [call site] 01706
5 strcmp [call site] 01707
5 strcmp [call site] 01708
5 strcmp [call site] 01709
5 strcmp [call site] 01710
5 strcmp [call site] 01711
5 strcmp [call site] 01712
5 hts_log [function] [call site] 01713
3 hts_opt_apply [function] [call site] 01714
4 hts_set_opt [function] [call site] 01715
5 hts_set_threads [function] [call site] 01716
6 sam_set_threads [function] [call site] 01717
7 hts_tpool_init [function] [call site] 01718
7 sam_set_thread_pool [function] [call site] 01719
8 sam_state_create [function] [call site] 01720
9 calloc [call site] 01721
8 pthread_mutex_init [call site] 01722
8 pthread_mutex_init [call site] 01723
8 pthread_cond_init [call site] 01724
8 hts_tpool_size [function] [call site] 01725
8 hts_tpool_process_init [function] [call site] 01726
8 sam_state_destroy [function] [call site] 01727
9 pthread_mutex_lock [call site] 01728
9 pthread_cond_signal [call site] 01729
9 hts_tpool_wake_dispatch [function] [call site] 01730
9 hts_tpool_wake_dispatch [function] [call site] 01731
9 pthread_mutex_unlock [call site] 01732
9 usleep [call site] 01733
9 pthread_mutex_lock [call site] 01734
9 pthread_mutex_unlock [call site] 01735
9 hts_tpool_dispatch [function] [call site] 01736
10 hts_tpool_dispatch3 [function] [call site] 01737
9 sam_format_worker [function] [call site] 01738
10 pthread_mutex_lock [call site] 01739
10 pthread_mutex_unlock [call site] 01740
10 calloc [call site] 01741
10 sam_state_err [function] [call site] 01742
11 pthread_mutex_lock [call site] 01743
11 pthread_mutex_unlock [call site] 01744
10 sam_format1_append [function] [call site] 01745
11 kputsn_ [function] [call site] 01746
12 ks_resize [function] [call site] 01747
11 kputc_ [function] [call site] 01748
12 ks_resize [function] [call site] 01749
11 kputw [function] [call site] 01750
12 ks_resize [function] [call site] 01751
12 kputuw [function] [call site] 01752
13 ks_resize [function] [call site] 01753
13 ks_resize [function] [call site] 01754
11 kputs [function] [call site] 01755
11 kputc_ [function] [call site] 01756
11 kputsn_ [function] [call site] 01757
11 kputll [function] [call site] 01758
12 ks_resize [function] [call site] 01759
11 kputw [function] [call site] 01760
11 kputw [function] [call site] 01761
11 kputc_ [function] [call site] 01762
11 kputc_ [function] [call site] 01763
11 kputc_ [function] [call site] 01764
11 kputsn_ [function] [call site] 01765
11 kputsn_ [function] [call site] 01766
11 kputs [function] [call site] 01767
11 kputc_ [function] [call site] 01768
11 kputll [function] [call site] 01769
11 kputll [function] [call site] 01770
11 ks_resize [function] [call site] 01771
11 nibble2base [function] [call site] 01772
11 kputsn_ [function] [call site] 01773
11 kputc_ [function] [call site] 01774
11 sam_format_aux1 [function] [call site] 01775
12 kputsn_ [function] [call site] 01776
12 kputc_ [function] [call site] 01777
12 kputsn_ [function] [call site] 01778
12 kputw [function] [call site] 01779
12 kputsn_ [function] [call site] 01780
12 kputw [function] [call site] 01781
12 kputsn_ [function] [call site] 01782
12 le_to_u16 [function] [call site] 01783
12 kputuw [function] [call site] 01784
12 kputsn_ [function] [call site] 01785
12 le_to_i16 [function] [call site] 01786
13 le_to_u16 [function] [call site] 01787
12 kputw [function] [call site] 01788
12 kputsn_ [function] [call site] 01789
12 le_to_u32 [function] [call site] 01790
12 kputuw [function] [call site] 01791
12 kputsn_ [function] [call site] 01792
12 le_to_i32 [function] [call site] 01793
13 le_to_u32 [function] [call site] 01794
12 kputw [function] [call site] 01795
12 kputsn_ [function] [call site] 01796
12 kputc_ [function] [call site] 01797
12 le_to_float [function] [call site] 01798
13 le_to_u32 [function] [call site] 01799
12 ksprintf [function] [call site] 01800
12 le_to_double [function] [call site] 01801
13 le_to_u64 [function] [call site] 01802
12 ksprintf [function] [call site] 01803
12 kputc_ [function] [call site] 01804
12 kputc_ [function] [call site] 01805
12 kputc_ [function] [call site] 01806
12 le_to_u32 [function] [call site] 01807
12 kputsn_ [function] [call site] 01808
12 kputc [function] [call site] 01809
12 ks_expand [function] [call site] 01810
12 kputw [function] [call site] 01811
12 ks_expand [function] [call site] 01812
12 kputuw [function] [call site] 01813
12 ks_expand [function] [call site] 01814
12 le_to_i16 [function] [call site] 01815
12 kputw [function] [call site] 01816
12 ks_expand [function] [call site] 01817
12 le_to_u16 [function] [call site] 01818
12 kputuw [function] [call site] 01819
12 ks_expand [function] [call site] 01820
12 le_to_i32 [function] [call site] 01821
12 kputw [function] [call site] 01822
12 ks_expand [function] [call site] 01823
12 le_to_u32 [function] [call site] 01824
12 kputuw [function] [call site] 01825
12 ks_expand [function] [call site] 01826
12 le_to_float [function] [call site] 01827
12 kputd [function] [call site] 01828
12 __errno_location [call site] 01829
12 hts_log [function] [call site] 01830
12 __errno_location [call site] 01831
11 kputsn [function] [call site] 01832
11 hts_log [function] [call site] 01833
11 __errno_location [call site] 01834
11 hts_log [function] [call site] 01835
11 __errno_location [call site] 01836
10 __errno_location [call site] 01837
10 sam_state_err [function] [call site] 01838
10 kputc [function] [call site] 01839
10 pthread_mutex_lock [call site] 01840
10 pthread_mutex_unlock [call site] 01841
9 hts_tpool_process_flush [function] [call site] 01842
9 pthread_mutex_lock [call site] 01843
9 pthread_mutex_unlock [call site] 01844
9 hts_tpool_process_empty [function] [call site] 01845
9 usleep [call site] 01846
9 pthread_mutex_lock [call site] 01847
9 hts_tpool_process_is_shutdown [function] [call site] 01848
9 pthread_mutex_unlock [call site] 01849
9 hts_tpool_process_shutdown [function] [call site] 01850
9 pthread_join [call site] 01851
9 hts_tpool_process_destroy [function] [call site] 01852
9 hts_tpool_destroy [function] [call site] 01853
9 pthread_mutex_destroy [call site] 01854
9 pthread_mutex_destroy [call site] 01855
9 pthread_cond_destroy [call site] 01856
9 sam_free_sp_bams [function] [call site] 01857
9 sam_free_sp_bams [function] [call site] 01858
9 bam_hdr_destroy [function] [call site] 01859
10 sam_hdr_destroy [function] [call site] 01860
8 bgzf_thread_pool [function] [call site] 01861
9 calloc [call site] 01862
9 hts_tpool_size [function] [call site] 01863
9 hts_tpool_process_init [function] [call site] 01864
9 hts_tpool_process_ref_incr [function] [call site] 01865
10 pthread_mutex_unlock [call site] 01866
9 pool_create [function] [call site] 01867
9 pthread_mutex_init [call site] 01868
9 pthread_mutex_init [call site] 01869
9 pthread_mutex_init [call site] 01870
9 pthread_cond_init [call site] 01871
9 pthread_create [call site] 01872
6 hts_get_bgzfp [function] [call site] 01873
6 bgzf_mt [function] [call site] 01874
7 hts_tpool_init [function] [call site] 01875
7 bgzf_thread_pool [function] [call site] 01876
7 hts_tpool_destroy [function] [call site] 01877
6 hts_set_opt [function] [call site] 01878
7 hts_hfile [function] [call site] 01879
8 bgzf_hfile [function] [call site] 01880
8 cram_hfile [function] [call site] 01881
8 bgzf_hfile [function] [call site] 01882
7 hfile_set_blksize [function] [call site] 01883
7 hts_log [function] [call site] 01884
7 hts_log [function] [call site] 01885
7 hts_set_thread_pool [function] [call site] 01886
8 sam_set_thread_pool [function] [call site] 01887
8 hts_get_bgzfp [function] [call site] 01888
8 bgzf_thread_pool [function] [call site] 01889
8 hts_set_opt [function] [call site] 01890
9 hts_set_cache_size [function] [call site] 01891
10 hts_get_bgzfp [function] [call site] 01892
10 bgzf_set_cache_size [function] [call site] 01893
9 fastq_state_set [function] [call site] 01894
10 fastq_state_init [function] [call site] 01895
11 calloc [call site] 01896
11 strcpy [call site] 01897
10 strcmp [call site] 01898
10 kh_init_tag [function] [call site] 01899
11 calloc [call site] 01900
10 strlen [call site] 01901
10 hts_log [function] [call site] 01902
10 kh_put_tag [function] [call site] 01903
11 kh_resize_tag [function] [call site] 01904
10 strncpy [call site] 01905
9 fastq_state_set [function] [call site] 01906
9 fastq_state_set [function] [call site] 01907
9 cram_set_option [function] [call site] 01908
9 hts_set_filter_expression [function] [call site] 01909
10 hts_filter_free [function] [call site] 01910
11 regfree [call site] 01911
10 hts_filter_init [function] [call site] 01912
11 calloc [call site] 01913
11 strlen [call site] 01914
11 strcpy [call site] 01915
9 cram_set_voption [function] [call site] 01916
4 hts_set_opt [function] [call site] 01917
3 hts_opt_free [function] [call site] 01918
3 hts_opt_free [function] [call site] 01919
2 hclose_abruptly [function] [call site] 01920
2 hts_log [function] [call site] 01921
2 hclose_abruptly [function] [call site] 01922
1 hclose [function] [call site] 01923
1 abort [call site] 01924
1 view_sam [function] [call site] 01925
2 hts_open [function] [call site] 01926
3 hts_open_format [function] [call site] 01927
4 strncpy [call site] 01928
4 strchr [call site] 01929
4 strchr [call site] 01930
4 strdup [call site] 01931
4 hopen [function] [call site] 01932
4 hts_hopen [function] [call site] 01933
4 hts_opt_apply [function] [call site] 01934
4 __errno_location [call site] 01935
4 hts_log [function] [call site] 01936
4 hclose_abruptly [function] [call site] 01937
2 abort [call site] 01938
2 sam_hdr_read [function] [call site] 01939
3 __errno_location [call site] 01940
3 bam_hdr_read [function] [call site] 01941
4 bgzf_check_EOF [function] [call site] 01942
5 pthread_mutex_lock [call site] 01943
5 pthread_cond_signal [call site] 01944
5 hts_tpool_wake_dispatch [function] [call site] 01945
5 pthread_mutex_unlock [call site] 01946
5 pthread_cond_wait [call site] 01947
5 pthread_cond_signal [call site] 01948
5 abort [call site] 01949
5 pthread_mutex_unlock [call site] 01950
5 bgzf_check_EOF_common [function] [call site] 01951
6 htell [function] [call site] 01952
6 hseek [function] [call site] 01953
6 hclearerr [function] [call site] 01954
6 __errno_location [call site] 01955
6 hclearerr [function] [call site] 01956
6 hread [function] [call site] 01957
6 hseek [function] [call site] 01958
6 memcmp [call site] 01959
4 hts_log [function] [call site] 01960
4 bgzf_read [function] [call site] 01961
5 bgzf_read_block [function] [call site] 01962
5 hts_log [function] [call site] 01963
5 bgzf_htell [function] [call site] 01964
5 hts_log [function] [call site] 01965
5 bgzf_htell [function] [call site] 01966
4 memcmp [call site] 01967
4 hts_log [function] [call site] 01968
4 sam_hdr_init [function] [call site] 01969
4 bgzf_read [function] [call site] 01970
4 le_to_u32 [function] [call site] 01971
4 bgzf_read [function] [call site] 01972
4 ed_swap_4p [function] [call site] 01973
5 ed_swap_4 [function] [call site] 01974
4 calloc [call site] 01975
4 calloc [call site] 01976
4 bgzf_read [function] [call site] 01977
4 ed_swap_4p [function] [call site] 01978
4 bgzf_read [function] [call site] 01979
4 realloc [call site] 01980
4 bgzf_read [function] [call site] 01981
4 ed_swap_4p [function] [call site] 01982
4 hts_log [function] [call site] 01983
4 hts_log [function] [call site] 01984
4 hts_log [function] [call site] 01985
4 hts_log [function] [call site] 01986
4 sam_hdr_destroy [function] [call site] 01987
3 sam_hdr_dup [function] [call site] 01988
4 sam_hdr_init [function] [call site] 01989
4 sam_hdr_dup_sdict [function] [call site] 01990
5 kh_init_s2i [function] [call site] 01991
5 kh_get_s2i [function] [call site] 01992
5 kh_put_s2i [function] [call site] 01993
4 sam_hrecs_rebuild_text [function] [call site] 01994
5 kputsn [function] [call site] 01995
5 sam_hrecs_rebuild_lines [function] [call site] 01996
6 kputsn [function] [call site] 01997
6 build_header_line [function] [call site] 01998
7 kputc_ [function] [call site] 01999
7 kputsn [function] [call site] 02000
7 kputc_ [function] [call site] 02001
7 kputsn [function] [call site] 02002
6 kputc [function] [call site] 02003
4 ks_release [function] [call site] 02004
4 ks_release [function] [call site] 02005
4 sam_hdr_update_target_arrays [function] [call site] 02006
4 sam_hdr_destroy [function] [call site] 02007
3 sam_hdr_create [function] [call site] 02008
4 sam_hdr_init [function] [call site] 02009
4 kh_init_s2i [function] [call site] 02010
4 hts_getline [function] [call site] 02011
5 hts_log [function] [call site] 02012
5 kgetline2 [function] [call site] 02013
6 ks_resize [function] [call site] 02014
5 hgetln [function] [call site] 02015
5 herrno [function] [call site] 02016
5 __errno_location [call site] 02017
5 bgzf_getline [function] [call site] 02018
6 bgzf_read_block [function] [call site] 02019
6 ks_expand [function] [call site] 02020
6 bgzf_htell [function] [call site] 02021
5 abort [call site] 02022
4 strncmp [call site] 02023
4 strncmp [call site] 02024
4 hts_log [function] [call site] 02025
4 calloc [call site] 02026
4 strncpy [call site] 02027
4 strncmp [call site] 02028
4 kh_put_s2i [function] [call site] 02029
4 hts_log [function] [call site] 02030
4 kh_init_s2i [function] [call site] 02031
4 kh_put_s2i [function] [call site] 02032
4 hts_log [function] [call site] 02033
4 warn_if_known_stderr [function] [call site] 02034
5 strstr [call site] 02035
5 known_stderr [function] [call site] 02036
6 hts_log [function] [call site] 02037
6 hts_log [function] [call site] 02038
5 strstr [call site] 02039
5 known_stderr [function] [call site] 02040
5 strstr [call site] 02041
5 known_stderr [function] [call site] 02042
4 hts_log [function] [call site] 02043
4 warn_if_known_stderr [function] [call site] 02044
4 valid_sam_header_type [function] [call site] 02045
4 hts_log [function] [call site] 02046
4 warn_if_known_stderr [function] [call site] 02047
4 kputsn [function] [call site] 02048
4 kputc [function] [call site] 02049
4 bgzf_peek [function] [call site] 02050
5 bgzf_read_block [function] [call site] 02051
5 hts_log [function] [call site] 02052
4 hpeek [function] [call site] 02053
4 strstr [call site] 02054
4 hopen [function] [call site] 02055
4 kgetline [function] [call site] 02056
5 ks_resize [function] [call site] 02057
5 strlen [call site] 02058
4 hgets [function] [call site] 02059
4 strchr [call site] 02060
4 calloc [call site] 02061
4 kh_put_s2i [function] [call site] 02062
4 strtoll [call site] 02063
4 hts_log [function] [call site] 02064
4 kh_init_s2i [function] [call site] 02065
4 kh_put_s2i [function] [call site] 02066
4 kputs [function] [call site] 02067
4 kputsn [function] [call site] 02068
4 kputs [function] [call site] 02069
4 kputll [function] [call site] 02070
4 kputc [function] [call site] 02071
4 ks_free [function] [call site] 02072
5 ks_initialize [function] [call site] 02073
4 hclose [function] [call site] 02074
4 hts_log [function] [call site] 02075
4 kh_destroy_s2i [function] [call site] 02076
4 kputsn [function] [call site] 02077
4 ks_release [function] [call site] 02078
4 sam_hdr_sanitise [function] [call site] 02079
5 hts_log [function] [call site] 02080
5 hts_log [function] [call site] 02081
5 hts_log [function] [call site] 02082
5 hts_log [function] [call site] 02083
5 sam_hdr_destroy [function] [call site] 02084
5 realloc [call site] 02085
5 sam_hdr_destroy [function] [call site] 02086
4 sam_hdr_destroy [function] [call site] 02087
4 ks_free [function] [call site] 02088
4 kh_destroy_s2i [function] [call site] 02089
4 kh_destroy_s2i [function] [call site] 02090
3 sam_hdr_init [function] [call site] 02091
3 __errno_location [call site] 02092
3 __errno_location [call site] 02093
2 hts_close_or_abort [function] [call site] 02094
3 hts_close [function] [call site] 02095
4 bgzf_close [function] [call site] 02096
4 cram_eof [function] [call site] 02097
4 hts_log [function] [call site] 02098
4 cram_close [function] [call site] 02099
5 cram_update_curr_slice [function] [call site] 02100
5 cram_flush_container_mt [function] [call site] 02101
6 pthread_mutex_lock [call site] 02102
6 reset_metrics [function] [call site] 02103
7 pthread_mutex_unlock [call site] 02104
7 hts_tpool_process_flush [function] [call site] 02105
7 pthread_mutex_lock [call site] 02106
6 pthread_mutex_unlock [call site] 02107
6 cram_flush_container [function] [call site] 02108
7 cram_encode_container [function] [call site] 02109
8 pthread_mutex_lock [call site] 02110
8 pthread_mutex_unlock [call site] 02111
8 cram_get_ref [function] [call site] 02112
9 pthread_mutex_lock [call site] 02113
9 hts_log [function] [call site] 02114
9 pthread_mutex_unlock [call site] 02115
9 hts_log [function] [call site] 02116
9 pthread_mutex_unlock [call site] 02117
9 hts_log [function] [call site] 02118
9 pthread_mutex_unlock [call site] 02119
9 pthread_mutex_lock [call site] 02120
9 hts_log [function] [call site] 02121
9 cram_populate_ref [function] [call site] 02122
10 getenv [call site] 02123
10 getenv [call site] 02124
10 hts_log [function] [call site] 02125
10 get_cache_basedir [function] [call site] 02126
11 getenv [call site] 02127
11 getenv [call site] 02128
11 getenv [call site] 02129
11 getenv [call site] 02130
10 snprintf [call site] 02131
10 snprintf [call site] 02132
10 hts_log [function] [call site] 02133
10 sam_hrecs_find_type_id [function] [call site] 02134
10 sam_hrecs_find_key [function] [call site] 02135
10 hts_log [function] [call site] 02136
10 expand_cache_path [function] [call site] 02137
11 strchr [call site] 02138
11 strncpy [call site] 02139
11 strlen [call site] 02140
11 strcpy [call site] 02141
11 strtol [call site] 02142
11 strlen [call site] 02143
11 strncpy [call site] 02144
11 strlen [call site] 02145
11 strcpy [call site] 02146
11 strlen [call site] 02147
11 strcpy [call site] 02148
10 stat [call site] 02149
10 bgzf_open [function] [call site] 02150
10 string_dup [function] [call site] 02151
10 bgzf_close [function] [call site] 02152
10 open_path_mfile [function] [call site] 02153
11 getenv [call site] 02154
11 tokenise_search_path [function] [call site] 02155
12 strlen [call site] 02156
12 strncmp [call site] 02157
12 strncmp [call site] 02158
12 strncmp [call site] 02159
12 strncmp [call site] 02160
11 find_file_url [function] [call site] 02161
12 expand_path [function] [call site] 02162
13 strlen [call site] 02163
13 strlen [call site] 02164
13 strchr [call site] 02165
13 strtol [call site] 02166
13 strncpy [call site] 02167
13 strncpy [call site] 02168
13 strlen [call site] 02169
13 strlen [call site] 02170
13 strcpy [call site] 02171
12 __errno_location [call site] 02172
12 __errno_location [call site] 02173
12 hts_log [function] [call site] 02174
12 mfcreate [function] [call site] 02175
12 hread [function] [call site] 02176
12 mfwrite [function] [call site] 02177
12 hclose_abruptly [function] [call site] 02178
12 hclose [function] [call site] 02179
12 hts_log [function] [call site] 02180
12 mrewind [function] [call site] 02181
12 mfdestroy [function] [call site] 02182
11 strncmp [call site] 02183
11 strncmp [call site] 02184
11 strncmp [call site] 02185
11 find_file_url [function] [call site] 02186
11 find_file_dir [function] [call site] 02187
12 expand_path [function] [call site] 02188
12 is_file [function] [call site] 02189
13 stat [call site] 02190
12 mfopen [function] [call site] 02191
13 fopen [call site] 02192
13 mfreopen [function] [call site] 02193
14 strchr [call site] 02194
14 strchr [call site] 02195
14 strchr [call site] 02196
14 strchr [call site] 02197
14 strchr [call site] 02198
14 mfcreate [function] [call site] 02199
14 mfmmap [function] [call site] 02200
15 stat [call site] 02201
14 mfload [function] [call site] 02202
15 stat [call site] 02203
15 fread [call site] 02204
14 fseek [call site] 02205
14 mfcreate [function] [call site] 02206
14 hts_log [function] [call site] 02207
11 strlen [call site] 02208
11 strrchr [call site] 02209
11 find_file_dir [function] [call site] 02210
10 mfsteal [function] [call site] 02211
11 mfdetach [function] [call site] 02212
12 mfflush [function] [call site] 02213
12 fclose [call site] 02214
11 mfdestroy [function] [call site] 02215
10 sam_hrecs_find_key [function] [call site] 02216
10 strncmp [call site] 02217
10 bgzf_close [function] [call site] 02218
10 refs_load_fai [function] [call site] 02219
10 sanitise_SQ_lines [function] [call site] 02220
10 bgzf_close [function] [call site] 02221
10 refs2id [function] [call site] 02222
10 is_directory [function] [call site] 02223
11 stat [call site] 02224
10 hts_log [function] [call site] 02225
10 expand_cache_path [function] [call site] 02226
10 hts_log [function] [call site] 02227
10 mkdir_prefix [function] [call site] 02228
11 strrchr [call site] 02229
11 is_directory [function] [call site] 02230
11 mkdir [call site] 02231
11 chmod [call site] 02232
11 mkdir_prefix [function] [call site] 02233
12 mkdir [call site] 02234
12 chmod [call site] 02235
10 hts_open_tmpfile [function] [call site] 02236
11 getpid [call site] 02237
11 time [call site] 02238
11 ks_clear [function] [call site] 02239
11 ksprintf [function] [call site] 02240
11 hopen [function] [call site] 02241
11 __errno_location [call site] 02242
10 perror [call site] 02243
10 hts_md5_init [function] [call site] 02244
11 hts_md5_reset [function] [call site] 02245
10 hclose_abruptly [function] [call site] 02246
10 unlink [call site] 02247
10 hts_md5_update [function] [call site] 02248
11 body [function] [call site] 02249
11 body [function] [call site] 02250
10 hts_md5_final [function] [call site] 02251
11 body [function] [call site] 02252
11 body [function] [call site] 02253
10 hts_md5_destroy [function] [call site] 02254
10 hts_md5_hex [function] [call site] 02255
10 strncmp [call site] 02256
10 hts_log [function] [call site] 02257
10 hclose_abruptly [function] [call site] 02258
10 unlink [call site] 02259
10 hwrite [function] [call site] 02260
10 hclose [function] [call site] 02261
10 chmod [call site] 02262
10 rename [call site] 02263
10 __errno_location [call site] 02264
10 hts_log [function] [call site] 02265
10 unlink [call site] 02266
9 hts_log [function] [call site] 02267
9 pthread_mutex_unlock [call site] 02268
9 pthread_mutex_unlock [call site] 02269
9 cram_ref_incr_locked [function] [call site] 02270
9 cram_ref_incr_locked [function] [call site] 02271
9 cram_ref_load [function] [call site] 02272
10 __assert_fail [call site] 02273
10 __assert_fail [call site] 02274
10 ref_entry_free_seq [function] [call site] 02275
10 strcmp [call site] 02276
10 bgzf_close [function] [call site] 02277
10 bgzf_open_ref [function] [call site] 02278
10 load_ref_portion [function] [call site] 02279
11 bgzf_useek [function] [call site] 02280
12 hseek [function] [call site] 02281
12 bgzf_read_block [function] [call site] 02282
12 bgzf_seek_common [function] [call site] 02283
13 pthread_mutex_lock [call site] 02284
13 pthread_cond_signal [call site] 02285
13 hts_tpool_wake_dispatch [function] [call site] 02286
13 pthread_cond_wait [call site] 02287
13 pthread_cond_signal [call site] 02288
13 abort [call site] 02289
13 pthread_mutex_unlock [call site] 02290
13 hseek [function] [call site] 02291
12 bgzf_read_block [function] [call site] 02292
11 perror [call site] 02293
11 bgzf_read [function] [call site] 02294
11 perror [call site] 02295
11 isspace_c [function] [call site] 02296
11 isspace_c [function] [call site] 02297
11 isspace_c [function] [call site] 02298
11 hts_log [function] [call site] 02299
11 toupper_c [function] [call site] 02300
12 toupper [call site] 02301
9 pthread_mutex_unlock [call site] 02302
9 pthread_mutex_unlock [call site] 02303
9 cram_ref_incr_locked [function] [call site] 02304
9 pthread_mutex_unlock [call site] 02305
9 pthread_mutex_unlock [call site] 02306
9 pthread_mutex_unlock [call site] 02307
9 pthread_mutex_unlock [call site] 02308
9 strcmp [call site] 02309
9 bgzf_close [function] [call site] 02310
9 bgzf_open_ref [function] [call site] 02311
9 pthread_mutex_unlock [call site] 02312
9 pthread_mutex_unlock [call site] 02313
9 load_ref_portion [function] [call site] 02314
9 pthread_mutex_unlock [call site] 02315
9 pthread_mutex_unlock [call site] 02316
9 pthread_mutex_unlock [call site] 02317
9 pthread_mutex_unlock [call site] 02318
8 validate_md5 [function] [call site] 02319
9 sam_hrecs_find_type_id [function] [call site] 02320
9 sam_hrecs_find_key [function] [call site] 02321
9 hts_md5_init [function] [call site] 02322
9 hts_md5_update [function] [call site] 02323
9 hts_md5_final [function] [call site] 02324
9 hts_md5_destroy [function] [call site] 02325
9 hts_md5_hex [function] [call site] 02326
9 strcmp [call site] 02327
9 hts_log [function] [call site] 02328
9 hts_log [function] [call site] 02329
8 cram_get_ref [function] [call site] 02330
8 hts_log [function] [call site] 02331
8 hts_log [function] [call site] 02332
8 hts_log [function] [call site] 02333
8 hts_log [function] [call site] 02334
8 pthread_mutex_lock [call site] 02335
8 pthread_mutex_unlock [call site] 02336
8 validate_md5 [function] [call site] 02337
8 cram_ref_incr [function] [call site] 02338
9 pthread_mutex_lock [call site] 02339
9 cram_ref_incr_locked [function] [call site] 02340
9 pthread_mutex_unlock [call site] 02341
8 __assert_fail [call site] 02342
8 lossy_read_names [function] [call site] 02343
9 kh_init_m_s2u64 [function] [call site] 02344
10 calloc [call site] 02345
9 expected_template_count [function] [call site] 02346
10 bam_aux_get [function] [call site] 02347
11 bam_aux_first [function] [call site] 02348
12 __errno_location [call site] 02349
11 skip_aux [function] [call site] 02350
12 aux_type2size [function] [call site] 02351
12 aux_type2size [function] [call site] 02352
12 le_to_u32 [function] [call site] 02353
11 hts_log [function] [call site] 02354
11 __errno_location [call site] 02355
10 bam_aux2i [function] [call site] 02356
11 get_int_aux_val [function] [call site] 02357
12 le_to_i8 [function] [call site] 02358
12 le_to_i16 [function] [call site] 02359
12 le_to_u16 [function] [call site] 02360
12 le_to_i32 [function] [call site] 02361
12 le_to_u32 [function] [call site] 02362
12 __errno_location [call site] 02363
10 bam_aux_get [function] [call site] 02364
9 kh_put_m_s2u64 [function] [call site] 02365
10 kh_resize_m_s2u64 [function] [call site] 02366
11 __ac_X31_hash_string [function] [call site] 02367
9 kh_get_m_s2u64 [function] [call site] 02368
9 kh_destroy_m_s2u64 [function] [call site] 02369
8 cram_generate_reference [function] [call site] 02370
9 extend_ref [function] [call site] 02371
10 realloc [call site] 02372
10 realloc [call site] 02373
9 hts_log [function] [call site] 02374
9 cram_add_to_ref [function] [call site] 02375
10 bam_aux_get [function] [call site] 02376
10 cram_add_to_ref_MD [function] [call site] 02377
11 __ctype_b_loc [call site] 02378
11 hts_str2uint [function] [call site] 02379
11 extend_ref [function] [call site] 02380
11 next_cigar_op [function] [call site] 02381
11 hts_log [function] [call site] 02382
11 extend_ref [function] [call site] 02383
11 next_cigar_op [function] [call site] 02384
11 hts_log [function] [call site] 02385
11 extend_ref [function] [call site] 02386
11 next_cigar_op [function] [call site] 02387
11 hts_log [function] [call site] 02388
10 extend_ref [function] [call site] 02389
8 hts_log [function] [call site] 02390
8 cram_ref_decr [function] [call site] 02391
9 pthread_mutex_lock [call site] 02392
9 cram_ref_decr_locked [function] [call site] 02393
10 __assert_fail [call site] 02394
10 ref_entry_free_seq [function] [call site] 02395
9 pthread_mutex_unlock [call site] 02396
8 cram_get_ref [function] [call site] 02397
8 hts_log [function] [call site] 02398
8 validate_md5 [function] [call site] 02399
8 process_one_read [function] [call site] 02400
9 bam_aux_get [function] [call site] 02401
9 bam_aux_get [function] [call site] 02402
9 cram_stats_add [function] [call site] 02403
10 kh_init_m_i2i [function] [call site] 02404
11 calloc [call site] 02405
10 kh_put_m_i2i [function] [call site] 02406
9 cram_stats_add [function] [call site] 02407
9 cram_stats_add [function] [call site] 02408
9 block_grow [function] [call site] 02409
9 block_grow [function] [call site] 02410
9 nibble2base [function] [call site] 02411
9 hts_log [function] [call site] 02412
9 kputuw [function] [call site] 02413
9 kputc [function] [call site] 02414
9 cram_add_substitution [function] [call site] 02415
10 cram_stats_add [function] [call site] 02416
10 cram_stats_add [function] [call site] 02417
10 cram_stats_add [function] [call site] 02418
10 block_append_char [function] [call site] 02419
11 block_grow [function] [call site] 02420
10 cram_add_feature [function] [call site] 02421
11 realloc [call site] 02422
11 cram_stats_add [function] [call site] 02423
11 cram_stats_add [function] [call site] 02424
11 cram_stats_add [function] [call site] 02425
9 cram_add_bases [function] [call site] 02426
10 cram_add_feature [function] [call site] 02427
9 cram_add_base [function] [call site] 02428
10 cram_stats_add [function] [call site] 02429
10 cram_stats_add [function] [call site] 02430
10 block_append_char [function] [call site] 02431
10 cram_add_feature [function] [call site] 02432
9 cram_add_base [function] [call site] 02433
9 kputuw [function] [call site] 02434
9 kputc_ [function] [call site] 02435
9 kputsn [function] [call site] 02436
9 cram_add_deletion [function] [call site] 02437
10 cram_stats_add [function] [call site] 02438
10 cram_add_feature [function] [call site] 02439
9 cram_add_skip [function] [call site] 02440
10 cram_stats_add [function] [call site] 02441
10 cram_add_feature [function] [call site] 02442
9 cram_add_insertion [function] [call site] 02443
10 cram_stats_add [function] [call site] 02444
10 block_append [function] [call site] 02445
10 block_append_char [function] [call site] 02446
10 block_append_char [function] [call site] 02447
10 cram_add_feature [function] [call site] 02448
9 cram_add_quality [function] [call site] 02449
10 cram_stats_add [function] [call site] 02450
10 block_append_char [function] [call site] 02451
10 cram_add_feature [function] [call site] 02452
9 cram_add_softclip [function] [call site] 02453
10 block_append [function] [call site] 02454
10 block_append_char [function] [call site] 02455
10 block_append [function] [call site] 02456
10 block_append_char [function] [call site] 02457
10 block_append_char [function] [call site] 02458
10 cram_add_feature [function] [call site] 02459
9 cram_add_quality [function] [call site] 02460
9 cram_add_quality [function] [call site] 02461
9 cram_add_hardclip [function] [call site] 02462
10 cram_stats_add [function] [call site] 02463
10 cram_add_feature [function] [call site] 02464
9 cram_add_pad [function] [call site] 02465
10 cram_stats_add [function] [call site] 02466
10 cram_add_feature [function] [call site] 02467
9 hts_log [function] [call site] 02468
9 hts_log [function] [call site] 02469
9 cram_stats_add [function] [call site] 02470
9 kputuw [function] [call site] 02471
9 cram_stats_add [function] [call site] 02472
9 cram_encode_aux [function] [call site] 02473
10 sam_hrecs_find_rg [function] [call site] 02474
11 kh_get_m_s2i [function] [call site] 02475
10 block_append [function] [call site] 02476
10 hts_log [function] [call site] 02477
10 strncasecmp [call site] 02478
10 block_append [function] [call site] 02479
10 bam_aux2i [function] [call site] 02480
10 block_append [function] [call site] 02481
10 block_append [function] [call site] 02482
10 kh_put_m_tagmap [function] [call site] 02483
11 kh_resize_m_tagmap [function] [call site] 02484
12 realloc [call site] 02485
10 pthread_mutex_lock [call site] 02486
10 kh_put_m_metrics [function] [call site] 02487
11 kh_resize_m_metrics [function] [call site] 02488
10 pthread_mutex_unlock [call site] 02489
10 cram_new_metrics [function] [call site] 02490
10 kh_del_m_metrics [function] [call site] 02491
10 pthread_mutex_unlock [call site] 02492
10 pthread_mutex_unlock [call site] 02493
10 calloc [call site] 02494
10 cram_encoder_init [function] [call site] 02495
11 cram_encoding2str [function] [call site] 02496
11 hts_log [function] [call site] 02497
11 cram_encoding2str [function] [call site] 02498
11 hts_log [function] [call site] 02499
11 abort [call site] 02500
10 cram_stats_add [function] [call site] 02501
10 cram_stats_encoding [function] [call site] 02502
11 realloc [call site] 02503
11 realloc [call site] 02504
10 cram_encoder_init [function] [call site] 02505
10 cram_stats_add [function] [call site] 02506
10 cram_stats_encoding [function] [call site] 02507
10 cram_encoder_init [function] [call site] 02508
10 cram_stats_add [function] [call site] 02509
10 cram_stats_encoding [function] [call site] 02510
10 cram_encoder_init [function] [call site] 02511
10 cram_encoder_init [function] [call site] 02512
10 hts_log [function] [call site] 02513
10 pthread_mutex_lock [call site] 02514
10 cram_new_block [function] [call site] 02515
10 block_append_char [function] [call site] 02516
10 cram_new_block [function] [call site] 02517
10 block_append [function] [call site] 02518
10 cram_new_block [function] [call site] 02519
10 block_append [function] [call site] 02520
10 cram_new_block [function] [call site] 02521
10 block_append [function] [call site] 02522
10 cram_new_block [function] [call site] 02523
10 cram_new_block [function] [call site] 02524
10 cram_new_block [function] [call site] 02525
10 hts_log [function] [call site] 02526
10 hts_log [function] [call site] 02527
10 block_append_char [function] [call site] 02528
10 string_ndup [function] [call site] 02529
10 kh_put_m_s2i [function] [call site] 02530
11 kh_resize_m_s2i [function] [call site] 02531
12 __ac_X31_hash_string [function] [call site] 02532
10 cram_stats_add [function] [call site] 02533
9 sam_hrecs_find_rg [function] [call site] 02534
9 cram_stats_add [function] [call site] 02535
9 block_grow [function] [call site] 02536
9 block_grow [function] [call site] 02537
9 cram_stats_add [function] [call site] 02538
9 string_ndup [function] [call site] 02539
9 kh_put_m_s2i [function] [call site] 02540
9 llabs [call site] 02541
9 cram_stats_add [function] [call site] 02542
9 cram_stats_add [function] [call site] 02543
9 cram_stats_del [function] [call site] 02544
10 kh_get_m_i2i [function] [call site] 02545
10 kh_del_m_i2i [function] [call site] 02546
10 hts_log [function] [call site] 02547
10 hts_log [function] [call site] 02548
9 cram_stats_del [function] [call site] 02549
9 cram_stats_del [function] [call site] 02550
9 cram_stats_del [function] [call site] 02551
9 cram_stats_add [function] [call site] 02552
9 cram_stats_del [function] [call site] 02553
9 cram_stats_add [function] [call site] 02554
9 cram_stats_add [function] [call site] 02555
9 cram_stats_add [function] [call site] 02556
9 cram_stats_add [function] [call site] 02557
9 cram_stats_add [function] [call site] 02558
9 cram_stats_add [function] [call site] 02559
9 cram_stats_add [function] [call site] 02560
9 cram_stats_add [function] [call site] 02561
8 add_read_names [function] [call site] 02562
9 block_append [function] [call site] 02563
9 block_append [function] [call site] 02564
9 cram_stats_add [function] [call site] 02565
8 calloc [call site] 02566
8 __assert_fail [call site] 02567
8 cram_ref_decr [function] [call site] 02568
8 pthread_mutex_lock [call site] 02569
8 pthread_mutex_unlock [call site] 02570
8 cram_stats_encoding [function] [call site] 02571
8 pthread_mutex_lock [call site] 02572
8 pthread_mutex_unlock [call site] 02573
8 hts_log [function] [call site] 02574
8 hts_md5_init [function] [call site] 02575
8 hts_md5_update [function] [call site] 02576
8 hts_md5_final [function] [call site] 02577
8 hts_md5_destroy [function] [call site] 02578
8 cram_stats_encoding [function] [call site] 02579
8 cram_encoder_init [function] [call site] 02580
8 cram_stats_encoding [function] [call site] 02581
8 cram_encoder_init [function] [call site] 02582
8 cram_stats_encoding [function] [call site] 02583
8 cram_encoder_init [function] [call site] 02584
8 cram_encoder_init [function] [call site] 02585
8 cram_encoder_init [function] [call site] 02586
8 cram_stats_encoding [function] [call site] 02587
8 cram_encoder_init [function] [call site] 02588
8 cram_stats_encoding [function] [call site] 02589
8 cram_encoder_init [function] [call site] 02590
8 cram_stats_encoding [function] [call site] 02591
8 cram_encoder_init [function] [call site] 02592
8 cram_stats_encoding [function] [call site] 02593
8 cram_encoder_init [function] [call site] 02594
8 cram_stats_encoding [function] [call site] 02595
8 cram_encoder_init [function] [call site] 02596
8 cram_stats_encoding [function] [call site] 02597
8 cram_encoder_init [function] [call site] 02598
8 cram_stats_encoding [function] [call site] 02599
8 cram_encoder_init [function] [call site] 02600
8 cram_stats_encoding [function] [call site] 02601
8 cram_encoder_init [function] [call site] 02602
8 cram_stats_encoding [function] [call site] 02603
8 cram_encoder_init [function] [call site] 02604
8 cram_stats_encoding [function] [call site] 02605
8 cram_encoder_init [function] [call site] 02606
8 cram_stats_encoding [function] [call site] 02607
8 cram_encoder_init [function] [call site] 02608
8 cram_stats_encoding [function] [call site] 02609
8 cram_encoder_init [function] [call site] 02610
8 cram_stats_encoding [function] [call site] 02611
8 cram_encoder_init [function] [call site] 02612
8 cram_encoder_init [function] [call site] 02613
8 cram_stats_encoding [function] [call site] 02614
8 cram_encoder_init [function] [call site] 02615
8 cram_stats_encoding [function] [call site] 02616
8 cram_encoder_init [function] [call site] 02617
8 cram_stats_encoding [function] [call site] 02618
8 cram_encoder_init [function] [call site] 02619
8 cram_stats_encoding [function] [call site] 02620
8 cram_encoder_init [function] [call site] 02621
8 cram_stats_encoding [function] [call site] 02622
8 cram_encoder_init [function] [call site] 02623
8 cram_stats_encoding [function] [call site] 02624
8 cram_encoder_init [function] [call site] 02625
8 cram_stats_encoding [function] [call site] 02626
8 cram_encoder_init [function] [call site] 02627
8 cram_stats_encoding [function] [call site] 02628
8 cram_encoder_init [function] [call site] 02629
8 cram_encoder_init [function] [call site] 02630
8 cram_encoder_init [function] [call site] 02631
8 cram_encoder_init [function] [call site] 02632
8 cram_encoder_init [function] [call site] 02633
8 hts_log [function] [call site] 02634
8 cram_encode_slice [function] [call site] 02635
9 cram_new_block [function] [call site] 02636
9 cram_new_block [function] [call site] 02637
9 cram_new_block [function] [call site] 02638
9 block_append [function] [call site] 02639
9 cram_allocate_block [function] [call site] 02640
10 cram_new_block [function] [call site] 02641
10 cram_new_block [function] [call site] 02642
10 cram_allocate_block [function] [call site] 02643
11 cram_allocate_block [function] [call site] 02644
12 cram_allocate_block [function] [call site] 02645
13 cram_allocate_block [function] [call site] 02646
14 cram_allocate_block [function] [call site] 02647
15 cram_new_block [function] [call site] 02648
15 cram_allocate_block [function] [call site] 02649
16 cram_new_block [function] [call site] 02650
9 cram_encode_slice_read [function] [call site] 02651
10 hts_log [function] [call site] 02652
9 cram_free_block [function] [call site] 02653
9 cram_free_block [function] [call site] 02654
9 cram_free_block [function] [call site] 02655
9 cram_free_block [function] [call site] 02656
9 cram_compress_slice [function] [call site] 02657
10 cram_compress_block2 [function] [call site] 02658
11 pthread_mutex_unlock [call site] 02659
11 cram_compress_by_method [function] [call site] 02660
12 zlib_mem_deflate [function] [call site] 02661
13 deflateInit2_ [call site] 02662
13 hts_log [function] [call site] 02663
13 hts_log [function] [call site] 02664
13 deflate [call site] 02665
13 hts_log [function] [call site] 02666
13 deflate [call site] 02667
13 hts_log [function] [call site] 02668
13 deflateEnd [call site] 02669
13 hts_log [function] [call site] 02670
12 BZ2_bzBuffToBuffCompress [call site] 02671
12 fqz_compress [function] [call site] 02672
13 compress_block_fqz2f [function] [call site] 02673
14 fqz_pick_parameters [function] [call site] 02674
15 calloc [call site] 02675
15 fqz_qual_stats [function] [call site] 02676
16 calloc [call site] 02677
16 memcmp [call site] 02678
16 log [call site] 02679
16 log [call site] 02680
16 log [call site] 02681
16 log [call site] 02682
16 log [call site] 02683
16 log [call site] 02684
15 log [call site] 02685
14 var_put_u32 [function] [call site] 02686
15 var_put_u32_safe [function] [call site] 02687
14 fqz_store_parameters [function] [call site] 02688
15 store_array [function] [call site] 02689
15 fqz_store_parameters1 [function] [call site] 02690
16 store_array [function] [call site] 02691
16 store_array [function] [call site] 02692
16 store_array [function] [call site] 02693
14 fqz_create_models [function] [call site] 02694
14 RC_SetOutput [function] [call site] 02695
14 RC_StartEncode [function] [call site] 02696
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02697
15 RC_Encode [function] [call site] 02698
16 RC_ShiftLow [function] [call site] 02699
15 SIMPLE_MODEL256_normalize [function] [call site] 02700
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02701
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02702
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02703
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02704
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02705
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02706
14 memcmp [call site] 02707
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02708
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02709
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02710
14 fqz_update_ctx [function] [call site] 02711
14 RC_FinishEncode [function] [call site] 02712
15 RC_ShiftLow [function] [call site] 02713
14 RC_OutSize [function] [call site] 02714
14 fqz_destroy_models [function] [call site] 02715
14 fqz_free_parameters [function] [call site] 02716
12 lzma_mem_deflate [function] [call site] 02717
13 lzma_stream_buffer_bound [call site] 02718
13 lzma_easy_buffer_encode [call site] 02719
12 rans_compress [function] [call site] 02720
13 rans_compress_O1 [function] [call site] 02721
14 rans_compress_O0 [function] [call site] 02722
15 hist8 [function] [call site] 02723
16 htscodecs_tls_calloc [function] [call site] 02724
16 htscodecs_tls_free [function] [call site] 02725
15 RansEncSymbolInit [function] [call site] 02726
16 __assert_fail [call site] 02727
16 __assert_fail [call site] 02728
16 __assert_fail [call site] 02729
15 RansEncInit [function] [call site] 02730
15 RansEncInit [function] [call site] 02731
15 RansEncInit [function] [call site] 02732
15 RansEncInit [function] [call site] 02733
15 RansEncPutSymbol [function] [call site] 02734
16 __assert_fail [call site] 02735
15 RansEncPutSymbol [function] [call site] 02736
15 RansEncPutSymbol [function] [call site] 02737
15 RansEncPutSymbol [function] [call site] 02738
15 RansEncPutSymbol [function] [call site] 02739
15 RansEncPutSymbol [function] [call site] 02740
15 RansEncPutSymbol [function] [call site] 02741
15 RansEncFlush [function] [call site] 02742
15 RansEncFlush [function] [call site] 02743
15 RansEncFlush [function] [call site] 02744
15 RansEncFlush [function] [call site] 02745
14 htscodecs_tls_alloc [function] [call site] 02746
14 hist1_4 [function] [call site] 02747
15 htscodecs_tls_calloc [function] [call site] 02748
14 RansEncSymbolInit [function] [call site] 02749
14 RansEncInit [function] [call site] 02750
14 RansEncInit [function] [call site] 02751
14 RansEncInit [function] [call site] 02752
14 RansEncInit [function] [call site] 02753
14 RansEncPutSymbol [function] [call site] 02754
14 RansEncPutSymbol4 [function] [call site] 02755
15 __assert_fail [call site] 02756
15 __assert_fail [call site] 02757
14 RansEncPutSymbol [function] [call site] 02758
14 RansEncPutSymbol [function] [call site] 02759
14 RansEncPutSymbol [function] [call site] 02760
14 RansEncPutSymbol [function] [call site] 02761
14 RansEncFlush [function] [call site] 02762
14 RansEncFlush [function] [call site] 02763
14 RansEncFlush [function] [call site] 02764
14 RansEncFlush [function] [call site] 02765
14 htscodecs_tls_free [function] [call site] 02766
13 rans_compress_O0 [function] [call site] 02767
12 rans_compress_4x16 [function] [call site] 02768
13 rans_compress_to_4x16 [function] [call site] 02769
14 rans_compress_bound_4x16 [function] [call site] 02770
14 var_put_u32 [function] [call site] 02771
14 rans_compress_to_4x16 [function] [call site] 02772
15 var_put_u32 [function] [call site] 02773
15 var_put_u32 [function] [call site] 02774
15 var_put_u32 [function] [call site] 02775
15 hts_pack [function] [call site] 02776
15 var_put_u32 [function] [call site] 02777
15 hts_rle_encode [function] [call site] 02778
16 rle_find_syms [function] [call site] 02779
16 var_put_u32 [function] [call site] 02780
15 var_put_u32 [function] [call site] 02781
15 rans_enc_func [function] [call site] 02782
16 __get_cpuid_max [function] [call site] 02783
16 rans_compress_O1_32x16_avx512 [function] [call site] 02784
17 rans_compress_bound_4x16 [function] [call site] 02785
17 htscodecs_tls_alloc [function] [call site] 02786
17 encode_freq1 [function] [call site] 02787
18 htscodecs_tls_calloc [function] [call site] 02788
18 hist1_4 [function] [call site] 02789
18 encode_alphabet [function] [call site] 02790
18 rans_compute_shift [function] [call site] 02791
19 round2 [function] [call site] 02792
19 log [call site] 02793
19 fast_log [function] [call site] 02794
19 fast_log [function] [call site] 02795
18 normalise_freq [function] [call site] 02796
18 encode_freq_d [function] [call site] 02797
19 var_put_u32 [function] [call site] 02798
19 __assert_fail [call site] 02799
18 normalise_freq_shift [function] [call site] 02800
18 RansEncSymbolInit [function] [call site] 02801
19 __assert_fail [call site] 02802
19 __assert_fail [call site] 02803
18 rans_compress_O0_4x16 [function] [call site] 02804
19 rans_compress_bound_4x16 [function] [call site] 02805
19 hist8 [function] [call site] 02806
19 round2 [function] [call site] 02807
19 normalise_freq [function] [call site] 02808
19 encode_freq [function] [call site] 02809
20 encode_alphabet [function] [call site] 02810
20 var_put_u32 [function] [call site] 02811
19 normalise_freq [function] [call site] 02812
19 RansEncSymbolInit [function] [call site] 02813
19 RansEncInit [function] [call site] 02814
19 RansEncInit [function] [call site] 02815
19 RansEncInit [function] [call site] 02816
19 RansEncInit [function] [call site] 02817
19 RansEncPutSymbol [function] [call site] 02818
19 RansEncPutSymbol [function] [call site] 02819
19 RansEncPutSymbol [function] [call site] 02820
19 RansEncPutSymbol [function] [call site] 02821
19 RansEncPutSymbol [function] [call site] 02822
19 RansEncPutSymbol [function] [call site] 02823
19 RansEncPutSymbol [function] [call site] 02824
19 RansEncFlush [function] [call site] 02825
19 RansEncFlush [function] [call site] 02826
19 RansEncFlush [function] [call site] 02827
19 RansEncFlush [function] [call site] 02828
18 var_put_u32 [function] [call site] 02829
18 var_put_u32 [function] [call site] 02830
18 htscodecs_tls_free [function] [call site] 02831
18 htscodecs_tls_free [function] [call site] 02832
17 htscodecs_tls_free [function] [call site] 02833
17 RansEncInit [function] [call site] 02834
17 RansEncPutSymbol [function] [call site] 02835
17 RansEncPutSymbol [function] [call site] 02836
17 RansEncFlush [function] [call site] 02837
17 htscodecs_tls_free [function] [call site] 02838
16 rans_compress_O1_32x16_avx2 [function] [call site] 02839
17 rans_compress_bound_4x16 [function] [call site] 02840
17 htscodecs_tls_alloc [function] [call site] 02841
17 encode_freq1 [function] [call site] 02842
17 htscodecs_tls_free [function] [call site] 02843
17 RansEncInit [function] [call site] 02844
17 RansEncPutSymbol [function] [call site] 02845
17 _mm256_mulhi_epu32 [function] [call site] 02846
17 _mm256_mulhi_epu32 [function] [call site] 02847
17 _mm256_mulhi_epu32 [function] [call site] 02848
17 _mm256_mulhi_epu32 [function] [call site] 02849
17 RansEncPutSymbol [function] [call site] 02850
17 RansEncFlush [function] [call site] 02851
17 htscodecs_tls_free [function] [call site] 02852
16 rans_compress_O1_32x16 [function] [call site] 02853
17 rans_compress_bound_4x16 [function] [call site] 02854
17 htscodecs_tls_alloc [function] [call site] 02855
17 encode_freq1 [function] [call site] 02856
17 htscodecs_tls_free [function] [call site] 02857
17 RansEncInit [function] [call site] 02858
17 RansEncPutSymbol [function] [call site] 02859
17 RansEncPutSymbol [function] [call site] 02860
17 RansEncFlush [function] [call site] 02861
17 htscodecs_tls_free [function] [call site] 02862
16 rans_compress_O1_32x16 [function] [call site] 02863
16 rans_compress_O0_32x16_avx512 [function] [call site] 02864
17 rans_compress_bound_4x16 [function] [call site] 02865
17 hist8 [function] [call site] 02866
17 round2 [function] [call site] 02867
17 normalise_freq [function] [call site] 02868
17 encode_freq [function] [call site] 02869
17 normalise_freq [function] [call site] 02870
17 RansEncSymbolInit [function] [call site] 02871
17 RansEncInit [function] [call site] 02872
17 RansEncPutSymbol [function] [call site] 02873
17 RansEncFlush [function] [call site] 02874
16 rans_compress_O0_32x16_avx2 [function] [call site] 02875
17 rans_compress_bound_4x16 [function] [call site] 02876
17 hist8 [function] [call site] 02877
17 round2 [function] [call site] 02878
17 normalise_freq [function] [call site] 02879
17 encode_freq [function] [call site] 02880
17 normalise_freq [function] [call site] 02881
17 RansEncSymbolInit [function] [call site] 02882
17 RansEncPutSymbol [function] [call site] 02883
17 _mm256_mulhi_epu32 [function] [call site] 02884
17 _mm256_mulhi_epu32 [function] [call site] 02885
17 _mm256_mulhi_epu32 [function] [call site] 02886
17 _mm256_mulhi_epu32 [function] [call site] 02887
17 RansEncFlush [function] [call site] 02888
16 rans_compress_O0_32x16 [function] [call site] 02889
17 rans_compress_bound_4x16 [function] [call site] 02890
17 hist8e [function] [call site] 02891
17 round2 [function] [call site] 02892
17 normalise_freq [function] [call site] 02893
17 encode_freq [function] [call site] 02894
17 normalise_freq [function] [call site] 02895
17 RansEncInit [function] [call site] 02896
17 RansEncPutSymbol [function] [call site] 02897
17 RansEncPutSymbol_branched [function] [call site] 02898
17 RansEncPutSymbol_branched [function] [call site] 02899
17 RansEncPutSymbol_branched [function] [call site] 02900
17 RansEncPutSymbol_branched [function] [call site] 02901
17 RansEncPutSymbol_branched [function] [call site] 02902
17 RansEncPutSymbol_branched [function] [call site] 02903
17 RansEncPutSymbol_branched [function] [call site] 02904
17 RansEncPutSymbol_branched [function] [call site] 02905
17 abort [call site] 02906
17 RansEncFlush [function] [call site] 02907
16 rans_compress_O0_32x16 [function] [call site] 02908
15 var_put_u32 [function] [call site] 02909
15 var_put_u32 [function] [call site] 02910
15 var_put_u32 [function] [call site] 02911
15 rans_enc_func [function] [call site] 02912
12 arith_compress_to [function] [call site] 02913
13 arith_compress_bound [function] [call site] 02914
13 var_put_u32 [function] [call site] 02915
13 var_put_u32 [function] [call site] 02916
13 arith_compress_to [function] [call site] 02917
14 arith_compress_to [function] [call site] 02918
15 var_put_u32 [function] [call site] 02919
15 var_put_u32 [function] [call site] 02920
15 hts_pack [function] [call site] 02921
15 var_put_u32 [function] [call site] 02922
15 arith_compress_O0_RLE [function] [call site] 02923
16 arith_compress_bound [function] [call site] 02924
16 SIMPLE_MODEL256_init [function] [call site] 02925
16 htscodecs_tls_alloc [function] [call site] 02926
16 SIMPLE_MODEL258_init [function] [call site] 02927
16 RC_SetOutput [function] [call site] 02928
16 RC_StartEncode [function] [call site] 02929
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02930
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02931
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02932
16 RC_FinishEncode [function] [call site] 02933
16 RC_OutSize [function] [call site] 02934
16 htscodecs_tls_free [function] [call site] 02935
15 arith_compress_O1_RLE [function] [call site] 02936
16 arith_compress_bound [function] [call site] 02937
16 htscodecs_tls_alloc [function] [call site] 02938
16 SIMPLE_MODEL256_init [function] [call site] 02939
16 htscodecs_tls_alloc [function] [call site] 02940
16 htscodecs_tls_free [function] [call site] 02941
16 SIMPLE_MODEL258_init [function] [call site] 02942
16 RC_SetOutput [function] [call site] 02943
16 RC_StartEncode [function] [call site] 02944
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02945
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02946
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02947
16 RC_FinishEncode [function] [call site] 02948
16 RC_OutSize [function] [call site] 02949
16 htscodecs_tls_free [function] [call site] 02950
16 htscodecs_tls_free [function] [call site] 02951
15 arith_compress_O1 [function] [call site] 02952
16 arith_compress_bound [function] [call site] 02953
16 SIMPLE_MODEL256_init [function] [call site] 02954
16 RC_SetOutput [function] [call site] 02955
16 RC_StartEncode [function] [call site] 02956
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02957
16 RC_FinishEncode [function] [call site] 02958
16 RC_OutSize [function] [call site] 02959
16 htscodecs_tls_free [function] [call site] 02960
15 arith_compress_O0 [function] [call site] 02961
16 arith_compress_bound [function] [call site] 02962
16 SIMPLE_MODEL256_init [function] [call site] 02963
16 RC_SetOutput [function] [call site] 02964
16 RC_StartEncode [function] [call site] 02965
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02966
16 RC_FinishEncode [function] [call site] 02967
16 RC_OutSize [function] [call site] 02968
12 tok3_encode_names [function] [call site] 02969
13 create_context [function] [call site] 02970
13 build_trie [function] [call site] 02971
14 calloc [call site] 02972
14 pool_create [function] [call site] 02973
14 pool_alloc [function] [call site] 02974
15 new_pool [function] [call site] 02975
16 realloc [call site] 02976
13 free_context [function] [call site] 02977
13 encode_name [function] [call site] 02978
14 search_trie [function] [call site] 02979
15 calloc [call site] 02980
14 encode_token_dup [function] [call site] 02981
15 encode_token_int [function] [call site] 02982
16 encode_token_type [function] [call site] 02983
17 descriptor_grow [function] [call site] 02984
18 realloc [call site] 02985
16 descriptor_grow [function] [call site] 02986
14 encode_token_diff [function] [call site] 02987
15 encode_token_int [function] [call site] 02988
14 memcmp [call site] 02989
14 encode_token_match [function] [call site] 02990
15 encode_token_type [function] [call site] 02991
14 encode_token_alpha [function] [call site] 02992
15 encode_token_type [function] [call site] 02993
15 descriptor_grow [function] [call site] 02994
14 encode_token_alpha [function] [call site] 02995
14 __ctype_b_loc [call site] 02996
14 memcmp [call site] 02997
14 encode_token_match [function] [call site] 02998
14 encode_token_alpha [function] [call site] 02999
14 encode_token_alpha [function] [call site] 03000
14 __ctype_b_loc [call site] 03001
14 encode_token_match [function] [call site] 03002
14 encode_token_int1 [function] [call site] 03003
15 encode_token_type [function] [call site] 03004
15 descriptor_grow [function] [call site] 03005
14 encode_token_int1_ [function] [call site] 03006
15 descriptor_grow [function] [call site] 03007
14 encode_token_int [function] [call site] 03008
14 encode_token_int1_ [function] [call site] 03009
14 encode_token_int [function] [call site] 03010
14 __ctype_b_loc [call site] 03011
14 __ctype_b_loc [call site] 03012
14 encode_token_match [function] [call site] 03013
14 encode_token_int1 [function] [call site] 03014
14 encode_token_int [function] [call site] 03015
14 encode_token_int [function] [call site] 03016
14 encode_token_match [function] [call site] 03017
14 encode_token_char [function] [call site] 03018
15 encode_token_type [function] [call site] 03019
15 descriptor_grow [function] [call site] 03020
14 encode_token_char [function] [call site] 03021
14 encode_token_end [function] [call site] 03022
15 encode_token_type [function] [call site] 03023
14 realloc [call site] 03024
13 free_context [function] [call site] 03025
13 arith_compress_bound [function] [call site] 03026
13 free_context [function] [call site] 03027
13 compress [function] [call site] 03028
14 arith_encode [function] [call site] 03029
15 arith_compress_to [function] [call site] 03030
15 var_put_u32 [function] [call site] 03031
14 rans_encode [function] [call site] 03032
15 rans_compress_to_4x16 [function] [call site] 03033
15 var_put_u32 [function] [call site] 03034
14 arith_encode [function] [call site] 03035
14 rans_encode [function] [call site] 03036
13 free_context [function] [call site] 03037
13 memcmp [call site] 03038
13 free_context [function] [call site] 03039
13 free_context [function] [call site] 03040
11 pthread_mutex_lock [call site] 03041
11 pthread_mutex_unlock [call site] 03042
11 pthread_mutex_unlock [call site] 03043
11 cram_compress_by_method [function] [call site] 03044
11 cram_compress_by_method [function] [call site] 03045
11 hts_log [function] [call site] 03046
11 cram_block_method2str [function] [call site] 03047
11 hts_log [function] [call site] 03048
10 pthread_mutex_lock [call site] 03049
10 cram_compress_block2 [function] [call site] 03050
10 cram_compress_block2 [function] [call site] 03051
10 cram_compress_block2 [function] [call site] 03052
10 cram_compress_block2 [function] [call site] 03053
10 cram_compress_block2 [function] [call site] 03054
10 cram_compress_block2 [function] [call site] 03055
10 cram_compress_block2 [function] [call site] 03056
10 cram_compress_block2 [function] [call site] 03057
10 cram_compress_block2 [function] [call site] 03058
10 cram_compress_block2 [function] [call site] 03059
10 cram_compress_block2 [function] [call site] 03060
10 cram_compress_block2 [function] [call site] 03061
10 cram_compress_block2 [function] [call site] 03062
10 cram_compress_block2 [function] [call site] 03063
10 cram_compress_block2 [function] [call site] 03064
9 realloc [call site] 03065
9 cram_free_block [function] [call site] 03066
9 cram_encode_slice_header [function] [call site] 03067
10 cram_new_block [function] [call site] 03068
10 cram_free_block [function] [call site] 03069
10 __assert_fail [call site] 03070
8 cram_encode_compression_header [function] [call site] 03071
9 cram_new_block [function] [call site] 03072
9 cram_new_block [function] [call site] 03073
9 itf8_put_blk [function] [call site] 03074
9 itf8_put_blk [function] [call site] 03075
9 itf8_put_blk [function] [call site] 03076
9 itf8_put_blk [function] [call site] 03077
9 itf8_put_blk [function] [call site] 03078
9 itf8_put_blk [function] [call site] 03079
9 kh_destroy_map [function] [call site] 03080
9 kh_init_map [function] [call site] 03081
10 calloc [call site] 03082
9 kh_put_map [function] [call site] 03083
10 kh_resize_map [function] [call site] 03084
11 __ac_X31_hash_string [function] [call site] 03085
9 kh_put_map [function] [call site] 03086
9 kh_put_map [function] [call site] 03087
9 kh_put_map [function] [call site] 03088
9 kh_put_map [function] [call site] 03089
9 kh_put_map [function] [call site] 03090
9 kh_put_map [function] [call site] 03091
9 kh_put_map [function] [call site] 03092
9 kh_put_map [function] [call site] 03093
9 block_append [function] [call site] 03094
9 block_append_char [function] [call site] 03095
9 sub_idx [function] [call site] 03096
9 sub_idx [function] [call site] 03097
9 sub_idx [function] [call site] 03098
9 sub_idx [function] [call site] 03099
9 sub_idx [function] [call site] 03100
9 sub_idx [function] [call site] 03101
9 sub_idx [function] [call site] 03102
9 sub_idx [function] [call site] 03103
9 sub_idx [function] [call site] 03104
9 sub_idx [function] [call site] 03105
9 sub_idx [function] [call site] 03106
9 sub_idx [function] [call site] 03107
9 sub_idx [function] [call site] 03108
9 sub_idx [function] [call site] 03109
9 sub_idx [function] [call site] 03110
9 sub_idx [function] [call site] 03111
9 sub_idx [function] [call site] 03112
9 sub_idx [function] [call site] 03113
9 sub_idx [function] [call site] 03114
9 sub_idx [function] [call site] 03115
9 block_append [function] [call site] 03116
9 block_append [function] [call site] 03117
9 hts_log [function] [call site] 03118
9 block_append [function] [call site] 03119
9 block_append [function] [call site] 03120
9 block_append [function] [call site] 03121
9 hts_log [function] [call site] 03122
9 cram_free_block [function] [call site] 03123
8 cram_ref_decr [function] [call site] 03124
8 cram_ref_decr [function] [call site] 03125
7 cram_flush_container2 [function] [call site] 03126
8 htell [function] [call site] 03127
8 cram_write_container [function] [call site] 03128
9 itf8_put [function] [call site] 03129
9 crc32 [call site] 03130
9 hwrite [function] [call site] 03131
8 htell [function] [call site] 03132
8 cram_write_block [function] [call site] 03133
9 __assert_fail [call site] 03134
9 hputc [function] [call site] 03135
10 hputc2 [function] [call site] 03136
11 flush_buffer [function] [call site] 03137
9 hputc [function] [call site] 03138
9 hwrite [function] [call site] 03139
9 hwrite [function] [call site] 03140
9 hwrite [function] [call site] 03141
9 __assert_fail [call site] 03142
9 crc32 [call site] 03143
9 int32_encode [function] [call site] 03144
10 hwrite [function] [call site] 03145
8 htell [function] [call site] 03146
8 cram_write_block [function] [call site] 03147
8 cram_write_block [function] [call site] 03148
8 htell [function] [call site] 03149
8 cram_index_slice [function] [call site] 03150
9 hts_log [function] [call site] 03151
9 cram_index_build_multiref [function] [call site] 03152
10 cram_decode_slice [function] [call site] 03153
11 cram_dependent_data_series [function] [call site] 03154
12 cram_uncompress_block [function] [call site] 03155
12 cram_uncompress_block [function] [call site] 03156
12 cram_codec_to_id [function] [call site] 03157
13 cram_codec_to_id [function] [call site] 03158
14 cram_codec_to_id [function] [call site] 03159
15 hts_log [function] [call site] 03160
12 cram_uncompress_block [function] [call site] 03161
12 cram_codec_to_id [function] [call site] 03162
12 cram_uncompress_block [function] [call site] 03163
12 cram_codec_to_id [function] [call site] 03164
12 cram_codec_to_id [function] [call site] 03165
11 cram_decode_estimate_sizes [function] [call site] 03166
12 cram_codec_to_id [function] [call site] 03167
12 cram_ds_unique [function] [call site] 03168
13 cram_codec_to_id [function] [call site] 03169
12 cram_get_block_by_id [function] [call site] 03170
12 cram_codec_to_id [function] [call site] 03171
12 cram_ds_unique [function] [call site] 03172
12 cram_get_block_by_id [function] [call site] 03173
11 block_resize_exact [function] [call site] 03174
11 block_resize_exact [function] [call site] 03175
11 block_resize_exact [function] [call site] 03176
11 strcmp [call site] 03177
11 hts_log [function] [call site] 03178
11 cram_get_block_by_id [function] [call site] 03179
11 cram_uncompress_block [function] [call site] 03180
11 hts_log [function] [call site] 03181
11 cram_get_ref [function] [call site] 03182
11 hts_log [function] [call site] 03183
11 pthread_mutex_lock [call site] 03184
11 pthread_mutex_lock [call site] 03185
11 pthread_mutex_unlock [call site] 03186
11 hts_log [function] [call site] 03187
11 memcmp [call site] 03188
11 hts_log [function] [call site] 03189
11 hts_log [function] [call site] 03190
11 hts_md5_init [function] [call site] 03191
11 hts_md5_update [function] [call site] 03192
11 hts_md5_final [function] [call site] 03193
11 hts_md5_destroy [function] [call site] 03194
11 cram_get_block_by_id [function] [call site] 03195
11 hts_md5_init [function] [call site] 03196
11 hts_md5_update [function] [call site] 03197
11 hts_md5_final [function] [call site] 03198
11 hts_md5_destroy [function] [call site] 03199
11 sam_hdr_tid2name [function] [call site] 03200
11 hts_log [function] [call site] 03201
11 md5_print [function] [call site] 03202
11 hts_log [function] [call site] 03203
11 md5_print [function] [call site] 03204
11 hts_log [function] [call site] 03205
11 sam_hdr_find_tag_id [function] [call site] 03206
12 sam_hdr_fill_hrecs [function] [call site] 03207
12 sam_hrecs_find_type_id [function] [call site] 03208
12 sam_hrecs_find_key [function] [call site] 03209
12 kputsn [function] [call site] 03210
11 hts_log [function] [call site] 03211
11 hts_log [function] [call site] 03212
11 ks_free [function] [call site] 03213
11 pthread_mutex_lock [call site] 03214
11 calloc [call site] 03215
11 pthread_mutex_unlock [call site] 03216
11 pthread_mutex_unlock [call site] 03217
11 pthread_mutex_lock [call site] 03218
11 cram_get_ref [function] [call site] 03219
11 pthread_mutex_lock [call site] 03220
11 pthread_mutex_unlock [call site] 03221
11 pthread_mutex_lock [call site] 03222
11 pthread_mutex_unlock [call site] 03223
11 cram_ref_decr [function] [call site] 03224
11 pthread_mutex_lock [call site] 03225
11 pthread_mutex_lock [call site] 03226
11 pthread_mutex_unlock [call site] 03227
11 pthread_mutex_unlock [call site] 03228
11 hts_log [function] [call site] 03229
11 hts_log [function] [call site] 03230
11 pthread_mutex_lock [call site] 03231
11 pthread_mutex_unlock [call site] 03232
11 cram_decode_tlen [function] [call site] 03233
11 cram_decode_tlen [function] [call site] 03234
11 cram_decode_tlen [function] [call site] 03235
11 cram_decode_aux_1_0 [function] [call site] 03236
12 map_find [function] [call site] 03237
12 block_append [function] [call site] 03238
11 cram_decode_aux [function] [call site] 03239
12 strlen [call site] 03240
12 sam_hdr_line_name [function] [call site] 03241
13 sam_hdr_fill_hrecs [function] [call site] 03242
13 hts_log [function] [call site] 03243
13 hts_log [function] [call site] 03244
13 hts_log [function] [call site] 03245
12 strlen [call site] 03246
12 block_append [function] [call site] 03247
12 block_append [function] [call site] 03248
12 block_append_char [function] [call site] 03249
12 block_append [function] [call site] 03250
12 map_find [function] [call site] 03251
12 block_append [function] [call site] 03252
11 block_grow [function] [call site] 03253
11 block_grow [function] [call site] 03254
11 hts_log [function] [call site] 03255
11 cram_decode_seq [function] [call site] 03256
12 block_append [function] [call site] 03257
12 realloc [call site] 03258
12 hts_log [function] [call site] 03259
12 hts_log [function] [call site] 03260
12 add_md_char [function] [call site] 03261
13 block_append_uint [function] [call site] 03262
14 block_grow [function] [call site] 03263
14 append_uint32 [function] [call site] 03264
13 block_append_char [function] [call site] 03265
12 block_append_uint [function] [call site] 03266
12 add_md_char [function] [call site] 03267
12 block_append_uint [function] [call site] 03268
12 block_append_char [function] [call site] 03269
12 block_append [function] [call site] 03270
12 block_append_char [function] [call site] 03271
12 block_append [function] [call site] 03272
12 block_append_uint [function] [call site] 03273
12 block_append_uint [function] [call site] 03274
12 block_append_uint [function] [call site] 03275
12 block_append_char [function] [call site] 03276
12 block_append_uint [function] [call site] 03277
12 block_append_char [function] [call site] 03278
12 hts_log [function] [call site] 03279
12 memchr [call site] 03280
12 add_md_char [function] [call site] 03281
12 realloc [call site] 03282
12 block_append_uint [function] [call site] 03283
12 realloc [call site] 03284
12 block_append_char [function] [call site] 03285
12 block_append [function] [call site] 03286
12 hts_log [function] [call site] 03287
11 pthread_mutex_lock [call site] 03288
11 cram_ref_decr [function] [call site] 03289
11 cram_ref_decr [function] [call site] 03290
11 pthread_mutex_unlock [call site] 03291
11 cram_decode_slice_xref [function] [call site] 03292
12 hts_log [function] [call site] 03293
11 block_resize_exact [function] [call site] 03294
11 block_resize_exact [function] [call site] 03295
11 block_resize_exact [function] [call site] 03296
11 block_resize_exact [function] [call site] 03297
11 pthread_mutex_lock [call site] 03298
11 cram_ref_decr [function] [call site] 03299
11 pthread_mutex_unlock [call site] 03300
10 hts_log [function] [call site] 03301
10 strlen [call site] 03302
10 bgzf_write [function] [call site] 03303
11 hwrite [function] [call site] 03304
11 __assert_fail [call site] 03305
11 lazy_flush [function] [call site] 03306
12 mt_queue [function] [call site] 03307
12 bgzf_flush [function] [call site] 03308
10 strlen [call site] 03309
10 bgzf_write [function] [call site] 03310
9 sprintf [call site] 03311
9 bgzf_write [function] [call site] 03312
6 __errno_location [call site] 03313
6 hts_tpool_dispatch2 [function] [call site] 03314
7 hts_tpool_dispatch3 [function] [call site] 03315
6 cram_flush_thread [function] [call site] 03316
7 cram_encode_container [function] [call site] 03317
7 hts_log [function] [call site] 03318
6 __errno_location [call site] 03319
6 cram_flush_result [function] [call site] 03320
7 hts_tpool_next_result [function] [call site] 03321
8 hts_tpool_next_result_locked [function] [call site] 03322
7 hts_tpool_result_data [function] [call site] 03323
7 hts_tpool_delete_result [function] [call site] 03324
7 cram_flush_container2 [function] [call site] 03325
7 cram_free_slice [function] [call site] 03326
7 cram_free_slice [function] [call site] 03327
7 cram_free_container [function] [call site] 03328
7 hts_tpool_delete_result [function] [call site] 03329
7 cram_free_container [function] [call site] 03330
6 usleep [call site] 03331
5 cram_drain_rqueue [function] [call site] 03332
5 hts_tpool_process_flush [function] [call site] 03333
5 cram_flush_result [function] [call site] 03334
5 pthread_mutex_destroy [call site] 03335
5 pthread_mutex_destroy [call site] 03336
5 pthread_mutex_destroy [call site] 03337
5 hts_tpool_process_destroy [function] [call site] 03338
5 cram_write_eof_block [function] [call site] 03339
6 cram_encode_compression_header [function] [call site] 03340
6 cram_write_container [function] [call site] 03341
6 cram_write_block [function] [call site] 03342
6 cram_close [function] [call site] 03343
7 bam_destroy1 [function] [call site] 03344
8 bam_get_mempolicy [function] [call site] 03345
8 bam_get_mempolicy [function] [call site] 03346
8 bam_get_mempolicy [function] [call site] 03347
7 hclose [function] [call site] 03348
7 cram_free_file_def [function] [call site] 03349
7 sam_hdr_destroy [function] [call site] 03350
7 cram_free_container [function] [call site] 03351
7 cram_free_container [function] [call site] 03352
7 refs_free [function] [call site] 03353
7 kh_destroy_m_metrics [function] [call site] 03354
7 cram_index_free [function] [call site] 03355
8 cram_index_free_recurse [function] [call site] 03356
9 cram_index_free_recurse [function] [call site] 03357
7 hts_tpool_destroy [function] [call site] 03358
7 bgzf_close [function] [call site] 03359
6 cram_free_block [function] [call site] 03360
6 kh_destroy_map [function] [call site] 03361
6 cram_free_block [function] [call site] 03362
4 sam_state_destroy [function] [call site] 03363
4 fastq_state_destroy [function] [call site] 03364
5 kh_destroy_tag [function] [call site] 03365
5 ks_free [function] [call site] 03366
5 ks_free [function] [call site] 03367
5 ks_free [function] [call site] 03368
4 bgzf_close [function] [call site] 03369
4 hclose [function] [call site] 03370
4 __errno_location [call site] 03371
4 sam_hdr_destroy [function] [call site] 03372
4 hts_idx_destroy [function] [call site] 03373
5 cram_index_free [function] [call site] 03374
5 kh_destroy_bin [function] [call site] 03375
4 hts_filter_free [function] [call site] 03376
4 __errno_location [call site] 03377
3 abort [call site] 03378
2 sam_hdr_count_lines [function] [call site] 03379
3 sam_hdr_fill_hrecs [function] [call site] 03380
3 sam_hrecs_find_type_id [function] [call site] 03381
2 sam_hdr_write [function] [call site] 03382
3 __errno_location [call site] 03383
3 bam_hdr_write [function] [call site] 03384
4 sam_hrecs_rebuild_text [function] [call site] 03385
4 hts_log [function] [call site] 03386
4 hts_log [function] [call site] 03387
4 hts_log [function] [call site] 03388
4 hts_log [function] [call site] 03389
4 hts_log [function] [call site] 03390
4 hts_log [function] [call site] 03391
4 bgzf_write [function] [call site] 03392
4 ed_swap_4 [function] [call site] 03393
4 bgzf_write [function] [call site] 03394
4 bgzf_write [function] [call site] 03395
4 ed_swap_4 [function] [call site] 03396
4 bgzf_write [function] [call site] 03397
4 bgzf_write [function] [call site] 03398
4 bgzf_write [function] [call site] 03399
4 bgzf_write [function] [call site] 03400
4 ed_swap_4 [function] [call site] 03401
4 bgzf_write [function] [call site] 03402
4 bgzf_write [function] [call site] 03403
4 bgzf_write [function] [call site] 03404
4 ed_swap_4 [function] [call site] 03405
4 bgzf_write [function] [call site] 03406
4 bgzf_write [function] [call site] 03407
4 bgzf_flush [function] [call site] 03408
3 cram_set_header2 [function] [call site] 03409
4 sam_hdr_destroy [function] [call site] 03410
4 sam_hdr_dup [function] [call site] 03411
4 refs_from_header [function] [call site] 03412
3 cram_load_reference [function] [call site] 03413
3 cram_write_SAM_hdr [function] [call site] 03414
4 cram_write_file_def [function] [call site] 03415
5 hwrite [function] [call site] 03416
4 sam_hrecs_find_rg [function] [call site] 03417
4 sam_hdr_add_line [function] [call site] 03418
5 sam_hdr_fill_hrecs [function] [call site] 03419
5 sam_hrecs_vadd [function] [call site] 03420
5 rebuild_target_arrays [function] [call site] 03421
5 redact_header_text [function] [call site] 03422
4 refs_from_header [function] [call site] 03423
4 refs2id [function] [call site] 03424
4 sam_hrecs_find_type_id [function] [call site] 03425
4 sam_hrecs_find_key [function] [call site] 03426
4 cram_get_ref [function] [call site] 03427
4 hts_log [function] [call site] 03428
4 hts_log [function] [call site] 03429
4 hts_log [function] [call site] 03430
4 pthread_mutex_lock [call site] 03431
4 pthread_mutex_unlock [call site] 03432
4 hts_md5_init [function] [call site] 03433
4 hts_md5_update [function] [call site] 03434
4 hts_md5_final [function] [call site] 03435
4 hts_md5_destroy [function] [call site] 03436
4 cram_ref_decr [function] [call site] 03437
4 hts_md5_hex [function] [call site] 03438
4 sam_hdr_update_line [function] [call site] 03439
5 sam_hdr_fill_hrecs [function] [call site] 03440
5 sam_hrecs_find_type_id [function] [call site] 03441
5 check_for_name_update [function] [call site] 03442
6 TYPEKEY [function] [call site] 03443
6 TYPEKEY [function] [call site] 03444
6 TYPEKEY [function] [call site] 03445
6 sam_hrecs_find_key [function] [call site] 03446
6 kh_get_m_s2i [function] [call site] 03447
5 hts_log [function] [call site] 03448
5 TYPEKEY [function] [call site] 03449
5 hts_log [function] [call site] 03450
5 sam_hrecs_vupdate [function] [call site] 03451
5 kh_get_m_s2i [function] [call site] 03452
5 sam_hrecs_find_key [function] [call site] 03453
5 __assert_fail [call site] 03454
5 __assert_fail [call site] 03455
5 __assert_fail [call site] 03456
5 kh_del_m_s2i [function] [call site] 03457
5 kh_put_m_s2i [function] [call site] 03458
5 hts_log [function] [call site] 03459
5 TYPEKEY [function] [call site] 03460
5 sam_hrecs_update_hashes [function] [call site] 03461
5 rebuild_target_arrays [function] [call site] 03462
5 redact_header_text [function] [call site] 03463
4 full_path [function] [call site] 03464
5 strlen [call site] 03465
5 hisremote [function] [call site] 03466
5 hts_log [function] [call site] 03467
5 strncpy [call site] 03468
5 toupper_c [function] [call site] 03469
5 strncpy [call site] 03470
5 getcwd [call site] 03471
5 strlen [call site] 03472
5 strncpy [call site] 03473
5 sprintf [call site] 03474
4 sam_hdr_update_line [function] [call site] 03475
4 sam_hdr_length [function] [call site] 03476
5 sam_hdr_rebuild [function] [call site] 03477
6 rebuild_target_arrays [function] [call site] 03478
6 hts_log [function] [call site] 03479
6 sam_hdr_link_pg [function] [call site] 03480
7 sam_hdr_fill_hrecs [function] [call site] 03481
7 realloc [call site] 03482
7 calloc [call site] 03483
7 __assert_fail [call site] 03484
7 kh_get_m_s2i [function] [call site] 03485
7 hts_log [function] [call site] 03486
7 redact_header_text [function] [call site] 03487
6 sam_hrecs_rebuild_text [function] [call site] 03488
6 ks_free [function] [call site] 03489
6 hts_log [function] [call site] 03490
6 ks_len [function] [call site] 03491
6 ks_release [function] [call site] 03492
4 hts_log [function] [call site] 03493
4 int32_encode [function] [call site] 03494
4 sam_hdr_str [function] [call site] 03495
5 sam_hdr_rebuild [function] [call site] 03496
4 hwrite [function] [call site] 03497
4 cram_new_block [function] [call site] 03498
4 cram_new_container [function] [call site] 03499
5 calloc [call site] 03500
5 calloc [call site] 03501
5 cram_new_compression_header [function] [call site] 03502
6 calloc [call site] 03503
6 cram_new_block [function] [call site] 03504
6 kh_init_m_s2i [function] [call site] 03505
6 cram_free_block [function] [call site] 03506
6 string_pool_create [function] [call site] 03507
6 kh_destroy_m_s2i [function] [call site] 03508
6 cram_free_block [function] [call site] 03509
5 cram_stats_create [function] [call site] 03510
6 calloc [call site] 03511
5 kh_init_m_tagmap [function] [call site] 03512
4 cram_free_block [function] [call site] 03513
4 cram_free_container [function] [call site] 03514
4 int32_put_blk [function] [call site] 03515
5 block_append [function] [call site] 03516
4 sam_hdr_str [function] [call site] 03517
4 block_append [function] [call site] 03518
4 cram_compress_block [function] [call site] 03519
5 cram_compress_block2 [function] [call site] 03520
4 cram_free_block [function] [call site] 03521
4 cram_free_container [function] [call site] 03522
4 calloc [call site] 03523
4 cram_free_block [function] [call site] 03524
4 cram_free_container [function] [call site] 03525
4 block_append [function] [call site] 03526
4 cram_write_container [function] [call site] 03527
4 cram_free_block [function] [call site] 03528
4 cram_free_container [function] [call site] 03529
4 cram_write_block [function] [call site] 03530
4 cram_free_block [function] [call site] 03531
4 cram_free_container [function] [call site] 03532
4 block_resize [function] [call site] 03533
4 cram_write_block [function] [call site] 03534
4 cram_free_block [function] [call site] 03535
4 cram_free_container [function] [call site] 03536
4 cram_free_block [function] [call site] 03537
4 cram_free_container [function] [call site] 03538
4 hflush [function] [call site] 03539
3 sam_hrecs_rebuild_text [function] [call site] 03540
3 strstr [call site] 03541
3 bgzf_write [function] [call site] 03542
3 hwrite [function] [call site] 03543
3 kputsn [function] [call site] 03544
3 kputs [function] [call site] 03545
3 kputsn [function] [call site] 03546
3 kputw [function] [call site] 03547
3 kputc [function] [call site] 03548
3 bgzf_write [function] [call site] 03549
3 hwrite [function] [call site] 03550
3 bgzf_flush [function] [call site] 03551
3 hflush [function] [call site] 03552
3 __errno_location [call site] 03553
2 sam_hdr_destroy [function] [call site] 03554
2 hts_close_or_abort [function] [call site] 03555
2 bam_init1 [function] [call site] 03556
3 calloc [call site] 03557
2 sam_hdr_destroy [function] [call site] 03558
2 hts_close_or_abort [function] [call site] 03559
2 sam_read1 [function] [call site] 03560
3 sam_read1_bam [function] [call site] 03561
4 bam_read1 [function] [call site] 03562
5 bgzf_read [function] [call site] 03563
5 ed_swap_4p [function] [call site] 03564
5 bgzf_read [function] [call site] 03565
5 ed_swap_4p [function] [call site] 03566
5 realloc_bam_data [function] [call site] 03567
6 sam_realloc_bam_data [function] [call site] 03568
7 __errno_location [call site] 03569
7 bam_get_mempolicy [function] [call site] 03570
7 realloc [call site] 03571
7 bam_get_mempolicy [function] [call site] 03572
5 bgzf_read [function] [call site] 03573
5 fixup_missing_qname_nul [function] [call site] 03574
6 realloc_bam_data [function] [call site] 03575
5 bgzf_read [function] [call site] 03576
5 swap_data [function] [call site] 03577
6 ed_swap_4p [function] [call site] 03578
5 bam_tag2cigar [function] [call site] 03579
6 bam_aux_get [function] [call site] 03580
6 __errno_location [call site] 03581
6 le_to_u32 [function] [call site] 03582
6 possibly_expand_bam_data [function] [call site] 03583
7 __errno_location [call site] 03584
7 sam_realloc_bam_data [function] [call site] 03585
6 bam_endpos [function] [call site] 03586
7 bam_cigar2rlen [function] [call site] 03587
6 hts_reg2bin [function] [call site] 03588
6 hts_log [function] [call site] 03589
5 bam_cigar2rqlens [function] [call site] 03590
5 hts_reg2bin [function] [call site] 03591
5 hts_log [function] [call site] 03592
4 __errno_location [call site] 03593
3 sam_read1_cram [function] [call site] 03594
4 cram_get_bam_seq [function] [call site] 03595
5 cram_get_seq [function] [call site] 03596
6 cram_next_slice [function] [call site] 03597
7 cram_first_slice [function] [call site] 03598
8 cram_free_container [function] [call site] 03599
8 cram_read_container [function] [call site] 03600
8 cram_seek [function] [call site] 03601
8 cram_free_container [function] [call site] 03602
8 cram_read_container [function] [call site] 03603
8 cram_read_block [function] [call site] 03604
8 cram_decode_compression_header [function] [call site] 03605
9 calloc [call site] 03606
9 cram_uncompress_block [function] [call site] 03607
9 kh_init_map [function] [call site] 03608
9 cram_free_compression_header [function] [call site] 03609
9 cram_free_compression_header [function] [call site] 03610
9 kh_put_map [function] [call site] 03611
9 cram_free_compression_header [function] [call site] 03612
9 kh_put_map [function] [call site] 03613
9 cram_free_compression_header [function] [call site] 03614
9 kh_put_map [function] [call site] 03615
9 cram_free_compression_header [function] [call site] 03616
9 kh_put_map [function] [call site] 03617
9 cram_free_compression_header [function] [call site] 03618
9 cram_free_compression_header [function] [call site] 03619
9 kh_put_map [function] [call site] 03620
9 cram_free_compression_header [function] [call site] 03621
9 cram_decode_TD [function] [call site] 03622
10 cram_new_block [function] [call site] 03623
10 hts_log [function] [call site] 03624
10 cram_free_block [function] [call site] 03625
10 cram_free_block [function] [call site] 03626
10 cram_free_block [function] [call site] 03627
10 block_append [function] [call site] 03628
10 block_append_char [function] [call site] 03629
10 calloc [call site] 03630
10 cram_free_block [function] [call site] 03631
10 cram_free_block [function] [call site] 03632
9 cram_free_compression_header [function] [call site] 03633
9 kh_put_map [function] [call site] 03634
9 cram_free_compression_header [function] [call site] 03635
9 cram_free_compression_header [function] [call site] 03636
9 cram_free_compression_header [function] [call site] 03637
9 cram_free_compression_header [function] [call site] 03638
9 hts_log [function] [call site] 03639
9 hts_log [function] [call site] 03640
9 cram_decoder_init [function] [call site] 03641
10 cram_encoding2str [function] [call site] 03642
10 hts_log [function] [call site] 03643
9 cram_free_compression_header [function] [call site] 03644
9 cram_free_compression_header [function] [call site] 03645
9 cram_free_compression_header [function] [call site] 03646
9 cram_free_compression_header [function] [call site] 03647
9 cram_decoder_init [function] [call site] 03648
9 cram_free_compression_header [function] [call site] 03649
9 cram_free_compression_header [function] [call site] 03650
8 sam_hrecs_sort_order [function] [call site] 03651
9 TYPEKEY [function] [call site] 03652
9 strcmp [call site] 03653
9 strcmp [call site] 03654
9 strcmp [call site] 03655
9 strcmp [call site] 03656
9 hts_log [function] [call site] 03657
8 pthread_mutex_lock [call site] 03658
8 pthread_mutex_unlock [call site] 03659
7 cram_free_slice [function] [call site] 03660
7 cram_free_container [function] [call site] 03661
7 cram_read_container [function] [call site] 03662
7 cram_free_container [function] [call site] 03663
7 cram_free_container [function] [call site] 03664
7 cram_free_container [function] [call site] 03665
7 cram_seek [function] [call site] 03666
7 cram_free_container [function] [call site] 03667
7 cram_read_block [function] [call site] 03668
7 cram_decode_compression_header [function] [call site] 03669
7 sam_hrecs_sort_order [function] [call site] 03670
7 pthread_mutex_lock [call site] 03671
7 pthread_mutex_unlock [call site] 03672
7 cram_free_container [function] [call site] 03673
7 cram_read_slice [function] [call site] 03674
8 cram_read_block [function] [call site] 03675
8 calloc [call site] 03676
8 cram_decode_slice_header [function] [call site] 03677
9 cram_uncompress_block [function] [call site] 03678
9 calloc [call site] 03679
9 hts_log [function] [call site] 03680
8 cram_content_type2str [function] [call site] 03681
8 hts_log [function] [call site] 03682
8 hts_log [function] [call site] 03683
8 calloc [call site] 03684
8 cram_read_block [function] [call site] 03685
8 calloc [call site] 03686
8 cram_new_block [function] [call site] 03687
8 cram_new_block [function] [call site] 03688
8 cram_new_block [function] [call site] 03689
8 cram_new_block [function] [call site] 03690
8 cram_new_block [function] [call site] 03691
8 cram_new_block [function] [call site] 03692
8 cram_free_block [function] [call site] 03693
8 cram_free_slice [function] [call site] 03694
7 cram_free_slice [function] [call site] 03695
7 cram_free_slice [function] [call site] 03696
7 cram_free_slice [function] [call site] 03697
7 cram_decode_slice_mt [function] [call site] 03698
8 cram_decode_slice [function] [call site] 03699
8 hts_tpool_process_sz [function] [call site] 03700
8 __errno_location [call site] 03701
8 __errno_location [call site] 03702
8 hts_tpool_dispatch2 [function] [call site] 03703
8 cram_decode_slice_thread [function] [call site] 03704
9 cram_decode_slice [function] [call site] 03705
8 __errno_location [call site] 03706
7 hts_log [function] [call site] 03707
7 cram_free_slice [function] [call site] 03708
7 hts_tpool_process_len [function] [call site] 03709
7 hts_tpool_process_qsize [function] [call site] 03710
7 hts_tpool_process_empty [function] [call site] 03711
7 hts_tpool_next_result_wait [function] [call site] 03712
7 hts_tpool_result_data [function] [call site] 03713
7 hts_log [function] [call site] 03714
7 hts_tpool_result_data [function] [call site] 03715
7 hts_log [function] [call site] 03716
7 hts_tpool_delete_result [function] [call site] 03717
7 hts_tpool_delete_result [function] [call site] 03718
6 cram_free_slice [function] [call site] 03719
6 cram_free_slice [function] [call site] 03720
5 cram_to_bam [function] [call site] 03721
6 strlen [call site] 03722
6 append_uint64 [function] [call site] 03723
7 append_uint32 [function] [call site] 03724
7 append_uint32 [function] [call site] 03725
7 append_sub32 [function] [call site] 03726
7 append_uint32 [function] [call site] 03727
7 append_sub32 [function] [call site] 03728
6 append_uint64 [function] [call site] 03729
6 bam_set1 [function] [call site] 03730
7 bam_cigar2rqlens [function] [call site] 03731
7 hts_log [function] [call site] 03732
7 __errno_location [call site] 03733
7 hts_log [function] [call site] 03734
7 __errno_location [call site] 03735
7 hts_log [function] [call site] 03736
7 __errno_location [call site] 03737
7 subtract_check_underflow [function] [call site] 03738
7 subtract_check_underflow [function] [call site] 03739
7 subtract_check_underflow [function] [call site] 03740
7 subtract_check_underflow [function] [call site] 03741
7 subtract_check_underflow [function] [call site] 03742
7 realloc_bam_data [function] [call site] 03743
7 hts_reg2bin [function] [call site] 03744
7 strncpy [call site] 03745
4 cram_eof [function] [call site] 03746
4 bam_tag2cigar [function] [call site] 03747
3 sam_read1_sam [function] [call site] 03748
4 sam_parse1 [function] [call site] 03749
5 strchr [call site] 03750
5 hts_log [function] [call site] 03751
5 hts_log [function] [call site] 03752
5 possibly_expand_bam_data [function] [call site] 03753
5 parse_sam_flag [function] [call site] 03754
6 hts_str2uint [function] [call site] 03755
6 strtoul [call site] 03756
5 strchr [call site] 03757
5 hts_log [function] [call site] 03758
5 bam_name2id [function] [call site] 03759
6 sam_hdr_name2tid [function] [call site] 03760
7 sam_hdr_fill_hrecs [function] [call site] 03761
7 kh_get_m_s2i [function] [call site] 03762
5 hts_log [function] [call site] 03763
5 hts_strprint [function] [call site] 03764
6 isprint_c [function] [call site] 03765
7 __ctype_b_loc [call site] 03766
5 hts_log [function] [call site] 03767
5 hts_str2uint [function] [call site] 03768
5 hts_log [function] [call site] 03769
5 hts_str2uint [function] [call site] 03770
5 bam_parse_cigar [function] [call site] 03771
6 hts_log [function] [call site] 03772
6 read_ncigar [function] [call site] 03773
7 isdigit_c [function] [call site] 03774
7 hts_log [function] [call site] 03775
7 hts_log [function] [call site] 03776
6 possibly_expand_bam_data [function] [call site] 03777
6 hts_log [function] [call site] 03778
6 parse_cigar [function] [call site] 03779
7 hts_str2uint [function] [call site] 03780
7 hts_log [function] [call site] 03781
7 hts_log [function] [call site] 03782
7 hts_log [function] [call site] 03783
5 bam_cigar2rlen [function] [call site] 03784
5 hts_log [function] [call site] 03785
5 strchr [call site] 03786
5 hts_log [function] [call site] 03787
5 hts_reg2bin [function] [call site] 03788
5 strchr [call site] 03789
5 strcmp [call site] 03790
5 strcmp [call site] 03791
5 bam_name2id [function] [call site] 03792
5 hts_log [function] [call site] 03793
5 hts_strprint [function] [call site] 03794
5 hts_log [function] [call site] 03795
5 hts_str2uint [function] [call site] 03796
5 hts_log [function] [call site] 03797
5 hts_str2int [function] [call site] 03798
5 strchr [call site] 03799
5 strcmp [call site] 03800
5 hts_log [function] [call site] 03801
5 bam_cigar2qlen [function] [call site] 03802
5 hts_log [function] [call site] 03803
5 possibly_expand_bam_data [function] [call site] 03804
5 possibly_expand_bam_data [function] [call site] 03805
5 hts_log [function] [call site] 03806
5 hts_log [function] [call site] 03807
5 aux_parse [function] [call site] 03808
6 hts_log [function] [call site] 03809
6 isspace_c [function] [call site] 03810
6 hts_log [function] [call site] 03811
6 isspace_c [function] [call site] 03812
6 isspace_c [function] [call site] 03813
6 kh_get_tag [function] [call site] 03814
6 possibly_expand_bam_data [function] [call site] 03815
6 isspace_c [function] [call site] 03816
6 hts_log [function] [call site] 03817
6 possibly_expand_bam_data [function] [call site] 03818
6 hts_str2int [function] [call site] 03819
6 i16_to_le [function] [call site] 03820
7 u16_to_le [function] [call site] 03821
6 i32_to_le [function] [call site] 03822
7 u32_to_le [function] [call site] 03823
6 hts_str2uint [function] [call site] 03824
6 u16_to_le [function] [call site] 03825
6 u32_to_le [function] [call site] 03826
6 strtod [call site] 03827
6 float_to_le [function] [call site] 03828
7 u32_to_le [function] [call site] 03829
6 strtod [call site] 03830
6 double_to_le [function] [call site] 03831
7 u64_to_le [function] [call site] 03832
6 strchr [call site] 03833
6 strlen [call site] 03834
6 isspace_c [function] [call site] 03835
6 hts_log [function] [call site] 03836
6 possibly_expand_bam_data [function] [call site] 03837
6 isspace_c [function] [call site] 03838
6 hts_log [function] [call site] 03839
6 sam_parse_B_vals [function] [call site] 03840
7 aux_type2size [function] [call site] 03841
7 hts_log [function] [call site] 03842
7 possibly_expand_bam_data [function] [call site] 03843
7 hts_log [function] [call site] 03844
7 i32_to_le [function] [call site] 03845
7 hts_str2int [function] [call site] 03846
7 hts_str2uint [function] [call site] 03847
7 hts_str2int [function] [call site] 03848
7 i16_to_le [function] [call site] 03849
7 hts_str2uint [function] [call site] 03850
7 u16_to_le [function] [call site] 03851
7 hts_str2int [function] [call site] 03852
7 i32_to_le [function] [call site] 03853
7 hts_str2uint [function] [call site] 03854
7 u32_to_le [function] [call site] 03855
7 strtod [call site] 03856
7 float_to_le [function] [call site] 03857
7 hts_log [function] [call site] 03858
7 hts_str2int [function] [call site] 03859
7 sam_parse_B_vals [function] [call site] 03860
8 sam_parse_B_vals [function] [call site] 03861
9 sam_parse_B_vals [function] [call site] 03862
10 sam_parse_B_vals [function] [call site] 03863
11 sam_parse_B_vals [function] [call site] 03864
12 sam_parse_B_vals [function] [call site] 03865
13 hts_log [function] [call site] 03866
6 isspace_c [function] [call site] 03867
6 hts_strprint [function] [call site] 03868
6 hts_log [function] [call site] 03869
6 isspace_c [function] [call site] 03870
6 hts_log [function] [call site] 03871
5 bam_tag2cigar [function] [call site] 03872
4 sam_state_destroy [function] [call site] 03873
4 __errno_location [call site] 03874
4 bgzf_seek [function] [call site] 03875
5 bgzf_seek_common [function] [call site] 03876
4 sam_hdr_fill_hrecs [function] [call site] 03877
4 pthread_create [call site] 03878
4 sam_dispatcher_read [function] [call site] 03879
5 ks_resize [function] [call site] 03880
5 pthread_mutex_lock [call site] 03881
5 pthread_cond_signal [call site] 03882
5 pthread_mutex_unlock [call site] 03883
5 hts_tpool_process_shutdown [function] [call site] 03884
5 pthread_mutex_lock [call site] 03885
5 pthread_mutex_unlock [call site] 03886
5 calloc [call site] 03887
5 realloc [call site] 03888
5 bgzf_read [function] [call site] 03889
5 hread [function] [call site] 03890
5 __errno_location [call site] 03891
5 sam_state_err [function] [call site] 03892
5 realloc [call site] 03893
5 __assert_fail [call site] 03894
5 __assert_fail [call site] 03895
5 __assert_fail [call site] 03896
5 ks_resize [function] [call site] 03897
5 hts_tpool_dispatch3 [function] [call site] 03898
5 sam_parse_worker [function] [call site] 03899
6 pthread_mutex_lock [call site] 03900
6 pthread_mutex_unlock [call site] 03901
6 calloc [call site] 03902
6 calloc [call site] 03903
6 sam_state_err [function] [call site] 03904
6 sam_state_err [function] [call site] 03905
6 realloc [call site] 03906
6 sam_state_err [function] [call site] 03907
6 strchr [call site] 03908
6 sam_parse1 [function] [call site] 03909
6 __errno_location [call site] 03910
6 sam_state_err [function] [call site] 03911
6 cleanup_sp_lines [function] [call site] 03912
7 __assert_fail [call site] 03913
7 sam_free_sp_bams [function] [call site] 03914
6 pthread_mutex_lock [call site] 03915
6 pthread_mutex_unlock [call site] 03916
6 sam_free_sp_bams [function] [call site] 03917
5 pthread_mutex_lock [call site] 03918
5 pthread_mutex_unlock [call site] 03919
5 pthread_mutex_unlock [call site] 03920
5 sam_parse_eof [function] [call site] 03921
5 pthread_mutex_lock [call site] 03922
5 pthread_cond_wait [call site] 03923
5 pthread_cond_signal [call site] 03924
5 pthread_mutex_unlock [call site] 03925
5 hts_tpool_process_shutdown [function] [call site] 03926
5 pthread_mutex_unlock [call site] 03927
5 pthread_mutex_lock [call site] 03928
5 pthread_cond_signal [call site] 03929
5 pthread_mutex_unlock [call site] 03930
5 pthread_mutex_lock [call site] 03931
5 pthread_mutex_unlock [call site] 03932
5 __errno_location [call site] 03933
5 sam_state_err [function] [call site] 03934
5 hts_tpool_process_shutdown [function] [call site] 03935
4 hts_log [function] [call site] 03936
4 __errno_location [call site] 03937
4 hts_tpool_next_result_wait [function] [call site] 03938
4 hts_tpool_result_data [function] [call site] 03939
4 hts_tpool_delete_result [function] [call site] 03940
4 bam_copy1 [function] [call site] 03941
5 realloc_bam_data [function] [call site] 03942
4 pthread_mutex_lock [call site] 03943
4 pthread_mutex_unlock [call site] 03944
4 hts_getline [function] [call site] 03945
4 sam_parse1 [function] [call site] 03946
4 hts_log [function] [call site] 03947
3 fastq_state_init [function] [call site] 03948
3 fastq_parse1 [function] [call site] 03949
4 hts_getline [function] [call site] 03950
4 strpbrk [call site] 03951
4 isspace_c [function] [call site] 03952
4 isspace_c [function] [call site] 03953
4 hts_getline [function] [call site] 03954
4 kputsn [function] [call site] 03955
4 hts_getline [function] [call site] 03956
4 kputsn [function] [call site] 03957
4 isdigit_c [function] [call site] 03958
4 bam_set1 [function] [call site] 03959
4 isdigit_c [function] [call site] 03960
4 strtol [call site] 03961
4 isdigit_c [function] [call site] 03962
4 isspace_c [function] [call site] 03963
4 bam_aux_append [function] [call site] 03964
5 __assert_fail [call site] 03965
5 realloc_bam_data [function] [call site] 03966
5 __errno_location [call site] 03967
4 aux_parse [function] [call site] 03968
3 __errno_location [call site] 03969
3 __errno_location [call site] 03970
3 sam_passes_filter [function] [call site] 03971
4 hts_filter_eval2 [function] [call site] 03972
5 ks_free [function] [call site] 03973
5 hts_filter_eval_ [function] [call site] 03974
6 expression [function] [call site] 03975
7 and_expr [function] [call site] 03976
8 eq_expr [function] [call site] 03977
9 cmp_expr [function] [call site] 03978
10 bitor_expr [function] [call site] 03979
11 bitxor_expr [function] [call site] 03980
12 bitand_expr [function] [call site] 03981
13 add_expr [function] [call site] 03982
14 mul_expr [function] [call site] 03983
15 unary_expr [function] [call site] 03984
16 ws [function] [call site] 03985
16 simple_expr [function] [call site] 03986
17 ws [function] [call site] 03987
17 expression [function] [call site] 03988
17 ws [function] [call site] 03989
17 hts_str2dbl [function] [call site] 03990
18 __ctype_b_loc [call site] 03991
18 strtod [call site] 03992
17 ks_clear [function] [call site] 03993
17 func_expr [function] [call site] 03994
18 expression [function] [call site] 03995
18 expr_func_avg [function] [call site] 03996
18 expression [function] [call site] 03997
18 ws [function] [call site] 03998
18 hts_expr_val_existsT [function] [call site] 03999
19 hts_expr_val_exists [function] [call site] 04000
18 hts_expr_val_free [function] [call site] 04001
19 ks_free [function] [call site] 04002
18 strncmp [call site] 04003
18 expression [function] [call site] 04004
18 hts_expr_val_existsT [function] [call site] 04005
18 expression [function] [call site] 04006
18 exp [call site] 04007
18 hts_expr_val_undef [function] [call site] 04008
19 ks_clear [function] [call site] 04009
18 expression [function] [call site] 04010
18 expr_func_length [function] [call site] 04011
18 expression [function] [call site] 04012
18 log [call site] 04013
18 hts_expr_val_undef [function] [call site] 04014
18 strncmp [call site] 04015
18 expression [function] [call site] 04016
18 expr_func_min [function] [call site] 04017
18 strncmp [call site] 04018
18 expression [function] [call site] 04019
18 expr_func_max [function] [call site] 04020
18 strncmp [call site] 04021
18 expression [function] [call site] 04022
18 ws [function] [call site] 04023
18 hts_expr_val_exists [function] [call site] 04024
18 hts_expr_val_undef [function] [call site] 04025
18 hts_expr_val_free [function] [call site] 04026
18 hts_expr_val_free [function] [call site] 04027
18 hts_expr_val_undef [function] [call site] 04028
18 expression [function] [call site] 04029
18 sqrt [call site] 04030
18 hts_expr_val_undef [function] [call site] 04031
18 ws [function] [call site] 04032
16 hts_expr_val_exists [function] [call site] 04033
16 hts_expr_val_undef [function] [call site] 04034
16 unary_expr [function] [call site] 04035
17 hts_expr_val_exists [function] [call site] 04036
17 unary_expr [function] [call site] 04037
18 hts_expr_val_exists [function] [call site] 04038
18 hts_expr_val_undef [function] [call site] 04039
18 hts_expr_val_exists [function] [call site] 04040
18 hts_expr_val_undef [function] [call site] 04041
18 simple_expr [function] [call site] 04042
15 ws [function] [call site] 04043
15 unary_expr [function] [call site] 04044
15 hts_expr_val_exists [function] [call site] 04045
15 hts_expr_val_undef [function] [call site] 04046
15 hts_expr_val_free [function] [call site] 04047
15 hts_expr_val_undef [function] [call site] 04048
15 hts_expr_val_exists [function] [call site] 04049
15 hts_expr_val_free [function] [call site] 04050
14 ws [function] [call site] 04051
14 mul_expr [function] [call site] 04052
14 hts_expr_val_exists [function] [call site] 04053
14 hts_expr_val_free [function] [call site] 04054
14 hts_expr_val_undef [function] [call site] 04055
14 hts_expr_val_free [function] [call site] 04056
13 ws [function] [call site] 04057
13 add_expr [function] [call site] 04058
13 hts_expr_val_exists [function] [call site] 04059
13 hts_expr_val_free [function] [call site] 04060
13 hts_expr_val_free [function] [call site] 04061
13 hts_expr_val_undef [function] [call site] 04062
12 ws [function] [call site] 04063
12 bitand_expr [function] [call site] 04064
12 hts_expr_val_exists [function] [call site] 04065
12 hts_expr_val_free [function] [call site] 04066
12 hts_expr_val_free [function] [call site] 04067
12 hts_expr_val_undef [function] [call site] 04068
11 ws [function] [call site] 04069
11 bitxor_expr [function] [call site] 04070
11 hts_expr_val_exists [function] [call site] 04071
11 hts_expr_val_free [function] [call site] 04072
11 hts_expr_val_free [function] [call site] 04073
11 hts_expr_val_undef [function] [call site] 04074
10 ws [function] [call site] 04075
10 cmp_expr [function] [call site] 04076
11 hts_expr_val_exists [function] [call site] 04077
11 hts_expr_val_undef [function] [call site] 04078
11 cmp_expr [function] [call site] 04079
12 hts_expr_val_exists [function] [call site] 04080
12 hts_expr_val_undef [function] [call site] 04081
12 strcmp [call site] 04082
12 cmp_expr [function] [call site] 04083
13 hts_expr_val_exists [function] [call site] 04084
13 hts_expr_val_undef [function] [call site] 04085
13 cmp_expr [function] [call site] 04086
14 hts_expr_val_exists [function] [call site] 04087
14 hts_expr_val_undef [function] [call site] 04088
14 hts_expr_val_exists [function] [call site] 04089
14 hts_expr_val_undef [function] [call site] 04090
14 hts_expr_val_free [function] [call site] 04091
9 ws [function] [call site] 04092
9 eq_expr [function] [call site] 04093
10 hts_expr_val_exists [function] [call site] 04094
10 hts_expr_val_undef [function] [call site] 04095
10 strcmp [call site] 04096
10 eq_expr [function] [call site] 04097
11 hts_expr_val_exists [function] [call site] 04098
11 hts_expr_val_undef [function] [call site] 04099
11 strcmp [call site] 04100
11 eq_expr [function] [call site] 04101
12 hts_expr_val_free [function] [call site] 04102
12 fprintf [call site] 04103
12 hts_expr_val_free [function] [call site] 04104
12 hts_expr_val_exists [function] [call site] 04105
12 hts_expr_val_undef [function] [call site] 04106
12 hts_expr_val_free [function] [call site] 04107
8 ws [function] [call site] 04108
8 eq_expr [function] [call site] 04109
8 hts_expr_val_existsT [function] [call site] 04110
8 hts_expr_val_undef [function] [call site] 04111
8 eq_expr [function] [call site] 04112
8 hts_expr_val_existsT [function] [call site] 04113
8 hts_expr_val_undef [function] [call site] 04114
8 hts_expr_val_existsT [function] [call site] 04115
8 hts_expr_val_undef [function] [call site] 04116
8 hts_expr_val_existsT [function] [call site] 04117
8 hts_expr_val_undef [function] [call site] 04118
8 hts_expr_val_free [function] [call site] 04119
6 ws [function] [call site] 04120
6 hts_expr_val_exists [function] [call site] 04121
4 bam_sym_lookup [function] [call site] 04122
5 ks_clear [function] [call site] 04123
5 kputw [function] [call site] 04124
5 kputc_ [function] [call site] 04125
5 kputs [function] [call site] 04126
5 kputs [function] [call site] 04127
5 memcmp [call site] 04128
5 bam_endpos [function] [call site] 04129
5 memcmp [call site] 04130
5 memcmp [call site] 04131
5 memcmp [call site] 04132
5 memcmp [call site] 04133
5 memcmp [call site] 04134
5 memcmp [call site] 04135
5 memcmp [call site] 04136
5 memcmp [call site] 04137
5 memcmp [call site] 04138
5 memcmp [call site] 04139
5 memcmp [call site] 04140
5 memcmp [call site] 04141
5 hts_log [function] [call site] 04142
5 memcmp [call site] 04143
5 bam_get_library [function] [call site] 04144
6 bam_aux_get [function] [call site] 04145
6 sam_hdr_find_tag_id [function] [call site] 04146
5 ks_clear [function] [call site] 04147
5 memcmp [call site] 04148
5 memcmp [call site] 04149
5 sam_hdr_tid2name [function] [call site] 04150
5 ks_clear [function] [call site] 04151
5 memcmp [call site] 04152
5 memcmp [call site] 04153
5 memcmp [call site] 04154
5 memcmp [call site] 04155
5 bam_cigar2qlen [function] [call site] 04156
5 memcmp [call site] 04157
5 ks_clear [function] [call site] 04158
5 memcmp [call site] 04159
5 ks_clear [function] [call site] 04160
5 ks_resize [function] [call site] 04161
5 memcmp [call site] 04162
5 bam_cigar2rlen [function] [call site] 04163
5 memcmp [call site] 04164
5 sam_hdr_tid2name [function] [call site] 04165
5 ks_clear [function] [call site] 04166
5 sam_hdr_tid2name [function] [call site] 04167
5 ks_clear [function] [call site] 04168
5 memcmp [call site] 04169
5 memcmp [call site] 04170
5 ks_clear [function] [call site] 04171
5 ks_resize [function] [call site] 04172
5 nibble2base [function] [call site] 04173
5 memcmp [call site] 04174
5 bam_aux_get [function] [call site] 04175
5 ks_clear [function] [call site] 04176
5 ks_clear [function] [call site] 04177
5 bam_aux2i [function] [call site] 04178
5 bam_aux2f [function] [call site] 04179
6 le_to_double [function] [call site] 04180
6 le_to_float [function] [call site] 04181
6 get_int_aux_val [function] [call site] 04182
5 hts_log [function] [call site] 04183
4 hts_log [function] [call site] 04184
4 hts_expr_val_free [function] [call site] 04185
4 hts_expr_val_free [function] [call site] 04186
2 sam_write1 [function] [call site] 04187
3 bam_write_idx1 [function] [call site] 04188
4 bam_write1 [function] [call site] 04189
5 hts_log [function] [call site] 04190
5 __errno_location [call site] 04191
5 hts_log [function] [call site] 04192
5 bgzf_flush_try [function] [call site] 04193
6 lazy_flush [function] [call site] 04194
5 ed_swap_4p [function] [call site] 04195
5 ed_swap_4p [function] [call site] 04196
5 bgzf_write [function] [call site] 04197
5 swap_data [function] [call site] 04198
5 bgzf_write [function] [call site] 04199
5 bgzf_write [function] [call site] 04200
5 bgzf_write [function] [call site] 04201
5 bgzf_write [function] [call site] 04202
5 bam_cigar2rlen [function] [call site] 04203
5 hts_log [function] [call site] 04204
5 u32_to_le [function] [call site] 04205
5 u32_to_le [function] [call site] 04206
5 bgzf_write [function] [call site] 04207
5 bgzf_write [function] [call site] 04208
5 bgzf_write [function] [call site] 04209
5 u32_to_le [function] [call site] 04210
5 bgzf_write [function] [call site] 04211
5 bgzf_write [function] [call site] 04212
5 swap_data [function] [call site] 04213
4 bgzf_flush_try [function] [call site] 04214
4 hts_idx_amend_last [function] [call site] 04215
4 bgzf_idx_amend_last [function] [call site] 04216
4 bam_write1 [function] [call site] 04217
4 bam_endpos [function] [call site] 04218
4 bgzf_idx_push [function] [call site] 04219
5 hts_idx_push [function] [call site] 04220
6 hts_idx_check_range [function] [call site] 04221
7 hts_log [function] [call site] 04222
7 __errno_location [call site] 04223
6 realloc [call site] 04224
6 realloc [call site] 04225
6 hts_log [function] [call site] 04226
6 hts_log [function] [call site] 04227
6 hts_log [function] [call site] 04228
6 kh_init_bin [function] [call site] 04229
7 calloc [call site] 04230
6 insert_to_l [function] [call site] 04231
7 realloc [call site] 04232
6 hts_reg2bin [function] [call site] 04233
6 insert_to_b [function] [call site] 04234
7 kh_put_bin [function] [call site] 04235
7 kh_del_bin [function] [call site] 04236
7 realloc [call site] 04237
6 insert_to_b [function] [call site] 04238
6 insert_to_b [function] [call site] 04239
5 hts_idx_check_range [function] [call site] 04240
5 pthread_mutex_unlock [call site] 04241
5 pthread_mutex_unlock [call site] 04242
4 sam_hdr_tid2name [function] [call site] 04243
4 hts_log [function] [call site] 04244
3 cram_put_bam_seq [function] [call site] 04245
4 cram_new_container [function] [call site] 04246
4 pthread_mutex_lock [call site] 04247
4 pthread_mutex_unlock [call site] 04248
4 hts_log [function] [call site] 04249
4 pthread_mutex_lock [call site] 04250
4 hts_log [function] [call site] 04251
4 pthread_mutex_unlock [call site] 04252
4 cram_next_container [function] [call site] 04253
5 cram_update_curr_slice [function] [call site] 04254
5 hts_log [function] [call site] 04255
5 cram_flush_container_mt [function] [call site] 04256
5 cram_free_slice [function] [call site] 04257
5 cram_free_container [function] [call site] 04258
5 cram_new_container [function] [call site] 04259
5 cram_new_slice [function] [call site] 04260
6 calloc [call site] 04261
6 calloc [call site] 04262
6 cram_new_block [function] [call site] 04263
6 cram_new_block [function] [call site] 04264
6 cram_new_block [function] [call site] 04265
6 cram_new_block [function] [call site] 04266
6 cram_new_block [function] [call site] 04267
6 cram_new_block [function] [call site] 04268
6 string_pool_create [function] [call site] 04269
6 kh_init_m_s2i [function] [call site] 04270
6 kh_init_m_s2i [function] [call site] 04271
6 cram_free_slice [function] [call site] 04272
4 cram_free_container [function] [call site] 04273
4 pthread_mutex_lock [call site] 04274
4 calloc [call site] 04275
4 pthread_mutex_unlock [call site] 04276
4 pthread_mutex_lock [call site] 04277
4 calloc [call site] 04278
4 pthread_mutex_unlock [call site] 04279
4 pthread_mutex_lock [call site] 04280
4 pthread_mutex_unlock [call site] 04281
4 pthread_mutex_lock [call site] 04282
4 pthread_mutex_unlock [call site] 04283
4 pthread_mutex_unlock [call site] 04284
4 bam_copy1 [function] [call site] 04285
4 bam_dup1 [function] [call site] 04286
5 bam_init1 [function] [call site] 04287
5 bam_copy1 [function] [call site] 04288
5 bam_destroy1 [function] [call site] 04289
3 pthread_create [call site] 04290
3 sam_dispatcher_write [function] [call site] 04291
4 hts_tpool_next_result_wait [function] [call site] 04292
4 hts_tpool_result_data [function] [call site] 04293
4 sam_state_err [function] [call site] 04294
4 bgzf_flush_try [function] [call site] 04295
4 bgzf_write [function] [call site] 04296
4 hwrite [function] [call site] 04297
4 bam_endpos [function] [call site] 04298
4 bgzf_idx_push [function] [call site] 04299
4 sam_state_err [function] [call site] 04300
4 sam_hdr_tid2name [function] [call site] 04301
4 hts_log [function] [call site] 04302
4 bam_endpos [function] [call site] 04303
4 hts_idx_push [function] [call site] 04304
4 __errno_location [call site] 04305
4 sam_state_err [function] [call site] 04306
4 sam_hdr_tid2name [function] [call site] 04307
4 hts_log [function] [call site] 04308
4 __assert_fail [call site] 04309
4 pthread_mutex_lock [call site] 04310
4 pthread_mutex_unlock [call site] 04311
4 bgzf_write [function] [call site] 04312
4 bgzf_flush_try [function] [call site] 04313
4 bgzf_write [function] [call site] 04314
4 hwrite [function] [call site] 04315
4 hts_tpool_delete_result [function] [call site] 04316
4 pthread_mutex_lock [call site] 04317
4 pthread_mutex_unlock [call site] 04318
4 sam_state_err [function] [call site] 04319
4 hts_tpool_process_shutdown [function] [call site] 04320
4 __errno_location [call site] 04321
4 sam_state_err [function] [call site] 04322
3 hts_log [function] [call site] 04323
3 pthread_mutex_lock [call site] 04324
3 pthread_mutex_unlock [call site] 04325
3 pthread_mutex_unlock [call site] 04326
3 calloc [call site] 04327
3 calloc [call site] 04328
3 bam_copy1 [function] [call site] 04329
3 pthread_mutex_lock [call site] 04330
3 pthread_mutex_unlock [call site] 04331
3 hts_tpool_dispatch3 [function] [call site] 04332
3 sam_format_worker [function] [call site] 04333
3 pthread_mutex_unlock [call site] 04334
3 pthread_mutex_unlock [call site] 04335
3 sam_format1 [function] [call site] 04336
4 sam_format1_append [function] [call site] 04337
3 kputc [function] [call site] 04338
3 bgzf_flush_try [function] [call site] 04339
3 bgzf_write [function] [call site] 04340
3 hwrite [function] [call site] 04341
3 bam_endpos [function] [call site] 04342
3 bgzf_idx_push [function] [call site] 04343
3 sam_hdr_tid2name [function] [call site] 04344
3 hts_log [function] [call site] 04345
3 bam_endpos [function] [call site] 04346
3 hts_idx_push [function] [call site] 04347
3 sam_hdr_tid2name [function] [call site] 04348
3 hts_log [function] [call site] 04349
3 fastq_state_init [function] [call site] 04350
3 fastq_format1 [function] [call site] 04351
4 kputc [function] [call site] 04352
4 kputs [function] [call site] 04353
4 kputs [function] [call site] 04354
4 bam_aux_get [function] [call site] 04355
4 ksprintf [function] [call site] 04356
4 isupper_c [function] [call site] 04357
4 hts_log [function] [call site] 04358
4 strlen [call site] 04359
4 strlen [call site] 04360
4 isalpha_c [function] [call site] 04361
4 islower_c [function] [call site] 04362
5 __ctype_b_loc [call site] 04363
4 toupper_c [function] [call site] 04364
4 kh_get_tag [function] [call site] 04365
4 kputc_ [function] [call site] 04366
4 sam_format_aux1 [function] [call site] 04367
4 skip_aux [function] [call site] 04368
4 kputsn [function] [call site] 04369
4 ks_resize [function] [call site] 04370
4 kputc_ [function] [call site] 04371
4 kputc_ [function] [call site] 04372
4 kputc_ [function] [call site] 04373
4 kputsn [function] [call site] 04374
4 kputc_ [function] [call site] 04375
4 kputc_ [function] [call site] 04376
4 kputc_ [function] [call site] 04377
4 kputc [function] [call site] 04378
3 bgzf_flush_try [function] [call site] 04379
3 bgzf_write [function] [call site] 04380
3 hwrite [function] [call site] 04381
3 __errno_location [call site] 04382
2 bam_destroy1 [function] [call site] 04383
2 sam_hdr_destroy [function] [call site] 04384
2 hts_close_or_abort [function] [call site] 04385
1 view_vcf [function] [call site] 04386
2 hts_open [function] [call site] 04387
2 bcf_hdr_read [function] [call site] 04388
3 vcf_hdr_read [function] [call site] 04389
4 bcf_hdr_init [function] [call site] 04390
5 calloc [call site] 04391
5 kh_init_vdict [function] [call site] 04392
6 calloc [call site] 04393
5 bcf_hdr_append [function] [call site] 04394
6 bcf_hdr_parse_line [function] [call site] 04395
7 calloc [call site] 04396
7 isalpha_c [function] [call site] 04397
7 isalnum_c [function] [call site] 04398
7 bcf_hrec_add_key [function] [call site] 04399
8 realloc [call site] 04400
7 is_escaped [function] [call site] 04401
7 hts_strprint [function] [call site] 04402
7 hts_log [function] [call site] 04403
7 bcf_hrec_set_val [function] [call site] 04404
8 __errno_location [call site] 04405
7 hts_log [function] [call site] 04406
7 isspace_c [function] [call site] 04407
7 hts_strprint [function] [call site] 04408
7 hts_log [function] [call site] 04409
7 bcf_hrec_destroy [function] [call site] 04410
7 hts_strprint [function] [call site] 04411
7 hts_log [function] [call site] 04412
7 bcf_hrec_destroy [function] [call site] 04413
6 bcf_hdr_add_hrec [function] [call site] 04414
7 bcf_hrec_check [function] [call site] 04415
8 bcf_hrec_set_type [function] [call site] 04416
9 strcmp [call site] 04417
9 strcmp [call site] 04418
8 bcf_hrec_find_key [function] [call site] 04419
9 strcasecmp [call site] 04420
8 bcf_hrec_find_key [function] [call site] 04421
8 bcf_hrec_find_key [function] [call site] 04422
8 hts_log [function] [call site] 04423
8 hts_log [function] [call site] 04424
8 hts_log [function] [call site] 04425
7 bcf_hdr_register_hrec [function] [call site] 04426
8 bcf_hrec_set_type [function] [call site] 04427
8 bcf_hrec_find_key [function] [call site] 04428
8 strtoll [call site] 04429
8 bcf_hrec_find_key [function] [call site] 04430
8 strdup [call site] 04431
8 kh_get_vdict [function] [call site] 04432
9 __ac_X31_hash_string [function] [call site] 04433
8 kh_put_vdict [function] [call site] 04434
9 kh_resize_vdict [function] [call site] 04435
8 bcf_hrec_find_key [function] [call site] 04436
8 strtol [call site] 04437
8 kh_del_vdict [function] [call site] 04438
8 bcf_hdr_set_idx [function] [call site] 04439
9 hts_log [function] [call site] 04440
9 __errno_location [call site] 04441
9 hts_resize_array_ [function] [call site] 04442
10 hts_log [function] [call site] 04443
10 __errno_location [call site] 04444
10 realloc [call site] 04445
10 __errno_location [call site] 04446
10 __errno_location [call site] 04447
10 hts_log [function] [call site] 04448
10 __errno_location [call site] 04449
10 abort [call site] 04450
10 abort [call site] 04451
8 kh_del_vdict [function] [call site] 04452
8 hrec_add_idx [function] [call site] 04453
9 realloc [call site] 04454
9 realloc [call site] 04455
9 strdup [call site] 04456
9 kputw [function] [call site] 04457
8 strtol [call site] 04458
8 strcmp [call site] 04459
8 strcmp [call site] 04460
8 strcmp [call site] 04461
8 strcmp [call site] 04462
8 hts_log [function] [call site] 04463
8 strcmp [call site] 04464
8 strcmp [call site] 04465
8 __isoc99_sscanf [call site] 04466
8 hts_log [function] [call site] 04467
8 hts_log [function] [call site] 04468
8 hts_log [function] [call site] 04469
8 strdup [call site] 04470
8 kh_get_vdict [function] [call site] 04471
8 hrec_add_idx [function] [call site] 04472
8 kh_put_vdict [function] [call site] 04473
8 bcf_hdr_set_idx [function] [call site] 04474
8 kh_del_vdict [function] [call site] 04475
8 hrec_add_idx [function] [call site] 04476
7 bcf_hrec_destroy [function] [call site] 04477
7 strcmp [call site] 04478
7 strcmp [call site] 04479
7 bcf_hrec_destroy [function] [call site] 04480
7 realloc [call site] 04481
5 bcf_hdr_append [function] [call site] 04482
5 kh_destroy_vdict [function] [call site] 04483
4 hts_log [function] [call site] 04484
4 hts_getline [function] [call site] 04485
4 hts_log [function] [call site] 04486
4 hopen [function] [call site] 04487
4 hts_log [function] [call site] 04488
4 kgetline [function] [call site] 04489
4 hgets [function] [call site] 04490
4 strchr [call site] 04491
4 kputs [function] [call site] 04492
4 kputsn [function] [call site] 04493
4 kputs [function] [call site] 04494
4 atol [call site] 04495
4 kputl [function] [call site] 04496
5 kputll [function] [call site] 04497
4 kputsn [function] [call site] 04498
4 hclose [function] [call site] 04499
4 hts_log [function] [call site] 04500
4 kputsn [function] [call site] 04501
4 kputc [function] [call site] 04502
4 bcf_hdr_parse [function] [call site] 04503
5 bcf_hdr_parse_line [function] [call site] 04504
5 hts_log [function] [call site] 04505
5 bcf_hdr_add_hrec [function] [call site] 04506
5 bcf_hrec_destroy [function] [call site] 04507
5 bcf_hdr_parse_line [function] [call site] 04508
5 bcf_hdr_add_hrec [function] [call site] 04509
5 bcf_hrec_destroy [function] [call site] 04510
5 bcf_hdr_parse_line [function] [call site] 04511
5 bcf_hdr_add_hrec [function] [call site] 04512
5 bcf_hrec_destroy [function] [call site] 04513
5 strchr [call site] 04514
5 hts_strprint [function] [call site] 04515
5 hts_log [function] [call site] 04516
5 hts_log [function] [call site] 04517
5 bcf_hdr_parse_sample_line [function] [call site] 04518
6 strlen [call site] 04519
6 hts_log [function] [call site] 04520
6 hts_log [function] [call site] 04521
6 bcf_hdr_add_sample_len [function] [call site] 04522
7 isspace_c [function] [call site] 04523
7 hts_log [function] [call site] 04524
7 realloc [call site] 04525
7 kh_put_vdict [function] [call site] 04526
7 hts_log [function] [call site] 04527
5 bcf_hdr_sync [function] [call site] 04528
5 bcf_hdr_check_sanity [function] [call site] 04529
6 bcf_hdr_id2int [function] [call site] 04530
7 kh_get_vdict [function] [call site] 04531
6 hts_log [function] [call site] 04532
6 bcf_hdr_id2int [function] [call site] 04533
6 hts_log [function] [call site] 04534
4 tbx_index_load3 [function] [call site] 04535
5 index_load [function] [call site] 04536
6 hts_idx_get_meta [function] [call site] 04537
6 le_to_i32 [function] [call site] 04538
6 le_to_i32 [function] [call site] 04539
6 le_to_i32 [function] [call site] 04540
6 le_to_i32 [function] [call site] 04541
6 le_to_i32 [function] [call site] 04542
6 le_to_i32 [function] [call site] 04543
6 le_to_u32 [function] [call site] 04544
6 get_tid [function] [call site] 04545
7 kh_init_s2i [function] [call site] 04546
7 kh_put_s2i [function] [call site] 04547
7 strdup [call site] 04548
7 kh_get_s2i [function] [call site] 04549
6 __errno_location [call site] 04550
6 hts_log [function] [call site] 04551
6 hts_log [function] [call site] 04552
6 tbx_destroy [function] [call site] 04553
7 hts_idx_destroy [function] [call site] 04554
7 kh_destroy_s2i [function] [call site] 04555
4 tbx_seqnames [function] [call site] 04556
5 calloc [call site] 04557
5 calloc [call site] 04558
5 __assert_fail [call site] 04559
5 __assert_fail [call site] 04560
4 bcf_hdr_get_hrec [function] [call site] 04561
5 strcmp [call site] 04562
5 bcf_hrec_find_key [function] [call site] 04563
5 strcmp [call site] 04564
5 kh_get_vdict [function] [call site] 04565
4 add_missing_contig_hrec [function] [call site] 04566
5 strdup [call site] 04567
5 bcf_hrec_add_key [function] [call site] 04568
5 strlen [call site] 04569
5 bcf_hrec_set_val [function] [call site] 04570
5 bcf_hdr_add_hrec [function] [call site] 04571
5 __errno_location [call site] 04572
5 __errno_location [call site] 04573
5 hts_log [function] [call site] 04574
5 bcf_hrec_destroy [function] [call site] 04575
5 __errno_location [call site] 04576
4 bcf_hdr_sync [function] [call site] 04577
4 tbx_destroy [function] [call site] 04578
4 tbx_destroy [function] [call site] 04579
4 bcf_hdr_destroy [function] [call site] 04580
5 kh_destroy_vdict [function] [call site] 04581
5 bcf_hrec_destroy [function] [call site] 04582
3 bcf_hdr_init [function] [call site] 04583
3 hts_log [function] [call site] 04584
3 bgzf_read [function] [call site] 04585
3 hts_log [function] [call site] 04586
3 bcf_hdr_destroy [function] [call site] 04587
3 strncmp [call site] 04588
3 strncmp [call site] 04589
3 hts_log [function] [call site] 04590
3 hts_log [function] [call site] 04591
3 bcf_hdr_destroy [function] [call site] 04592
3 bgzf_read [function] [call site] 04593
3 __errno_location [call site] 04594
3 bgzf_read [function] [call site] 04595
3 bcf_hdr_parse [function] [call site] 04596
3 hts_log [function] [call site] 04597
3 bcf_hdr_destroy [function] [call site] 04598
2 hts_close_or_abort [function] [call site] 04599
2 bcf_hdr_write [function] [call site] 04600
3 __errno_location [call site] 04601
3 bcf_hdr_sync [function] [call site] 04602
3 vcf_hdr_write [function] [call site] 04603
4 bcf_hdr_format [function] [call site] 04604
5 _bcf_hrec_format [function] [call site] 04605
6 ksprintf [function] [call site] 04606
6 strcmp [call site] 04607
6 kputc [function] [call site] 04608
6 ksprintf [function] [call site] 04609
6 ksprintf [function] [call site] 04610
6 ksprintf [function] [call site] 04611
5 ksprintf [function] [call site] 04612
5 ksprintf [function] [call site] 04613
5 ksprintf [function] [call site] 04614
5 ksprintf [function] [call site] 04615
4 bgzf_write [function] [call site] 04616
4 bgzf_flush [function] [call site] 04617
4 hwrite [function] [call site] 04618
3 bcf_hdr_format [function] [call site] 04619
3 kputc [function] [call site] 04620
3 bgzf_write [function] [call site] 04621
3 u32_to_le [function] [call site] 04622
3 bgzf_write [function] [call site] 04623
3 bgzf_write [function] [call site] 04624
2 bcf_hdr_destroy [function] [call site] 04625
2 hts_close_or_abort [function] [call site] 04626
2 bcf_init [function] [call site] 04627
3 calloc [call site] 04628
2 bcf_hdr_destroy [function] [call site] 04629
2 hts_close_or_abort [function] [call site] 04630
2 bcf_read [function] [call site] 04631
3 vcf_read [function] [call site] 04632
4 hts_getline [function] [call site] 04633
4 vcf_parse [function] [call site] 04634
5 bcf_clear [function] [call site] 04635
6 bcf_float_set [function] [call site] 04636
5 kstrtok [function] [call site] 04637
5 kh_get_vdict [function] [call site] 04638
5 hts_log [function] [call site] 04639
5 fix_chromosome [function] [call site] 04640
6 ksprintf [function] [call site] 04641
6 bcf_hdr_parse_line [function] [call site] 04642
6 bcf_hdr_add_hrec [function] [call site] 04643
6 bcf_hrec_destroy [function] [call site] 04644
6 bcf_hdr_sync [function] [call site] 04645
6 kh_get_vdict [function] [call site] 04646
5 hts_log [function] [call site] 04647
5 hts_str2uint [function] [call site] 04648
5 hts_log [function] [call site] 04649
5 strcmp [call site] 04650
5 bcf_enc_vchar [function] [call site] 04651
6 bcf_enc_size [function] [call site] 04652
7 kputc [function] [call site] 04653
7 kputc [function] [call site] 04654
7 kputsn [function] [call site] 04655
7 i16_to_le [function] [call site] 04656
7 kputc [function] [call site] 04657
7 kputc [function] [call site] 04658
7 kputc [function] [call site] 04659
6 kputsn [function] [call site] 04660
5 bcf_enc_size [function] [call site] 04661
5 bcf_enc_vchar [function] [call site] 04662
5 strcmp [call site] 04663
5 bcf_seqname_safe [function] [call site] 04664
6 bcf_seqname [function] [call site] 04665
7 bcf_hdr_id2name [function] [call site] 04666
5 hts_log [function] [call site] 04667
5 bcf_enc_vchar [function] [call site] 04668
5 bcf_float_set [function] [call site] 04669
5 strcmp [call site] 04670
5 vcf_parse_filter [function] [call site] 04671
6 bcf_seqname_safe [function] [call site] 04672
6 hts_log [function] [call site] 04673
6 kstrtok [function] [call site] 04674
6 kh_get_vdict [function] [call site] 04675
6 hts_log [function] [call site] 04676
6 ksprintf [function] [call site] 04677
6 bcf_hdr_parse_line [function] [call site] 04678
6 bcf_hdr_add_hrec [function] [call site] 04679
6 bcf_hrec_destroy [function] [call site] 04680
6 bcf_hdr_sync [function] [call site] 04681
6 kh_get_vdict [function] [call site] 04682
6 bcf_seqname_safe [function] [call site] 04683
6 hts_log [function] [call site] 04684
6 bcf_enc_vint [function] [call site] 04685
7 bcf_enc_size [function] [call site] 04686
7 bcf_enc_int1 [function] [call site] 04687
8 bcf_enc_size [function] [call site] 04688
8 kputc [function] [call site] 04689
8 bcf_enc_size [function] [call site] 04690
8 kputc [function] [call site] 04691
8 bcf_enc_size [function] [call site] 04692
8 kputc [function] [call site] 04693
8 i16_to_le [function] [call site] 04694
8 bcf_enc_size [function] [call site] 04695
8 kputsn [function] [call site] 04696
8 i32_to_le [function] [call site] 04697
8 bcf_enc_size [function] [call site] 04698
8 kputsn [function] [call site] 04699
7 bcf_enc_size [function] [call site] 04700
7 kputc [function] [call site] 04701
7 kputc [function] [call site] 04702
7 kputc [function] [call site] 04703
7 bcf_enc_size [function] [call site] 04704
7 ks_resize [function] [call site] 04705
7 i16_to_le [function] [call site] 04706
7 bcf_enc_size [function] [call site] 04707
7 ks_resize [function] [call site] 04708
7 i32_to_le [function] [call site] 04709
5 bcf_enc_vint [function] [call site] 04710
5 strcmp [call site] 04711
5 vcf_parse_info [function] [call site] 04712
6 bcf_seqname_safe [function] [call site] 04713
6 hts_log [function] [call site] 04714
6 kh_get_vdict [function] [call site] 04715
6 hts_log [function] [call site] 04716
6 ksprintf [function] [call site] 04717
6 bcf_hdr_parse_line [function] [call site] 04718
6 bcf_hdr_add_hrec [function] [call site] 04719
6 bcf_hrec_destroy [function] [call site] 04720
6 bcf_hdr_sync [function] [call site] 04721
6 kh_get_vdict [function] [call site] 04722
6 bcf_seqname_safe [function] [call site] 04723
6 hts_log [function] [call site] 04724
6 bcf_enc_int1 [function] [call site] 04725
6 bcf_enc_size [function] [call site] 04726
6 bcf_enc_vchar [function] [call site] 04727
6 realloc [call site] 04728
6 bcf_seqname_safe [function] [call site] 04729
6 hts_log [function] [call site] 04730
6 hts_str2int [function] [call site] 04731
6 bcf_seqname_safe [function] [call site] 04732
6 hts_log [function] [call site] 04733
6 bcf_enc_int1 [function] [call site] 04734
6 bcf_enc_vint [function] [call site] 04735
6 bcf_seqname_safe [function] [call site] 04736
6 hts_log [function] [call site] 04737
6 hts_str2dbl [function] [call site] 04738
6 bcf_float_set [function] [call site] 04739
6 bcf_enc_vfloat [function] [call site] 04740
7 __assert_fail [call site] 04741
7 bcf_enc_size [function] [call site] 04742
7 serialize_float_array [function] [call site] 04743
8 ks_resize [function] [call site] 04744
8 float_to_le [function] [call site] 04745
5 vcf_parse_format [function] [call site] 04746
6 bcf_seqname_safe [function] [call site] 04747
6 hts_log [function] [call site] 04748
6 kstrtok [function] [call site] 04749
6 bcf_seqname_safe [function] [call site] 04750
6 hts_log [function] [call site] 04751
6 kh_get_vdict [function] [call site] 04752
6 bcf_seqname_safe [function] [call site] 04753
6 hts_log [function] [call site] 04754
6 bcf_seqname_safe [function] [call site] 04755
6 hts_log [function] [call site] 04756
6 ksprintf [function] [call site] 04757
6 bcf_hdr_parse_line [function] [call site] 04758
6 bcf_hdr_add_hrec [function] [call site] 04759
6 bcf_hrec_destroy [function] [call site] 04760
6 bcf_hdr_sync [function] [call site] 04761
6 kh_get_vdict [function] [call site] 04762
6 bcf_seqname_safe [function] [call site] 04763
6 hts_log [function] [call site] 04764
6 strcmp [call site] 04765
6 hts_log [function] [call site] 04766
6 bcf_seqname_safe [function] [call site] 04767
6 hts_log [function] [call site] 04768
6 align_mem [function] [call site] 04769
7 kputsn [function] [call site] 04770
6 bcf_seqname_safe [function] [call site] 04771
6 hts_log [function] [call site] 04772
6 bcf_seqname_safe [function] [call site] 04773
6 hts_log [function] [call site] 04774
6 ks_resize [function] [call site] 04775
6 bcf_seqname_safe [function] [call site] 04776
6 bcf_seqname_safe [function] [call site] 04777
6 hts_log [function] [call site] 04778
6 hts_str2uint [function] [call site] 04779
6 bcf_seqname_safe [function] [call site] 04780
6 hts_log [function] [call site] 04781
6 bcf_seqname_safe [function] [call site] 04782
6 hts_log [function] [call site] 04783
6 hts_str2int [function] [call site] 04784
6 bcf_seqname_safe [function] [call site] 04785
6 hts_log [function] [call site] 04786
6 isdigit_c [function] [call site] 04787
6 bcf_float_set [function] [call site] 04788
6 bcf_seqname [function] [call site] 04789
6 bcf_float_set [function] [call site] 04790
6 bcf_float_set [function] [call site] 04791
6 bcf_seqname_safe [function] [call site] 04792
6 hts_log [function] [call site] 04793
6 hts_strprint [function] [call site] 04794
6 bcf_seqname_safe [function] [call site] 04795
6 hts_log [function] [call site] 04796
6 bcf_float_set [function] [call site] 04797
6 bcf_float_set [function] [call site] 04798
6 bcf_enc_int1 [function] [call site] 04799
6 bcf_enc_size [function] [call site] 04800
6 kputsn [function] [call site] 04801
6 bcf_enc_vint [function] [call site] 04802
6 bcf_enc_size [function] [call site] 04803
6 serialize_float_array [function] [call site] 04804
6 bcf_seqname_safe [function] [call site] 04805
6 hts_log [function] [call site] 04806
6 bcf_seqname_safe [function] [call site] 04807
6 hts_log [function] [call site] 04808
6 bcf_seqname_safe [function] [call site] 04809
6 hts_log [function] [call site] 04810
3 bcf_read1_core [function] [call site] 04811
4 bgzf_read [function] [call site] 04812
4 bcf_clear [function] [call site] 04813
4 le_to_u32 [function] [call site] 04814
4 le_to_u32 [function] [call site] 04815
4 ks_resize [function] [call site] 04816
4 le_to_i32 [function] [call site] 04817
4 le_to_u32 [function] [call site] 04818
4 le_to_i32 [function] [call site] 04819
4 le_to_float [function] [call site] 04820
4 le_to_u16 [function] [call site] 04821
4 le_to_u16 [function] [call site] 04822
4 le_to_u32 [function] [call site] 04823
4 bgzf_read [function] [call site] 04824
4 bgzf_read [function] [call site] 04825
3 bcf_record_check [function] [call site] 04826
4 hts_log [function] [call site] 04827
4 bcf_dec_size_safe [function] [call site] 04828
5 bcf_dec_typed_int1_safe [function] [call site] 04829
6 le_to_i16 [function] [call site] 04830
6 le_to_i32 [function] [call site] 04831
4 bcf_seqname_safe [function] [call site] 04832
4 get_type_name [function] [call site] 04833
4 hts_log [function] [call site] 04834
4 bcf_seqname_safe [function] [call site] 04835
4 hts_log [function] [call site] 04836
4 bcf_dec_size_safe [function] [call site] 04837
4 get_type_name [function] [call site] 04838
4 hts_log [function] [call site] 04839
4 bcf_dec_size_safe [function] [call site] 04840
4 bcf_seqname_safe [function] [call site] 04841
4 get_type_name [function] [call site] 04842
4 hts_log [function] [call site] 04843
4 bcf_dec_int1 [function] [call site] 04844
5 le_to_i8 [function] [call site] 04845
5 le_to_i16 [function] [call site] 04846
5 le_to_i32 [function] [call site] 04847
4 bcf_seqname_safe [function] [call site] 04848
4 hts_log [function] [call site] 04849
4 bcf_dec_typed_int1_safe [function] [call site] 04850
4 bcf_seqname_safe [function] [call site] 04851
4 hts_log [function] [call site] 04852
4 bcf_dec_size_safe [function] [call site] 04853
4 bcf_seqname_safe [function] [call site] 04854
4 get_type_name [function] [call site] 04855
4 hts_log [function] [call site] 04856
4 bcf_dec_typed_int1_safe [function] [call site] 04857
4 bcf_record_check_err [function] [call site] 04858
5 bcf_seqname_safe [function] [call site] 04859
4 bcf_dec_size_safe [function] [call site] 04860
4 bcf_record_check_err [function] [call site] 04861
4 bcf_seqname_safe [function] [call site] 04862
4 hts_log [function] [call site] 04863
4 bcf_seqname_safe [function] [call site] 04864
4 hts_log [function] [call site] 04865
4 bcf_seqname_safe [function] [call site] 04866
4 hts_log [function] [call site] 04867
3 bcf_subset_format [function] [call site] 04868
4 hts_realloc_or_die [function] [call site] 04869
4 bcf_unpack_fmt_core1 [function] [call site] 04870
5 bcf_dec_typed_int1 [function] [call site] 04871
6 bcf_dec_int1 [function] [call site] 04872
5 bcf_dec_size [function] [call site] 04873
6 bcf_dec_typed_int1 [function] [call site] 04874
2 bcf_write [function] [call site] 04875
3 bcf_hdr_sync [function] [call site] 04876
3 bcf_seqname_safe [function] [call site] 04877
3 vcf_write [function] [call site] 04878
4 vcf_format [function] [call site] 04879
5 bcf_seqname [function] [call site] 04880
5 hts_log [function] [call site] 04881
5 __errno_location [call site] 04882
5 bcf_unpack [function] [call site] 04883
6 bcf_fmt_sized_array [function] [call site] 04884
7 bcf_dec_size [function] [call site] 04885
7 bcf_fmt_array [function] [call site] 04886
8 kputc [function] [call site] 04887
8 kputc [function] [call site] 04888
8 kputc [function] [call site] 04889
8 le_to_i8 [function] [call site] 04890
8 kputc [function] [call site] 04891
8 le_to_i16 [function] [call site] 04892
8 kputc [function] [call site] 04893
8 le_to_i32 [function] [call site] 04894
8 kputc [function] [call site] 04895
8 le_to_u32 [function] [call site] 04896
8 kputc [function] [call site] 04897
8 kputd [function] [call site] 04898
8 hts_log [function] [call site] 04899
6 kputc [function] [call site] 04900
6 hts_realloc_or_die [function] [call site] 04901
6 bcf_fmt_sized_array [function] [call site] 04902
6 kputc [function] [call site] 04903
6 bcf_dec_size [function] [call site] 04904
6 hts_realloc_or_die [function] [call site] 04905
6 bcf_dec_int1 [function] [call site] 04906
6 hts_realloc_or_die [function] [call site] 04907
6 bcf_unpack_info_core1 [function] [call site] 04908
7 bcf_dec_typed_int1 [function] [call site] 04909
7 bcf_dec_size [function] [call site] 04910
7 le_to_i32 [function] [call site] 04911
7 le_to_float [function] [call site] 04912
7 le_to_i16 [function] [call site] 04913
7 le_to_i64 [function] [call site] 04914
8 le_to_u64 [function] [call site] 04915
6 hts_realloc_or_die [function] [call site] 04916
6 bcf_unpack_fmt_core1 [function] [call site] 04917
5 kputs [function] [call site] 04918
5 kputc [function] [call site] 04919
5 kputc [function] [call site] 04920
5 kputc [function] [call site] 04921
5 kputs [function] [call site] 04922
5 kputc [function] [call site] 04923
5 kputc [function] [call site] 04924
5 kputc [function] [call site] 04925
5 kputs [function] [call site] 04926
5 kputc [function] [call site] 04927
5 kputc [function] [call site] 04928
5 bcf_float_is_missing [function] [call site] 04929
5 kputc [function] [call site] 04930
5 kputd [function] [call site] 04931
5 kputc [function] [call site] 04932
5 bcf_seqname_safe [function] [call site] 04933
5 hts_log [function] [call site] 04934
5 __errno_location [call site] 04935
5 kputc [function] [call site] 04936
5 kputs [function] [call site] 04937
5 kputc [function] [call site] 04938
5 kputc [function] [call site] 04939
5 kputc [function] [call site] 04940
5 bcf_seqname_safe [function] [call site] 04941
5 hts_log [function] [call site] 04942
5 __errno_location [call site] 04943
5 kputs [function] [call site] 04944
5 kputc [function] [call site] 04945
5 kputc [function] [call site] 04946
5 kputc [function] [call site] 04947
5 kputc [function] [call site] 04948
5 kputc [function] [call site] 04949
5 bcf_float_is_missing [function] [call site] 04950
5 kputc [function] [call site] 04951
5 kputd [function] [call site] 04952
5 kputc [function] [call site] 04953
5 bcf_seqname_safe [function] [call site] 04954
5 hts_log [function] [call site] 04955
5 __errno_location [call site] 04956
5 bcf_fmt_array [function] [call site] 04957
5 kputc [function] [call site] 04958
5 kputc [function] [call site] 04959
5 kputc [function] [call site] 04960
5 bcf_seqname_safe [function] [call site] 04961
5 hts_log [function] [call site] 04962
5 __errno_location [call site] 04963
5 kputs [function] [call site] 04964
5 strcmp [call site] 04965
5 kputs [function] [call site] 04966
5 kputc [function] [call site] 04967
5 kputc [function] [call site] 04968
5 bcf_format_gt [function] [call site] 04969
6 le_to_i8 [function] [call site] 04970
6 kputc [function] [call site] 04971
6 le_to_i16 [function] [call site] 04972
6 kputc [function] [call site] 04973
6 le_to_i32 [function] [call site] 04974
6 hts_log [function] [call site] 04975
5 bcf_fmt_array [function] [call site] 04976
5 kputc [function] [call site] 04977
5 kputs [function] [call site] 04978
5 kputc [function] [call site] 04979
4 bgzf_flush_try [function] [call site] 04980
4 bgzf_write [function] [call site] 04981
4 hwrite [function] [call site] 04982
4 bcf_seqname_safe [function] [call site] 04983
4 hts_idx_tbi_name [function] [call site] 04984
5 strlen [call site] 04985
5 realloc [call site] 04986
5 strcpy [call site] 04987
5 le_to_u32 [function] [call site] 04988
4 hts_idx_push [function] [call site] 04989
3 bcf_strerror [function] [call site] 04990
4 add_desc_to_buffer [function] [call site] 04991
5 strlen [call site] 04992
5 snprintf [call site] 04993
5 snprintf [call site] 04994
4 add_desc_to_buffer [function] [call site] 04995
3 bcf_seqname_safe [function] [call site] 04996
3 hts_log [function] [call site] 04997
3 bcf1_sync [function] [call site] 04998
4 bcf1_sync_id [function] [call site] 04999
5 strcmp [call site] 05000
5 strlen [call site] 05001
5 bcf_enc_vchar [function] [call site] 05002
5 bcf_enc_size [function] [call site] 05003
4 bcf1_sync_alleles [function] [call site] 05004
5 strlen [call site] 05005
5 bcf_enc_vchar [function] [call site] 05006
5 strlen [call site] 05007
4 bcf1_sync_filter [function] [call site] 05008
5 bcf_enc_vint [function] [call site] 05009
5 bcf_enc_vint [function] [call site] 05010
4 bcf1_sync_info [function] [call site] 05011
5 kputsn_ [function] [call site] 05012
4 bcf_unpack [function] [call site] 05013
4 bcf1_sync_id [function] [call site] 05014
4 kputsn_ [function] [call site] 05015
4 bcf1_sync_alleles [function] [call site] 05016
4 kputsn_ [function] [call site] 05017
4 strlen [call site] 05018
4 bcf1_sync_filter [function] [call site] 05019
4 kputsn_ [function] [call site] 05020
4 bcf_enc_vint [function] [call site] 05021
4 bcf1_sync_info [function] [call site] 05022
4 kputsn_ [function] [call site] 05023
4 kputsn_ [function] [call site] 05024
3 bcf_seqname_safe [function] [call site] 05025
3 hts_log [function] [call site] 05026
3 u32_to_le [function] [call site] 05027
3 u32_to_le [function] [call site] 05028
3 i32_to_le [function] [call site] 05029
3 u32_to_le [function] [call site] 05030
3 u32_to_le [function] [call site] 05031
3 float_to_le [function] [call site] 05032
3 u16_to_le [function] [call site] 05033
3 u16_to_le [function] [call site] 05034
3 u32_to_le [function] [call site] 05035
3 bgzf_write [function] [call site] 05036
3 bgzf_write [function] [call site] 05037
3 bgzf_write [function] [call site] 05038
2 bcf_destroy [function] [call site] 05039
3 bcf_empty [function] [call site] 05040
4 bcf_clear [function] [call site] 05041
2 bcf_hdr_destroy [function] [call site] 05042
2 hts_close_or_abort [function] [call site] 05043