Fuzz introspector: hts_open_fuzzer
For issues and ideas: https://github.com/ossf/fuzz-introspector/issues

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
6549 6549 1 :

['cram_write_eof_block']

6575 7469 cram_close call site: 03367 /src/htslib/cram/cram_io.c:5532
6444 6444 2 :

['cram_flush_container_mt', 'cram_update_curr_slice']

17243 18336 cram_close call site: 02103 /src/htslib/cram/cram_io.c:5503
4224 4224 4 :

['cram_flush_result', 'hts_tpool_process_destroy', 'hts_tpool_process_flush', 'pthread_mutex_destroy']

10799 11693 cram_close call site: 03361 /src/htslib/cram/cram_io.c:5514
2818 2818 1 :

['hts_process_opts']

2826 2826 hts_hopen call site: 01634 /src/htslib/hts.c:1505
2790 3082 7 :

['strcmp', 'bgzf_open_ref', 'cram_ref_incr_locked', 'free', 'bgzf_close', 'load_ref_portion', 'cram_ref_load']

2814 3106 cram_get_ref call site: 02126 /src/htslib/cram/cram_io.c:3457
2732 2750 5 :

['hclose_abruptly', '__errno_location', 'hts_opt_apply', 'strerror', 'hts_log']

2732 2750 hts_open_format call site: 01939 /src/htslib/hts.c:900
1042 1098 10 :

['float_to_le.1889', 'i32_to_le.1849', 'bgzf_write', 'bcf_strerror', 'bcf_seqname_safe', 'bcf1_sync', 'u32_to_le.1850', 'hts_idx_push', 'u16_to_le.1851', 'hts_log']

1042 1098 bcf_write call site: 05052 /src/htslib/vcf.c:2096
932 932 1 :

['bcf_hdr_append']

932 932 bcf_hdr_init call site: 04420 /src/htslib/vcf.c:1328
639 649 10 :

['memcmp', 'ks_free.2213', 'hts_md5_update', 'sam_hdr_find_tag_id', 'hts_md5_init', 'hts_md5_final', 'cram_get_block_by_id', 'hts_md5_destroy', 'sam_hdr_tid2name', 'md5_print']

1932 3982 cram_decode_slice call site: 03216 /src/htslib/cram/cram_decode.c:2399
537 572 6 :

['tbx_seqnames', 'bcf_hdr_sync', 'add_missing_contig_hrec', 'tbx_destroy', 'bcf_hdr_destroy', 'bcf_hdr_get_hrec']

537 572 vcf_hdr_read call site: 04554 /src/htslib/vcf.c:2224
417 7775 19 :

['hts_tpool_next_result_wait', 'cram_free_container', 'cram_decode_slice_mt', 'cram_read_container', 'cram_free_slice', 'pthread_mutex_lock', 'hts_tpool_process_qsize', 'hts_tpool_result_data', 'cram_read_slice', 'hts_tpool_delete_result', 'hts_tpool_process_len', 'cram_read_block', 'pthread_mutex_unlock', 'cram_seek', 'cram_decode_compression_header', 'sam_hrecs_sort_order', 'free', 'hts_tpool_process_empty', 'hts_log']

417 7775 cram_next_slice call site: 03690 /src/htslib/cram/cram_decode.c:3233
400 400 3 :

['hts_idx_amend_last', 'bgzf_flush_try', 'bgzf_write']

543 553 vcf_write call site: 05054 /src/htslib/vcf.c:3574

Fuzzer calltree

0 LLVMFuzzerTestOneInput [function] [call site] 00000
1 abort [call site] 00001
1 hopen [function] [call site] 00002
2 find_scheme_handler [function] [call site] 00003
3 isalnum_c [function] [call site] 00004
4 __ctype_b_loc [call site] 00005
3 tolower_c [function] [call site] 00006
4 tolower [call site] 00007
3 pthread_mutex_lock [call site] 00008
3 load_hfile_plugins [function] [call site] 00009
4 kh_init_scheme_string [function] [call site] 00010
5 calloc [call site] 00011
4 hfile_add_scheme_handler [function] [call site] 00012
5 try_exe_add_scheme_handler [function] [call site] 00013
5 hts_log [function] [call site] 00014
6 __errno_location [call site] 00015
6 get_severity_tag [function] [call site] 00016
6 fprintf [call site] 00017
6 vfprintf [call site] 00018
6 fprintf [call site] 00019
6 __errno_location [call site] 00020
5 kh_put_scheme_string [function] [call site] 00021
6 kh_resize_scheme_string [function] [call site] 00022
7 __ac_X31_hash_string [function] [call site] 00023
5 __errno_location [call site] 00024
5 hts_log [function] [call site] 00025
5 priority [function] [call site] 00026
4 hfile_add_scheme_handler [function] [call site] 00027
4 hfile_add_scheme_handler [function] [call site] 00028
4 init_add_plugin [function] [call site] 00029
5 hts_log [function] [call site] 00030
5 hts_log [function] [call site] 00031
5 hts_log [function] [call site] 00032
4 init_add_plugin [function] [call site] 00033
4 init_add_plugin [function] [call site] 00034
4 hfile_plugin_init_libcurl [function] [call site] 00035
5 hts_version [function] [call site] 00036
5 curl_global_init [call site] 00037
5 easy_errno [function] [call site] 00038
6 curl_easy_getinfo [call site] 00039
6 curl_easy_getinfo [call site] 00040
6 http_status_errno [function] [call site] 00041
6 curl_easy_strerror [call site] 00042
6 hts_log [function] [call site] 00043
5 __errno_location [call site] 00044
5 curl_share_init [call site] 00045
5 curl_global_cleanup [call site] 00046
5 curl_share_setopt [call site] 00047
5 share_lock [function] [call site] 00048
6 pthread_mutex_lock [call site] 00049
5 curl_share_setopt [call site] 00050
5 share_unlock [function] [call site] 00051
6 pthread_mutex_unlock [call site] 00052
5 curl_share_setopt [call site] 00053
5 curl_share_cleanup [call site] 00054
5 curl_global_cleanup [call site] 00055
5 __errno_location [call site] 00056
5 getenv [call site] 00057
5 strdup [call site] 00058
5 kh_init_auth_map [function] [call site] 00059
6 calloc [call site] 00060
5 __errno_location [call site] 00061
5 kh_destroy_auth_map [function] [call site] 00062
5 curl_share_cleanup [call site] 00063
5 curl_global_cleanup [call site] 00064
5 __errno_location [call site] 00065
5 getenv [call site] 00066
5 strcmp [call site] 00067
5 curl_version_info [call site] 00068
5 ksprintf [function] [call site] 00069
6 kvsprintf [function] [call site] 00070
7 kputd [function] [call site] 00071
8 kputsn [function] [call site] 00072
9 ks_resize [function] [call site] 00073
10 realloc [call site] 00074
8 kputsn [function] [call site] 00075
8 kputc [function] [call site] 00076
9 ks_resize [function] [call site] 00077
8 ks_resize [function] [call site] 00078
8 snprintf [call site] 00079
8 strlen [call site] 00080
8 kputsn [function] [call site] 00081
7 vsnprintf [call site] 00082
7 ks_resize [function] [call site] 00083
7 vsnprintf [call site] 00084
5 libcurl_exit [function] [call site] 00085
6 curl_share_cleanup [call site] 00086
6 free_auth [function] [call site] 00087
7 pthread_mutex_destroy [call site] 00088
6 kh_destroy_auth_map [function] [call site] 00089
6 curl_global_cleanup [call site] 00090
5 hfile_add_scheme_handler [function] [call site] 00091
4 init_add_plugin [function] [call site] 00092
4 hfile_plugin_init_gcs [function] [call site] 00093
5 hfile_add_scheme_handler [function] [call site] 00094
5 hfile_add_scheme_handler [function] [call site] 00095
5 hfile_add_scheme_handler [function] [call site] 00096
4 init_add_plugin [function] [call site] 00097
4 hfile_plugin_init_s3 [function] [call site] 00098
5 hfile_add_scheme_handler [function] [call site] 00099
5 hfile_add_scheme_handler [function] [call site] 00100
5 hfile_add_scheme_handler [function] [call site] 00101
4 init_add_plugin [function] [call site] 00102
4 hfile_plugin_init_s3_write [function] [call site] 00103
5 hts_version [function] [call site] 00104
5 curl_global_init [call site] 00105
5 curl_share_init [call site] 00106
5 curl_global_cleanup [call site] 00107
5 __errno_location [call site] 00108
5 curl_share_setopt [call site] 00109
5 share_lock [function] [call site] 00110
6 pthread_mutex_lock [call site] 00111
5 curl_share_setopt [call site] 00112
5 share_unlock [function] [call site] 00113
6 pthread_mutex_unlock [call site] 00114
5 curl_share_setopt [call site] 00115
5 curl_share_cleanup [call site] 00116
5 curl_global_cleanup [call site] 00117
5 __errno_location [call site] 00118
5 curl_version_info [call site] 00119
5 ksprintf [function] [call site] 00120
5 s3_write_exit [function] [call site] 00121
6 curl_share_cleanup [call site] 00122
6 curl_global_cleanup [call site] 00123
5 hfile_add_scheme_handler [function] [call site] 00124
5 hfile_add_scheme_handler [function] [call site] 00125
5 hfile_add_scheme_handler [function] [call site] 00126
4 atexit [call site] 00127
4 hfile_exit [function] [call site] 00128
5 hfile_shutdown [function] [call site] 00129
6 pthread_mutex_lock [call site] 00130
6 kh_destroy_scheme_string [function] [call site] 00131
6 pthread_mutex_unlock [call site] 00132
5 pthread_mutex_destroy [call site] 00133
3 pthread_mutex_unlock [call site] 00134
3 pthread_mutex_unlock [call site] 00135
3 kh_get_scheme_string [function] [call site] 00136
2 strchr [call site] 00137
2 strcmp [call site] 00138
2 hopen_fd_stdinout [function] [call site] 00139
3 strchr [call site] 00140
3 hdopen [function] [call site] 00141
4 blksize [function] [call site] 00142
5 fstat [call site] 00143
4 strchr [call site] 00144
2 hopen_fd [function] [call site] 00145
3 hfile_oflags [function] [call site] 00146
3 open [call site] 00147
3 blksize [function] [call site] 00148
3 __errno_location [call site] 00149
3 hfile_destroy [function] [call site] 00150
4 __errno_location [call site] 00151
4 __errno_location [call site] 00152
1 hts_hopen [function] [call site] 00153
2 calloc [call site] 00154
2 strdup [call site] 00155
2 ed_is_big [function] [call site] 00156
2 strchr [call site] 00157
2 strncpy [call site] 00158
2 strncpy [call site] 00159
2 strchr [call site] 00160
2 hts_detect_format2 [function] [call site] 00161
3 hpeek [function] [call site] 00162
4 refill_buffer [function] [call site] 00163
5 __errno_location [call site] 00164
3 memcmp [call site] 00165
3 memcmp [call site] 00166
3 decompress_peek_gz [function] [call site] 00167
4 hpeek [function] [call site] 00168
4 inflateInit2_ [call site] 00169
4 inflate [call site] 00170
4 inflateEnd [call site] 00171
3 memcmp [call site] 00172
3 memcmp [call site] 00173
3 memcmp [call site] 00174
3 memcmp [call site] 00175
3 decompress_peek_xz [function] [call site] 00176
4 hpeek [function] [call site] 00177
4 lzma_easy_decoder_memusage [call site] 00178
4 lzma_code [call site] 00179
4 lzma_end [call site] 00180
4 lzma_end [call site] 00181
3 memcmp [call site] 00182
3 hpeek [function] [call site] 00183
3 strcmp [call site] 00184
3 find_file_extension [function] [call site] 00185
4 strstr [call site] 00186
4 strlen [call site] 00187
3 tolower_c [function] [call site] 00188
3 memcmp [call site] 00189
3 memcmp [call site] 00190
3 memcmp [call site] 00191
3 memcmp [call site] 00192
3 memcmp [call site] 00193
3 memcmp [call site] 00194
3 memcmp [call site] 00195
3 strcmp [call site] 00196
3 memcmp [call site] 00197
3 parse_version [function] [call site] 00198
4 isdigit_c [function] [call site] 00199
4 isdigit_c [function] [call site] 00200
3 memcmp [call site] 00201
3 memcmp [call site] 00202
3 memcmp [call site] 00203
3 memcmp [call site] 00204
3 parse_version [function] [call site] 00205
3 memcmp [call site] 00206
3 cmp_nonblank [function] [call site] 00207
4 isspace_c [function] [call site] 00208
5 __ctype_b_loc [call site] 00209
3 memcmp [call site] 00210
3 is_fastaq [function] [call site] 00211
4 memchr [call site] 00212
4 is_text_only [function] [call site] 00213
4 toupper [call site] 00214
3 is_fastaq [function] [call site] 00215
3 parse_tabbed_text [function] [call site] 00216
4 isdigit_c [function] [call site] 00217
4 strchr [call site] 00218
4 isdigit_c [function] [call site] 00219
3 colmatch [function] [call site] 00220
3 colmatch [function] [call site] 00221
3 strstr [call site] 00222
3 colmatch [function] [call site] 00223
3 strstr [call site] 00224
3 colmatch [function] [call site] 00225
3 colmatch [function] [call site] 00226
3 is_text_only [function] [call site] 00227
2 __errno_location [call site] 00228
2 hopen_htsget_redirect [function] [call site] 00229
3 hfile_init [function] [call site] 00230
4 strchr [call site] 00231
4 hfile_destroy [function] [call site] 00232
3 parse_ga4gh_redirect_json [function] [call site] 00233
4 hts_json_fnext [function] [call site] 00234
5 hgetc [function] [call site] 00235
6 hgetc2 [function] [call site] 00236
7 refill_buffer [function] [call site] 00237
5 fscan_string [function] [call site] 00238
6 hgetc [function] [call site] 00239
6 hgetc [function] [call site] 00240
6 kputc [function] [call site] 00241
6 kputc [function] [call site] 00242
6 kputc [function] [call site] 00243
6 kputc [function] [call site] 00244
6 kputc [function] [call site] 00245
6 kputc [function] [call site] 00246
6 hgetc [function] [call site] 00247
6 dehex [function] [call site] 00248
6 hgetc [function] [call site] 00249
6 dehex [function] [call site] 00250
6 hgetc [function] [call site] 00251
6 dehex [function] [call site] 00252
6 hgetc [function] [call site] 00253
6 dehex [function] [call site] 00254
6 encode_utf8 [function] [call site] 00255
6 kputsn [function] [call site] 00256
6 kputc [function] [call site] 00257
5 kputsn [function] [call site] 00258
5 kputc [function] [call site] 00259
5 hpeek [function] [call site] 00260
5 strchr [call site] 00261
5 hgetc [function] [call site] 00262
5 kputc [function] [call site] 00263
5 token_type [function] [call site] 00264
6 strcmp [call site] 00265
6 strcmp [call site] 00266
6 strcmp [call site] 00267
4 hts_json_fnext [function] [call site] 00268
4 strcmp [call site] 00269
4 parse_ga4gh_body_json [function] [call site] 00270
5 hts_json_fnext [function] [call site] 00271
5 hts_json_fnext [function] [call site] 00272
5 strcmp [call site] 00273
5 hts_json_fnext [function] [call site] 00274
5 hts_json_fnext [function] [call site] 00275
5 hts_realloc_or_die [function] [call site] 00276
6 __errno_location [call site] 00277
6 realloc [call site] 00278
6 __errno_location [call site] 00279
6 hts_log [function] [call site] 00280
6 exit [call site] 00281
5 hts_json_fnext [function] [call site] 00282
5 hts_json_fnext [function] [call site] 00283
5 kputs [function] [call site] 00284
6 __errno_location [call site] 00285
6 strlen [call site] 00286
6 kputsn [function] [call site] 00287
5 kputs [function] [call site] 00288
5 hts_realloc_or_die [function] [call site] 00289
5 ks_release [function] [call site] 00290
5 hts_json_fskip_value [function] [call site] 00291
6 skip_value [function] [call site] 00292
5 strcmp [call site] 00293
5 hts_json_fnext [function] [call site] 00294
5 hts_log [function] [call site] 00295
5 hts_json_fskip_value [function] [call site] 00296
4 hts_json_fnext [function] [call site] 00297
3 free_all_parts [function] [call site] 00298
4 free_part [function] [call site] 00299
3 hfile_destroy [function] [call site] 00300
3 __errno_location [call site] 00301
2 hts_crypt4gh_redirect [function] [call site] 00302
3 strlen [call site] 00303
3 snprintf [call site] 00304
3 strchr [call site] 00305
3 hopen [function] [call site] 00306
2 hts_detect_format2 [function] [call site] 00307
2 strchr [call site] 00308
2 strchr [call site] 00309
2 strchr [call site] 00310
2 strchr [call site] 00311
2 strchr [call site] 00312
2 strchr [call site] 00313
2 strchr [call site] 00314
2 strchr [call site] 00315
2 abort [call site] 00316
2 format_category [function] [call site] 00317
2 __errno_location [call site] 00318
2 bgzf_hopen [function] [call site] 00319
3 bgzf_read_init [function] [call site] 00320
4 hpeek [function] [call site] 00321
4 calloc [call site] 00322
4 memcmp [call site] 00323
4 memcmp [call site] 00324
4 hts_log [function] [call site] 00325
4 razf_info [function] [call site] 00326
5 strcmp [call site] 00327
5 hseek [function] [call site] 00328
6 writebuffer_is_nonempty [function] [call site] 00329
6 flush_buffer [function] [call site] 00330
7 __errno_location [call site] 00331
6 htell [function] [call site] 00332
6 __errno_location [call site] 00333
6 __errno_location [call site] 00334
6 __errno_location [call site] 00335
5 hread [function] [call site] 00336
6 hread2 [function] [call site] 00337
7 __errno_location [call site] 00338
7 refill_buffer [function] [call site] 00339
5 ed_is_big [function] [call site] 00340
5 hts_log [function] [call site] 00341
5 hts_log [function] [call site] 00342
4 __errno_location [call site] 00343
4 kh_init_cache [function] [call site] 00344
5 calloc [call site] 00345
3 strchr [call site] 00346
3 bgzf_write_init [function] [call site] 00347
4 calloc [call site] 00348
4 mode2level [function] [call site] 00349
5 strchr [call site] 00350
4 strchr [call site] 00351
4 deflateInit2_ [call site] 00352
4 bgzf_zerr [function] [call site] 00353
5 __errno_location [call site] 00354
5 snprintf [call site] 00355
4 hts_log [function] [call site] 00356
4 __errno_location [call site] 00357
4 hts_log [function] [call site] 00358
3 __errno_location [call site] 00359
3 ed_is_big [function] [call site] 00360
2 cram_dopen [function] [call site] 00361
3 calloc [call site] 00362
3 cram_read_file_def [function] [call site] 00363
4 hread [function] [call site] 00364
4 memcmp [call site] 00365
4 hts_log [function] [call site] 00366
3 cram_init_tables [function] [call site] 00367
4 cram_init_varint [function] [call site] 00368
5 uint7_get_32 [function] [call site] 00369
6 var_get_u32 [function] [call site] 00370
5 sint7_get_32 [function] [call site] 00371
6 var_get_s32 [function] [call site] 00372
7 var_get_u32 [function] [call site] 00373
5 uint7_get_64 [function] [call site] 00374
6 var_get_u64 [function] [call site] 00375
5 sint7_get_64 [function] [call site] 00376
6 var_get_s64 [function] [call site] 00377
7 var_get_u64 [function] [call site] 00378
5 uint7_put_32 [function] [call site] 00379
6 var_put_u32 [function] [call site] 00380
7 var_put_u32_safe [function] [call site] 00381
5 sint7_put_32 [function] [call site] 00382
6 var_put_s32 [function] [call site] 00383
7 var_put_u32 [function] [call site] 00384
5 uint7_put_64 [function] [call site] 00385
6 var_put_u64 [function] [call site] 00386
7 var_put_u64_safe [function] [call site] 00387
5 sint7_put_64 [function] [call site] 00388
6 var_put_s64 [function] [call site] 00389
7 var_put_u64 [function] [call site] 00390
5 uint7_put_blk_32 [function] [call site] 00391
6 var_put_u32 [function] [call site] 00392
6 block_append [function] [call site] 00393
7 block_grow [function] [call site] 00394
8 block_resize [function] [call site] 00395
9 block_resize_exact [function] [call site] 00396
10 realloc [call site] 00397
5 sint7_put_blk_32 [function] [call site] 00398
6 var_put_s32 [function] [call site] 00399
6 block_append [function] [call site] 00400
5 uint7_put_blk_64 [function] [call site] 00401
6 var_put_u64 [function] [call site] 00402
6 block_append [function] [call site] 00403
5 sint7_put_blk_64 [function] [call site] 00404
6 var_put_s64 [function] [call site] 00405
6 block_append [function] [call site] 00406
5 uint7_size [function] [call site] 00407
6 var_size_u64 [function] [call site] 00408
5 uint7_decode_crc32 [function] [call site] 00409
6 hgetc [function] [call site] 00410
6 crc32 [call site] 00411
5 sint7_decode_crc32 [function] [call site] 00412
6 hgetc [function] [call site] 00413
6 crc32 [call site] 00414
5 uint7_decode_crc64 [function] [call site] 00415
6 hgetc [function] [call site] 00416
6 crc32 [call site] 00417
5 safe_itf8_get [function] [call site] 00418
5 safe_itf8_get [function] [call site] 00419
5 safe_ltf8_get [function] [call site] 00420
5 safe_ltf8_get [function] [call site] 00421
5 safe_itf8_put [function] [call site] 00422
6 itf8_put [function] [call site] 00423
5 safe_itf8_put [function] [call site] 00424
5 safe_ltf8_put [function] [call site] 00425
6 ltf8_put [function] [call site] 00426
5 safe_ltf8_put [function] [call site] 00427
5 itf8_put_blk [function] [call site] 00428
6 itf8_put [function] [call site] 00429
6 block_append [function] [call site] 00430
5 itf8_put_blk [function] [call site] 00431
5 ltf8_put_blk [function] [call site] 00432
6 ltf8_put [function] [call site] 00433
6 block_append [function] [call site] 00434
5 ltf8_put_blk [function] [call site] 00435
5 itf8_size [function] [call site] 00436
5 itf8_decode_crc [function] [call site] 00437
6 hgetc [function] [call site] 00438
6 hread [function] [call site] 00439
6 crc32 [call site] 00440
6 crc32 [call site] 00441
6 crc32 [call site] 00442
5 itf8_decode_crc [function] [call site] 00443
5 ltf8_decode_crc [function] [call site] 00444
6 hgetc [function] [call site] 00445
6 crc32 [call site] 00446
6 hgetc [function] [call site] 00447
6 crc32 [call site] 00448
6 hread [function] [call site] 00449
6 crc32 [call site] 00450
6 hread [function] [call site] 00451
6 crc32 [call site] 00452
6 hread [function] [call site] 00453
6 hread [function] [call site] 00454
6 crc32 [call site] 00455
6 hread [function] [call site] 00456
6 crc32 [call site] 00457
6 hread [function] [call site] 00458
6 crc32 [call site] 00459
6 hread [function] [call site] 00460
6 crc32 [call site] 00461
3 cram_read_SAM_hdr [function] [call site] 00462
4 int32_decode [function] [call site] 00463
5 hread [function] [call site] 00464
4 hread [function] [call site] 00465
4 cram_read_container [function] [call site] 00466
5 int32_decode [function] [call site] 00467
5 crc32 [call site] 00468
5 calloc [call site] 00469
5 __errno_location [call site] 00470
5 cram_free_container [function] [call site] 00471
6 cram_free_compression_header [function] [call site] 00472
7 kh_destroy_map [function] [call site] 00473
7 cram_free_block [function] [call site] 00474
7 kh_destroy_m_s2i [function] [call site] 00475
7 string_pool_destroy [function] [call site] 00476
6 cram_free_block [function] [call site] 00477
6 cram_free_slice [function] [call site] 00478
7 cram_free_block [function] [call site] 00479
7 cram_free_block [function] [call site] 00480
7 cram_free_slice_header [function] [call site] 00481
7 cram_free_block [function] [call site] 00482
7 cram_free_block [function] [call site] 00483
7 cram_free_block [function] [call site] 00484
7 cram_free_block [function] [call site] 00485
7 cram_free_block [function] [call site] 00486
7 cram_free_block [function] [call site] 00487
7 string_pool_destroy [function] [call site] 00488
7 kh_destroy_m_s2i [function] [call site] 00489
7 kh_destroy_m_s2i [function] [call site] 00490
6 cram_free_slice [function] [call site] 00491
6 cram_stats_free [function] [call site] 00492
7 kh_destroy_m_i2i [function] [call site] 00493
6 kh_destroy_m_tagmap [function] [call site] 00494
5 cram_free_container [function] [call site] 00495
5 int32_decode [function] [call site] 00496
5 cram_free_container [function] [call site] 00497
5 hts_log [function] [call site] 00498
5 cram_free_container [function] [call site] 00499
4 cram_free_container [function] [call site] 00500
4 cram_read_block [function] [call site] 00501
5 hgetc [function] [call site] 00502
5 crc32 [call site] 00503
5 hgetc [function] [call site] 00504
5 crc32 [call site] 00505
5 hread [function] [call site] 00506
5 hread [function] [call site] 00507
5 int32_decode [function] [call site] 00508
4 cram_free_container [function] [call site] 00509
4 cram_uncompress_block [function] [call site] 00510
5 crc32 [call site] 00511
5 hts_log [function] [call site] 00512
5 __assert_fail [call site] 00513
5 zlib_mem_inflate [function] [call site] 00514
6 inflateInit2_ [call site] 00515
6 hts_log [function] [call site] 00516
6 inflate [call site] 00517
6 hts_log [function] [call site] 00518
6 inflateEnd [call site] 00519
6 realloc [call site] 00520
6 inflateEnd [call site] 00521
6 inflateEnd [call site] 00522
5 BZ2_bzBuffToBuffDecompress [call site] 00523
5 lzma_mem_inflate [function] [call site] 00524
6 lzma_easy_decoder_memusage [call site] 00525
6 realloc [call site] 00526
6 lzma_code [call site] 00527
6 hts_log [function] [call site] 00528
6 lzma_code [call site] 00529
6 hts_log [function] [call site] 00530
6 realloc [call site] 00531
6 lzma_end [call site] 00532
6 lzma_end [call site] 00533
5 rans_uncompress [function] [call site] 00534
6 rans_uncompress_O1 [function] [call site] 00535
7 htscodecs_tls_calloc [function] [call site] 00536
8 htscodecs_tls_alloc [function] [call site] 00537
9 pthread_once [call site] 00538
9 htscodecs_tls_init [function] [call site] 00539
10 htscodecs_tls_free_all [function] [call site] 00540
11 fprintf [call site] 00541
9 strerror [call site] 00542
9 fprintf [call site] 00543
9 pthread_getspecific [call site] 00544
9 fprintf [call site] 00545
9 calloc [call site] 00546
7 RansDecSymbolInit32 [function] [call site] 00547
8 __assert_fail [call site] 00548
8 __assert_fail [call site] 00549
7 RansDecInit [function] [call site] 00550
7 RansDecInit [function] [call site] 00551
7 RansDecInit [function] [call site] 00552
7 RansDecInit [function] [call site] 00553
7 RansDecAdvanceStep [function] [call site] 00554
7 RansDecAdvanceStep [function] [call site] 00555
7 RansDecAdvanceStep [function] [call site] 00556
7 RansDecAdvanceStep [function] [call site] 00557
7 RansDecRenorm2 [function] [call site] 00558
7 RansDecRenorm2 [function] [call site] 00559
7 RansDecRenormSafe [function] [call site] 00560
7 RansDecRenormSafe [function] [call site] 00561
7 RansDecRenormSafe [function] [call site] 00562
7 RansDecRenormSafe [function] [call site] 00563
7 RansDecGet [function] [call site] 00564
7 RansDecRenormSafe [function] [call site] 00565
7 htscodecs_tls_free [function] [call site] 00566
8 pthread_getspecific [call site] 00567
8 fprintf [call site] 00568
8 fprintf [call site] 00569
6 rans_uncompress_O0 [function] [call site] 00570
7 RansDecInit [function] [call site] 00571
7 RansDecInit [function] [call site] 00572
7 RansDecInit [function] [call site] 00573
7 RansDecInit [function] [call site] 00574
7 RansDecRenorm2 [function] [call site] 00575
7 RansDecRenorm2 [function] [call site] 00576
7 RansDecRenormSafe [function] [call site] 00577
7 RansDecRenormSafe [function] [call site] 00578
7 RansDecRenormSafe [function] [call site] 00579
7 RansDecRenormSafe [function] [call site] 00580
5 fqz_decompress [function] [call site] 00581
6 uncompress_block_fqz2f [function] [call site] 00582
7 var_get_u32 [function] [call site] 00583
7 fqz_read_parameters [function] [call site] 00584
8 read_array [function] [call site] 00585
8 fqz_read_parameters1 [function] [call site] 00586
9 read_array [function] [call site] 00587
9 read_array [function] [call site] 00588
9 read_array [function] [call site] 00589
8 fqz_free_parameters [function] [call site] 00590
7 fqz_create_models [function] [call site] 00591
8 htscodecs_tls_alloc [function] [call site] 00592
8 SIMPLE_MODEL256_init [function] [call site] 00593
8 SIMPLE_MODEL256_init [function] [call site] 00594
8 SIMPLE_MODEL2_init [function] [call site] 00595
8 SIMPLE_MODEL2_init [function] [call site] 00596
8 SIMPLE_MODEL256_init [function] [call site] 00597
7 RC_SetInput [function] [call site] 00598
7 RC_StartDecode [function] [call site] 00599
7 realloc [call site] 00600
7 realloc [call site] 00601
7 decompress_new_read [function] [call site] 00602
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00603
9 RC_GetFreq [function] [call site] 00604
9 RC_Decode [function] [call site] 00605
9 SIMPLE_MODEL256_normalize [function] [call site] 00606
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00607
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00608
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00609
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00610
8 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00611
8 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00612
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00613
7 fqz_update_ctx [function] [call site] 00614
7 realloc [call site] 00615
7 RC_FinishDecode [function] [call site] 00616
7 fqz_destroy_models [function] [call site] 00617
8 htscodecs_tls_free [function] [call site] 00618
7 fqz_free_parameters [function] [call site] 00619
7 fqz_destroy_models [function] [call site] 00620
7 fqz_free_parameters [function] [call site] 00621
5 rans_uncompress_4x16 [function] [call site] 00622
6 rans_uncompress_to_4x16 [function] [call site] 00623
7 var_get_u32 [function] [call site] 00624
7 var_get_u32 [function] [call site] 00625
7 rans_uncompress_to_4x16 [function] [call site] 00626
8 unstripe [function] [call site] 00627
8 var_get_u32 [function] [call site] 00628
8 hts_unpack_meta [function] [call site] 00629
8 var_get_u32 [function] [call site] 00630
8 var_get_u32 [function] [call site] 00631
8 var_get_u32 [function] [call site] 00632
8 var_get_u32 [function] [call site] 00633
8 rans_dec_func [function] [call site] 00634
9 pthread_once [call site] 00635
9 htscodecs_tls_cpu_init [function] [call site] 00636
10 __get_cpuid_max [function] [call site] 00637
9 strerror [call site] 00638
9 fprintf [call site] 00639
9 fprintf [call site] 00640
9 rans_uncompress_O1_32x16_avx512 [function] [call site] 00641
10 htscodecs_tls_alloc [function] [call site] 00642
10 var_get_u32 [function] [call site] 00643
10 var_get_u32 [function] [call site] 00644
10 rans_uncompress_O0_4x16 [function] [call site] 00645
11 decode_freq [function] [call site] 00646
12 var_get_u32 [function] [call site] 00647
11 normalise_freq_shift [function] [call site] 00648
11 RansDecInit [function] [call site] 00649
11 RansDecInit [function] [call site] 00650
11 RansDecInit [function] [call site] 00651
11 RansDecInit [function] [call site] 00652
11 RansDecGet [function] [call site] 00653
11 RansDecGet [function] [call site] 00654
11 RansDecGet [function] [call site] 00655
11 RansDecGet [function] [call site] 00656
11 RansDecRenorm [function] [call site] 00657
11 RansDecRenorm [function] [call site] 00658
11 RansDecRenorm [function] [call site] 00659
11 RansDecRenorm [function] [call site] 00660
11 RansDecGet [function] [call site] 00661
11 RansDecRenormSafe [function] [call site] 00662
10 decode_freq1 [function] [call site] 00663
11 decode_alphabet [function] [call site] 00664
11 decode_freq_d [function] [call site] 00665
12 var_get_u32 [function] [call site] 00666
11 normalise_freq_shift [function] [call site] 00667
10 RansDecInit [function] [call site] 00668
10 transpose_and_copy [function] [call site] 00669
11 rot32_simd [function] [call site] 00670
12 _mm256_set_m128ix [function] [call site] 00671
12 _mm256_set_m128ix [function] [call site] 00672
12 _mm256_set_m128ix [function] [call site] 00673
12 _mm256_set_m128ix [function] [call site] 00674
10 RansDecRenormSafe [function] [call site] 00675
10 RansDecRenormSafe [function] [call site] 00676
10 transpose_and_copy [function] [call site] 00677
10 RansDecRenormSafe [function] [call site] 00678
10 RansDecRenormSafe [function] [call site] 00679
10 htscodecs_tls_free [function] [call site] 00680
10 htscodecs_tls_free [function] [call site] 00681
9 rans_uncompress_O1_32x16_avx2 [function] [call site] 00682
10 htscodecs_tls_alloc [function] [call site] 00683
10 var_get_u32 [function] [call site] 00684
10 var_get_u32 [function] [call site] 00685
10 rans_uncompress_O0_4x16 [function] [call site] 00686
10 decode_freq1 [function] [call site] 00687
10 RansDecInit [function] [call site] 00688
10 transpose_and_copy [function] [call site] 00689
11 rot32_simd [function] [call site] 00690
10 RansDecRenormSafe [function] [call site] 00691
10 RansDecRenormSafe [function] [call site] 00692
10 transpose_and_copy [function] [call site] 00693
10 RansDecRenormSafe [function] [call site] 00694
10 RansDecRenormSafe [function] [call site] 00695
10 htscodecs_tls_free [function] [call site] 00696
10 htscodecs_tls_free [function] [call site] 00697
9 rans_uncompress_O1_32x16_sse4 [function] [call site] 00698
10 htscodecs_tls_alloc [function] [call site] 00699
10 var_get_u32 [function] [call site] 00700
10 var_get_u32 [function] [call site] 00701
10 rans_uncompress_O0_4x16 [function] [call site] 00702
10 decode_freq1 [function] [call site] 00703
10 RansDecInit [function] [call site] 00704
10 _mm_i32gather_epi32x [function] [call site] 00705
10 _mm_i32gather_epi32x [function] [call site] 00706
10 _mm_i32gather_epi32x [function] [call site] 00707
10 _mm_i32gather_epi32x [function] [call site] 00708
10 _mm_i32gather_epi32x [function] [call site] 00709
10 _mm_i32gather_epi32x [function] [call site] 00710
10 _mm_i32gather_epi32x [function] [call site] 00711
10 _mm_i32gather_epi32x [function] [call site] 00712
10 transpose_and_copy [function] [call site] 00713
10 RansDecRenormSafe [function] [call site] 00714
10 RansDecRenormSafe [function] [call site] 00715
10 _mm_i32gather_epi32x [function] [call site] 00716
10 _mm_i32gather_epi32x [function] [call site] 00717
10 _mm_i32gather_epi32x [function] [call site] 00718
10 _mm_i32gather_epi32x [function] [call site] 00719
10 _mm_i32gather_epi32x [function] [call site] 00720
10 _mm_i32gather_epi32x [function] [call site] 00721
10 _mm_i32gather_epi32x [function] [call site] 00722
10 _mm_i32gather_epi32x [function] [call site] 00723
10 transpose_and_copy [function] [call site] 00724
10 RansDecRenormSafe [function] [call site] 00725
10 RansDecRenormSafe [function] [call site] 00726
10 htscodecs_tls_free [function] [call site] 00727
10 htscodecs_tls_free [function] [call site] 00728
9 rans_uncompress_O1_32x16 [function] [call site] 00729
10 htscodecs_tls_alloc [function] [call site] 00730
10 var_get_u32 [function] [call site] 00731
10 var_get_u32 [function] [call site] 00732
10 rans_uncompress_O0_4x16 [function] [call site] 00733
10 decode_freq1 [function] [call site] 00734
10 RansDecInit [function] [call site] 00735
10 RansDecRenorm [function] [call site] 00736
10 RansDecRenorm [function] [call site] 00737
10 RansDecRenorm [function] [call site] 00738
10 RansDecRenorm [function] [call site] 00739
10 RansDecRenormSafe [function] [call site] 00740
10 RansDecRenormSafe [function] [call site] 00741
10 RansDecRenormSafe [function] [call site] 00742
10 RansDecRenormSafe [function] [call site] 00743
10 RansDecRenormSafe [function] [call site] 00744
10 RansDecRenorm [function] [call site] 00745
10 RansDecRenorm [function] [call site] 00746
10 RansDecRenorm [function] [call site] 00747
10 RansDecRenorm [function] [call site] 00748
10 RansDecRenormSafe [function] [call site] 00749
10 RansDecRenormSafe [function] [call site] 00750
10 RansDecRenormSafe [function] [call site] 00751
10 RansDecRenormSafe [function] [call site] 00752
10 RansDecRenormSafe [function] [call site] 00753
10 htscodecs_tls_free [function] [call site] 00754
10 htscodecs_tls_free [function] [call site] 00755
9 rans_uncompress_O0_32x16_avx512 [function] [call site] 00756
10 decode_freq [function] [call site] 00757
10 normalise_freq_shift [function] [call site] 00758
10 rans_F_to_s3 [function] [call site] 00759
9 rans_uncompress_O0_32x16_avx2 [function] [call site] 00760
10 decode_freq [function] [call site] 00761
10 normalise_freq_shift [function] [call site] 00762
10 rans_F_to_s3 [function] [call site] 00763
10 RansDecInit [function] [call site] 00764
9 rans_uncompress_O0_32x16_sse4 [function] [call site] 00765
10 decode_freq [function] [call site] 00766
10 rans_F_to_s3 [function] [call site] 00767
10 RansDecInit [function] [call site] 00768
10 _mm_i32gather_epi32x [function] [call site] 00769
10 _mm_i32gather_epi32x [function] [call site] 00770
10 _mm_i32gather_epi32x [function] [call site] 00771
10 _mm_i32gather_epi32x [function] [call site] 00772
10 _mm_i32gather_epi32x [function] [call site] 00773
10 _mm_i32gather_epi32x [function] [call site] 00774
10 _mm_i32gather_epi32x [function] [call site] 00775
10 _mm_i32gather_epi32x [function] [call site] 00776
9 rans_uncompress_O0_32x16 [function] [call site] 00777
10 decode_freq [function] [call site] 00778
10 normalise_freq_shift [function] [call site] 00779
10 rans_F_to_s3 [function] [call site] 00780
10 RansDecInit [function] [call site] 00781
10 RansDecRenorm [function] [call site] 00782
10 RansDecRenorm [function] [call site] 00783
10 RansDecRenorm [function] [call site] 00784
10 RansDecRenorm [function] [call site] 00785
10 RansDecRenorm [function] [call site] 00786
10 RansDecRenorm [function] [call site] 00787
10 RansDecRenorm [function] [call site] 00788
10 RansDecRenormSafe [function] [call site] 00789
10 RansDecRenormSafe [function] [call site] 00790
10 RansDecRenormSafe [function] [call site] 00791
10 RansDecRenormSafe [function] [call site] 00792
8 rans_dec_func [function] [call site] 00793
8 hts_rle_decode [function] [call site] 00794
9 var_get_u32 [function] [call site] 00795
8 hts_unpack [function] [call site] 00796
5 arith_uncompress_to [function] [call site] 00797
6 var_get_u32 [function] [call site] 00798
6 var_get_u32 [function] [call site] 00799
6 arith_uncompress_to [function] [call site] 00800
7 unstripe [function] [call site] 00801
7 var_get_u32 [function] [call site] 00802
7 hts_unpack_meta [function] [call site] 00803
7 var_get_u32 [function] [call site] 00804
7 BZ2_bzBuffToBuffDecompress [call site] 00805
7 arith_uncompress_O1_RLE [function] [call site] 00806
8 htscodecs_tls_alloc [function] [call site] 00807
8 SIMPLE_MODEL256_init [function] [call site] 00808
8 htscodecs_tls_alloc [function] [call site] 00809
8 htscodecs_tls_free [function] [call site] 00810
8 SIMPLE_MODEL258_init [function] [call site] 00811
8 RC_SetInput [function] [call site] 00812
8 RC_StartDecode [function] [call site] 00813
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00814
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00815
8 RC_FinishDecode [function] [call site] 00816
8 htscodecs_tls_free [function] [call site] 00817
8 htscodecs_tls_free [function] [call site] 00818
7 arith_uncompress_O0_RLE [function] [call site] 00819
8 SIMPLE_MODEL256_init [function] [call site] 00820
8 htscodecs_tls_alloc [function] [call site] 00821
8 SIMPLE_MODEL258_init [function] [call site] 00822
8 RC_SetInput [function] [call site] 00823
8 RC_StartDecode [function] [call site] 00824
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00825
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00826
8 RC_FinishDecode [function] [call site] 00827
8 htscodecs_tls_free [function] [call site] 00828
7 arith_uncompress_O1 [function] [call site] 00829
8 htscodecs_tls_alloc [function] [call site] 00830
8 SIMPLE_MODEL256_init [function] [call site] 00831
8 RC_SetInput [function] [call site] 00832
8 RC_StartDecode [function] [call site] 00833
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00834
8 RC_FinishDecode [function] [call site] 00835
8 htscodecs_tls_free [function] [call site] 00836
7 arith_uncompress_O0 [function] [call site] 00837
8 SIMPLE_MODEL256_init [function] [call site] 00838
8 RC_SetInput [function] [call site] 00839
8 RC_StartDecode [function] [call site] 00840
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00841
7 hts_unpack [function] [call site] 00842
5 tok3_decode_names [function] [call site] 00843
6 create_context [function] [call site] 00844
7 htscodecs_tls_alloc [function] [call site] 00845
6 uncompressed_size [function] [call site] 00846
7 var_get_u32 [function] [call site] 00847
7 var_get_u32 [function] [call site] 00848
6 uncompress [function] [call site] 00849
7 var_get_u32 [function] [call site] 00850
7 arith_decode [function] [call site] 00851
8 var_get_u32 [function] [call site] 00852
8 arith_uncompress_to [function] [call site] 00853
7 rans_decode [function] [call site] 00854
8 var_get_u32 [function] [call site] 00855
8 rans_uncompress_to_4x16 [function] [call site] 00856
6 decode_name [function] [call site] 00857
7 decode_token_type [function] [call site] 00858
7 decode_token_int [function] [call site] 00859
7 strlen [call site] 00860
7 strcpy [call site] 00861
7 strlen [call site] 00862
7 decode_token_type [function] [call site] 00863
7 decode_token_char [function] [call site] 00864
7 decode_token_alpha [function] [call site] 00865
7 decode_token_int1 [function] [call site] 00866
7 decode_token_int [function] [call site] 00867
7 append_uint32_fixed [function] [call site] 00868
7 decode_token_int1 [function] [call site] 00869
7 append_uint32_fixed [function] [call site] 00870
7 decode_token_int [function] [call site] 00871
7 append_uint32_var [function] [call site] 00872
7 decode_token_int1 [function] [call site] 00873
7 append_uint32_var [function] [call site] 00874
7 append_uint32_var [function] [call site] 00875
7 append_uint32_fixed [function] [call site] 00876
7 realloc [call site] 00877
6 free_context [function] [call site] 00878
7 pool_destroy [function] [call site] 00879
7 htscodecs_tls_free [function] [call site] 00880
6 free_context [function] [call site] 00881
4 cram_free_container [function] [call site] 00882
4 cram_free_block [function] [call site] 00883
4 int32_get_blk [function] [call site] 00884
4 cram_free_container [function] [call site] 00885
4 cram_free_block [function] [call site] 00886
4 cram_free_container [function] [call site] 00887
4 cram_free_block [function] [call site] 00888
4 cram_free_block [function] [call site] 00889
4 cram_read_block [function] [call site] 00890
4 cram_free_container [function] [call site] 00891
4 cram_free_block [function] [call site] 00892
4 cram_free_container [function] [call site] 00893
4 hread [function] [call site] 00894
4 cram_free_container [function] [call site] 00895
4 cram_free_container [function] [call site] 00896
4 sam_hdr_init [function] [call site] 00897
5 calloc [call site] 00898
4 sam_hdr_add_lines [function] [call site] 00899
5 sam_hdr_fill_hrecs [function] [call site] 00900
6 sam_hrecs_new [function] [call site] 00901
7 calloc [call site] 00902
7 kh_init_sam_hrecs_t [function] [call site] 00903
8 calloc [call site] 00904
7 kh_init_m_s2i [function] [call site] 00905
8 calloc [call site] 00906
7 kh_init_m_s2i [function] [call site] 00907
7 kh_init_m_s2i [function] [call site] 00908
7 pool_create [function] [call site] 00909
8 next_power_2 [function] [call site] 00910
7 pool_create [function] [call site] 00911
7 string_pool_create [function] [call site] 00912
7 sam_hrecs_init_type_order [function] [call site] 00913
8 calloc [call site] 00914
7 kh_destroy_sam_hrecs_t [function] [call site] 00915
7 pool_destroy [function] [call site] 00916
7 pool_destroy [function] [call site] 00917
7 string_pool_destroy [function] [call site] 00918
6 sam_hrecs_refs_from_targets_array [function] [call site] 00919
7 hts_log [function] [call site] 00920
7 realloc [call site] 00921
7 string_dup [function] [call site] 00922
8 strlen [call site] 00923
8 string_ndup [function] [call site] 00924
9 string_alloc [function] [call site] 00925
10 new_string_pool [function] [call site] 00926
11 realloc [call site] 00927
7 kh_get_s2i [function] [call site] 00928
8 __ac_X31_hash_string [function] [call site] 00929
8 strcmp [call site] 00930
7 kh_put_m_s2i [function] [call site] 00931
8 kh_resize_m_s2i [function] [call site] 00932
9 __ac_X31_hash_string [function] [call site] 00933
7 hts_log [function] [call site] 00934
7 __errno_location [call site] 00935
7 hts_log [function] [call site] 00936
7 kh_get_m_s2i [function] [call site] 00937
7 kh_del_m_s2i [function] [call site] 00938
6 sam_hrecs_free [function] [call site] 00939
7 kh_destroy_sam_hrecs_t [function] [call site] 00940
7 kh_destroy_m_s2i [function] [call site] 00941
7 kh_destroy_m_s2i [function] [call site] 00942
7 kh_destroy_m_s2i [function] [call site] 00943
7 pool_destroy [function] [call site] 00944
7 pool_destroy [function] [call site] 00945
7 string_pool_destroy [function] [call site] 00946
6 sam_hrecs_parse_lines [function] [call site] 00947
7 strlen [call site] 00948
7 sam_hrecs_error [function] [call site] 00949
8 hts_log [function] [call site] 00950
7 sam_hrecs_error [function] [call site] 00951
7 isalpha_c [function] [call site] 00952
8 __ctype_b_loc [call site] 00953
7 sam_hrecs_error [function] [call site] 00954
7 TYPEKEY [function] [call site] 00955
7 pool_alloc [function] [call site] 00956
8 new_pool [function] [call site] 00957
9 realloc [call site] 00958
7 kh_put_sam_hrecs_t [function] [call site] 00959
8 kh_resize_sam_hrecs_t [function] [call site] 00960
7 sam_hrecs_global_list_add [function] [call site] 00961
8 TYPEKEY [function] [call site] 00962
7 __assert_fail [call site] 00963
7 TYPEKEY [function] [call site] 00964
7 sam_hrecs_error [function] [call site] 00965
7 pool_alloc [function] [call site] 00966
7 string_ndup [function] [call site] 00967
7 sam_hrecs_error [function] [call site] 00968
7 sam_hrecs_error [function] [call site] 00969
7 pool_alloc [function] [call site] 00970
7 string_ndup [function] [call site] 00971
7 sam_hrecs_update_hashes [function] [call site] 00972
8 TYPEKEY [function] [call site] 00973
8 __assert_fail [call site] 00974
8 strtoll [call site] 00975
8 hts_log [function] [call site] 00976
8 kh_get_m_s2i [function] [call site] 00977
8 sam_hrecs_update [function] [call site] 00978
9 sam_hrecs_vupdate [function] [call site] 00979
10 sam_hrecs_find_key [function] [call site] 00980
10 pool_alloc [function] [call site] 00981
10 strlen [call site] 00982
10 string_alloc [function] [call site] 00983
10 snprintf [call site] 00984
8 sam_hrecs_add_ref_altnames [function] [call site] 00985
9 kstrtok [function] [call site] 00986
9 string_ndup [function] [call site] 00987
9 kh_put_m_s2i [function] [call site] 00988
9 hts_log [function] [call site] 00989
8 strcmp [call site] 00990
8 sam_hrecs_add_ref_altnames [function] [call site] 00991
8 strcmp [call site] 00992
8 hts_log [function] [call site] 00993
8 realloc [call site] 00994
8 kh_put_m_s2i [function] [call site] 00995
8 sam_hrecs_add_ref_altnames [function] [call site] 00996
8 TYPEKEY [function] [call site] 00997
8 sam_hrecs_find_key [function] [call site] 00998
8 hts_log [function] [call site] 00999
8 __assert_fail [call site] 01000
8 kh_get_m_s2i [function] [call site] 01001
8 __assert_fail [call site] 01002
8 hts_log [function] [call site] 01003
8 realloc [call site] 01004
8 kh_put_m_s2i [function] [call site] 01005
8 TYPEKEY [function] [call site] 01006
8 realloc [call site] 01007
8 __assert_fail [call site] 01008
8 hts_log [function] [call site] 01009
8 kh_get_m_s2i [function] [call site] 01010
8 kh_put_m_s2i [function] [call site] 01011
8 realloc [call site] 01012
6 sam_hrecs_free [function] [call site] 01013
6 add_stub_ref_sq_lines [function] [call site] 01014
7 snprintf [call site] 01015
7 sam_hrecs_add [function] [call site] 01016
8 sam_hrecs_vadd [function] [call site] 01017
9 TYPEKEY [function] [call site] 01018
9 strncmp [call site] 01019
9 sam_hrecs_find_type_id [function] [call site] 01020
10 kh_get_m_s2i [function] [call site] 01021
10 kh_get_m_s2i [function] [call site] 01022
10 kh_get_m_s2i [function] [call site] 01023
10 TYPEKEY [function] [call site] 01024
9 sam_hrecs_vupdate [function] [call site] 01025
9 pool_alloc [function] [call site] 01026
9 kh_put_sam_hrecs_t [function] [call site] 01027
9 __assert_fail [call site] 01028
9 sam_hrecs_global_list_add [function] [call site] 01029
9 __assert_fail [call site] 01030
9 __assert_fail [call site] 01031
9 __assert_fail [call site] 01032
9 __assert_fail [call site] 01033
9 strncmp [call site] 01034
9 pool_alloc [function] [call site] 01035
9 strncmp [call site] 01036
9 string_alloc [function] [call site] 01037
9 snprintf [call site] 01038
9 strlen [call site] 01039
9 string_ndup [function] [call site] 01040
9 strncmp [call site] 01041
9 pool_alloc [function] [call site] 01042
9 strncmp [call site] 01043
9 string_alloc [function] [call site] 01044
9 snprintf [call site] 01045
9 strlen [call site] 01046
9 string_ndup [function] [call site] 01047
9 TYPEKEY [function] [call site] 01048
9 sam_hrecs_update_hashes [function] [call site] 01049
9 strncmp [call site] 01050
7 hts_log [function] [call site] 01051
6 sam_hrecs_free [function] [call site] 01052
6 rebuild_target_arrays [function] [call site] 01053
7 sam_hdr_update_target_arrays [function] [call site] 01054
8 realloc [call site] 01055
8 realloc [call site] 01056
8 strcmp [call site] 01057
8 kh_get_s2i [function] [call site] 01058
8 kh_del_s2i [function] [call site] 01059
8 kh_init_s2i [function] [call site] 01060
8 kh_put_s2i [function] [call site] 01061
9 kh_resize_s2i [function] [call site] 01062
8 kh_get_s2i [function] [call site] 01063
8 kh_del_s2i [function] [call site] 01064
5 sam_hrecs_parse_lines [function] [call site] 01065
5 rebuild_target_arrays [function] [call site] 01066
5 redact_header_text [function] [call site] 01067
6 __assert_fail [call site] 01068
4 sam_hdr_destroy [function] [call site] 01069
5 sam_hrecs_free [function] [call site] 01070
3 cram_free_file_def [function] [call site] 01071
3 calloc [call site] 01072
3 strncpy [call site] 01073
3 cram_init_tables [function] [call site] 01074
3 strrchr [call site] 01075
3 refs_create [function] [call site] 01076
4 calloc [call site] 01077
4 string_pool_create [function] [call site] 01078
4 kh_init_refs [function] [call site] 01079
5 calloc [call site] 01080
4 pthread_mutex_init [call site] 01081
4 refs_free [function] [call site] 01082
5 string_pool_destroy [function] [call site] 01083
5 ref_entry_free_seq [function] [call site] 01084
6 mfclose [function] [call site] 01085
7 mfflush [function] [call site] 01086
8 fwrite [call site] 01087
8 fflush [call site] 01088
8 fseek [call site] 01089
8 fwrite [call site] 01090
8 fileno [call site] 01091
7 fclose [call site] 01092
7 mfdestroy [function] [call site] 01093
5 kh_destroy_refs [function] [call site] 01094
5 bgzf_close [function] [call site] 01095
6 bgzf_flush [function] [call site] 01096
7 mt_queue [function] [call site] 01097
8 pthread_mutex_lock [call site] 01098
8 pool_alloc [function] [call site] 01099
8 pthread_mutex_unlock [call site] 01100
8 hts_tpool_dispatch3 [function] [call site] 01101
9 pthread_mutex_lock [call site] 01102
9 pthread_mutex_unlock [call site] 01103
9 __errno_location [call site] 01104
9 pthread_mutex_unlock [call site] 01105
9 wake_next_worker [function] [call site] 01106
10 pthread_mutex_lock [call site] 01107
10 __assert_fail [call site] 01108
10 pthread_cond_signal [call site] 01109
10 pthread_mutex_unlock [call site] 01110
9 pthread_mutex_unlock [call site] 01111
8 bgzf_encode_level0_func [function] [call site] 01112
9 u16_to_le [function] [call site] 01113
9 u16_to_le [function] [call site] 01114
9 u16_to_le [function] [call site] 01115
9 crc32 [call site] 01116
9 u32_to_le [function] [call site] 01117
9 u32_to_le [function] [call site] 01118
8 hts_tpool_dispatch3 [function] [call site] 01119
8 bgzf_encode_func [function] [call site] 01120
9 bgzf_compress [function] [call site] 01121
10 u16_to_le [function] [call site] 01122
10 u16_to_le [function] [call site] 01123
10 bgzf_zerr [function] [call site] 01124
10 hts_log [function] [call site] 01125
10 deflate [call site] 01126
10 bgzf_zerr [function] [call site] 01127
10 hts_log [function] [call site] 01128
10 deflateEnd [call site] 01129
10 bgzf_zerr [function] [call site] 01130
10 hts_log [function] [call site] 01131
10 packInt16 [function] [call site] 01132
10 crc32 [call site] 01133
10 packInt32 [function] [call site] 01134
10 packInt32 [function] [call site] 01135
8 job_cleanup [function] [call site] 01136
9 pthread_mutex_lock [call site] 01137
9 pool_free [function] [call site] 01138
9 pthread_mutex_unlock [call site] 01139
8 pthread_mutex_lock [call site] 01140
8 pthread_mutex_unlock [call site] 01141
7 mt_flush_queue [function] [call site] 01142
8 pthread_mutex_lock [call site] 01143
8 hts_tpool_process_is_shutdown [function] [call site] 01144
9 pthread_mutex_lock [call site] 01145
9 pthread_mutex_unlock [call site] 01146
8 pthread_mutex_unlock [call site] 01147
8 usleep [call site] 01148
8 pthread_mutex_lock [call site] 01149
8 pthread_mutex_unlock [call site] 01150
8 hts_tpool_process_flush [function] [call site] 01151
9 pthread_mutex_lock [call site] 01152
9 pthread_cond_signal [call site] 01153
9 pthread_cond_wait [call site] 01154
9 gettimeofday [call site] 01155
9 pthread_cond_timedwait [call site] 01156
9 pthread_mutex_unlock [call site] 01157
7 pthread_mutex_lock [call site] 01158
7 pthread_mutex_unlock [call site] 01159
7 bgzf_index_add_block [function] [call site] 01160
8 realloc [call site] 01161
7 deflate_block [function] [call site] 01162
8 bgzf_compress [function] [call site] 01163
8 bgzf_gzip_compress [function] [call site] 01164
9 deflate [call site] 01165
9 bgzf_zerr [function] [call site] 01166
9 hts_log [function] [call site] 01167
9 hts_log [function] [call site] 01168
7 bgzf_zerr [function] [call site] 01169
7 hts_log [function] [call site] 01170
7 hwrite [function] [call site] 01171
8 hfile_set_blksize [function] [call site] 01172
9 realloc [call site] 01173
8 hwrite2 [function] [call site] 01174
9 flush_buffer [function] [call site] 01175
9 __errno_location [call site] 01176
8 hwrite2 [function] [call site] 01177
7 hts_log [function] [call site] 01178
6 bgzf_close_mt [function] [call site] 01179
7 mt_destroy [function] [call site] 01180
8 pthread_mutex_lock [call site] 01181
8 pthread_cond_signal [call site] 01182
8 hts_tpool_wake_dispatch [function] [call site] 01183
9 pthread_cond_signal [call site] 01184
9 pthread_mutex_unlock [call site] 01185
8 pthread_mutex_unlock [call site] 01186
8 hts_tpool_process_is_shutdown [function] [call site] 01187
8 hts_tpool_process_destroy [function] [call site] 01188
9 pthread_mutex_lock [call site] 01189
9 pthread_mutex_unlock [call site] 01190
9 hts_tpool_process_reset [function] [call site] 01191
10 pthread_mutex_lock [call site] 01192
10 pthread_mutex_unlock [call site] 01193
10 hts_tpool_delete_result [function] [call site] 01194
10 hts_tpool_process_flush [function] [call site] 01195
10 pthread_mutex_lock [call site] 01196
10 pthread_cond_signal [call site] 01197
10 pthread_mutex_unlock [call site] 01198
10 hts_tpool_delete_result [function] [call site] 01199
9 hts_tpool_process_detach_locked [function] [call site] 01200
9 hts_tpool_process_shutdown_locked [function] [call site] 01201
10 pthread_cond_broadcast [call site] 01202
10 pthread_cond_broadcast [call site] 01203
9 pthread_mutex_unlock [call site] 01204
9 pthread_cond_destroy [call site] 01205
9 pthread_cond_destroy [call site] 01206
9 pthread_cond_destroy [call site] 01207
9 pthread_mutex_unlock [call site] 01208
8 pthread_join [call site] 01209
8 pthread_mutex_destroy [call site] 01210
8 pthread_mutex_destroy [call site] 01211
8 pthread_mutex_destroy [call site] 01212
8 pthread_cond_destroy [call site] 01213
8 pool_free [function] [call site] 01214
8 hts_tpool_destroy [function] [call site] 01215
9 pthread_mutex_lock [call site] 01216
9 pthread_cond_signal [call site] 01217
9 pthread_mutex_unlock [call site] 01218
9 pthread_join [call site] 01219
9 pthread_mutex_destroy [call site] 01220
9 pthread_cond_destroy [call site] 01221
8 pool_destroy [function] [call site] 01222
8 fflush [call site] 01223
6 deflate_block [function] [call site] 01224
6 bgzf_zerr [function] [call site] 01225
6 hts_log [function] [call site] 01226
6 bgzf_close_mt [function] [call site] 01227
6 hwrite [function] [call site] 01228
6 hflush [function] [call site] 01229
7 flush_buffer [function] [call site] 01230
7 __errno_location [call site] 01231
6 hts_log [function] [call site] 01232
6 bgzf_close_mt [function] [call site] 01233
6 inflateEnd [call site] 01234
6 deflateEnd [call site] 01235
6 bgzf_zerr [function] [call site] 01236
6 hts_log [function] [call site] 01237
6 hclose [function] [call site] 01238
7 writebuffer_is_nonempty [function] [call site] 01239
7 __errno_location [call site] 01240
7 hfile_destroy [function] [call site] 01241
7 __errno_location [call site] 01242
6 bgzf_index_destroy [function] [call site] 01243
6 free_cache [function] [call site] 01244
7 kh_destroy_cache [function] [call site] 01245
5 pthread_mutex_destroy [call site] 01246
3 cram_new_metrics [function] [call site] 01247
4 calloc [call site] 01248
3 kh_init_m_metrics [function] [call site] 01249
4 calloc [call site] 01250
3 refs_from_header [function] [call site] 01251
4 sam_hdr_fill_hrecs [function] [call site] 01252
4 realloc [call site] 01253
4 kh_get_refs [function] [call site] 01254
5 __ac_X31_hash_string [function] [call site] 01255
4 calloc [call site] 01256
4 string_dup [function] [call site] 01257
4 sam_hrecs_find_type_id [function] [call site] 01258
4 sam_hrecs_find_key [function] [call site] 01259
4 string_dup [function] [call site] 01260
4 kh_put_refs [function] [call site] 01261
5 kh_resize_refs [function] [call site] 01262
2 cram_set_option [function] [call site] 01263
3 cram_set_voption [function] [call site] 01264
4 __errno_location [call site] 01265
4 strdup [call site] 01266
4 refs_free [function] [call site] 01267
4 cram_seek_to_refpos [function] [call site] 01268
5 cram_index_query [function] [call site] 01269
5 cram_seek [function] [call site] 01270
6 cram_drain_rqueue [function] [call site] 01271
7 hts_tpool_process_empty [function] [call site] 01272
8 pthread_mutex_lock [call site] 01273
7 hts_tpool_next_result_wait [function] [call site] 01274
8 hts_tpool_next_result_locked [function] [call site] 01275
9 pthread_cond_signal [call site] 01276
9 wake_next_worker [function] [call site] 01277
8 pthread_mutex_unlock [call site] 01278
8 hts_tpool_process_destroy [function] [call site] 01279
8 pthread_cond_timedwait [call site] 01280
8 pthread_mutex_unlock [call site] 01281
7 hts_tpool_result_data [function] [call site] 01282
7 cram_free_container [function] [call site] 01283
7 cram_free_slice [function] [call site] 01284
7 hts_tpool_delete_result [function] [call site] 01285
7 cram_free_container [function] [call site] 01286
7 cram_free_slice [function] [call site] 01287
7 cram_free_container [function] [call site] 01288
6 hseek [function] [call site] 01289
6 hread [function] [call site] 01290
5 cram_seek [function] [call site] 01291
5 pthread_mutex_unlock [call site] 01292
5 cram_free_container [function] [call site] 01293
5 cram_free_container [function] [call site] 01294
5 pthread_mutex_lock [call site] 01295
5 pthread_mutex_unlock [call site] 01296
4 pthread_mutex_lock [call site] 01297
4 pthread_mutex_unlock [call site] 01298
4 pthread_mutex_lock [call site] 01299
4 pthread_mutex_unlock [call site] 01300
4 cram_load_reference [function] [call site] 01301
5 refs_load_fai [function] [call site] 01302
6 strlen [call site] 01303
6 refs_create [function] [call site] 01304
6 bgzf_close [function] [call site] 01305
6 strstr [call site] 01306
6 string_ndup [function] [call site] 01307
6 snprintf [call site] 01308
6 strcmp [call site] 01309
6 string_ndup [function] [call site] 01310
6 snprintf [call site] 01311
6 string_dup [function] [call site] 01312
6 snprintf [call site] 01313
6 bgzf_open_ref [function] [call site] 01314
7 hisremote [function] [call site] 01315
8 find_scheme_handler [function] [call site] 01316
7 snprintf [call site] 01317
7 access [call site] 01318
7 fai_build [function] [call site] 01319
8 fai_build3 [function] [call site] 01320
9 fai_build3_core [function] [call site] 01321
10 bgzf_open [function] [call site] 01322
11 strchr [call site] 01323
11 hopen [function] [call site] 01324
11 bgzf_read_init [function] [call site] 01325
11 hclose_abruptly [function] [call site] 01326
12 __errno_location [call site] 01327
12 hfile_destroy [function] [call site] 01328
12 __errno_location [call site] 01329
11 hopen [function] [call site] 01330
11 bgzf_write_init [function] [call site] 01331
11 __errno_location [call site] 01332
11 ed_is_big [function] [call site] 01333
10 hts_log [function] [call site] 01334
10 bgzf_index_build_init [function] [call site] 01335
11 bgzf_index_destroy [function] [call site] 01336
11 calloc [call site] 01337
10 hts_log [function] [call site] 01338
10 fai_build_core [function] [call site] 01339
11 calloc [call site] 01340
11 kh_init_s [function] [call site] 01341
12 calloc [call site] 01342
11 bgzf_getc [function] [call site] 01343
12 bgzf_read_block [function] [call site] 01344
13 hts_tpool_next_result_wait [function] [call site] 01345
13 hts_tpool_result_data [function] [call site] 01346
13 mt_destroy [function] [call site] 01347
13 hts_tpool_delete_result [function] [call site] 01348
13 hts_log [function] [call site] 01349
13 hts_tpool_delete_result [function] [call site] 01350
13 hts_tpool_delete_result [function] [call site] 01351
13 bgzf_index_add_block [function] [call site] 01352
13 pthread_mutex_lock [call site] 01353
13 pool_free [function] [call site] 01354
13 pthread_mutex_unlock [call site] 01355
13 hts_tpool_delete_result [function] [call site] 01356
13 bgzf_htell [function] [call site] 01357
14 pthread_mutex_lock [call site] 01358
14 htell [function] [call site] 01359
13 hread [function] [call site] 01360
13 __errno_location [call site] 01361
13 hts_log [function] [call site] 01362
13 inflate_gzip_block [function] [call site] 01363
14 hread [function] [call site] 01364
14 inflate [call site] 01365
14 bgzf_zerr [function] [call site] 01366
14 hts_log [function] [call site] 01367
14 hpeek [function] [call site] 01368
14 inflateReset [call site] 01369
14 bgzf_zerr [function] [call site] 01370
14 hts_log [function] [call site] 01371
14 hts_log [function] [call site] 01372
13 hts_log [function] [call site] 01373
13 load_block_from_cache [function] [call site] 01374
14 kh_get_cache [function] [call site] 01375
14 hseek [function] [call site] 01376
14 hts_log [function] [call site] 01377
14 exit [call site] 01378
13 hread [function] [call site] 01379
13 hts_log [function] [call site] 01380
13 check_header [function] [call site] 01381
14 unpackInt16 [function] [call site] 01382
14 unpackInt16 [function] [call site] 01383
13 hts_log [function] [call site] 01384
13 hread [function] [call site] 01385
13 calloc [call site] 01386
13 inflateInit2_ [call site] 01387
13 bgzf_zerr [function] [call site] 01388
13 hts_log [function] [call site] 01389
13 inflate_gzip_block [function] [call site] 01390
13 hts_log [function] [call site] 01391
13 unpackInt16 [function] [call site] 01392
13 hts_log [function] [call site] 01393
13 hread [function] [call site] 01394
13 hts_log [function] [call site] 01395
13 inflate_block [function] [call site] 01396
14 le_to_u32 [function] [call site] 01397
14 bgzf_uncompress [function] [call site] 01398
15 inflateInit2_ [call site] 01399
15 bgzf_zerr [function] [call site] 01400
15 hts_log [function] [call site] 01401
15 inflate [call site] 01402
15 bgzf_zerr [function] [call site] 01403
15 hts_log [function] [call site] 01404
15 inflateEnd [call site] 01405
15 bgzf_zerr [function] [call site] 01406
15 hts_log [function] [call site] 01407
15 bgzf_zerr [function] [call site] 01408
15 hts_log [function] [call site] 01409
15 crc32 [call site] 01410
15 hts_log [function] [call site] 01411
13 bgzf_zerr [function] [call site] 01412
13 hts_log [function] [call site] 01413
13 bgzf_htell [function] [call site] 01414
13 bgzf_index_add_block [function] [call site] 01415
13 cache_block [function] [call site] 01416
14 kh_del_cache [function] [call site] 01417
14 kh_put_cache [function] [call site] 01418
15 kh_resize_cache [function] [call site] 01419
12 bgzf_htell [function] [call site] 01420
11 hts_log [function] [call site] 01421
11 hts_log [function] [call site] 01422
11 bgzf_getc [function] [call site] 01423
11 hts_log [function] [call site] 01424
11 __ctype_b_loc [call site] 01425
11 fai_insert_index [function] [call site] 01426
12 hts_log [function] [call site] 01427
12 strdup [call site] 01428
12 kh_put_s [function] [call site] 01429
13 kh_resize_s [function] [call site] 01430
14 __ac_X31_hash_string [function] [call site] 01431
12 hts_log [function] [call site] 01432
12 realloc [call site] 01433
12 hts_log [function] [call site] 01434
11 __ctype_b_loc [call site] 01435
11 kputc [function] [call site] 01436
11 bgzf_getc [function] [call site] 01437
11 kputsn [function] [call site] 01438
11 hts_log [function] [call site] 01439
11 bgzf_getc [function] [call site] 01440
11 bgzf_utell [function] [call site] 01441
11 bgzf_getc [function] [call site] 01442
11 bgzf_utell [function] [call site] 01443
11 hts_log [function] [call site] 01444
11 __ctype_b_loc [call site] 01445
11 bgzf_getc [function] [call site] 01446
11 hts_log [function] [call site] 01447
11 bgzf_getc [function] [call site] 01448
11 bgzf_utell [function] [call site] 01449
11 hts_log [function] [call site] 01450
11 hts_log [function] [call site] 01451
11 __ctype_b_loc [call site] 01452
11 bgzf_getc [function] [call site] 01453
11 hts_log [function] [call site] 01454
11 hts_log [function] [call site] 01455
11 hts_log [function] [call site] 01456
11 fai_insert_index [function] [call site] 01457
11 fai_destroy [function] [call site] 01458
12 kh_destroy_s [function] [call site] 01459
12 bgzf_close [function] [call site] 01460
10 hts_log [function] [call site] 01461
10 ksprintf [function] [call site] 01462
10 ksprintf [function] [call site] 01463
10 bgzf_index_dump [function] [call site] 01464
11 hts_log [function] [call site] 01465
11 __errno_location [call site] 01466
11 get_name_suffix [function] [call site] 01467
12 strlen [call site] 01468
12 snprintf [call site] 01469
11 hopen [function] [call site] 01470
11 bgzf_index_dump_hfile [function] [call site] 01471
12 hts_log [function] [call site] 01472
12 __errno_location [call site] 01473
12 bgzf_flush [function] [call site] 01474
12 hwrite_uint64 [function] [call site] 01475
13 ed_is_big [function] [call site] 01476
13 hwrite [function] [call site] 01477
12 hwrite_uint64 [function] [call site] 01478
12 hwrite_uint64 [function] [call site] 01479
12 __errno_location [call site] 01480
12 hts_log [function] [call site] 01481
11 hclose [function] [call site] 01482
11 __errno_location [call site] 01483
11 hts_log [function] [call site] 01484
11 hclose_abruptly [function] [call site] 01485
10 hts_log [function] [call site] 01486
10 bgzf_close [function] [call site] 01487
10 __errno_location [call site] 01488
10 hts_log [function] [call site] 01489
10 hopen [function] [call site] 01490
10 __errno_location [call site] 01491
10 hts_log [function] [call site] 01492
10 fai_save [function] [call site] 01493
11 kh_get_s [function] [call site] 01494
11 __assert_fail [call site] 01495
11 snprintf [call site] 01496
11 snprintf [call site] 01497
11 hputs [function] [call site] 01498
12 strlen [call site] 01499
12 hputs2 [function] [call site] 01500
13 hwrite2 [function] [call site] 01501
11 hputs [function] [call site] 01502
10 __errno_location [call site] 01503
10 hts_log [function] [call site] 01504
10 hclose [function] [call site] 01505
10 __errno_location [call site] 01506
10 hts_log [function] [call site] 01507
10 fai_destroy [function] [call site] 01508
10 __errno_location [call site] 01509
10 bgzf_close [function] [call site] 01510
10 fai_destroy [function] [call site] 01511
10 __errno_location [call site] 01512
7 bgzf_open [function] [call site] 01513
7 perror [call site] 01514
7 bgzf_index_load [function] [call site] 01515
8 get_name_suffix [function] [call site] 01516
8 hopen [function] [call site] 01517
8 bgzf_index_load_hfile [function] [call site] 01518
9 calloc [call site] 01519
9 hread_uint64 [function] [call site] 01520
10 hread [function] [call site] 01521
10 ed_is_big [function] [call site] 01522
9 hread_uint64 [function] [call site] 01523
9 hread_uint64 [function] [call site] 01524
9 __errno_location [call site] 01525
9 hts_log [function] [call site] 01526
8 hclose [function] [call site] 01527
8 hts_log [function] [call site] 01528
8 hclose_abruptly [function] [call site] 01529
7 hts_log [function] [call site] 01530
7 bgzf_close [function] [call site] 01531
6 hts_log [function] [call site] 01532
6 hopen [function] [call site] 01533
6 hts_log [function] [call site] 01534
6 perror [call site] 01535
6 hgets [function] [call site] 01536
7 __errno_location [call site] 01537
7 hgetln [function] [call site] 01538
8 hgetdelim [function] [call site] 01539
9 writebuffer_is_nonempty [function] [call site] 01540
9 __errno_location [call site] 01541
9 memchr [call site] 01542
9 refill_buffer [function] [call site] 01543
6 isspace_c [function] [call site] 01544
6 string_dup [function] [call site] 01545
6 isspace_c [function] [call site] 01546
6 strtoll [call site] 01547
6 isspace_c [function] [call site] 01548
6 strtoll [call site] 01549
6 isspace_c [function] [call site] 01550
6 strtol [call site] 01551
6 isspace_c [function] [call site] 01552
6 strtol [call site] 01553
6 kh_put_refs [function] [call site] 01554
6 realloc [call site] 01555
6 hclose [function] [call site] 01556
6 hclose_abruptly [function] [call site] 01557
6 refs_free [function] [call site] 01558
5 sanitise_SQ_lines [function] [call site] 01559
6 kh_get_refs [function] [call site] 01560
6 strcmp [call site] 01561
6 hts_log [function] [call site] 01562
5 refs_free [function] [call site] 01563
5 refs_create [function] [call site] 01564
5 refs_from_header [function] [call site] 01565
5 refs2id [function] [call site] 01566
6 calloc [call site] 01567
6 kh_get_refs [function] [call site] 01568
6 hts_log [function] [call site] 01569
4 __isoc99_sscanf [call site] 01570
4 hts_log [function] [call site] 01571
4 hts_log [function] [call site] 01572
4 __errno_location [call site] 01573
4 hts_log [function] [call site] 01574
4 cram_init_tables [function] [call site] 01575
4 hts_tpool_init [function] [call site] 01576
5 pthread_mutexattr_init [call site] 01577
5 pthread_mutexattr_settype [call site] 01578
5 pthread_mutex_init [call site] 01579
5 pthread_mutexattr_destroy [call site] 01580
5 pthread_mutex_lock [call site] 01581
5 pthread_attr_init [call site] 01582
5 pthread_attr_getstacksize [call site] 01583
5 pthread_attr_setstacksize [call site] 01584
5 pthread_create [call site] 01585
5 tpool_worker [function] [call site] 01586
6 pthread_mutex_lock [call site] 01587
6 pthread_cond_wait [call site] 01588
6 __assert_fail [call site] 01589
6 pthread_cond_broadcast [call site] 01590
6 hts_tpool_add_result [function] [call site] 01591
7 pthread_cond_signal [call site] 01592
7 pthread_mutex_unlock [call site] 01593
7 hts_tpool_process_shutdown [function] [call site] 01594
8 pthread_mutex_lock [call site] 01595
8 hts_tpool_process_shutdown_locked [function] [call site] 01596
7 __assert_fail [call site] 01597
7 pthread_cond_broadcast [call site] 01598
6 pthread_mutex_lock [call site] 01599
6 hts_tpool_process_destroy [function] [call site] 01600
6 pthread_mutex_unlock [call site] 01601
6 hts_tpool_process_shutdown_locked [function] [call site] 01602
6 pthread_mutex_unlock [call site] 01603
5 pthread_mutex_unlock [call site] 01604
5 pthread_attr_destroy [call site] 01605
5 __errno_location [call site] 01606
5 __errno_location [call site] 01607
5 hts_log [function] [call site] 01608
5 pthread_mutex_unlock [call site] 01609
5 pthread_join [call site] 01610
5 pthread_cond_destroy [call site] 01611
5 pthread_mutex_destroy [call site] 01612
5 pthread_attr_destroy [call site] 01613
5 __errno_location [call site] 01614
4 hts_tpool_process_init [function] [call site] 01615
5 pthread_cond_init [call site] 01616
5 pthread_cond_init [call site] 01617
5 pthread_cond_init [call site] 01618
5 hts_tpool_process_attach [function] [call site] 01619
6 __assert_fail [call site] 01620
4 pthread_mutex_init [call site] 01621
4 pthread_mutex_init [call site] 01622
4 pthread_mutex_init [call site] 01623
4 pthread_mutex_init [call site] 01624
4 hts_tpool_size [function] [call site] 01625
4 hts_tpool_process_init [function] [call site] 01626
4 pthread_mutex_init [call site] 01627
4 pthread_mutex_init [call site] 01628
4 pthread_mutex_init [call site] 01629
4 pthread_mutex_init [call site] 01630
4 hts_log [function] [call site] 01631
4 __errno_location [call site] 01632
2 bgzf_hopen [function] [call site] 01633
2 __errno_location [call site] 01634
2 hts_process_opts [function] [call site] 01635
3 hts_parse_opt_list [function] [call site] 01636
4 strncpy [call site] 01637
4 hts_opt_add [function] [call site] 01638
5 strdup [call site] 01639
5 strchr [call site] 01640
5 atoi [call site] 01641
5 strcmp [call site] 01642
5 atoi [call site] 01643
5 strcmp [call site] 01644
5 strcmp [call site] 01645
5 strcmp [call site] 01646
5 atoi [call site] 01647
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5 atoi [call site] 01649
5 strcmp [call site] 01650
5 strcmp [call site] 01651
5 atoi [call site] 01652
5 strcmp [call site] 01653
5 strcmp [call site] 01654
5 atoi [call site] 01655
5 strcmp [call site] 01656
5 strcmp [call site] 01657
5 atoi [call site] 01658
5 strcmp [call site] 01659
5 strcmp [call site] 01660
5 atoi [call site] 01661
5 strcmp [call site] 01662
5 strcmp [call site] 01663
5 atoi [call site] 01664
5 strcmp [call site] 01665
5 strcmp [call site] 01666
5 atoi [call site] 01667
5 strcmp [call site] 01668
5 strcmp [call site] 01669
5 strcmp [call site] 01670
5 atoi [call site] 01671
5 strcmp [call site] 01672
5 atoi [call site] 01673
5 strcmp [call site] 01674
5 strcmp [call site] 01675
5 atoi [call site] 01676
5 strcmp [call site] 01677
5 strcmp [call site] 01678
5 strcmp [call site] 01679
5 strcmp [call site] 01680
5 strcmp [call site] 01681
5 strcmp [call site] 01682
5 strcmp [call site] 01683
5 strcmp [call site] 01684
5 strcmp [call site] 01685
5 strcmp [call site] 01686
5 strcmp [call site] 01687
5 strcmp [call site] 01688
5 strcmp [call site] 01689
5 strcmp [call site] 01690
5 strcmp [call site] 01691
5 strcmp [call site] 01692
5 hts_log [function] [call site] 01693
5 strcmp [call site] 01694
5 strcmp [call site] 01695
5 strtol [call site] 01696
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5 strtol [call site] 01698
5 strcmp [call site] 01699
5 strcmp [call site] 01700
5 atoi [call site] 01701
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5 strcmp [call site] 01703
5 strcmp [call site] 01704
5 strcmp [call site] 01705
5 strcmp [call site] 01706
5 strtol [call site] 01707
5 strcmp [call site] 01708
5 strcmp [call site] 01709
5 strcmp [call site] 01710
5 strcmp [call site] 01711
5 strcmp [call site] 01712
5 strcmp [call site] 01713
5 strcmp [call site] 01714
5 strcmp [call site] 01715
5 strcmp [call site] 01716
5 strcmp [call site] 01717
5 strcmp [call site] 01718
5 hts_log [function] [call site] 01719
3 hts_opt_apply [function] [call site] 01720
4 hts_set_opt [function] [call site] 01721
5 hts_set_threads [function] [call site] 01722
6 sam_set_threads [function] [call site] 01723
7 hts_tpool_init [function] [call site] 01724
7 sam_set_thread_pool [function] [call site] 01725
8 sam_state_create [function] [call site] 01726
9 calloc [call site] 01727
8 pthread_mutex_init [call site] 01728
8 pthread_mutex_init [call site] 01729
8 pthread_cond_init [call site] 01730
8 hts_tpool_size [function] [call site] 01731
8 hts_tpool_process_init [function] [call site] 01732
8 sam_state_destroy [function] [call site] 01733
9 pthread_mutex_lock [call site] 01734
9 pthread_cond_signal [call site] 01735
9 hts_tpool_wake_dispatch [function] [call site] 01736
9 hts_tpool_wake_dispatch [function] [call site] 01737
9 pthread_mutex_unlock [call site] 01738
9 usleep [call site] 01739
9 pthread_mutex_lock [call site] 01740
9 pthread_mutex_unlock [call site] 01741
9 hts_tpool_dispatch [function] [call site] 01742
10 hts_tpool_dispatch3 [function] [call site] 01743
9 sam_format_worker [function] [call site] 01744
10 pthread_mutex_lock [call site] 01745
10 pthread_mutex_unlock [call site] 01746
10 calloc [call site] 01747
10 sam_state_err [function] [call site] 01748
11 pthread_mutex_lock [call site] 01749
11 pthread_mutex_unlock [call site] 01750
10 sam_format1_append [function] [call site] 01751
11 kputsn_ [function] [call site] 01752
12 ks_resize [function] [call site] 01753
11 kputc_ [function] [call site] 01754
12 ks_resize [function] [call site] 01755
11 kputw [function] [call site] 01756
12 ks_resize [function] [call site] 01757
12 kputuw [function] [call site] 01758
13 ks_resize [function] [call site] 01759
13 ks_resize [function] [call site] 01760
11 kputs [function] [call site] 01761
11 kputc_ [function] [call site] 01762
11 kputsn_ [function] [call site] 01763
11 kputll [function] [call site] 01764
12 ks_resize [function] [call site] 01765
11 kputw [function] [call site] 01766
11 kputw [function] [call site] 01767
11 kputc_ [function] [call site] 01768
11 kputc_ [function] [call site] 01769
11 kputc_ [function] [call site] 01770
11 kputsn_ [function] [call site] 01771
11 kputsn_ [function] [call site] 01772
11 kputs [function] [call site] 01773
11 kputc_ [function] [call site] 01774
11 kputll [function] [call site] 01775
11 kputll [function] [call site] 01776
11 ks_resize [function] [call site] 01777
11 nibble2base [function] [call site] 01778
11 kputsn_ [function] [call site] 01779
11 kputc_ [function] [call site] 01780
11 sam_format_aux1 [function] [call site] 01781
12 kputsn_ [function] [call site] 01782
12 kputc_ [function] [call site] 01783
12 kputsn_ [function] [call site] 01784
12 kputw [function] [call site] 01785
12 kputsn_ [function] [call site] 01786
12 kputw [function] [call site] 01787
12 kputsn_ [function] [call site] 01788
12 le_to_u16 [function] [call site] 01789
12 kputuw [function] [call site] 01790
12 kputsn_ [function] [call site] 01791
12 le_to_i16 [function] [call site] 01792
13 le_to_u16 [function] [call site] 01793
12 kputw [function] [call site] 01794
12 kputsn_ [function] [call site] 01795
12 le_to_u32 [function] [call site] 01796
12 kputuw [function] [call site] 01797
12 kputsn_ [function] [call site] 01798
12 le_to_i32 [function] [call site] 01799
13 le_to_u32 [function] [call site] 01800
12 kputw [function] [call site] 01801
12 kputsn_ [function] [call site] 01802
12 kputc_ [function] [call site] 01803
12 le_to_float [function] [call site] 01804
13 le_to_u32 [function] [call site] 01805
12 ksprintf [function] [call site] 01806
12 le_to_double [function] [call site] 01807
13 le_to_u64 [function] [call site] 01808
12 ksprintf [function] [call site] 01809
12 kputc_ [function] [call site] 01810
12 kputc_ [function] [call site] 01811
12 kputc_ [function] [call site] 01812
12 le_to_u32 [function] [call site] 01813
12 kputsn_ [function] [call site] 01814
12 kputc [function] [call site] 01815
12 ks_expand [function] [call site] 01816
12 kputw [function] [call site] 01817
12 ks_expand [function] [call site] 01818
12 kputuw [function] [call site] 01819
12 ks_expand [function] [call site] 01820
12 le_to_i16 [function] [call site] 01821
12 kputw [function] [call site] 01822
12 ks_expand [function] [call site] 01823
12 le_to_u16 [function] [call site] 01824
12 kputuw [function] [call site] 01825
12 ks_expand [function] [call site] 01826
12 le_to_i32 [function] [call site] 01827
12 kputw [function] [call site] 01828
12 ks_expand [function] [call site] 01829
12 le_to_u32 [function] [call site] 01830
12 kputuw [function] [call site] 01831
12 ks_expand [function] [call site] 01832
12 le_to_float [function] [call site] 01833
12 kputd [function] [call site] 01834
12 __errno_location [call site] 01835
12 hts_log [function] [call site] 01836
12 __errno_location [call site] 01837
11 kputsn [function] [call site] 01838
11 hts_log [function] [call site] 01839
11 __errno_location [call site] 01840
11 hts_log [function] [call site] 01841
11 __errno_location [call site] 01842
10 __errno_location [call site] 01843
10 sam_state_err [function] [call site] 01844
10 kputc [function] [call site] 01845
10 pthread_mutex_lock [call site] 01846
10 pthread_mutex_unlock [call site] 01847
9 hts_tpool_process_flush [function] [call site] 01848
9 pthread_mutex_lock [call site] 01849
9 pthread_mutex_unlock [call site] 01850
9 hts_tpool_process_empty [function] [call site] 01851
9 usleep [call site] 01852
9 pthread_mutex_lock [call site] 01853
9 hts_tpool_process_is_shutdown [function] [call site] 01854
9 pthread_mutex_unlock [call site] 01855
9 hts_tpool_process_shutdown [function] [call site] 01856
9 pthread_join [call site] 01857
9 hts_tpool_process_destroy [function] [call site] 01858
9 hts_tpool_destroy [function] [call site] 01859
9 pthread_mutex_destroy [call site] 01860
9 pthread_mutex_destroy [call site] 01861
9 pthread_cond_destroy [call site] 01862
9 sam_free_sp_bams [function] [call site] 01863
9 sam_free_sp_bams [function] [call site] 01864
9 bam_hdr_destroy [function] [call site] 01865
10 sam_hdr_destroy [function] [call site] 01866
8 bgzf_thread_pool [function] [call site] 01867
9 calloc [call site] 01868
9 hts_tpool_size [function] [call site] 01869
9 hts_tpool_process_init [function] [call site] 01870
9 hts_tpool_process_ref_incr [function] [call site] 01871
10 pthread_mutex_unlock [call site] 01872
9 pool_create [function] [call site] 01873
9 pthread_mutex_init [call site] 01874
9 pthread_mutex_init [call site] 01875
9 pthread_mutex_init [call site] 01876
9 pthread_cond_init [call site] 01877
9 pthread_create [call site] 01878
6 hts_get_bgzfp [function] [call site] 01879
6 bgzf_mt [function] [call site] 01880
7 hts_tpool_init [function] [call site] 01881
7 bgzf_thread_pool [function] [call site] 01882
7 hts_tpool_destroy [function] [call site] 01883
6 hts_set_opt [function] [call site] 01884
7 hts_hfile [function] [call site] 01885
8 bgzf_hfile [function] [call site] 01886
8 cram_hfile [function] [call site] 01887
8 bgzf_hfile [function] [call site] 01888
7 hfile_set_blksize [function] [call site] 01889
7 hts_log [function] [call site] 01890
7 hts_log [function] [call site] 01891
7 hts_set_thread_pool [function] [call site] 01892
8 sam_set_thread_pool [function] [call site] 01893
8 hts_get_bgzfp [function] [call site] 01894
8 bgzf_thread_pool [function] [call site] 01895
8 hts_set_opt [function] [call site] 01896
9 hts_set_cache_size [function] [call site] 01897
10 hts_get_bgzfp [function] [call site] 01898
10 bgzf_set_cache_size [function] [call site] 01899
9 fastq_state_set [function] [call site] 01900
10 fastq_state_init [function] [call site] 01901
11 calloc [call site] 01902
11 strcpy [call site] 01903
10 strcmp [call site] 01904
10 kh_init_tag [function] [call site] 01905
11 calloc [call site] 01906
10 strlen [call site] 01907
10 hts_log [function] [call site] 01908
10 kh_put_tag [function] [call site] 01909
11 kh_resize_tag [function] [call site] 01910
10 strncpy [call site] 01911
9 fastq_state_set [function] [call site] 01912
9 fastq_state_set [function] [call site] 01913
9 cram_set_option [function] [call site] 01914
9 hts_set_filter_expression [function] [call site] 01915
10 hts_filter_free [function] [call site] 01916
11 regfree [call site] 01917
10 hts_filter_init [function] [call site] 01918
11 calloc [call site] 01919
11 strlen [call site] 01920
11 strcpy [call site] 01921
9 cram_set_voption [function] [call site] 01922
4 hts_set_opt [function] [call site] 01923
3 hts_opt_free [function] [call site] 01924
3 hts_opt_free [function] [call site] 01925
2 hclose_abruptly [function] [call site] 01926
2 hts_log [function] [call site] 01927
2 hclose_abruptly [function] [call site] 01928
1 hclose [function] [call site] 01929
1 abort [call site] 01930
1 view_sam [function] [call site] 01931
2 hts_open [function] [call site] 01932
3 hts_open_format [function] [call site] 01933
4 strncpy [call site] 01934
4 strchr [call site] 01935
4 strchr [call site] 01936
4 strdup [call site] 01937
4 hopen [function] [call site] 01938
4 hts_hopen [function] [call site] 01939
4 hts_opt_apply [function] [call site] 01940
4 __errno_location [call site] 01941
4 hts_log [function] [call site] 01942
4 hclose_abruptly [function] [call site] 01943
2 abort [call site] 01944
2 sam_hdr_read [function] [call site] 01945
3 __errno_location [call site] 01946
3 bam_hdr_read [function] [call site] 01947
4 bgzf_check_EOF [function] [call site] 01948
5 pthread_mutex_lock [call site] 01949
5 pthread_cond_signal [call site] 01950
5 hts_tpool_wake_dispatch [function] [call site] 01951
5 pthread_mutex_unlock [call site] 01952
5 pthread_cond_wait [call site] 01953
5 pthread_cond_signal [call site] 01954
5 abort [call site] 01955
5 pthread_mutex_unlock [call site] 01956
5 bgzf_check_EOF_common [function] [call site] 01957
6 htell [function] [call site] 01958
6 hseek [function] [call site] 01959
6 hclearerr [function] [call site] 01960
6 hclearerr [function] [call site] 01961
6 hread [function] [call site] 01962
6 hseek [function] [call site] 01963
4 hts_log [function] [call site] 01964
4 bgzf_read [function] [call site] 01965
5 bgzf_read_block [function] [call site] 01966
5 hts_log [function] [call site] 01967
5 bgzf_htell [function] [call site] 01968
5 hts_log [function] [call site] 01969
5 bgzf_htell [function] [call site] 01970
4 memcmp [call site] 01971
4 hts_log [function] [call site] 01972
4 sam_hdr_init [function] [call site] 01973
4 bgzf_read [function] [call site] 01974
4 le_to_u32 [function] [call site] 01975
4 bgzf_read [function] [call site] 01976
4 ed_swap_4p [function] [call site] 01977
5 ed_swap_4 [function] [call site] 01978
4 calloc [call site] 01979
4 calloc [call site] 01980
4 bgzf_read [function] [call site] 01981
4 ed_swap_4p [function] [call site] 01982
4 bgzf_read [function] [call site] 01983
4 realloc [call site] 01984
4 bgzf_read [function] [call site] 01985
4 ed_swap_4p [function] [call site] 01986
4 hts_log [function] [call site] 01987
4 hts_log [function] [call site] 01988
4 hts_log [function] [call site] 01989
4 hts_log [function] [call site] 01990
4 sam_hdr_destroy [function] [call site] 01991
3 sam_hdr_dup [function] [call site] 01992
4 sam_hdr_init [function] [call site] 01993
4 sam_hdr_dup_sdict [function] [call site] 01994
5 kh_init_s2i [function] [call site] 01995
5 kh_get_s2i [function] [call site] 01996
5 kh_put_s2i [function] [call site] 01997
4 sam_hrecs_rebuild_text [function] [call site] 01998
5 kputsn [function] [call site] 01999
5 sam_hrecs_rebuild_lines [function] [call site] 02000
6 kputsn [function] [call site] 02001
6 build_header_line [function] [call site] 02002
7 kputc_ [function] [call site] 02003
7 kputsn [function] [call site] 02004
7 kputc_ [function] [call site] 02005
7 kputsn [function] [call site] 02006
6 kputc [function] [call site] 02007
4 ks_release [function] [call site] 02008
4 ks_release [function] [call site] 02009
4 sam_hdr_update_target_arrays [function] [call site] 02010
4 sam_hdr_destroy [function] [call site] 02011
3 sam_hdr_create [function] [call site] 02012
4 sam_hdr_init [function] [call site] 02013
4 kh_init_s2i [function] [call site] 02014
4 hts_getline [function] [call site] 02015
5 hts_log [function] [call site] 02016
5 abort [call site] 02017
5 kgetline2 [function] [call site] 02018
6 ks_resize [function] [call site] 02019
5 hgetln [function] [call site] 02020
5 herrno [function] [call site] 02021
5 __errno_location [call site] 02022
5 bgzf_getline [function] [call site] 02023
6 bgzf_read_block [function] [call site] 02024
6 ks_expand [function] [call site] 02025
6 bgzf_htell [function] [call site] 02026
5 abort [call site] 02027
4 strncmp [call site] 02028
4 strncmp [call site] 02029
4 hts_log [function] [call site] 02030
4 calloc [call site] 02031
4 strtoll [call site] 02032
4 kh_put_s2i [function] [call site] 02033
4 hts_log [function] [call site] 02034
4 kh_init_s2i [function] [call site] 02035
4 kh_put_s2i [function] [call site] 02036
4 hts_log [function] [call site] 02037
4 warn_if_known_stderr [function] [call site] 02038
5 strstr [call site] 02039
5 known_stderr [function] [call site] 02040
6 hts_log [function] [call site] 02041
6 hts_log [function] [call site] 02042
5 strstr [call site] 02043
5 known_stderr [function] [call site] 02044
5 strstr [call site] 02045
5 known_stderr [function] [call site] 02046
4 hts_log [function] [call site] 02047
4 warn_if_known_stderr [function] [call site] 02048
4 valid_sam_header_type [function] [call site] 02049
4 hts_log [function] [call site] 02050
4 warn_if_known_stderr [function] [call site] 02051
4 kputsn [function] [call site] 02052
4 kputc [function] [call site] 02053
4 bgzf_peek [function] [call site] 02054
5 bgzf_read_block [function] [call site] 02055
5 hts_log [function] [call site] 02056
4 hpeek [function] [call site] 02057
4 strstr [call site] 02058
4 hopen [function] [call site] 02059
4 kgetline [function] [call site] 02060
5 ks_resize [function] [call site] 02061
5 strlen [call site] 02062
4 hgets [function] [call site] 02063
4 strchr [call site] 02064
4 calloc [call site] 02065
4 kh_put_s2i [function] [call site] 02066
4 strtoll [call site] 02067
4 hts_log [function] [call site] 02068
4 kh_init_s2i [function] [call site] 02069
4 kh_put_s2i [function] [call site] 02070
4 kputs [function] [call site] 02071
4 kputsn [function] [call site] 02072
4 kputs [function] [call site] 02073
4 kputll [function] [call site] 02074
4 kputc [function] [call site] 02075
4 ks_free [function] [call site] 02076
5 ks_initialize [function] [call site] 02077
4 hclose [function] [call site] 02078
4 hts_log [function] [call site] 02079
4 kh_destroy_s2i [function] [call site] 02080
4 kputsn [function] [call site] 02081
4 ks_release [function] [call site] 02082
4 sam_hdr_sanitise [function] [call site] 02083
5 hts_log [function] [call site] 02084
5 sam_hdr_destroy [function] [call site] 02085
5 hts_log [function] [call site] 02086
5 hts_log [function] [call site] 02087
5 hts_log [function] [call site] 02088
5 sam_hdr_destroy [function] [call site] 02089
5 sam_hdr_destroy [function] [call site] 02090
4 sam_hdr_destroy [function] [call site] 02091
4 ks_free [function] [call site] 02092
4 kh_destroy_s2i [function] [call site] 02093
4 kh_destroy_s2i [function] [call site] 02094
3 sam_hdr_init [function] [call site] 02095
3 __errno_location [call site] 02096
3 __errno_location [call site] 02097
2 hts_close_or_abort [function] [call site] 02098
3 hts_close [function] [call site] 02099
4 bgzf_close [function] [call site] 02100
4 cram_eof [function] [call site] 02101
4 hts_log [function] [call site] 02102
4 cram_close [function] [call site] 02103
5 cram_update_curr_slice [function] [call site] 02104
5 cram_flush_container_mt [function] [call site] 02105
6 pthread_mutex_lock [call site] 02106
6 reset_metrics [function] [call site] 02107
7 pthread_mutex_unlock [call site] 02108
7 hts_tpool_process_flush [function] [call site] 02109
7 pthread_mutex_lock [call site] 02110
6 pthread_mutex_unlock [call site] 02111
6 cram_flush_container [function] [call site] 02112
7 cram_encode_container [function] [call site] 02113
8 pthread_mutex_lock [call site] 02114
8 pthread_mutex_unlock [call site] 02115
8 cram_get_ref [function] [call site] 02116
9 pthread_mutex_lock [call site] 02117
9 hts_log [function] [call site] 02118
9 pthread_mutex_unlock [call site] 02119
9 hts_log [function] [call site] 02120
9 pthread_mutex_unlock [call site] 02121
9 hts_log [function] [call site] 02122
9 pthread_mutex_unlock [call site] 02123
9 pthread_mutex_lock [call site] 02124
9 hts_log [function] [call site] 02125
9 cram_populate_ref [function] [call site] 02126
10 getenv [call site] 02127
10 getenv [call site] 02128
10 hts_log [function] [call site] 02129
10 get_cache_basedir [function] [call site] 02130
11 getenv [call site] 02131
11 getenv [call site] 02132
11 getenv [call site] 02133
11 getenv [call site] 02134
10 snprintf [call site] 02135
10 snprintf [call site] 02136
10 hts_log [function] [call site] 02137
10 sam_hrecs_find_type_id [function] [call site] 02138
10 sam_hrecs_find_key [function] [call site] 02139
10 hts_log [function] [call site] 02140
10 expand_cache_path [function] [call site] 02141
11 strchr [call site] 02142
11 strncpy [call site] 02143
11 strlen [call site] 02144
11 strcpy [call site] 02145
11 strtol [call site] 02146
11 strlen [call site] 02147
11 strncpy [call site] 02148
11 strlen [call site] 02149
11 strcpy [call site] 02150
11 strlen [call site] 02151
11 strcpy [call site] 02152
10 stat [call site] 02153
10 bgzf_open [function] [call site] 02154
10 string_dup [function] [call site] 02155
10 bgzf_close [function] [call site] 02156
10 open_path_mfile [function] [call site] 02157
11 getenv [call site] 02158
11 tokenise_search_path [function] [call site] 02159
12 strlen [call site] 02160
12 strncmp [call site] 02161
12 strncmp [call site] 02162
12 strncmp [call site] 02163
12 strncmp [call site] 02164
11 find_file_url [function] [call site] 02165
12 expand_path [function] [call site] 02166
13 strlen [call site] 02167
13 strlen [call site] 02168
13 strchr [call site] 02169
13 strtol [call site] 02170
13 strncpy [call site] 02171
13 strncpy [call site] 02172
13 strlen [call site] 02173
13 strlen [call site] 02174
13 strcpy [call site] 02175
12 __errno_location [call site] 02176
12 __errno_location [call site] 02177
12 hts_log [function] [call site] 02178
12 mfcreate [function] [call site] 02179
12 hread [function] [call site] 02180
12 mfwrite [function] [call site] 02181
12 hclose_abruptly [function] [call site] 02182
12 hclose [function] [call site] 02183
12 hts_log [function] [call site] 02184
12 mrewind [function] [call site] 02185
12 mfdestroy [function] [call site] 02186
11 strncmp [call site] 02187
11 strncmp [call site] 02188
11 strncmp [call site] 02189
11 find_file_url [function] [call site] 02190
11 find_file_dir [function] [call site] 02191
12 expand_path [function] [call site] 02192
12 is_file [function] [call site] 02193
13 stat [call site] 02194
12 mfopen [function] [call site] 02195
13 fopen [call site] 02196
13 mfreopen [function] [call site] 02197
14 strchr [call site] 02198
14 strchr [call site] 02199
14 strchr [call site] 02200
14 strchr [call site] 02201
14 strchr [call site] 02202
14 mfcreate [function] [call site] 02203
14 mfmmap [function] [call site] 02204
14 mfload [function] [call site] 02205
15 stat [call site] 02206
15 fread [call site] 02207
14 fseek [call site] 02208
14 mfcreate [function] [call site] 02209
14 hts_log [function] [call site] 02210
11 strlen [call site] 02211
11 strrchr [call site] 02212
11 find_file_dir [function] [call site] 02213
10 mfsteal [function] [call site] 02214
11 mfdetach [function] [call site] 02215
12 mfflush [function] [call site] 02216
12 fclose [call site] 02217
11 mfdestroy [function] [call site] 02218
10 sam_hrecs_find_key [function] [call site] 02219
10 strncmp [call site] 02220
10 bgzf_close [function] [call site] 02221
10 refs_load_fai [function] [call site] 02222
10 sanitise_SQ_lines [function] [call site] 02223
10 bgzf_close [function] [call site] 02224
10 refs2id [function] [call site] 02225
10 is_directory [function] [call site] 02226
11 stat [call site] 02227
10 hts_log [function] [call site] 02228
10 expand_cache_path [function] [call site] 02229
10 hts_log [function] [call site] 02230
10 mkdir_prefix [function] [call site] 02231
11 strrchr [call site] 02232
11 is_directory [function] [call site] 02233
11 mkdir [call site] 02234
11 chmod [call site] 02235
11 mkdir_prefix [function] [call site] 02236
12 mkdir [call site] 02237
12 chmod [call site] 02238
10 hts_open_tmpfile [function] [call site] 02239
11 getpid [call site] 02240
11 time [call site] 02241
11 ks_clear [function] [call site] 02242
11 ksprintf [function] [call site] 02243
11 hopen [function] [call site] 02244
11 __errno_location [call site] 02245
10 perror [call site] 02246
10 hts_md5_init [function] [call site] 02247
11 hts_md5_reset [function] [call site] 02248
10 hclose_abruptly [function] [call site] 02249
10 unlink [call site] 02250
10 hts_md5_update [function] [call site] 02251
11 body [function] [call site] 02252
11 body [function] [call site] 02253
10 hts_md5_final [function] [call site] 02254
11 body [function] [call site] 02255
11 body [function] [call site] 02256
10 hts_md5_destroy [function] [call site] 02257
10 hts_md5_hex [function] [call site] 02258
10 strncmp [call site] 02259
10 hts_log [function] [call site] 02260
10 hclose_abruptly [function] [call site] 02261
10 unlink [call site] 02262
10 hwrite [function] [call site] 02263
10 hclose [function] [call site] 02264
10 chmod [call site] 02265
10 rename [call site] 02266
10 __errno_location [call site] 02267
10 hts_log [function] [call site] 02268
10 unlink [call site] 02269
9 hts_log [function] [call site] 02270
9 pthread_mutex_unlock [call site] 02271
9 pthread_mutex_unlock [call site] 02272
9 cram_ref_incr_locked [function] [call site] 02273
9 cram_ref_incr_locked [function] [call site] 02274
9 cram_ref_load [function] [call site] 02275
10 __assert_fail [call site] 02276
10 __assert_fail [call site] 02277
10 ref_entry_free_seq [function] [call site] 02278
10 strcmp [call site] 02279
10 bgzf_close [function] [call site] 02280
10 bgzf_open_ref [function] [call site] 02281
10 load_ref_portion [function] [call site] 02282
11 bgzf_useek [function] [call site] 02283
12 hseek [function] [call site] 02284
12 bgzf_read_block [function] [call site] 02285
12 bgzf_seek_common [function] [call site] 02286
13 pthread_mutex_lock [call site] 02287
13 pthread_cond_signal [call site] 02288
13 hts_tpool_wake_dispatch [function] [call site] 02289
13 pthread_cond_wait [call site] 02290
13 pthread_cond_signal [call site] 02291
13 abort [call site] 02292
13 pthread_mutex_unlock [call site] 02293
13 hseek [function] [call site] 02294
12 bgzf_read_block [function] [call site] 02295
12 __assert_fail [call site] 02296
11 perror [call site] 02297
11 bgzf_read [function] [call site] 02298
11 perror [call site] 02299
11 isspace_c [function] [call site] 02300
11 isspace_c [function] [call site] 02301
11 isspace_c [function] [call site] 02302
11 hts_log [function] [call site] 02303
11 toupper_c [function] [call site] 02304
12 toupper [call site] 02305
9 pthread_mutex_unlock [call site] 02306
9 pthread_mutex_unlock [call site] 02307
9 cram_ref_incr_locked [function] [call site] 02308
9 pthread_mutex_unlock [call site] 02309
9 pthread_mutex_unlock [call site] 02310
9 pthread_mutex_unlock [call site] 02311
9 pthread_mutex_unlock [call site] 02312
9 strcmp [call site] 02313
9 bgzf_close [function] [call site] 02314
9 bgzf_open_ref [function] [call site] 02315
9 pthread_mutex_unlock [call site] 02316
9 pthread_mutex_unlock [call site] 02317
9 load_ref_portion [function] [call site] 02318
9 pthread_mutex_unlock [call site] 02319
9 pthread_mutex_unlock [call site] 02320
9 pthread_mutex_unlock [call site] 02321
9 pthread_mutex_unlock [call site] 02322
8 hts_log [function] [call site] 02323
8 hts_log [function] [call site] 02324
8 pthread_mutex_lock [call site] 02325
8 pthread_mutex_unlock [call site] 02326
8 hts_log [function] [call site] 02327
8 hts_log [function] [call site] 02328
8 hts_log [function] [call site] 02329
8 pthread_mutex_lock [call site] 02330
8 pthread_mutex_unlock [call site] 02331
8 validate_md5 [function] [call site] 02332
9 sam_hrecs_find_type_id [function] [call site] 02333
9 sam_hrecs_find_key [function] [call site] 02334
9 hts_md5_init [function] [call site] 02335
9 hts_md5_update [function] [call site] 02336
9 hts_md5_final [function] [call site] 02337
9 hts_md5_destroy [function] [call site] 02338
9 hts_md5_hex [function] [call site] 02339
9 hts_log [function] [call site] 02340
9 hts_log [function] [call site] 02341
8 cram_ref_incr [function] [call site] 02342
9 pthread_mutex_lock [call site] 02343
9 cram_ref_incr_locked [function] [call site] 02344
9 pthread_mutex_unlock [call site] 02345
8 cram_get_ref [function] [call site] 02346
8 validate_md5 [function] [call site] 02347
8 hts_log [function] [call site] 02348
8 __assert_fail [call site] 02349
8 lossy_read_names [function] [call site] 02350
9 kh_init_m_s2u64 [function] [call site] 02351
10 calloc [call site] 02352
9 expected_template_count [function] [call site] 02353
10 bam_aux_get [function] [call site] 02354
11 bam_aux_first [function] [call site] 02355
12 __errno_location [call site] 02356
11 skip_aux [function] [call site] 02357
12 aux_type2size [function] [call site] 02358
12 aux_type2size [function] [call site] 02359
12 le_to_u32 [function] [call site] 02360
11 hts_log [function] [call site] 02361
11 __errno_location [call site] 02362
10 bam_aux2i [function] [call site] 02363
11 get_int_aux_val [function] [call site] 02364
12 le_to_i8 [function] [call site] 02365
12 le_to_i16 [function] [call site] 02366
12 le_to_u16 [function] [call site] 02367
12 le_to_i32 [function] [call site] 02368
12 le_to_u32 [function] [call site] 02369
12 __errno_location [call site] 02370
10 bam_aux_get [function] [call site] 02371
9 kh_put_m_s2u64 [function] [call site] 02372
10 kh_resize_m_s2u64 [function] [call site] 02373
11 __ac_X31_hash_string [function] [call site] 02374
9 kh_get_m_s2u64 [function] [call site] 02375
9 kh_destroy_m_s2u64 [function] [call site] 02376
8 cram_generate_reference [function] [call site] 02377
9 extend_ref [function] [call site] 02378
10 realloc [call site] 02379
10 realloc [call site] 02380
9 hts_log [function] [call site] 02381
9 cram_add_to_ref [function] [call site] 02382
10 bam_aux_get [function] [call site] 02383
10 cram_add_to_ref_MD [function] [call site] 02384
11 __ctype_b_loc [call site] 02385
11 hts_str2uint [function] [call site] 02386
11 extend_ref [function] [call site] 02387
11 next_cigar_op [function] [call site] 02388
11 hts_log [function] [call site] 02389
11 extend_ref [function] [call site] 02390
11 next_cigar_op [function] [call site] 02391
11 hts_log [function] [call site] 02392
11 extend_ref [function] [call site] 02393
11 next_cigar_op [function] [call site] 02394
11 hts_log [function] [call site] 02395
10 extend_ref [function] [call site] 02396
8 hts_log [function] [call site] 02397
8 hts_log [function] [call site] 02398
8 pthread_mutex_unlock [call site] 02399
8 cram_ref_decr [function] [call site] 02400
9 pthread_mutex_lock [call site] 02401
9 cram_ref_decr_locked [function] [call site] 02402
10 __assert_fail [call site] 02403
10 ref_entry_free_seq [function] [call site] 02404
9 pthread_mutex_unlock [call site] 02405
8 cram_get_ref [function] [call site] 02406
8 validate_md5 [function] [call site] 02407
8 process_one_read [function] [call site] 02408
9 bam_aux_get [function] [call site] 02409
9 bam_aux_get [function] [call site] 02410
9 cram_stats_add [function] [call site] 02411
10 kh_init_m_i2i [function] [call site] 02412
11 calloc [call site] 02413
10 kh_put_m_i2i [function] [call site] 02414
9 cram_stats_add [function] [call site] 02415
9 cram_stats_add [function] [call site] 02416
9 block_grow [function] [call site] 02417
9 block_grow [function] [call site] 02418
9 nibble2base [function] [call site] 02419
9 realloc [call site] 02420
9 hts_log [function] [call site] 02421
9 kputuw [function] [call site] 02422
9 kputc [function] [call site] 02423
9 cram_add_substitution [function] [call site] 02424
10 cram_stats_add [function] [call site] 02425
10 cram_stats_add [function] [call site] 02426
10 cram_stats_add [function] [call site] 02427
10 block_append_char [function] [call site] 02428
11 block_grow [function] [call site] 02429
10 cram_add_feature [function] [call site] 02430
11 cram_stats_add [function] [call site] 02431
11 cram_stats_add [function] [call site] 02432
11 cram_stats_add [function] [call site] 02433
9 cram_add_bases [function] [call site] 02434
10 cram_add_feature [function] [call site] 02435
9 cram_add_base [function] [call site] 02436
10 cram_stats_add [function] [call site] 02437
10 cram_stats_add [function] [call site] 02438
10 block_append_char [function] [call site] 02439
10 cram_add_feature [function] [call site] 02440
9 cram_add_base [function] [call site] 02441
9 kputuw [function] [call site] 02442
9 kputc_ [function] [call site] 02443
9 kputsn [function] [call site] 02444
9 cram_add_deletion [function] [call site] 02445
10 cram_stats_add [function] [call site] 02446
10 cram_add_feature [function] [call site] 02447
9 cram_add_skip [function] [call site] 02448
10 cram_stats_add [function] [call site] 02449
10 cram_add_feature [function] [call site] 02450
9 cram_add_insertion [function] [call site] 02451
10 cram_stats_add [function] [call site] 02452
10 block_append [function] [call site] 02453
10 block_append_char [function] [call site] 02454
10 block_append_char [function] [call site] 02455
10 cram_add_feature [function] [call site] 02456
9 cram_add_quality [function] [call site] 02457
10 cram_stats_add [function] [call site] 02458
10 block_append_char [function] [call site] 02459
10 cram_add_feature [function] [call site] 02460
9 cram_add_softclip [function] [call site] 02461
10 block_append [function] [call site] 02462
10 block_append_char [function] [call site] 02463
10 block_append [function] [call site] 02464
10 block_append_char [function] [call site] 02465
10 block_append_char [function] [call site] 02466
10 cram_add_feature [function] [call site] 02467
9 cram_add_quality [function] [call site] 02468
9 cram_add_quality [function] [call site] 02469
9 cram_add_hardclip [function] [call site] 02470
10 cram_stats_add [function] [call site] 02471
10 cram_add_feature [function] [call site] 02472
9 cram_add_pad [function] [call site] 02473
10 cram_stats_add [function] [call site] 02474
10 cram_add_feature [function] [call site] 02475
9 hts_log [function] [call site] 02476
9 hts_log [function] [call site] 02477
9 cram_stats_add [function] [call site] 02478
9 kputuw [function] [call site] 02479
9 cram_stats_add [function] [call site] 02480
9 cram_encode_aux [function] [call site] 02481
10 sam_hrecs_find_rg [function] [call site] 02482
11 kh_get_m_s2i [function] [call site] 02483
10 block_append [function] [call site] 02484
10 hts_log [function] [call site] 02485
10 strncasecmp [call site] 02486
10 block_append [function] [call site] 02487
10 bam_aux2i [function] [call site] 02488
10 hts_log [function] [call site] 02489
10 block_append [function] [call site] 02490
10 block_append [function] [call site] 02491
10 kh_put_m_tagmap [function] [call site] 02492
11 kh_resize_m_tagmap [function] [call site] 02493
12 realloc [call site] 02494
10 pthread_mutex_lock [call site] 02495
10 kh_put_m_metrics [function] [call site] 02496
11 kh_resize_m_metrics [function] [call site] 02497
10 pthread_mutex_unlock [call site] 02498
10 cram_new_metrics [function] [call site] 02499
10 kh_del_m_metrics [function] [call site] 02500
10 pthread_mutex_unlock [call site] 02501
10 calloc [call site] 02502
10 cram_encoder_init [function] [call site] 02503
11 cram_encoding2str [function] [call site] 02504
11 hts_log [function] [call site] 02505
11 cram_encoding2str [function] [call site] 02506
11 hts_log [function] [call site] 02507
11 abort [call site] 02508
10 cram_stats_add [function] [call site] 02509
10 cram_stats_encoding [function] [call site] 02510
11 realloc [call site] 02511
11 realloc [call site] 02512
11 __assert_fail [call site] 02513
10 cram_encoder_init [function] [call site] 02514
10 cram_stats_add [function] [call site] 02515
10 cram_stats_encoding [function] [call site] 02516
10 cram_encoder_init [function] [call site] 02517
10 cram_stats_add [function] [call site] 02518
10 cram_stats_encoding [function] [call site] 02519
10 cram_encoder_init [function] [call site] 02520
10 cram_encoder_init [function] [call site] 02521
10 hts_log [function] [call site] 02522
10 pthread_mutex_lock [call site] 02523
10 pthread_mutex_unlock [call site] 02524
10 cram_new_block [function] [call site] 02525
10 block_append_char [function] [call site] 02526
10 cram_new_block [function] [call site] 02527
10 block_append [function] [call site] 02528
10 cram_new_block [function] [call site] 02529
10 block_append [function] [call site] 02530
10 cram_new_block [function] [call site] 02531
10 block_append [function] [call site] 02532
10 cram_new_block [function] [call site] 02533
10 cram_new_block [function] [call site] 02534
10 cram_new_block [function] [call site] 02535
10 hts_log [function] [call site] 02536
10 hts_log [function] [call site] 02537
10 block_append_char [function] [call site] 02538
10 string_ndup [function] [call site] 02539
10 kh_put_m_s2i [function] [call site] 02540
11 kh_resize_m_s2i [function] [call site] 02541
12 __ac_X31_hash_string [function] [call site] 02542
10 cram_stats_add [function] [call site] 02543
9 sam_hrecs_find_rg [function] [call site] 02544
9 cram_stats_add [function] [call site] 02545
9 block_grow [function] [call site] 02546
9 block_grow [function] [call site] 02547
9 cram_stats_add [function] [call site] 02548
9 string_ndup [function] [call site] 02549
9 kh_put_m_s2i [function] [call site] 02550
9 llabs [call site] 02551
9 cram_stats_add [function] [call site] 02552
9 cram_stats_del [function] [call site] 02553
10 kh_get_m_i2i [function] [call site] 02554
10 kh_del_m_i2i [function] [call site] 02555
10 hts_log [function] [call site] 02556
10 hts_log [function] [call site] 02557
9 cram_stats_del [function] [call site] 02558
9 cram_stats_del [function] [call site] 02559
9 cram_stats_del [function] [call site] 02560
9 cram_stats_add [function] [call site] 02561
9 cram_stats_del [function] [call site] 02562
9 cram_stats_add [function] [call site] 02563
9 cram_stats_add [function] [call site] 02564
9 cram_stats_add [function] [call site] 02565
9 cram_stats_add [function] [call site] 02566
9 cram_stats_add [function] [call site] 02567
9 cram_stats_add [function] [call site] 02568
9 cram_stats_add [function] [call site] 02569
9 cram_stats_add [function] [call site] 02570
8 add_read_names [function] [call site] 02571
9 block_append [function] [call site] 02572
9 block_append [function] [call site] 02573
9 cram_stats_add [function] [call site] 02574
8 calloc [call site] 02575
8 __assert_fail [call site] 02576
8 cram_ref_decr [function] [call site] 02577
8 pthread_mutex_lock [call site] 02578
8 pthread_mutex_unlock [call site] 02579
8 cram_stats_encoding [function] [call site] 02580
8 pthread_mutex_lock [call site] 02581
8 pthread_mutex_unlock [call site] 02582
8 hts_log [function] [call site] 02583
8 hts_md5_init [function] [call site] 02584
8 hts_md5_update [function] [call site] 02585
8 hts_md5_final [function] [call site] 02586
8 hts_md5_destroy [function] [call site] 02587
8 cram_stats_encoding [function] [call site] 02588
8 cram_encoder_init [function] [call site] 02589
8 cram_stats_encoding [function] [call site] 02590
8 cram_encoder_init [function] [call site] 02591
8 cram_stats_encoding [function] [call site] 02592
8 cram_encoder_init [function] [call site] 02593
8 cram_encoder_init [function] [call site] 02594
8 cram_encoder_init [function] [call site] 02595
8 cram_stats_encoding [function] [call site] 02596
8 cram_encoder_init [function] [call site] 02597
8 cram_stats_encoding [function] [call site] 02598
8 cram_encoder_init [function] [call site] 02599
8 cram_stats_encoding [function] [call site] 02600
8 cram_encoder_init [function] [call site] 02601
8 cram_stats_encoding [function] [call site] 02602
8 cram_encoder_init [function] [call site] 02603
8 cram_stats_encoding [function] [call site] 02604
8 cram_encoder_init [function] [call site] 02605
8 cram_stats_encoding [function] [call site] 02606
8 cram_encoder_init [function] [call site] 02607
8 cram_stats_encoding [function] [call site] 02608
8 cram_encoder_init [function] [call site] 02609
8 cram_stats_encoding [function] [call site] 02610
8 cram_encoder_init [function] [call site] 02611
8 cram_stats_encoding [function] [call site] 02612
8 cram_encoder_init [function] [call site] 02613
8 cram_stats_encoding [function] [call site] 02614
8 cram_encoder_init [function] [call site] 02615
8 cram_stats_encoding [function] [call site] 02616
8 cram_encoder_init [function] [call site] 02617
8 cram_stats_encoding [function] [call site] 02618
8 cram_encoder_init [function] [call site] 02619
8 cram_stats_encoding [function] [call site] 02620
8 cram_encoder_init [function] [call site] 02621
8 cram_encoder_init [function] [call site] 02622
8 cram_stats_encoding [function] [call site] 02623
8 cram_encoder_init [function] [call site] 02624
8 cram_stats_encoding [function] [call site] 02625
8 cram_encoder_init [function] [call site] 02626
8 cram_stats_encoding [function] [call site] 02627
8 cram_encoder_init [function] [call site] 02628
8 cram_stats_encoding [function] [call site] 02629
8 cram_encoder_init [function] [call site] 02630
8 cram_stats_encoding [function] [call site] 02631
8 cram_encoder_init [function] [call site] 02632
8 cram_stats_encoding [function] [call site] 02633
8 cram_encoder_init [function] [call site] 02634
8 cram_stats_encoding [function] [call site] 02635
8 cram_encoder_init [function] [call site] 02636
8 cram_stats_encoding [function] [call site] 02637
8 cram_encoder_init [function] [call site] 02638
8 cram_encoder_init [function] [call site] 02639
8 cram_encoder_init [function] [call site] 02640
8 cram_encoder_init [function] [call site] 02641
8 cram_encoder_init [function] [call site] 02642
8 hts_log [function] [call site] 02643
8 cram_encode_slice [function] [call site] 02644
9 calloc [call site] 02645
9 cram_new_block [function] [call site] 02646
9 cram_new_block [function] [call site] 02647
9 cram_new_block [function] [call site] 02648
9 block_append [function] [call site] 02649
9 cram_allocate_block [function] [call site] 02650
10 cram_new_block [function] [call site] 02651
10 cram_new_block [function] [call site] 02652
10 cram_allocate_block [function] [call site] 02653
11 cram_allocate_block [function] [call site] 02654
12 cram_allocate_block [function] [call site] 02655
13 cram_allocate_block [function] [call site] 02656
14 cram_allocate_block [function] [call site] 02657
15 cram_new_block [function] [call site] 02658
15 cram_allocate_block [function] [call site] 02659
16 cram_new_block [function] [call site] 02660
9 cram_encode_slice_read [function] [call site] 02661
10 hts_log [function] [call site] 02662
9 cram_free_block [function] [call site] 02663
9 cram_free_block [function] [call site] 02664
9 cram_free_block [function] [call site] 02665
9 cram_free_block [function] [call site] 02666
9 cram_compress_slice [function] [call site] 02667
10 cram_compress_block2 [function] [call site] 02668
11 pthread_mutex_lock [call site] 02669
11 pthread_mutex_unlock [call site] 02670
11 cram_compress_by_method [function] [call site] 02671
12 zlib_mem_deflate [function] [call site] 02672
13 deflateInit2_ [call site] 02673
13 hts_log [function] [call site] 02674
13 hts_log [function] [call site] 02675
13 deflate [call site] 02676
13 hts_log [function] [call site] 02677
13 deflate [call site] 02678
13 hts_log [function] [call site] 02679
13 deflateEnd [call site] 02680
13 hts_log [function] [call site] 02681
12 BZ2_bzBuffToBuffCompress [call site] 02682
12 fqz_compress [function] [call site] 02683
13 compress_block_fqz2f [function] [call site] 02684
14 fqz_pick_parameters [function] [call site] 02685
15 calloc [call site] 02686
15 fqz_qual_stats [function] [call site] 02687
16 memcmp [call site] 02688
16 fast_log [function] [call site] 02689
16 fast_log [function] [call site] 02690
16 fast_log [function] [call site] 02691
16 fast_log [function] [call site] 02692
16 fast_log [function] [call site] 02693
16 fast_log [function] [call site] 02694
16 fast_log [function] [call site] 02695
16 log [call site] 02696
16 log [call site] 02697
16 log [call site] 02698
16 log [call site] 02699
15 log [call site] 02700
14 var_put_u32 [function] [call site] 02701
15 var_put_u32_safe [function] [call site] 02702
14 fqz_store_parameters [function] [call site] 02703
15 store_array [function] [call site] 02704
15 fqz_store_parameters1 [function] [call site] 02705
16 store_array [function] [call site] 02706
16 store_array [function] [call site] 02707
16 store_array [function] [call site] 02708
14 fqz_create_models [function] [call site] 02709
14 RC_SetOutput [function] [call site] 02710
14 RC_StartEncode [function] [call site] 02711
14 compress_new_read [function] [call site] 02712
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02713
16 RC_Encode [function] [call site] 02714
17 RC_ShiftLow [function] [call site] 02715
16 SIMPLE_MODEL256_normalize [function] [call site] 02716
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02717
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02718
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02719
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02720
15 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02721
15 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02722
15 memcmp [call site] 02723
15 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02724
15 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02725
14 mm_prefetch [function] [call site] 02726
14 fqz_update_ctx [function] [call site] 02727
14 mm_prefetch [function] [call site] 02728
14 fqz_update_ctx [function] [call site] 02729
14 mm_prefetch [function] [call site] 02730
14 fqz_update_ctx [function] [call site] 02731
14 mm_prefetch [function] [call site] 02732
14 fqz_update_ctx [function] [call site] 02733
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02734
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02735
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02736
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02737
14 mm_prefetch [function] [call site] 02738
14 fqz_update_ctx [function] [call site] 02739
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02740
14 RC_FinishEncode [function] [call site] 02741
15 RC_ShiftLow [function] [call site] 02742
14 RC_OutSize [function] [call site] 02743
14 fqz_destroy_models [function] [call site] 02744
14 fqz_free_parameters [function] [call site] 02745
12 lzma_mem_deflate [function] [call site] 02746
13 lzma_stream_buffer_bound [call site] 02747
13 lzma_easy_buffer_encode [call site] 02748
12 rans_compress [function] [call site] 02749
13 rans_compress_O1 [function] [call site] 02750
14 rans_compress_O0 [function] [call site] 02751
15 hist8 [function] [call site] 02752
16 htscodecs_tls_calloc [function] [call site] 02753
16 htscodecs_tls_free [function] [call site] 02754
15 __assert_fail [call site] 02755
15 RansEncSymbolInit [function] [call site] 02756
16 __assert_fail [call site] 02757
16 __assert_fail [call site] 02758
15 RansEncInit [function] [call site] 02759
15 RansEncInit [function] [call site] 02760
15 RansEncInit [function] [call site] 02761
15 RansEncInit [function] [call site] 02762
15 RansEncPutSymbol [function] [call site] 02763
16 __assert_fail [call site] 02764
15 RansEncPutSymbol [function] [call site] 02765
15 RansEncPutSymbol [function] [call site] 02766
15 RansEncPutSymbol [function] [call site] 02767
15 RansEncPutSymbol [function] [call site] 02768
15 RansEncPutSymbol [function] [call site] 02769
15 RansEncPutSymbol [function] [call site] 02770
15 RansEncFlush [function] [call site] 02771
15 RansEncFlush [function] [call site] 02772
15 RansEncFlush [function] [call site] 02773
15 RansEncFlush [function] [call site] 02774
14 htscodecs_tls_alloc [function] [call site] 02775
14 hist1_4 [function] [call site] 02776
15 htscodecs_tls_calloc [function] [call site] 02777
15 htscodecs_tls_free [function] [call site] 02778
14 RansEncSymbolInit [function] [call site] 02779
14 __assert_fail [call site] 02780
14 RansEncInit [function] [call site] 02781
14 RansEncInit [function] [call site] 02782
14 RansEncInit [function] [call site] 02783
14 RansEncInit [function] [call site] 02784
14 RansEncPutSymbol [function] [call site] 02785
14 RansEncPutSymbol4 [function] [call site] 02786
15 __assert_fail [call site] 02787
15 __assert_fail [call site] 02788
14 RansEncPutSymbol [function] [call site] 02789
14 RansEncPutSymbol [function] [call site] 02790
14 RansEncPutSymbol [function] [call site] 02791
14 RansEncPutSymbol [function] [call site] 02792
14 RansEncFlush [function] [call site] 02793
14 RansEncFlush [function] [call site] 02794
14 RansEncFlush [function] [call site] 02795
14 RansEncFlush [function] [call site] 02796
14 htscodecs_tls_free [function] [call site] 02797
13 rans_compress_O0 [function] [call site] 02798
12 rans_compress_4x16 [function] [call site] 02799
13 rans_compress_to_4x16 [function] [call site] 02800
14 rans_compress_bound_4x16 [function] [call site] 02801
14 var_put_u32 [function] [call site] 02802
14 rans_compress_to_4x16 [function] [call site] 02803
15 realloc [call site] 02804
15 var_put_u32 [function] [call site] 02805
15 var_put_u32 [function] [call site] 02806
15 var_put_u32 [function] [call site] 02807
15 hts_pack [function] [call site] 02808
15 var_put_u32 [function] [call site] 02809
15 hts_rle_encode [function] [call site] 02810
16 rle_find_syms [function] [call site] 02811
16 var_put_u32 [function] [call site] 02812
15 var_put_u32 [function] [call site] 02813
15 var_put_u32 [function] [call site] 02814
15 rans_enc_func [function] [call site] 02815
16 pthread_once [call site] 02816
16 htscodecs_tls_cpu_init [function] [call site] 02817
16 strerror [call site] 02818
16 fprintf [call site] 02819
16 rans_compress_O1_32x16_avx512 [function] [call site] 02820
17 rans_compress_bound_4x16 [function] [call site] 02821
17 htscodecs_tls_alloc [function] [call site] 02822
17 encode_freq1 [function] [call site] 02823
18 htscodecs_tls_calloc [function] [call site] 02824
18 hist1_4 [function] [call site] 02825
18 encode_alphabet [function] [call site] 02826
18 rans_compute_shift [function] [call site] 02827
19 round2 [function] [call site] 02828
19 log [call site] 02829
19 fast_log [function] [call site] 02830
19 fast_log [function] [call site] 02831
18 normalise_freq [function] [call site] 02832
18 encode_freq_d [function] [call site] 02833
19 var_put_u32 [function] [call site] 02834
19 __assert_fail [call site] 02835
18 normalise_freq_shift [function] [call site] 02836
18 rans_compress_O0_4x16 [function] [call site] 02837
19 rans_compress_bound_4x16 [function] [call site] 02838
19 hist8 [function] [call site] 02839
19 round2 [function] [call site] 02840
19 normalise_freq [function] [call site] 02841
19 encode_freq [function] [call site] 02842
20 encode_alphabet [function] [call site] 02843
20 var_put_u32 [function] [call site] 02844
19 normalise_freq [function] [call site] 02845
19 RansEncSymbolInit [function] [call site] 02846
20 __assert_fail [call site] 02847
19 RansEncInit [function] [call site] 02848
19 RansEncInit [function] [call site] 02849
19 RansEncInit [function] [call site] 02850
19 RansEncInit [function] [call site] 02851
19 RansEncPutSymbol [function] [call site] 02852
19 RansEncPutSymbol [function] [call site] 02853
19 RansEncPutSymbol [function] [call site] 02854
19 RansEncPutSymbol [function] [call site] 02855
19 RansEncPutSymbol [function] [call site] 02856
19 RansEncPutSymbol [function] [call site] 02857
19 RansEncPutSymbol [function] [call site] 02858
19 RansEncFlush [function] [call site] 02859
19 RansEncFlush [function] [call site] 02860
19 RansEncFlush [function] [call site] 02861
19 RansEncFlush [function] [call site] 02862
18 var_put_u32 [function] [call site] 02863
18 var_put_u32 [function] [call site] 02864
18 __assert_fail [call site] 02865
18 htscodecs_tls_free [function] [call site] 02866
18 htscodecs_tls_free [function] [call site] 02867
17 htscodecs_tls_free [function] [call site] 02868
17 RansEncInit [function] [call site] 02869
17 RansEncPutSymbol [function] [call site] 02870
17 RansEncPutSymbol [function] [call site] 02871
17 RansEncFlush [function] [call site] 02872
17 htscodecs_tls_free [function] [call site] 02873
16 rans_compress_O1_32x16_avx2 [function] [call site] 02874
17 rans_compress_bound_4x16 [function] [call site] 02875
17 htscodecs_tls_alloc [function] [call site] 02876
17 encode_freq1 [function] [call site] 02877
17 htscodecs_tls_free [function] [call site] 02878
17 RansEncPutSymbol [function] [call site] 02879
17 _mm256_mulhi_epu32 [function] [call site] 02880
17 _mm256_mulhi_epu32 [function] [call site] 02881
17 _mm256_mulhi_epu32 [function] [call site] 02882
17 _mm256_mulhi_epu32 [function] [call site] 02883
17 RansEncPutSymbol [function] [call site] 02884
17 RansEncFlush [function] [call site] 02885
17 htscodecs_tls_free [function] [call site] 02886
16 rans_compress_O1_32x16 [function] [call site] 02887
17 rans_compress_bound_4x16 [function] [call site] 02888
17 htscodecs_tls_alloc [function] [call site] 02889
17 encode_freq1 [function] [call site] 02890
17 htscodecs_tls_free [function] [call site] 02891
17 RansEncInit [function] [call site] 02892
17 RansEncPutSymbol [function] [call site] 02893
17 RansEncPutSymbol [function] [call site] 02894
17 RansEncFlush [function] [call site] 02895
17 htscodecs_tls_free [function] [call site] 02896
16 rans_compress_O1_32x16 [function] [call site] 02897
16 rans_compress_O0_32x16_avx512 [function] [call site] 02898
17 rans_compress_bound_4x16 [function] [call site] 02899
17 hist8 [function] [call site] 02900
17 round2 [function] [call site] 02901
17 normalise_freq [function] [call site] 02902
17 encode_freq [function] [call site] 02903
17 normalise_freq [function] [call site] 02904
17 RansEncSymbolInit [function] [call site] 02905
17 RansEncInit [function] [call site] 02906
17 RansEncPutSymbol [function] [call site] 02907
17 RansEncFlush [function] [call site] 02908
16 rans_compress_O0_32x16_avx2 [function] [call site] 02909
17 rans_compress_bound_4x16 [function] [call site] 02910
17 hist8 [function] [call site] 02911
17 round2 [function] [call site] 02912
17 normalise_freq [function] [call site] 02913
17 encode_freq [function] [call site] 02914
17 normalise_freq [function] [call site] 02915
17 RansEncSymbolInit [function] [call site] 02916
17 RansEncInit [function] [call site] 02917
17 _mm256_mulhi_epu32 [function] [call site] 02918
17 _mm256_mulhi_epu32 [function] [call site] 02919
17 _mm256_mulhi_epu32 [function] [call site] 02920
17 _mm256_mulhi_epu32 [function] [call site] 02921
17 RansEncFlush [function] [call site] 02922
16 rans_compress_O0_32x16 [function] [call site] 02923
17 rans_compress_bound_4x16 [function] [call site] 02924
17 hist8e [function] [call site] 02925
17 encode_freq [function] [call site] 02926
17 normalise_freq [function] [call site] 02927
17 RansEncSymbolInit [function] [call site] 02928
17 RansEncInit [function] [call site] 02929
17 RansEncPutSymbol [function] [call site] 02930
17 RansEncPutSymbol_branched [function] [call site] 02931
17 RansEncPutSymbol_branched [function] [call site] 02932
17 RansEncPutSymbol_branched [function] [call site] 02933
17 RansEncPutSymbol_branched [function] [call site] 02934
17 RansEncPutSymbol_branched [function] [call site] 02935
17 RansEncPutSymbol_branched [function] [call site] 02936
17 RansEncPutSymbol_branched [function] [call site] 02937
17 RansEncPutSymbol_branched [function] [call site] 02938
17 abort [call site] 02939
17 RansEncFlush [function] [call site] 02940
16 rans_compress_O0_32x16 [function] [call site] 02941
15 var_put_u32 [function] [call site] 02942
15 var_put_u32 [function] [call site] 02943
15 var_put_u32 [function] [call site] 02944
15 rans_enc_func [function] [call site] 02945
12 arith_compress_to [function] [call site] 02946
13 arith_compress_bound [function] [call site] 02947
13 var_put_u32 [function] [call site] 02948
13 var_put_u32 [function] [call site] 02949
13 arith_compress_to [function] [call site] 02950
14 arith_compress_to [function] [call site] 02951
15 var_put_u32 [function] [call site] 02952
15 var_put_u32 [function] [call site] 02953
15 hts_pack [function] [call site] 02954
15 var_put_u32 [function] [call site] 02955
15 arith_compress_O0_RLE [function] [call site] 02956
16 arith_compress_bound [function] [call site] 02957
16 SIMPLE_MODEL256_init [function] [call site] 02958
16 htscodecs_tls_alloc [function] [call site] 02959
16 SIMPLE_MODEL258_init [function] [call site] 02960
16 RC_SetOutput [function] [call site] 02961
16 RC_StartEncode [function] [call site] 02962
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02963
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02964
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02965
16 RC_FinishEncode [function] [call site] 02966
16 RC_OutSize [function] [call site] 02967
15 arith_compress_O1_RLE [function] [call site] 02968
16 arith_compress_bound [function] [call site] 02969
16 htscodecs_tls_alloc [function] [call site] 02970
16 SIMPLE_MODEL256_init [function] [call site] 02971
16 htscodecs_tls_alloc [function] [call site] 02972
16 htscodecs_tls_free [function] [call site] 02973
16 SIMPLE_MODEL258_init [function] [call site] 02974
16 RC_SetOutput [function] [call site] 02975
16 RC_StartEncode [function] [call site] 02976
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02977
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02978
16 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02979
16 RC_FinishEncode [function] [call site] 02980
16 RC_OutSize [function] [call site] 02981
16 htscodecs_tls_free [function] [call site] 02982
16 htscodecs_tls_free [function] [call site] 02983
15 arith_compress_O1 [function] [call site] 02984
16 arith_compress_bound [function] [call site] 02985
16 htscodecs_tls_alloc [function] [call site] 02986
16 SIMPLE_MODEL256_init [function] [call site] 02987
16 RC_SetOutput [function] [call site] 02988
16 RC_StartEncode [function] [call site] 02989
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02990
16 RC_FinishEncode [function] [call site] 02991
16 RC_OutSize [function] [call site] 02992
16 htscodecs_tls_free [function] [call site] 02993
15 arith_compress_O0 [function] [call site] 02994
16 arith_compress_bound [function] [call site] 02995
16 SIMPLE_MODEL256_init [function] [call site] 02996
16 RC_SetOutput [function] [call site] 02997
16 RC_StartEncode [function] [call site] 02998
16 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02999
16 RC_FinishEncode [function] [call site] 03000
16 RC_OutSize [function] [call site] 03001
12 tok3_encode_names [function] [call site] 03002
13 create_context [function] [call site] 03003
13 build_trie [function] [call site] 03004
14 calloc [call site] 03005
14 pool_create [function] [call site] 03006
14 pool_alloc [function] [call site] 03007
15 new_pool [function] [call site] 03008
16 realloc [call site] 03009
13 free_context [function] [call site] 03010
13 encode_name [function] [call site] 03011
14 search_trie [function] [call site] 03012
15 calloc [call site] 03013
14 strlen [call site] 03014
14 encode_token_dup [function] [call site] 03015
15 encode_token_int [function] [call site] 03016
16 encode_token_type [function] [call site] 03017
17 descriptor_grow [function] [call site] 03018
18 realloc [call site] 03019
16 descriptor_grow [function] [call site] 03020
14 encode_token_diff [function] [call site] 03021
15 encode_token_int [function] [call site] 03022
14 memcmp [call site] 03023
14 encode_token_match [function] [call site] 03024
15 encode_token_type [function] [call site] 03025
14 encode_token_alpha [function] [call site] 03026
15 encode_token_type [function] [call site] 03027
15 descriptor_grow [function] [call site] 03028
14 encode_token_alpha [function] [call site] 03029
14 __ctype_b_loc [call site] 03030
14 memcmp [call site] 03031
14 encode_token_match [function] [call site] 03032
14 encode_token_alpha [function] [call site] 03033
14 encode_token_alpha [function] [call site] 03034
14 __ctype_b_loc [call site] 03035
14 encode_token_match [function] [call site] 03036
14 encode_token_int1 [function] [call site] 03037
15 encode_token_type [function] [call site] 03038
15 descriptor_grow [function] [call site] 03039
14 encode_token_int1_ [function] [call site] 03040
15 descriptor_grow [function] [call site] 03041
14 encode_token_int [function] [call site] 03042
14 encode_token_int1_ [function] [call site] 03043
14 encode_token_int [function] [call site] 03044
14 __ctype_b_loc [call site] 03045
14 __ctype_b_loc [call site] 03046
14 encode_token_match [function] [call site] 03047
14 encode_token_int1 [function] [call site] 03048
14 encode_token_int [function] [call site] 03049
14 encode_token_int [function] [call site] 03050
14 encode_token_match [function] [call site] 03051
14 encode_token_char [function] [call site] 03052
15 encode_token_type [function] [call site] 03053
15 descriptor_grow [function] [call site] 03054
14 encode_token_char [function] [call site] 03055
14 encode_token_end [function] [call site] 03056
15 encode_token_type [function] [call site] 03057
13 free_context [function] [call site] 03058
13 arith_compress_bound [function] [call site] 03059
13 free_context [function] [call site] 03060
13 compress [function] [call site] 03061
14 arith_encode [function] [call site] 03062
15 arith_compress_to [function] [call site] 03063
15 var_put_u32 [function] [call site] 03064
14 rans_encode [function] [call site] 03065
15 rans_compress_to_4x16 [function] [call site] 03066
15 var_put_u32 [function] [call site] 03067
13 free_context [function] [call site] 03068
13 memcmp [call site] 03069
13 free_context [function] [call site] 03070
13 free_context [function] [call site] 03071
11 pthread_mutex_lock [call site] 03072
11 pthread_mutex_unlock [call site] 03073
11 pthread_mutex_unlock [call site] 03074
11 cram_compress_by_method [function] [call site] 03075
11 cram_compress_by_method [function] [call site] 03076
11 hts_log [function] [call site] 03077
11 cram_block_method2str [function] [call site] 03078
11 hts_log [function] [call site] 03079
10 cram_compress_block2 [function] [call site] 03080
10 cram_compress_block2 [function] [call site] 03081
10 cram_compress_block2 [function] [call site] 03082
10 cram_compress_block2 [function] [call site] 03083
10 cram_compress_block2 [function] [call site] 03084
10 cram_compress_block2 [function] [call site] 03085
10 cram_compress_block2 [function] [call site] 03086
10 cram_compress_block2 [function] [call site] 03087
10 cram_compress_block2 [function] [call site] 03088
10 cram_compress_block2 [function] [call site] 03089
10 cram_compress_block2 [function] [call site] 03090
10 cram_compress_block2 [function] [call site] 03091
10 cram_compress_block2 [function] [call site] 03092
10 cram_compress_block2 [function] [call site] 03093
10 cram_compress_block2 [function] [call site] 03094
9 realloc [call site] 03095
9 cram_free_block [function] [call site] 03096
9 cram_encode_slice_header [function] [call site] 03097
10 cram_new_block [function] [call site] 03098
10 cram_free_block [function] [call site] 03099
10 __assert_fail [call site] 03100
8 cram_encode_compression_header [function] [call site] 03101
9 cram_new_block [function] [call site] 03102
9 cram_new_block [function] [call site] 03103
9 itf8_put_blk [function] [call site] 03104
9 itf8_put_blk [function] [call site] 03105
9 itf8_put_blk [function] [call site] 03106
9 itf8_put_blk [function] [call site] 03107
9 itf8_put_blk [function] [call site] 03108
9 itf8_put_blk [function] [call site] 03109
9 kh_destroy_map [function] [call site] 03110
9 kh_init_map [function] [call site] 03111
10 calloc [call site] 03112
9 kh_put_map [function] [call site] 03113
10 kh_resize_map [function] [call site] 03114
11 __ac_X31_hash_string [function] [call site] 03115
9 kh_put_map [function] [call site] 03116
9 kh_put_map [function] [call site] 03117
9 kh_put_map [function] [call site] 03118
9 kh_put_map [function] [call site] 03119
9 kh_put_map [function] [call site] 03120
9 kh_put_map [function] [call site] 03121
9 kh_put_map [function] [call site] 03122
9 kh_put_map [function] [call site] 03123
9 block_append [function] [call site] 03124
9 block_append_char [function] [call site] 03125
9 sub_idx [function] [call site] 03126
9 sub_idx [function] [call site] 03127
9 sub_idx [function] [call site] 03128
9 sub_idx [function] [call site] 03129
9 sub_idx [function] [call site] 03130
9 sub_idx [function] [call site] 03131
9 sub_idx [function] [call site] 03132
9 sub_idx [function] [call site] 03133
9 sub_idx [function] [call site] 03134
9 sub_idx [function] [call site] 03135
9 sub_idx [function] [call site] 03136
9 sub_idx [function] [call site] 03137
9 sub_idx [function] [call site] 03138
9 sub_idx [function] [call site] 03139
9 sub_idx [function] [call site] 03140
9 sub_idx [function] [call site] 03141
9 sub_idx [function] [call site] 03142
9 sub_idx [function] [call site] 03143
9 sub_idx [function] [call site] 03144
9 sub_idx [function] [call site] 03145
9 block_append [function] [call site] 03146
9 hts_log [function] [call site] 03147
9 block_append [function] [call site] 03148
9 block_append [function] [call site] 03149
9 block_append [function] [call site] 03150
9 hts_log [function] [call site] 03151
9 cram_free_block [function] [call site] 03152
8 cram_ref_decr [function] [call site] 03153
8 cram_ref_decr [function] [call site] 03154
7 cram_flush_container2 [function] [call site] 03155
8 htell [function] [call site] 03156
8 cram_write_container [function] [call site] 03157
9 itf8_put [function] [call site] 03158
9 crc32 [call site] 03159
9 hwrite [function] [call site] 03160
8 htell [function] [call site] 03161
8 cram_write_block [function] [call site] 03162
9 __assert_fail [call site] 03163
9 hputc [function] [call site] 03164
10 hputc2 [function] [call site] 03165
11 flush_buffer [function] [call site] 03166
9 hputc [function] [call site] 03167
9 hwrite [function] [call site] 03168
9 hwrite [function] [call site] 03169
9 hwrite [function] [call site] 03170
9 crc32 [call site] 03171
9 crc32 [call site] 03172
9 int32_encode [function] [call site] 03173
10 hwrite [function] [call site] 03174
8 htell [function] [call site] 03175
8 cram_write_block [function] [call site] 03176
8 cram_write_block [function] [call site] 03177
8 htell [function] [call site] 03178
8 cram_index_slice [function] [call site] 03179
9 hts_log [function] [call site] 03180
9 cram_index_build_multiref [function] [call site] 03181
10 cram_decode_slice [function] [call site] 03182
11 cram_dependent_data_series [function] [call site] 03183
12 cram_uncompress_block [function] [call site] 03184
12 cram_uncompress_block [function] [call site] 03185
12 cram_codec_to_id [function] [call site] 03186
13 cram_codec_to_id [function] [call site] 03187
14 cram_codec_to_id [function] [call site] 03188
15 hts_log [function] [call site] 03189
12 cram_uncompress_block [function] [call site] 03190
12 cram_codec_to_id [function] [call site] 03191
12 cram_uncompress_block [function] [call site] 03192
12 cram_codec_to_id [function] [call site] 03193
12 cram_codec_to_id [function] [call site] 03194
11 cram_decode_estimate_sizes [function] [call site] 03195
12 cram_codec_to_id [function] [call site] 03196
12 cram_ds_unique [function] [call site] 03197
13 cram_codec_to_id [function] [call site] 03198
12 cram_get_block_by_id [function] [call site] 03199
12 cram_codec_to_id [function] [call site] 03200
12 cram_ds_unique [function] [call site] 03201
12 cram_get_block_by_id [function] [call site] 03202
11 block_resize_exact [function] [call site] 03203
11 block_resize_exact [function] [call site] 03204
11 block_resize_exact [function] [call site] 03205
11 strcmp [call site] 03206
11 hts_log [function] [call site] 03207
11 cram_get_block_by_id [function] [call site] 03208
11 cram_uncompress_block [function] [call site] 03209
11 hts_log [function] [call site] 03210
11 cram_get_ref [function] [call site] 03211
11 hts_log [function] [call site] 03212
11 pthread_mutex_lock [call site] 03213
11 pthread_mutex_lock [call site] 03214
11 pthread_mutex_unlock [call site] 03215
11 pthread_mutex_unlock [call site] 03216
11 memcmp [call site] 03217
11 hts_log [function] [call site] 03218
11 hts_log [function] [call site] 03219
11 hts_md5_init [function] [call site] 03220
11 hts_md5_update [function] [call site] 03221
11 hts_md5_final [function] [call site] 03222
11 hts_md5_destroy [function] [call site] 03223
11 cram_get_block_by_id [function] [call site] 03224
11 hts_md5_init [function] [call site] 03225
11 hts_md5_update [function] [call site] 03226
11 hts_md5_final [function] [call site] 03227
11 hts_md5_destroy [function] [call site] 03228
11 memcmp [call site] 03229
11 sam_hdr_tid2name [function] [call site] 03230
11 hts_log [function] [call site] 03231
11 md5_print [function] [call site] 03232
11 hts_log [function] [call site] 03233
11 md5_print [function] [call site] 03234
11 hts_log [function] [call site] 03235
11 sam_hdr_find_tag_id [function] [call site] 03236
12 sam_hdr_fill_hrecs [function] [call site] 03237
12 sam_hrecs_find_type_id [function] [call site] 03238
12 sam_hrecs_find_key [function] [call site] 03239
12 kputsn [function] [call site] 03240
11 hts_log [function] [call site] 03241
11 hts_log [function] [call site] 03242
11 ks_free [function] [call site] 03243
11 pthread_mutex_lock [call site] 03244
11 pthread_mutex_lock [call site] 03245
11 pthread_mutex_unlock [call site] 03246
11 pthread_mutex_lock [call site] 03247
11 pthread_mutex_lock [call site] 03248
11 pthread_mutex_unlock [call site] 03249
11 pthread_mutex_lock [call site] 03250
11 pthread_mutex_unlock [call site] 03251
11 cram_ref_decr [function] [call site] 03252
11 pthread_mutex_lock [call site] 03253
11 pthread_mutex_unlock [call site] 03254
11 hts_log [function] [call site] 03255
11 hts_log [function] [call site] 03256
11 pthread_mutex_lock [call site] 03257
11 pthread_mutex_unlock [call site] 03258
11 cram_decode_tlen [function] [call site] 03259
11 cram_decode_tlen [function] [call site] 03260
11 cram_decode_tlen [function] [call site] 03261
11 cram_decode_aux_1_0 [function] [call site] 03262
12 map_find [function] [call site] 03263
12 block_append [function] [call site] 03264
11 cram_decode_aux [function] [call site] 03265
12 strlen [call site] 03266
12 sam_hdr_line_name [function] [call site] 03267
13 sam_hdr_fill_hrecs [function] [call site] 03268
13 hts_log [function] [call site] 03269
13 hts_log [function] [call site] 03270
13 hts_log [function] [call site] 03271
13 hts_log [function] [call site] 03272
12 block_append [function] [call site] 03273
12 block_append [function] [call site] 03274
12 block_append_char [function] [call site] 03275
12 block_append [function] [call site] 03276
12 map_find [function] [call site] 03277
12 block_append [function] [call site] 03278
12 hts_log [function] [call site] 03279
11 block_grow [function] [call site] 03280
11 block_grow [function] [call site] 03281
11 hts_log [function] [call site] 03282
11 cram_decode_seq [function] [call site] 03283
12 block_append [function] [call site] 03284
12 realloc [call site] 03285
12 hts_log [function] [call site] 03286
12 hts_log [function] [call site] 03287
12 memchr [call site] 03288
12 add_md_char [function] [call site] 03289
13 block_append_uint [function] [call site] 03290
14 block_grow [function] [call site] 03291
14 append_uint32 [function] [call site] 03292
13 block_append_char [function] [call site] 03293
12 block_append_uint [function] [call site] 03294
12 add_md_char [function] [call site] 03295
12 block_append_uint [function] [call site] 03296
12 block_append_char [function] [call site] 03297
12 block_append [function] [call site] 03298
12 block_append_char [function] [call site] 03299
12 block_append [function] [call site] 03300
12 block_append_uint [function] [call site] 03301
12 block_append_uint [function] [call site] 03302
12 block_append_uint [function] [call site] 03303
12 block_append_char [function] [call site] 03304
12 block_append_uint [function] [call site] 03305
12 block_append_char [function] [call site] 03306
12 hts_log [function] [call site] 03307
12 hts_log [function] [call site] 03308
12 memchr [call site] 03309
12 add_md_char [function] [call site] 03310
12 realloc [call site] 03311
12 block_append_uint [function] [call site] 03312
12 realloc [call site] 03313
12 block_append_char [function] [call site] 03314
12 block_append [function] [call site] 03315
12 hts_log [function] [call site] 03316
11 pthread_mutex_lock [call site] 03317
11 cram_ref_decr [function] [call site] 03318
11 cram_ref_decr [function] [call site] 03319
11 cram_decode_slice_xref [function] [call site] 03320
12 hts_log [function] [call site] 03321
11 cram_free_block [function] [call site] 03322
11 block_resize_exact [function] [call site] 03323
11 block_resize_exact [function] [call site] 03324
11 block_resize_exact [function] [call site] 03325
11 pthread_mutex_lock [call site] 03326
11 cram_ref_decr [function] [call site] 03327
11 pthread_mutex_unlock [call site] 03328
10 hts_log [function] [call site] 03329
10 bgzf_write [function] [call site] 03330
11 hwrite [function] [call site] 03331
11 __assert_fail [call site] 03332
11 lazy_flush [function] [call site] 03333
12 mt_queue [function] [call site] 03334
12 bgzf_flush [function] [call site] 03335
10 snprintf [call site] 03336
10 strlen [call site] 03337
10 bgzf_write [function] [call site] 03338
9 snprintf [call site] 03339
9 strlen [call site] 03340
9 bgzf_write [function] [call site] 03341
6 __errno_location [call site] 03342
6 hts_tpool_dispatch2 [function] [call site] 03343
7 hts_tpool_dispatch3 [function] [call site] 03344
6 cram_flush_thread [function] [call site] 03345
7 cram_encode_container [function] [call site] 03346
7 hts_log [function] [call site] 03347
6 __errno_location [call site] 03348
6 cram_flush_result [function] [call site] 03349
7 hts_tpool_next_result [function] [call site] 03350
8 hts_tpool_next_result_locked [function] [call site] 03351
7 hts_tpool_result_data [function] [call site] 03352
7 hts_tpool_delete_result [function] [call site] 03353
7 cram_flush_container2 [function] [call site] 03354
7 cram_free_slice [function] [call site] 03355
7 cram_free_slice [function] [call site] 03356
7 cram_free_container [function] [call site] 03357
7 hts_tpool_delete_result [function] [call site] 03358
7 cram_free_container [function] [call site] 03359
6 usleep [call site] 03360
5 cram_drain_rqueue [function] [call site] 03361
5 hts_tpool_process_flush [function] [call site] 03362
5 cram_flush_result [function] [call site] 03363
5 pthread_mutex_destroy [call site] 03364
5 pthread_mutex_destroy [call site] 03365
5 pthread_mutex_destroy [call site] 03366
5 hts_tpool_process_destroy [function] [call site] 03367
5 cram_write_eof_block [function] [call site] 03368
6 cram_encode_compression_header [function] [call site] 03369
6 cram_write_container [function] [call site] 03370
6 cram_write_block [function] [call site] 03371
6 cram_close [function] [call site] 03372
7 bam_destroy1 [function] [call site] 03373
8 bam_get_mempolicy [function] [call site] 03374
8 bam_get_mempolicy [function] [call site] 03375
8 bam_get_mempolicy [function] [call site] 03376
7 hclose [function] [call site] 03377
7 cram_free_file_def [function] [call site] 03378
7 sam_hdr_destroy [function] [call site] 03379
7 cram_free_container [function] [call site] 03380
7 cram_free_container [function] [call site] 03381
7 refs_free [function] [call site] 03382
7 kh_destroy_m_metrics [function] [call site] 03383
7 cram_index_free [function] [call site] 03384
8 cram_index_free_recurse [function] [call site] 03385
9 cram_index_free_recurse [function] [call site] 03386
7 hts_tpool_destroy [function] [call site] 03387
7 bgzf_close [function] [call site] 03388
6 cram_free_block [function] [call site] 03389
6 kh_destroy_map [function] [call site] 03390
6 cram_free_block [function] [call site] 03391
4 sam_state_destroy [function] [call site] 03392
4 fastq_state_destroy [function] [call site] 03393
5 kh_destroy_tag [function] [call site] 03394
5 ks_free [function] [call site] 03395
5 ks_free [function] [call site] 03396
5 ks_free [function] [call site] 03397
4 bgzf_close [function] [call site] 03398
4 hclose [function] [call site] 03399
4 __errno_location [call site] 03400
4 sam_hdr_destroy [function] [call site] 03401
4 hts_idx_destroy [function] [call site] 03402
5 cram_index_free [function] [call site] 03403
5 kh_destroy_bin [function] [call site] 03404
4 hts_filter_free [function] [call site] 03405
3 abort [call site] 03406
2 sam_hdr_count_lines [function] [call site] 03407
3 sam_hdr_fill_hrecs [function] [call site] 03408
3 sam_hrecs_find_type_id [function] [call site] 03409
2 sam_hdr_write [function] [call site] 03410
3 __errno_location [call site] 03411
3 bam_hdr_write [function] [call site] 03412
4 sam_hrecs_rebuild_text [function] [call site] 03413
4 hts_log [function] [call site] 03414
4 hts_log [function] [call site] 03415
4 hts_log [function] [call site] 03416
4 hts_log [function] [call site] 03417
4 hts_log [function] [call site] 03418
4 hts_log [function] [call site] 03419
4 bgzf_write [function] [call site] 03420
4 ed_swap_4 [function] [call site] 03421
4 bgzf_write [function] [call site] 03422
4 bgzf_write [function] [call site] 03423
4 ed_swap_4 [function] [call site] 03424
4 bgzf_write [function] [call site] 03425
4 bgzf_write [function] [call site] 03426
4 bgzf_write [function] [call site] 03427
4 bgzf_write [function] [call site] 03428
4 ed_swap_4 [function] [call site] 03429
4 bgzf_write [function] [call site] 03430
4 bgzf_write [function] [call site] 03431
4 bgzf_write [function] [call site] 03432
4 ed_swap_4 [function] [call site] 03433
4 bgzf_write [function] [call site] 03434
4 bgzf_write [function] [call site] 03435
4 bgzf_flush [function] [call site] 03436
3 cram_set_header2 [function] [call site] 03437
4 sam_hdr_destroy [function] [call site] 03438
4 sam_hdr_dup [function] [call site] 03439
4 refs_from_header [function] [call site] 03440
3 cram_load_reference [function] [call site] 03441
3 cram_write_SAM_hdr [function] [call site] 03442
4 cram_write_file_def [function] [call site] 03443
5 hwrite [function] [call site] 03444
4 sam_hrecs_find_rg [function] [call site] 03445
4 sam_hdr_add_line [function] [call site] 03446
5 sam_hdr_fill_hrecs [function] [call site] 03447
5 sam_hrecs_vadd [function] [call site] 03448
5 rebuild_target_arrays [function] [call site] 03449
5 redact_header_text [function] [call site] 03450
4 refs_from_header [function] [call site] 03451
4 refs2id [function] [call site] 03452
4 sam_hrecs_find_type_id [function] [call site] 03453
4 sam_hrecs_find_key [function] [call site] 03454
4 cram_get_ref [function] [call site] 03455
4 hts_log [function] [call site] 03456
4 hts_log [function] [call site] 03457
4 hts_log [function] [call site] 03458
4 pthread_mutex_lock [call site] 03459
4 pthread_mutex_unlock [call site] 03460
4 hts_md5_init [function] [call site] 03461
4 hts_md5_update [function] [call site] 03462
4 hts_md5_final [function] [call site] 03463
4 hts_md5_destroy [function] [call site] 03464
4 cram_ref_decr [function] [call site] 03465
4 hts_md5_hex [function] [call site] 03466
4 sam_hdr_update_line [function] [call site] 03467
5 sam_hdr_fill_hrecs [function] [call site] 03468
5 sam_hrecs_find_type_id [function] [call site] 03469
5 check_for_name_update [function] [call site] 03470
6 TYPEKEY [function] [call site] 03471
6 TYPEKEY [function] [call site] 03472
6 TYPEKEY [function] [call site] 03473
6 sam_hrecs_find_key [function] [call site] 03474
6 __assert_fail [call site] 03475
6 kh_get_m_s2i [function] [call site] 03476
5 hts_log [function] [call site] 03477
5 TYPEKEY [function] [call site] 03478
5 hts_log [function] [call site] 03479
5 sam_hrecs_vupdate [function] [call site] 03480
5 kh_get_m_s2i [function] [call site] 03481
5 sam_hrecs_find_key [function] [call site] 03482
5 __assert_fail [call site] 03483
5 __assert_fail [call site] 03484
5 __assert_fail [call site] 03485
5 kh_del_m_s2i [function] [call site] 03486
5 kh_put_m_s2i [function] [call site] 03487
5 hts_log [function] [call site] 03488
5 TYPEKEY [function] [call site] 03489
5 sam_hrecs_update_hashes [function] [call site] 03490
5 rebuild_target_arrays [function] [call site] 03491
5 redact_header_text [function] [call site] 03492
4 full_path [function] [call site] 03493
5 hisremote [function] [call site] 03494
5 hts_log [function] [call site] 03495
5 strncpy [call site] 03496
5 toupper_c [function] [call site] 03497
5 strncpy [call site] 03498
5 getcwd [call site] 03499
5 strlen [call site] 03500
5 strncpy [call site] 03501
5 snprintf [call site] 03502
4 sam_hdr_update_line [function] [call site] 03503
4 sam_hdr_length [function] [call site] 03504
5 sam_hdr_rebuild [function] [call site] 03505
6 rebuild_target_arrays [function] [call site] 03506
6 hts_log [function] [call site] 03507
6 sam_hdr_link_pg [function] [call site] 03508
7 sam_hdr_fill_hrecs [function] [call site] 03509
7 realloc [call site] 03510
7 calloc [call site] 03511
7 __assert_fail [call site] 03512
7 kh_get_m_s2i [function] [call site] 03513
7 hts_log [function] [call site] 03514
7 redact_header_text [function] [call site] 03515
6 sam_hrecs_rebuild_text [function] [call site] 03516
6 ks_free [function] [call site] 03517
6 hts_log [function] [call site] 03518
6 ks_len [function] [call site] 03519
6 ks_release [function] [call site] 03520
4 hts_log [function] [call site] 03521
4 int32_encode [function] [call site] 03522
4 sam_hdr_str [function] [call site] 03523
5 sam_hdr_rebuild [function] [call site] 03524
4 hwrite [function] [call site] 03525
4 cram_new_block [function] [call site] 03526
4 cram_new_container [function] [call site] 03527
5 calloc [call site] 03528
5 calloc [call site] 03529
5 cram_new_compression_header [function] [call site] 03530
6 calloc [call site] 03531
6 cram_new_block [function] [call site] 03532
6 kh_init_m_s2i [function] [call site] 03533
6 cram_free_block [function] [call site] 03534
6 string_pool_create [function] [call site] 03535
6 kh_destroy_m_s2i [function] [call site] 03536
6 cram_free_block [function] [call site] 03537
5 cram_stats_create [function] [call site] 03538
6 calloc [call site] 03539
5 kh_init_m_tagmap [function] [call site] 03540
4 cram_free_block [function] [call site] 03541
4 cram_free_container [function] [call site] 03542
4 int32_put_blk [function] [call site] 03543
5 block_append [function] [call site] 03544
4 sam_hdr_str [function] [call site] 03545
4 block_append [function] [call site] 03546
4 cram_compress_block [function] [call site] 03547
5 cram_compress_block2 [function] [call site] 03548
4 cram_free_block [function] [call site] 03549
4 cram_free_container [function] [call site] 03550
4 calloc [call site] 03551
4 cram_free_block [function] [call site] 03552
4 cram_free_container [function] [call site] 03553
4 block_append [function] [call site] 03554
4 cram_write_container [function] [call site] 03555
4 cram_free_block [function] [call site] 03556
4 cram_free_container [function] [call site] 03557
4 cram_write_block [function] [call site] 03558
4 cram_free_block [function] [call site] 03559
4 cram_free_container [function] [call site] 03560
4 block_resize [function] [call site] 03561
4 cram_write_block [function] [call site] 03562
4 cram_free_block [function] [call site] 03563
4 cram_free_container [function] [call site] 03564
4 cram_free_block [function] [call site] 03565
4 cram_free_container [function] [call site] 03566
4 hflush [function] [call site] 03567
3 sam_hrecs_rebuild_text [function] [call site] 03568
3 strstr [call site] 03569
3 bgzf_write [function] [call site] 03570
3 hwrite [function] [call site] 03571
3 kputsn [function] [call site] 03572
3 kputs [function] [call site] 03573
3 kputsn [function] [call site] 03574
3 kputw [function] [call site] 03575
3 kputc [function] [call site] 03576
3 bgzf_write [function] [call site] 03577
3 hwrite [function] [call site] 03578
3 bgzf_flush [function] [call site] 03579
3 hflush [function] [call site] 03580
3 __errno_location [call site] 03581
2 sam_hdr_destroy [function] [call site] 03582
2 hts_close_or_abort [function] [call site] 03583
2 bam_init1 [function] [call site] 03584
3 calloc [call site] 03585
2 sam_hdr_destroy [function] [call site] 03586
2 hts_close_or_abort [function] [call site] 03587
2 sam_read1 [function] [call site] 03588
3 sam_read1_bam [function] [call site] 03589
4 bam_read1 [function] [call site] 03590
5 bgzf_read [function] [call site] 03591
5 ed_swap_4p [function] [call site] 03592
5 bgzf_read [function] [call site] 03593
5 ed_swap_4p [function] [call site] 03594
5 realloc_bam_data [function] [call site] 03595
6 sam_realloc_bam_data [function] [call site] 03596
7 __errno_location [call site] 03597
7 bam_get_mempolicy [function] [call site] 03598
7 realloc [call site] 03599
7 bam_get_mempolicy [function] [call site] 03600
5 bgzf_read [function] [call site] 03601
5 fixup_missing_qname_nul [function] [call site] 03602
6 realloc_bam_data [function] [call site] 03603
5 bgzf_read [function] [call site] 03604
5 swap_data [function] [call site] 03605
6 ed_swap_4p [function] [call site] 03606
5 bam_tag2cigar [function] [call site] 03607
6 __errno_location [call site] 03608
6 bam_aux_get [function] [call site] 03609
6 __errno_location [call site] 03610
6 le_to_u32 [function] [call site] 03611
6 possibly_expand_bam_data [function] [call site] 03612
7 __errno_location [call site] 03613
7 sam_realloc_bam_data [function] [call site] 03614
6 bam_endpos [function] [call site] 03615
7 bam_cigar2rlen [function] [call site] 03616
6 hts_reg2bin [function] [call site] 03617
6 hts_log [function] [call site] 03618
5 bam_cigar2rqlens [function] [call site] 03619
5 hts_reg2bin [function] [call site] 03620
5 hts_log [function] [call site] 03621
4 __errno_location [call site] 03622
3 sam_read1_cram [function] [call site] 03623
4 cram_get_bam_seq [function] [call site] 03624
5 cram_get_seq [function] [call site] 03625
6 cram_next_slice [function] [call site] 03626
7 cram_first_slice [function] [call site] 03627
8 cram_free_container [function] [call site] 03628
8 cram_read_container [function] [call site] 03629
8 cram_seek [function] [call site] 03630
8 cram_free_container [function] [call site] 03631
8 cram_read_container [function] [call site] 03632
8 cram_read_block [function] [call site] 03633
8 cram_decode_compression_header [function] [call site] 03634
9 calloc [call site] 03635
9 cram_uncompress_block [function] [call site] 03636
9 kh_init_map [function] [call site] 03637
9 cram_free_compression_header [function] [call site] 03638
9 cram_free_compression_header [function] [call site] 03639
9 kh_put_map [function] [call site] 03640
9 cram_free_compression_header [function] [call site] 03641
9 kh_put_map [function] [call site] 03642
9 cram_free_compression_header [function] [call site] 03643
9 kh_put_map [function] [call site] 03644
9 cram_free_compression_header [function] [call site] 03645
9 kh_put_map [function] [call site] 03646
9 cram_free_compression_header [function] [call site] 03647
9 cram_free_compression_header [function] [call site] 03648
9 kh_put_map [function] [call site] 03649
9 cram_free_compression_header [function] [call site] 03650
9 cram_decode_TD [function] [call site] 03651
10 cram_new_block [function] [call site] 03652
10 hts_log [function] [call site] 03653
10 cram_free_block [function] [call site] 03654
10 cram_free_block [function] [call site] 03655
10 cram_free_block [function] [call site] 03656
10 block_append [function] [call site] 03657
10 block_append_char [function] [call site] 03658
10 calloc [call site] 03659
10 cram_free_block [function] [call site] 03660
10 cram_free_block [function] [call site] 03661
9 cram_free_compression_header [function] [call site] 03662
9 kh_put_map [function] [call site] 03663
9 cram_free_compression_header [function] [call site] 03664
9 cram_free_compression_header [function] [call site] 03665
9 cram_free_compression_header [function] [call site] 03666
9 cram_free_compression_header [function] [call site] 03667
9 hts_log [function] [call site] 03668
9 hts_log [function] [call site] 03669
9 cram_decoder_init [function] [call site] 03670
10 cram_encoding2str [function] [call site] 03671
10 hts_log [function] [call site] 03672
9 cram_free_compression_header [function] [call site] 03673
9 cram_free_compression_header [function] [call site] 03674
9 cram_free_compression_header [function] [call site] 03675
9 cram_free_compression_header [function] [call site] 03676
9 cram_decoder_init [function] [call site] 03677
9 cram_free_compression_header [function] [call site] 03678
9 cram_free_compression_header [function] [call site] 03679
8 sam_hrecs_sort_order [function] [call site] 03680
9 TYPEKEY [function] [call site] 03681
9 strcmp [call site] 03682
9 strcmp [call site] 03683
9 strcmp [call site] 03684
9 hts_log [function] [call site] 03685
8 pthread_mutex_lock [call site] 03686
8 pthread_mutex_unlock [call site] 03687
7 cram_free_slice [function] [call site] 03688
7 cram_free_container [function] [call site] 03689
7 cram_read_container [function] [call site] 03690
7 cram_free_container [function] [call site] 03691
7 cram_free_container [function] [call site] 03692
7 cram_free_container [function] [call site] 03693
7 cram_seek [function] [call site] 03694
7 cram_free_container [function] [call site] 03695
7 cram_read_block [function] [call site] 03696
7 cram_decode_compression_header [function] [call site] 03697
7 sam_hrecs_sort_order [function] [call site] 03698
7 pthread_mutex_lock [call site] 03699
7 pthread_mutex_unlock [call site] 03700
7 cram_free_container [function] [call site] 03701
7 cram_read_slice [function] [call site] 03702
8 cram_read_block [function] [call site] 03703
8 calloc [call site] 03704
8 cram_decode_slice_header [function] [call site] 03705
9 cram_uncompress_block [function] [call site] 03706
9 calloc [call site] 03707
9 hts_log [function] [call site] 03708
8 cram_content_type2str [function] [call site] 03709
8 hts_log [function] [call site] 03710
8 hts_log [function] [call site] 03711
8 calloc [call site] 03712
8 cram_read_block [function] [call site] 03713
8 calloc [call site] 03714
8 cram_new_block [function] [call site] 03715
8 cram_new_block [function] [call site] 03716
8 cram_new_block [function] [call site] 03717
8 cram_new_block [function] [call site] 03718
8 cram_new_block [function] [call site] 03719
8 cram_new_block [function] [call site] 03720
8 cram_free_block [function] [call site] 03721
8 cram_free_slice [function] [call site] 03722
7 cram_free_slice [function] [call site] 03723
7 cram_free_slice [function] [call site] 03724
7 cram_free_slice [function] [call site] 03725
7 cram_decode_slice_mt [function] [call site] 03726
8 cram_decode_slice [function] [call site] 03727
8 hts_tpool_process_sz [function] [call site] 03728
8 __errno_location [call site] 03729
8 __errno_location [call site] 03730
8 hts_tpool_dispatch2 [function] [call site] 03731
8 cram_decode_slice_thread [function] [call site] 03732
9 cram_decode_slice [function] [call site] 03733
8 __errno_location [call site] 03734
8 __errno_location [call site] 03735
7 hts_log [function] [call site] 03736
7 cram_free_slice [function] [call site] 03737
7 hts_tpool_process_len [function] [call site] 03738
7 hts_tpool_process_qsize [function] [call site] 03739
7 hts_tpool_process_empty [function] [call site] 03740
7 hts_tpool_next_result_wait [function] [call site] 03741
7 hts_tpool_result_data [function] [call site] 03742
7 hts_log [function] [call site] 03743
7 hts_tpool_result_data [function] [call site] 03744
7 hts_log [function] [call site] 03745
7 hts_tpool_delete_result [function] [call site] 03746
7 hts_tpool_delete_result [function] [call site] 03747
6 cram_free_slice [function] [call site] 03748
6 cram_free_slice [function] [call site] 03749
5 cram_to_bam [function] [call site] 03750
6 strlen [call site] 03751
6 append_uint64 [function] [call site] 03752
7 append_uint32 [function] [call site] 03753
7 append_uint32 [function] [call site] 03754
7 append_sub32 [function] [call site] 03755
7 append_uint32 [function] [call site] 03756
7 append_sub32 [function] [call site] 03757
6 append_uint64 [function] [call site] 03758
6 bam_set1 [function] [call site] 03759
7 bam_cigar2rqlens [function] [call site] 03760
7 hts_log [function] [call site] 03761
7 __errno_location [call site] 03762
7 hts_log [function] [call site] 03763
7 __errno_location [call site] 03764
7 __errno_location [call site] 03765
7 hts_log [function] [call site] 03766
7 __errno_location [call site] 03767
7 subtract_check_underflow [function] [call site] 03768
7 subtract_check_underflow [function] [call site] 03769
7 subtract_check_underflow [function] [call site] 03770
7 subtract_check_underflow [function] [call site] 03771
7 subtract_check_underflow [function] [call site] 03772
7 __errno_location [call site] 03773
7 realloc_bam_data [function] [call site] 03774
7 hts_reg2bin [function] [call site] 03775
7 strncpy [call site] 03776
4 cram_eof [function] [call site] 03777
4 bam_tag2cigar [function] [call site] 03778
3 sam_read1_sam [function] [call site] 03779
4 sam_parse1 [function] [call site] 03780
5 hts_log [function] [call site] 03781
5 hts_log [function] [call site] 03782
5 possibly_expand_bam_data [function] [call site] 03783
5 parse_sam_flag [function] [call site] 03784
6 hts_str2uint [function] [call site] 03785
6 strtoul [call site] 03786
5 strchr [call site] 03787
5 strcmp [call site] 03788
5 hts_log [function] [call site] 03789
5 bam_name2id [function] [call site] 03790
6 sam_hdr_name2tid [function] [call site] 03791
7 sam_hdr_fill_hrecs [function] [call site] 03792
7 kh_get_m_s2i [function] [call site] 03793
5 hts_log [function] [call site] 03794
5 hts_strprint [function] [call site] 03795
6 isprint_c [function] [call site] 03796
7 __ctype_b_loc [call site] 03797
5 hts_log [function] [call site] 03798
5 hts_str2uint [function] [call site] 03799
5 hts_log [function] [call site] 03800
5 hts_str2uint [function] [call site] 03801
5 bam_parse_cigar [function] [call site] 03802
6 hts_log [function] [call site] 03803
6 read_ncigar [function] [call site] 03804
7 isdigit_c [function] [call site] 03805
7 hts_log [function] [call site] 03806
7 hts_log [function] [call site] 03807
6 possibly_expand_bam_data [function] [call site] 03808
6 hts_log [function] [call site] 03809
6 parse_cigar [function] [call site] 03810
7 hts_str2uint [function] [call site] 03811
7 hts_log [function] [call site] 03812
7 hts_log [function] [call site] 03813
7 hts_log [function] [call site] 03814
5 bam_cigar2rlen [function] [call site] 03815
5 hts_log [function] [call site] 03816
5 strchr [call site] 03817
5 hts_log [function] [call site] 03818
5 hts_reg2bin [function] [call site] 03819
5 strcmp [call site] 03820
5 strcmp [call site] 03821
5 bam_name2id [function] [call site] 03822
5 hts_log [function] [call site] 03823
5 hts_strprint [function] [call site] 03824
5 hts_log [function] [call site] 03825
5 hts_str2uint [function] [call site] 03826
5 hts_log [function] [call site] 03827
5 hts_str2int [function] [call site] 03828
5 strchr [call site] 03829
5 strcmp [call site] 03830
5 hts_log [function] [call site] 03831
5 bam_cigar2qlen [function] [call site] 03832
5 hts_log [function] [call site] 03833
5 possibly_expand_bam_data [function] [call site] 03834
5 possibly_expand_bam_data [function] [call site] 03835
5 hts_log [function] [call site] 03836
5 hts_log [function] [call site] 03837
5 aux_parse [function] [call site] 03838
6 hts_log [function] [call site] 03839
6 isspace_c [function] [call site] 03840
6 hts_log [function] [call site] 03841
6 isspace_c [function] [call site] 03842
6 isspace_c [function] [call site] 03843
6 kh_get_tag [function] [call site] 03844
6 possibly_expand_bam_data [function] [call site] 03845
6 isspace_c [function] [call site] 03846
6 hts_log [function] [call site] 03847
6 possibly_expand_bam_data [function] [call site] 03848
6 hts_str2int [function] [call site] 03849
6 i16_to_le [function] [call site] 03850
7 u16_to_le [function] [call site] 03851
6 i32_to_le [function] [call site] 03852
7 u32_to_le [function] [call site] 03853
6 hts_str2uint [function] [call site] 03854
6 u16_to_le [function] [call site] 03855
6 u32_to_le [function] [call site] 03856
6 strtod [call site] 03857
6 float_to_le [function] [call site] 03858
7 u32_to_le [function] [call site] 03859
6 double_to_le [function] [call site] 03860
7 u64_to_le [function] [call site] 03861
6 strchr [call site] 03862
6 strlen [call site] 03863
6 isspace_c [function] [call site] 03864
6 hts_log [function] [call site] 03865
6 possibly_expand_bam_data [function] [call site] 03866
6 isspace_c [function] [call site] 03867
6 hts_log [function] [call site] 03868
6 sam_parse_B_vals [function] [call site] 03869
7 aux_type2size [function] [call site] 03870
7 possibly_expand_bam_data [function] [call site] 03871
7 hts_log [function] [call site] 03872
7 i32_to_le [function] [call site] 03873
7 hts_str2int [function] [call site] 03874
7 hts_str2uint [function] [call site] 03875
7 hts_str2int [function] [call site] 03876
7 i16_to_le [function] [call site] 03877
7 hts_str2uint [function] [call site] 03878
7 u16_to_le [function] [call site] 03879
7 hts_str2int [function] [call site] 03880
7 i32_to_le [function] [call site] 03881
7 hts_str2uint [function] [call site] 03882
7 u32_to_le [function] [call site] 03883
7 strtod [call site] 03884
7 float_to_le [function] [call site] 03885
7 hts_log [function] [call site] 03886
7 hts_str2int [function] [call site] 03887
7 sam_parse_B_vals [function] [call site] 03888
8 sam_parse_B_vals [function] [call site] 03889
9 sam_parse_B_vals [function] [call site] 03890
10 sam_parse_B_vals [function] [call site] 03891
11 sam_parse_B_vals [function] [call site] 03892
12 sam_parse_B_vals [function] [call site] 03893
13 hts_log [function] [call site] 03894
6 isspace_c [function] [call site] 03895
6 hts_strprint [function] [call site] 03896
6 hts_log [function] [call site] 03897
6 isspace_c [function] [call site] 03898
6 hts_log [function] [call site] 03899
5 bam_tag2cigar [function] [call site] 03900
4 sam_state_destroy [function] [call site] 03901
4 __errno_location [call site] 03902
4 bgzf_seek [function] [call site] 03903
5 bgzf_seek_common [function] [call site] 03904
4 sam_hdr_fill_hrecs [function] [call site] 03905
4 pthread_create [call site] 03906
4 sam_dispatcher_read [function] [call site] 03907
5 ks_resize [function] [call site] 03908
5 pthread_mutex_lock [call site] 03909
5 pthread_mutex_unlock [call site] 03910
5 hts_tpool_process_shutdown [function] [call site] 03911
5 pthread_mutex_unlock [call site] 03912
5 pthread_mutex_unlock [call site] 03913
5 calloc [call site] 03914
5 realloc [call site] 03915
5 bgzf_read [function] [call site] 03916
5 hread [function] [call site] 03917
5 __errno_location [call site] 03918
5 sam_state_err [function] [call site] 03919
5 realloc [call site] 03920
5 __assert_fail [call site] 03921
5 __assert_fail [call site] 03922
5 __assert_fail [call site] 03923
5 ks_resize [function] [call site] 03924
5 hts_tpool_dispatch3 [function] [call site] 03925
5 sam_parse_worker [function] [call site] 03926
6 pthread_mutex_lock [call site] 03927
6 pthread_mutex_unlock [call site] 03928
6 calloc [call site] 03929
6 calloc [call site] 03930
6 sam_state_err [function] [call site] 03931
6 sam_state_err [function] [call site] 03932
6 realloc [call site] 03933
6 sam_state_err [function] [call site] 03934
6 strchr [call site] 03935
6 sam_parse1 [function] [call site] 03936
6 __errno_location [call site] 03937
6 sam_state_err [function] [call site] 03938
6 cleanup_sp_lines [function] [call site] 03939
7 __assert_fail [call site] 03940
7 sam_free_sp_bams [function] [call site] 03941
6 pthread_mutex_lock [call site] 03942
6 pthread_mutex_unlock [call site] 03943
6 sam_free_sp_bams [function] [call site] 03944
5 pthread_mutex_lock [call site] 03945
5 pthread_mutex_unlock [call site] 03946
5 pthread_mutex_unlock [call site] 03947
5 hts_tpool_dispatch [function] [call site] 03948
5 sam_parse_eof [function] [call site] 03949
5 pthread_mutex_lock [call site] 03950
5 pthread_cond_wait [call site] 03951
5 pthread_cond_signal [call site] 03952
5 pthread_mutex_unlock [call site] 03953
5 hts_tpool_process_shutdown [function] [call site] 03954
5 pthread_mutex_unlock [call site] 03955
5 pthread_mutex_lock [call site] 03956
5 pthread_cond_signal [call site] 03957
5 pthread_mutex_unlock [call site] 03958
5 pthread_mutex_unlock [call site] 03959
5 __errno_location [call site] 03960
5 sam_state_err [function] [call site] 03961
5 hts_tpool_process_shutdown [function] [call site] 03962
4 hts_log [function] [call site] 03963
4 __errno_location [call site] 03964
4 hts_tpool_next_result_wait [function] [call site] 03965
4 hts_tpool_result_data [function] [call site] 03966
4 hts_tpool_delete_result [function] [call site] 03967
4 bam_copy1 [function] [call site] 03968
5 realloc_bam_data [function] [call site] 03969
4 pthread_mutex_lock [call site] 03970
4 pthread_mutex_unlock [call site] 03971
4 hts_getline [function] [call site] 03972
4 sam_parse1 [function] [call site] 03973
4 hts_log [function] [call site] 03974
3 fastq_state_init [function] [call site] 03975
3 fastq_parse1 [function] [call site] 03976
4 hts_getline [function] [call site] 03977
4 strpbrk [call site] 03978
4 isspace_c [function] [call site] 03979
4 isspace_c [function] [call site] 03980
4 hts_getline [function] [call site] 03981
4 kputsn [function] [call site] 03982
4 hts_getline [function] [call site] 03983
4 kputsn [function] [call site] 03984
4 isdigit_c [function] [call site] 03985
4 bam_set1 [function] [call site] 03986
4 isdigit_c [function] [call site] 03987
4 strtol [call site] 03988
4 isdigit_c [function] [call site] 03989
4 isspace_c [function] [call site] 03990
4 bam_aux_append [function] [call site] 03991
5 __assert_fail [call site] 03992
5 realloc_bam_data [function] [call site] 03993
5 __errno_location [call site] 03994
4 aux_parse [function] [call site] 03995
3 __errno_location [call site] 03996
3 __errno_location [call site] 03997
3 sam_passes_filter [function] [call site] 03998
4 hts_filter_eval2 [function] [call site] 03999
5 ks_free [function] [call site] 04000
5 hts_filter_eval_ [function] [call site] 04001
6 expression [function] [call site] 04002
7 and_expr [function] [call site] 04003
8 eq_expr [function] [call site] 04004
9 cmp_expr [function] [call site] 04005
10 bitor_expr [function] [call site] 04006
11 bitxor_expr [function] [call site] 04007
12 bitand_expr [function] [call site] 04008
13 add_expr [function] [call site] 04009
14 mul_expr [function] [call site] 04010
15 unary_expr [function] [call site] 04011
16 ws [function] [call site] 04012
16 simple_expr [function] [call site] 04013
17 ws [function] [call site] 04014
17 expression [function] [call site] 04015
17 ws [function] [call site] 04016
17 hts_str2dbl [function] [call site] 04017
18 __ctype_b_loc [call site] 04018
18 strtod [call site] 04019
17 ks_clear [function] [call site] 04020
17 func_expr [function] [call site] 04021
18 expression [function] [call site] 04022
18 expr_func_avg [function] [call site] 04023
18 expression [function] [call site] 04024
18 ws [function] [call site] 04025
18 hts_expr_val_existsT [function] [call site] 04026
19 hts_expr_val_exists [function] [call site] 04027
18 hts_expr_val_free [function] [call site] 04028
19 ks_free [function] [call site] 04029
18 strncmp [call site] 04030
18 expression [function] [call site] 04031
18 hts_expr_val_existsT [function] [call site] 04032
18 expression [function] [call site] 04033
18 exp [call site] 04034
18 hts_expr_val_undef [function] [call site] 04035
19 ks_clear [function] [call site] 04036
18 expression [function] [call site] 04037
18 expr_func_length [function] [call site] 04038
18 expression [function] [call site] 04039
18 log [call site] 04040
18 hts_expr_val_undef [function] [call site] 04041
18 strncmp [call site] 04042
18 expression [function] [call site] 04043
18 expr_func_min [function] [call site] 04044
18 strncmp [call site] 04045
18 expression [function] [call site] 04046
18 expr_func_max [function] [call site] 04047
18 strncmp [call site] 04048
18 expression [function] [call site] 04049
18 ws [function] [call site] 04050
18 hts_expr_val_exists [function] [call site] 04051
18 hts_expr_val_undef [function] [call site] 04052
18 hts_expr_val_free [function] [call site] 04053
18 hts_expr_val_free [function] [call site] 04054
18 hts_expr_val_undef [function] [call site] 04055
18 expression [function] [call site] 04056
18 sqrt [call site] 04057
18 hts_expr_val_undef [function] [call site] 04058
18 ws [function] [call site] 04059
16 hts_expr_val_exists [function] [call site] 04060
16 hts_expr_val_undef [function] [call site] 04061
16 unary_expr [function] [call site] 04062
17 hts_expr_val_exists [function] [call site] 04063
17 unary_expr [function] [call site] 04064
18 hts_expr_val_exists [function] [call site] 04065
18 hts_expr_val_undef [function] [call site] 04066
18 hts_expr_val_exists [function] [call site] 04067
18 hts_expr_val_undef [function] [call site] 04068
18 simple_expr [function] [call site] 04069
15 ws [function] [call site] 04070
15 unary_expr [function] [call site] 04071
15 hts_expr_val_exists [function] [call site] 04072
15 hts_expr_val_undef [function] [call site] 04073
15 hts_expr_val_free [function] [call site] 04074
15 hts_expr_val_undef [function] [call site] 04075
15 hts_expr_val_exists [function] [call site] 04076
15 hts_expr_val_free [function] [call site] 04077
14 ws [function] [call site] 04078
14 mul_expr [function] [call site] 04079
14 hts_expr_val_exists [function] [call site] 04080
14 hts_expr_val_free [function] [call site] 04081
14 hts_expr_val_undef [function] [call site] 04082
14 hts_expr_val_free [function] [call site] 04083
13 ws [function] [call site] 04084
13 add_expr [function] [call site] 04085
13 hts_expr_val_exists [function] [call site] 04086
13 hts_expr_val_free [function] [call site] 04087
13 hts_expr_val_free [function] [call site] 04088
13 hts_expr_val_undef [function] [call site] 04089
12 ws [function] [call site] 04090
12 bitand_expr [function] [call site] 04091
12 hts_expr_val_exists [function] [call site] 04092
12 hts_expr_val_free [function] [call site] 04093
12 hts_expr_val_free [function] [call site] 04094
12 hts_expr_val_undef [function] [call site] 04095
11 ws [function] [call site] 04096
11 bitxor_expr [function] [call site] 04097
11 hts_expr_val_exists [function] [call site] 04098
11 hts_expr_val_free [function] [call site] 04099
11 hts_expr_val_free [function] [call site] 04100
11 hts_expr_val_undef [function] [call site] 04101
10 ws [function] [call site] 04102
10 cmp_expr [function] [call site] 04103
11 hts_expr_val_exists [function] [call site] 04104
11 hts_expr_val_undef [function] [call site] 04105
11 cmp_expr [function] [call site] 04106
12 hts_expr_val_exists [function] [call site] 04107
12 hts_expr_val_undef [function] [call site] 04108
12 strcmp [call site] 04109
12 cmp_expr [function] [call site] 04110
13 hts_expr_val_exists [function] [call site] 04111
13 hts_expr_val_undef [function] [call site] 04112
13 cmp_expr [function] [call site] 04113
14 hts_expr_val_exists [function] [call site] 04114
14 hts_expr_val_undef [function] [call site] 04115
14 hts_expr_val_exists [function] [call site] 04116
14 hts_expr_val_undef [function] [call site] 04117
14 hts_expr_val_free [function] [call site] 04118
9 ws [function] [call site] 04119
9 eq_expr [function] [call site] 04120
10 hts_expr_val_exists [function] [call site] 04121
10 hts_expr_val_undef [function] [call site] 04122
10 strcmp [call site] 04123
10 eq_expr [function] [call site] 04124
11 hts_expr_val_exists [function] [call site] 04125
11 hts_expr_val_undef [function] [call site] 04126
11 strcmp [call site] 04127
11 eq_expr [function] [call site] 04128
12 hts_expr_val_free [function] [call site] 04129
12 fprintf [call site] 04130
12 hts_expr_val_free [function] [call site] 04131
12 hts_expr_val_exists [function] [call site] 04132
12 hts_expr_val_undef [function] [call site] 04133
12 hts_expr_val_free [function] [call site] 04134
8 ws [function] [call site] 04135
8 eq_expr [function] [call site] 04136
8 hts_expr_val_existsT [function] [call site] 04137
8 hts_expr_val_undef [function] [call site] 04138
8 eq_expr [function] [call site] 04139
8 hts_expr_val_existsT [function] [call site] 04140
8 hts_expr_val_undef [function] [call site] 04141
8 hts_expr_val_existsT [function] [call site] 04142
8 hts_expr_val_undef [function] [call site] 04143
8 hts_expr_val_existsT [function] [call site] 04144
8 hts_expr_val_undef [function] [call site] 04145
8 hts_expr_val_free [function] [call site] 04146
6 ws [function] [call site] 04147
6 hts_expr_val_exists [function] [call site] 04148
4 bam_sym_lookup [function] [call site] 04149
5 memcmp [call site] 04150
5 ks_clear [function] [call site] 04151
5 kputw [function] [call site] 04152
5 kputc_ [function] [call site] 04153
5 kputs [function] [call site] 04154
5 kputs [function] [call site] 04155
5 memcmp [call site] 04156
5 bam_endpos [function] [call site] 04157
5 memcmp [call site] 04158
5 memcmp [call site] 04159
5 memcmp [call site] 04160
5 memcmp [call site] 04161
5 memcmp [call site] 04162
5 memcmp [call site] 04163
5 memcmp [call site] 04164
5 memcmp [call site] 04165
5 memcmp [call site] 04166
5 memcmp [call site] 04167
5 hts_log [function] [call site] 04168
5 memcmp [call site] 04169
5 bam_get_library [function] [call site] 04170
6 bam_aux_get [function] [call site] 04171
5 ks_clear [function] [call site] 04172
5 memcmp [call site] 04173
5 memcmp [call site] 04174
5 memcmp [call site] 04175
5 sam_hdr_tid2name [function] [call site] 04176
5 ks_clear [function] [call site] 04177
5 memcmp [call site] 04178
5 memcmp [call site] 04179
5 memcmp [call site] 04180
5 bam_cigar2qlen [function] [call site] 04181
5 ks_clear [function] [call site] 04182
5 memcmp [call site] 04183
5 ks_clear [function] [call site] 04184
5 ks_resize [function] [call site] 04185
5 bam_cigar2rlen [function] [call site] 04186
5 memcmp [call site] 04187
5 sam_hdr_tid2name [function] [call site] 04188
5 ks_clear [function] [call site] 04189
5 memcmp [call site] 04190
5 sam_hdr_tid2name [function] [call site] 04191
5 ks_clear [function] [call site] 04192
5 memcmp [call site] 04193
5 ks_clear [function] [call site] 04194
5 ks_resize [function] [call site] 04195
5 nibble2base [function] [call site] 04196
5 memcmp [call site] 04197
5 bam_aux_get [function] [call site] 04198
5 ks_clear [function] [call site] 04199
5 ks_clear [function] [call site] 04200
5 bam_aux2i [function] [call site] 04201
5 bam_aux2f [function] [call site] 04202
6 le_to_double [function] [call site] 04203
6 le_to_float [function] [call site] 04204
6 get_int_aux_val [function] [call site] 04205
5 hts_log [function] [call site] 04206
4 hts_log [function] [call site] 04207
4 hts_expr_val_free [function] [call site] 04208
4 hts_expr_val_free [function] [call site] 04209
2 sam_write1 [function] [call site] 04210
3 bam_write_idx1 [function] [call site] 04211
4 bam_write1 [function] [call site] 04212
5 hts_log [function] [call site] 04213
5 hts_log [function] [call site] 04214
5 bgzf_flush_try [function] [call site] 04215
6 lazy_flush [function] [call site] 04216
5 ed_swap_4p [function] [call site] 04217
5 ed_swap_4p [function] [call site] 04218
5 bgzf_write [function] [call site] 04219
5 swap_data [function] [call site] 04220
5 bgzf_write [function] [call site] 04221
5 bgzf_write [function] [call site] 04222
5 bgzf_write [function] [call site] 04223
5 bgzf_write [function] [call site] 04224
5 bam_cigar2rlen [function] [call site] 04225
5 u32_to_le [function] [call site] 04226
5 u32_to_le [function] [call site] 04227
5 bgzf_write [function] [call site] 04228
5 bgzf_write [function] [call site] 04229
5 bgzf_write [function] [call site] 04230
5 u32_to_le [function] [call site] 04231
5 bgzf_write [function] [call site] 04232
5 bgzf_write [function] [call site] 04233
5 swap_data [function] [call site] 04234
4 bgzf_flush_try [function] [call site] 04235
4 hts_idx_amend_last [function] [call site] 04236
4 bgzf_idx_amend_last [function] [call site] 04237
4 bam_write1 [function] [call site] 04238
4 bam_endpos [function] [call site] 04239
4 bgzf_idx_push [function] [call site] 04240
5 hts_idx_push [function] [call site] 04241
6 realloc [call site] 04242
6 realloc [call site] 04243
6 hts_log [function] [call site] 04244
6 hts_log [function] [call site] 04245
6 hts_log [function] [call site] 04246
6 hts_log [function] [call site] 04247
6 kh_init_bin [function] [call site] 04248
7 calloc [call site] 04249
6 insert_to_l [function] [call site] 04250
7 realloc [call site] 04251
6 hts_reg2bin [function] [call site] 04252
6 insert_to_b [function] [call site] 04253
7 kh_put_bin [function] [call site] 04254
8 kh_resize_bin [function] [call site] 04255
7 kh_del_bin [function] [call site] 04256
7 realloc [call site] 04257
6 insert_to_b [function] [call site] 04258
6 insert_to_b [function] [call site] 04259
5 hts_idx_check_range [function] [call site] 04260
6 hts_log [function] [call site] 04261
6 __errno_location [call site] 04262
5 pthread_mutex_unlock [call site] 04263
5 pthread_mutex_unlock [call site] 04264
4 sam_hdr_tid2name [function] [call site] 04265
4 hts_log [function] [call site] 04266
3 cram_put_bam_seq [function] [call site] 04267
4 cram_new_container [function] [call site] 04268
4 pthread_mutex_lock [call site] 04269
4 pthread_mutex_unlock [call site] 04270
4 hts_log [function] [call site] 04271
4 pthread_mutex_lock [call site] 04272
4 hts_log [function] [call site] 04273
4 pthread_mutex_unlock [call site] 04274
4 cram_next_container [function] [call site] 04275
5 cram_update_curr_slice [function] [call site] 04276
5 hts_log [function] [call site] 04277
5 cram_flush_container_mt [function] [call site] 04278
5 cram_free_slice [function] [call site] 04279
5 cram_free_container [function] [call site] 04280
5 pthread_mutex_lock [call site] 04281
5 pthread_mutex_unlock [call site] 04282
5 cram_new_slice [function] [call site] 04283
6 calloc [call site] 04284
6 calloc [call site] 04285
6 cram_new_block [function] [call site] 04286
6 cram_new_block [function] [call site] 04287
6 cram_new_block [function] [call site] 04288
6 cram_new_block [function] [call site] 04289
6 cram_new_block [function] [call site] 04290
6 cram_new_block [function] [call site] 04291
6 string_pool_create [function] [call site] 04292
6 kh_init_m_s2i [function] [call site] 04293
6 kh_init_m_s2i [function] [call site] 04294
6 cram_free_slice [function] [call site] 04295
4 pthread_mutex_lock [call site] 04296
4 hts_log [function] [call site] 04297
4 pthread_mutex_unlock [call site] 04298
4 pthread_mutex_lock [call site] 04299
4 calloc [call site] 04300
4 pthread_mutex_unlock [call site] 04301
4 pthread_mutex_lock [call site] 04302
4 calloc [call site] 04303
4 pthread_mutex_unlock [call site] 04304
4 pthread_mutex_lock [call site] 04305
4 pthread_mutex_lock [call site] 04306
4 calloc [call site] 04307
4 pthread_mutex_unlock [call site] 04308
4 pthread_mutex_unlock [call site] 04309
4 bam_copy1 [function] [call site] 04310
4 bam_dup1 [function] [call site] 04311
5 bam_init1 [function] [call site] 04312
5 bam_copy1 [function] [call site] 04313
5 bam_destroy1 [function] [call site] 04314
3 pthread_create [call site] 04315
3 sam_dispatcher_write [function] [call site] 04316
4 hts_tpool_next_result_wait [function] [call site] 04317
4 hts_tpool_result_data [function] [call site] 04318
4 sam_state_err [function] [call site] 04319
4 bgzf_flush_try [function] [call site] 04320
4 bgzf_write [function] [call site] 04321
4 hwrite [function] [call site] 04322
4 bam_endpos [function] [call site] 04323
4 bgzf_idx_push [function] [call site] 04324
4 __errno_location [call site] 04325
4 sam_state_err [function] [call site] 04326
4 sam_hdr_tid2name [function] [call site] 04327
4 hts_log [function] [call site] 04328
4 bam_endpos [function] [call site] 04329
4 hts_idx_push [function] [call site] 04330
4 __errno_location [call site] 04331
4 sam_state_err [function] [call site] 04332
4 sam_hdr_tid2name [function] [call site] 04333
4 __assert_fail [call site] 04334
4 pthread_mutex_lock [call site] 04335
4 pthread_mutex_unlock [call site] 04336
4 bgzf_write [function] [call site] 04337
4 bgzf_flush_try [function] [call site] 04338
4 bgzf_write [function] [call site] 04339
4 hwrite [function] [call site] 04340
4 hts_tpool_delete_result [function] [call site] 04341
4 pthread_mutex_lock [call site] 04342
4 pthread_mutex_unlock [call site] 04343
4 sam_state_err [function] [call site] 04344
4 hts_tpool_process_shutdown [function] [call site] 04345
4 __errno_location [call site] 04346
4 sam_state_err [function] [call site] 04347
3 hts_log [function] [call site] 04348
3 pthread_mutex_lock [call site] 04349
3 pthread_mutex_unlock [call site] 04350
3 pthread_mutex_unlock [call site] 04351
3 calloc [call site] 04352
3 calloc [call site] 04353
3 bam_copy1 [function] [call site] 04354
3 pthread_mutex_lock [call site] 04355
3 pthread_mutex_unlock [call site] 04356
3 hts_tpool_dispatch3 [function] [call site] 04357
3 sam_format_worker [function] [call site] 04358
3 pthread_mutex_unlock [call site] 04359
3 pthread_mutex_unlock [call site] 04360
3 sam_format1 [function] [call site] 04361
4 sam_format1_append [function] [call site] 04362
3 kputc [function] [call site] 04363
3 bgzf_flush_try [function] [call site] 04364
3 bgzf_write [function] [call site] 04365
3 hwrite [function] [call site] 04366
3 bam_endpos [function] [call site] 04367
3 bgzf_idx_push [function] [call site] 04368
3 sam_hdr_tid2name [function] [call site] 04369
3 hts_log [function] [call site] 04370
3 bam_endpos [function] [call site] 04371
3 hts_idx_push [function] [call site] 04372
3 sam_hdr_tid2name [function] [call site] 04373
3 hts_log [function] [call site] 04374
3 fastq_state_init [function] [call site] 04375
3 fastq_format1 [function] [call site] 04376
4 kputc [function] [call site] 04377
4 kputs [function] [call site] 04378
4 kputs [function] [call site] 04379
4 bam_aux_get [function] [call site] 04380
4 ksprintf [function] [call site] 04381
4 isupper_c [function] [call site] 04382
4 hts_log [function] [call site] 04383
4 strlen [call site] 04384
4 strlen [call site] 04385
4 isalpha_c [function] [call site] 04386
4 islower_c [function] [call site] 04387
5 __ctype_b_loc [call site] 04388
4 toupper_c [function] [call site] 04389
4 kh_get_tag [function] [call site] 04390
4 kputc_ [function] [call site] 04391
4 sam_format_aux1 [function] [call site] 04392
4 skip_aux [function] [call site] 04393
4 kputsn [function] [call site] 04394
4 ks_resize [function] [call site] 04395
4 kputc_ [function] [call site] 04396
4 kputc_ [function] [call site] 04397
4 kputc_ [function] [call site] 04398
4 kputsn [function] [call site] 04399
4 kputc_ [function] [call site] 04400
4 kputc_ [function] [call site] 04401
4 kputc_ [function] [call site] 04402
4 kputc [function] [call site] 04403
3 bgzf_flush_try [function] [call site] 04404
3 bgzf_write [function] [call site] 04405
3 hwrite [function] [call site] 04406
2 bam_destroy1 [function] [call site] 04407
2 sam_hdr_destroy [function] [call site] 04408
2 hts_close_or_abort [function] [call site] 04409
1 view_vcf [function] [call site] 04410
2 hts_open [function] [call site] 04411
2 bcf_hdr_read [function] [call site] 04412
3 vcf_hdr_read [function] [call site] 04413
4 bcf_hdr_init [function] [call site] 04414
5 calloc [call site] 04415
5 kh_init_vdict [function] [call site] 04416
6 calloc [call site] 04417
5 calloc [call site] 04418
5 kh_init_hdict [function] [call site] 04419
5 strchr [call site] 04420
5 bcf_hdr_append [function] [call site] 04421
6 bcf_hdr_parse_line [function] [call site] 04422
7 isalpha_c [function] [call site] 04423
7 isalnum_c [function] [call site] 04424
7 bcf_hrec_add_key [function] [call site] 04425
8 realloc [call site] 04426
7 is_escaped [function] [call site] 04427
7 hts_strprint [function] [call site] 04428
7 hts_log [function] [call site] 04429
7 bcf_hrec_set_val [function] [call site] 04430
8 __errno_location [call site] 04431
7 hts_log [function] [call site] 04432
7 isspace_c [function] [call site] 04433
7 hts_strprint [function] [call site] 04434
7 hts_log [function] [call site] 04435
7 bcf_hrec_destroy [function] [call site] 04436
7 hts_strprint [function] [call site] 04437
7 hts_log [function] [call site] 04438
7 bcf_hrec_destroy [function] [call site] 04439
6 bcf_hdr_add_hrec [function] [call site] 04440
7 get_hdr_aux [function] [call site] 04441
7 bcf_hrec_check [function] [call site] 04442
8 bcf_hrec_set_type [function] [call site] 04443
9 strcmp [call site] 04444
8 bcf_hrec_find_key [function] [call site] 04445
8 bcf_hrec_find_key [function] [call site] 04446
8 strcmp [call site] 04447
8 bcf_hrec_find_key [function] [call site] 04448
8 hts_log [function] [call site] 04449
8 hts_log [function] [call site] 04450
7 bcf_hdr_register_hrec [function] [call site] 04451
8 bcf_hrec_set_type [function] [call site] 04452
8 bcf_hrec_find_key [function] [call site] 04453
8 bcf_hrec_find_key [function] [call site] 04454
8 strdup [call site] 04455
8 kh_get_vdict [function] [call site] 04456
9 __ac_X31_hash_string [function] [call site] 04457
8 kh_put_vdict [function] [call site] 04458
9 kh_resize_vdict [function] [call site] 04459
8 bcf_hrec_find_key [function] [call site] 04460
8 strtol [call site] 04461
8 kh_del_vdict [function] [call site] 04462
8 hts_log [function] [call site] 04463
8 bcf_hdr_set_idx [function] [call site] 04464
9 hts_log [function] [call site] 04465
8 kh_del_vdict [function] [call site] 04466
8 hrec_add_idx [function] [call site] 04467
9 realloc [call site] 04468
9 strdup [call site] 04469
8 strcmp [call site] 04470
8 strcmp [call site] 04471
8 hts_log [function] [call site] 04472
8 strcmp [call site] 04473
8 strcmp [call site] 04474
8 hts_log [function] [call site] 04475
8 strcmp [call site] 04476
8 strcmp [call site] 04477
8 strcmp [call site] 04478
8 strcmp [call site] 04479
8 strcmp [call site] 04480
8 __isoc99_sscanf [call site] 04481
8 hts_log [function] [call site] 04482
8 hts_log [function] [call site] 04483
8 hts_log [function] [call site] 04484
8 kh_get_vdict [function] [call site] 04485
8 hrec_add_idx [function] [call site] 04486
8 kh_put_vdict [function] [call site] 04487
8 bcf_hdr_set_idx [function] [call site] 04488
8 kh_del_vdict [function] [call site] 04489
8 hrec_add_idx [function] [call site] 04490
7 bcf_hrec_destroy [function] [call site] 04491
7 ksprintf [function] [call site] 04492
7 kh_get_hdict [function] [call site] 04493
8 __ac_X31_hash_string [function] [call site] 04494
7 bcf_hrec_destroy [function] [call site] 04495
7 bcf_hrec_find_key [function] [call site] 04496
7 ksprintf [function] [call site] 04497
7 kh_get_hdict [function] [call site] 04498
7 bcf_hrec_destroy [function] [call site] 04499
7 kh_put_hdict [function] [call site] 04500
8 kh_resize_hdict [function] [call site] 04501
7 bcf_hrec_destroy [function] [call site] 04502
5 bcf_hdr_append [function] [call site] 04503
5 kh_destroy_vdict [function] [call site] 04504
4 hts_log [function] [call site] 04505
4 hts_getline [function] [call site] 04506
4 hopen [function] [call site] 04507
4 kgetline [function] [call site] 04508
4 hgets [function] [call site] 04509
4 strchr [call site] 04510
4 kputs [function] [call site] 04511
4 kputsn [function] [call site] 04512
4 kputs [function] [call site] 04513
4 atol [call site] 04514
4 kputl [function] [call site] 04515
5 kputll [function] [call site] 04516
4 kputsn [function] [call site] 04517
4 hclose [function] [call site] 04518
4 hts_log [function] [call site] 04519
4 kputsn [function] [call site] 04520
4 kputc [function] [call site] 04521
4 hts_log [function] [call site] 04522
4 bcf_hdr_parse [function] [call site] 04523
5 bcf_hdr_parse_line [function] [call site] 04524
5 hts_log [function] [call site] 04525
5 bcf_hdr_add_hrec [function] [call site] 04526
5 bcf_hrec_destroy [function] [call site] 04527
5 bcf_hdr_parse_line [function] [call site] 04528
5 bcf_hdr_add_hrec [function] [call site] 04529
5 bcf_hrec_destroy [function] [call site] 04530
5 bcf_hdr_parse_line [function] [call site] 04531
5 bcf_hdr_add_hrec [function] [call site] 04532
5 bcf_hrec_destroy [function] [call site] 04533
5 hts_log [function] [call site] 04534
5 strncmp [call site] 04535
5 hts_strprint [function] [call site] 04536
5 hts_log [function] [call site] 04537
5 hts_log [function] [call site] 04538
5 bcf_hdr_parse_sample_line [function] [call site] 04539
6 hts_log [function] [call site] 04540
6 hts_log [function] [call site] 04541
6 bcf_hdr_add_sample_len [function] [call site] 04542
7 isspace_c [function] [call site] 04543
7 hts_log [function] [call site] 04544
7 kh_put_vdict [function] [call site] 04545
7 hts_log [function] [call site] 04546
5 bcf_hdr_sync [function] [call site] 04547
5 bcf_hdr_check_sanity [function] [call site] 04548
6 bcf_hdr_id2int [function] [call site] 04549
7 kh_get_vdict [function] [call site] 04550
6 hts_log [function] [call site] 04551
6 bcf_hdr_id2int [function] [call site] 04552
6 hts_log [function] [call site] 04553
4 tbx_index_load3 [function] [call site] 04554
5 index_load [function] [call site] 04555
6 calloc [call site] 04556
6 hts_idx_load3 [function] [call site] 04557
7 idx_find_and_load [function] [call site] 04558
8 strstr [call site] 04559
8 strdup [call site] 04560
8 __errno_location [call site] 04561
8 hts_log [function] [call site] 04562
8 hts_idx_load3 [function] [call site] 04563
9 hisremote [function] [call site] 04564
9 stat [call site] 04565
9 hts_log [function] [call site] 04566
9 idx_test_and_fetch [function] [call site] 04567
10 hisremote [function] [call site] 04568
10 strncmp [call site] 04569
10 kputsn [function] [call site] 04570
10 access [call site] 04571
10 hopen [function] [call site] 04572
10 hts_log [function] [call site] 04573
10 hts_detect_format2 [function] [call site] 04574
10 hts_log [function] [call site] 04575
10 hts_open_tmpfile [function] [call site] 04576
10 hts_log [function] [call site] 04577
10 hts_log [function] [call site] 04578
10 calloc [call site] 04579
10 hts_log [function] [call site] 04580
10 hread [function] [call site] 04581
10 hwrite [function] [call site] 04582
10 __errno_location [call site] 04583
10 hts_log [function] [call site] 04584
10 hts_log [function] [call site] 04585
10 hclose [function] [call site] 04586
10 __errno_location [call site] 04587
10 hts_log [function] [call site] 04588
10 rename [call site] 04589
10 hts_log [function] [call site] 04590
10 ks_clear [function] [call site] 04591
10 hclose [function] [call site] 04592
10 hts_log [function] [call site] 04593
10 hopen [function] [call site] 04594
10 hclose_abruptly [function] [call site] 04595
10 strlen [call site] 04596
10 __errno_location [call site] 04597
10 hclose_abruptly [function] [call site] 04598
10 hclose_abruptly [function] [call site] 04599
10 unlink [call site] 04600
10 __errno_location [call site] 04601
9 strdup [call site] 04602
9 idx_read [function] [call site] 04603
10 bgzf_open [function] [call site] 04604
10 ed_is_big [function] [call site] 04605
10 bgzf_read [function] [call site] 04606
10 memcmp [call site] 04607
10 bgzf_read [function] [call site] 04608
10 ed_swap_4p [function] [call site] 04609
10 bgzf_read [function] [call site] 04610
10 bgzf_read [function] [call site] 04611
10 ed_swap_4p [function] [call site] 04612
10 hts_idx_init [function] [call site] 04613
11 calloc [call site] 04614
10 idx_read_core [function] [call site] 04615
11 ed_is_big [function] [call site] 04616
11 kh_init_bin [function] [call site] 04617
11 bgzf_read [function] [call site] 04618
11 ed_swap_4p [function] [call site] 04619
11 bgzf_read [function] [call site] 04620
11 ed_swap_4p [function] [call site] 04621
11 kh_put_bin [function] [call site] 04622
11 bgzf_read [function] [call site] 04623
11 ed_swap_8p [function] [call site] 04624
12 ed_swap_8 [function] [call site] 04625
11 bgzf_read [function] [call site] 04626
11 ed_swap_4p [function] [call site] 04627
11 bgzf_read [function] [call site] 04628
11 swap_bins [function] [call site] 04629
12 ed_swap_8p [function] [call site] 04630
12 ed_swap_8p [function] [call site] 04631
11 bgzf_read [function] [call site] 04632
11 ed_swap_4p [function] [call site] 04633
11 bgzf_read [function] [call site] 04634
11 ed_swap_8p [function] [call site] 04635
11 update_loff [function] [call site] 04636
12 hts_bin_bot [function] [call site] 04637
13 hts_bin_level [function] [call site] 04638
11 bgzf_read [function] [call site] 04639
11 ed_swap_8p [function] [call site] 04640
10 memcmp [call site] 04641
10 bgzf_read [function] [call site] 04642
10 le_to_u32 [function] [call site] 04643
10 hts_idx_init [function] [call site] 04644
10 le_to_u32 [function] [call site] 04645
10 bgzf_read [function] [call site] 04646
10 idx_read_core [function] [call site] 04647
10 memcmp [call site] 04648
10 bgzf_read [function] [call site] 04649
10 ed_swap_4p [function] [call site] 04650
10 hts_idx_init [function] [call site] 04651
10 idx_read_core [function] [call site] 04652
10 __errno_location [call site] 04653
10 bgzf_close [function] [call site] 04654
10 bgzf_close [function] [call site] 04655
10 hts_idx_destroy [function] [call site] 04656
9 __errno_location [call site] 04657
9 hts_log [function] [call site] 04658
8 hts_idx_check_local [function] [call site] 04659
9 hisremote [function] [call site] 04660
9 strlen [call site] 04661
9 strncmp [call site] 04662
9 strncmp [call site] 04663
9 hts_log [function] [call site] 04664
9 strlen [call site] 04665
9 calloc [call site] 04666
9 strcpy [call site] 04667
9 stat [call site] 04668
9 strcpy [call site] 04669
9 stat [call site] 04670
9 strcpy [call site] 04671
9 stat [call site] 04672
9 strcpy [call site] 04673
9 stat [call site] 04674
9 strcpy [call site] 04675
9 stat [call site] 04676
9 strcpy [call site] 04677
9 stat [call site] 04678
9 strcpy [call site] 04679
9 stat [call site] 04680
9 strcpy [call site] 04681
9 stat [call site] 04682
9 strcpy [call site] 04683
9 stat [call site] 04684
8 hisremote [function] [call site] 04685
8 idx_filename [function] [call site] 04686
9 haddextension [function] [call site] 04687
10 find_scheme_handler [function] [call site] 04688
10 strncmp [call site] 04689
10 strchr [call site] 04690
10 strip_extension [function] [call site] 04691
10 kputsn [function] [call site] 04692
10 kputs [function] [call site] 04693
10 kputs [function] [call site] 04694
9 idx_test_and_fetch [function] [call site] 04695
9 haddextension [function] [call site] 04696
9 idx_test_and_fetch [function] [call site] 04697
8 idx_filename [function] [call site] 04698
8 idx_filename [function] [call site] 04699
8 idx_filename [function] [call site] 04700
8 idx_filename [function] [call site] 04701
8 idx_filename [function] [call site] 04702
8 hts_log [function] [call site] 04703
8 hts_idx_load3 [function] [call site] 04704
8 idx_read [function] [call site] 04705
6 hts_idx_get_meta [function] [call site] 04706
6 le_to_i32 [function] [call site] 04707
6 le_to_i32 [function] [call site] 04708
6 le_to_i32 [function] [call site] 04709
6 le_to_i32 [function] [call site] 04710
6 le_to_i32 [function] [call site] 04711
6 le_to_i32 [function] [call site] 04712
6 le_to_u32 [function] [call site] 04713
6 get_tid [function] [call site] 04714
7 kh_init_s2i [function] [call site] 04715
7 kh_put_s2i [function] [call site] 04716
7 strdup [call site] 04717
7 kh_get_s2i [function] [call site] 04718
6 __errno_location [call site] 04719
6 hts_log [function] [call site] 04720
6 strlen [call site] 04721
6 hts_log [function] [call site] 04722
6 tbx_destroy [function] [call site] 04723
7 hts_idx_destroy [function] [call site] 04724
7 kh_destroy_s2i [function] [call site] 04725
4 tbx_seqnames [function] [call site] 04726
5 calloc [call site] 04727
5 calloc [call site] 04728
5 __assert_fail [call site] 04729
5 __assert_fail [call site] 04730
4 bcf_hdr_get_hrec [function] [call site] 04731
5 ksprintf [function] [call site] 04732
5 get_hdr_aux [function] [call site] 04733
5 kh_get_hdict [function] [call site] 04734
5 ksprintf [function] [call site] 04735
5 get_hdr_aux [function] [call site] 04736
5 kh_get_hdict [function] [call site] 04737
5 strcmp [call site] 04738
5 bcf_hrec_find_key [function] [call site] 04739
5 kh_get_vdict [function] [call site] 04740
4 add_missing_contig_hrec [function] [call site] 04741
5 strdup [call site] 04742
5 bcf_hrec_add_key [function] [call site] 04743
5 bcf_hrec_set_val [function] [call site] 04744
5 bcf_hdr_add_hrec [function] [call site] 04745
5 __errno_location [call site] 04746
5 __errno_location [call site] 04747
5 hts_log [function] [call site] 04748
5 bcf_hrec_destroy [function] [call site] 04749
5 __errno_location [call site] 04750
4 bcf_hdr_sync [function] [call site] 04751
4 tbx_destroy [function] [call site] 04752
4 tbx_destroy [function] [call site] 04753
4 bcf_hdr_destroy [function] [call site] 04754
5 get_hdr_aux [function] [call site] 04755
5 kh_destroy_hdict [function] [call site] 04756
5 kh_destroy_vdict [function] [call site] 04757
5 bcf_hrec_destroy [function] [call site] 04758
3 hts_log [function] [call site] 04759
3 __assert_fail [call site] 04760
3 bcf_hdr_init [function] [call site] 04761
3 hts_log [function] [call site] 04762
3 bgzf_read [function] [call site] 04763
3 hts_log [function] [call site] 04764
3 bcf_hdr_destroy [function] [call site] 04765
3 strncmp [call site] 04766
3 hts_log [function] [call site] 04767
3 hts_log [function] [call site] 04768
3 bcf_hdr_destroy [function] [call site] 04769
3 bgzf_read [function] [call site] 04770
3 __errno_location [call site] 04771
3 bgzf_read [function] [call site] 04772
3 bcf_hdr_parse [function] [call site] 04773
3 hts_log [function] [call site] 04774
3 bcf_hdr_destroy [function] [call site] 04775
2 hts_close_or_abort [function] [call site] 04776
2 bcf_hdr_write [function] [call site] 04777
3 __errno_location [call site] 04778
3 bcf_hdr_sync [function] [call site] 04779
3 vcf_hdr_write [function] [call site] 04780
4 bcf_hdr_format [function] [call site] 04781
5 _bcf_hrec_format [function] [call site] 04782
6 ksprintf [function] [call site] 04783
6 strcmp [call site] 04784
6 kputc [function] [call site] 04785
6 ksprintf [function] [call site] 04786
6 ksprintf [function] [call site] 04787
6 ksprintf [function] [call site] 04788
5 ksprintf [function] [call site] 04789
5 ksprintf [function] [call site] 04790
5 ksprintf [function] [call site] 04791
5 ksprintf [function] [call site] 04792
4 bgzf_write [function] [call site] 04793
4 bgzf_flush [function] [call site] 04794
4 hwrite [function] [call site] 04795
3 bcf_hdr_format [function] [call site] 04796
3 kputc [function] [call site] 04797
3 bgzf_write [function] [call site] 04798
3 u32_to_le [function] [call site] 04799
3 bgzf_write [function] [call site] 04800
3 bgzf_write [function] [call site] 04801
2 bcf_hdr_destroy [function] [call site] 04802
2 hts_close_or_abort [function] [call site] 04803
2 bcf_init [function] [call site] 04804
3 calloc [call site] 04805
2 bcf_hdr_destroy [function] [call site] 04806
2 hts_close_or_abort [function] [call site] 04807
2 bcf_read [function] [call site] 04808
3 vcf_read [function] [call site] 04809
4 hts_getline [function] [call site] 04810
4 vcf_parse [function] [call site] 04811
5 bcf_clear [function] [call site] 04812
6 bcf_float_set [function] [call site] 04813
5 kstrtok [function] [call site] 04814
5 kh_get_vdict [function] [call site] 04815
5 hts_log [function] [call site] 04816
5 fix_chromosome [function] [call site] 04817
6 ksprintf [function] [call site] 04818
6 bcf_hdr_parse_line [function] [call site] 04819
6 bcf_hdr_add_hrec [function] [call site] 04820
6 bcf_hrec_destroy [function] [call site] 04821
6 bcf_hdr_sync [function] [call site] 04822
6 kh_get_vdict [function] [call site] 04823
5 hts_log [function] [call site] 04824
5 hts_str2uint [function] [call site] 04825
5 hts_log [function] [call site] 04826
5 hts_log [function] [call site] 04827
5 bcf_enc_vchar [function] [call site] 04828
6 bcf_enc_size [function] [call site] 04829
7 kputc [function] [call site] 04830
7 kputc [function] [call site] 04831
7 kputsn [function] [call site] 04832
7 i16_to_le [function] [call site] 04833
7 kputc [function] [call site] 04834
7 kputc [function] [call site] 04835
7 kputc [function] [call site] 04836
6 kputsn [function] [call site] 04837
5 bcf_enc_size [function] [call site] 04838
5 bcf_enc_vchar [function] [call site] 04839
5 strcmp [call site] 04840
5 bcf_seqname_safe [function] [call site] 04841
6 bcf_seqname [function] [call site] 04842
7 bcf_hdr_id2name [function] [call site] 04843
5 hts_log [function] [call site] 04844
5 bcf_enc_vchar [function] [call site] 04845
5 strcmp [call site] 04846
5 bcf_float_set [function] [call site] 04847
5 vcf_parse_filter [function] [call site] 04848
6 bcf_seqname_safe [function] [call site] 04849
6 hts_log [function] [call site] 04850
6 kstrtok [function] [call site] 04851
6 kh_get_vdict [function] [call site] 04852
6 hts_log [function] [call site] 04853
6 ksprintf [function] [call site] 04854
6 bcf_hdr_parse_line [function] [call site] 04855
6 bcf_hdr_add_hrec [function] [call site] 04856
6 bcf_hrec_destroy [function] [call site] 04857
6 bcf_hdr_sync [function] [call site] 04858
6 kh_get_vdict [function] [call site] 04859
6 bcf_seqname_safe [function] [call site] 04860
6 hts_log [function] [call site] 04861
6 bcf_enc_vint [function] [call site] 04862
7 bcf_enc_size [function] [call site] 04863
7 bcf_enc_int1 [function] [call site] 04864
8 bcf_enc_size [function] [call site] 04865
8 kputc [function] [call site] 04866
8 bcf_enc_size [function] [call site] 04867
8 kputc [function] [call site] 04868
8 bcf_enc_size [function] [call site] 04869
8 kputc [function] [call site] 04870
8 i16_to_le [function] [call site] 04871
8 bcf_enc_size [function] [call site] 04872
8 kputsn [function] [call site] 04873
8 i32_to_le [function] [call site] 04874
8 bcf_enc_size [function] [call site] 04875
8 kputsn [function] [call site] 04876
7 bcf_enc_size [function] [call site] 04877
7 kputc [function] [call site] 04878
7 kputc [function] [call site] 04879
7 kputc [function] [call site] 04880
7 bcf_enc_size [function] [call site] 04881
7 ks_resize [function] [call site] 04882
7 i16_to_le [function] [call site] 04883
7 bcf_enc_size [function] [call site] 04884
7 ks_resize [function] [call site] 04885
7 i32_to_le [function] [call site] 04886
5 bcf_enc_vint [function] [call site] 04887
5 strcmp [call site] 04888
5 vcf_parse_info [function] [call site] 04889
6 bcf_seqname_safe [function] [call site] 04890
6 hts_log [function] [call site] 04891
6 kh_get_vdict [function] [call site] 04892
6 hts_log [function] [call site] 04893
6 ksprintf [function] [call site] 04894
6 bcf_hdr_parse_line [function] [call site] 04895
6 bcf_hdr_add_hrec [function] [call site] 04896
6 bcf_hrec_destroy [function] [call site] 04897
6 bcf_hdr_sync [function] [call site] 04898
6 kh_get_vdict [function] [call site] 04899
6 bcf_seqname_safe [function] [call site] 04900
6 hts_log [function] [call site] 04901
6 bcf_enc_int1 [function] [call site] 04902
6 bcf_enc_size [function] [call site] 04903
6 bcf_enc_vchar [function] [call site] 04904
6 bcf_seqname_safe [function] [call site] 04905
6 hts_log [function] [call site] 04906
6 hts_str2int [function] [call site] 04907
6 bcf_seqname_safe [function] [call site] 04908
6 hts_log [function] [call site] 04909
6 bcf_enc_int1 [function] [call site] 04910
6 bcf_enc_vint [function] [call site] 04911
6 strcmp [call site] 04912
6 bcf_seqname_safe [function] [call site] 04913
6 hts_log [function] [call site] 04914
6 hts_str2dbl [function] [call site] 04915
6 bcf_float_set [function] [call site] 04916
6 bcf_enc_vfloat [function] [call site] 04917
7 __assert_fail [call site] 04918
7 bcf_enc_size [function] [call site] 04919
7 serialize_float_array [function] [call site] 04920
8 ks_resize [function] [call site] 04921
8 float_to_le [function] [call site] 04922
5 vcf_parse_format [function] [call site] 04923
6 bcf_seqname_safe [function] [call site] 04924
6 hts_log [function] [call site] 04925
6 kstrtok [function] [call site] 04926
6 bcf_seqname_safe [function] [call site] 04927
6 hts_log [function] [call site] 04928
6 kh_get_vdict [function] [call site] 04929
6 bcf_seqname_safe [function] [call site] 04930
6 hts_log [function] [call site] 04931
6 bcf_seqname_safe [function] [call site] 04932
6 ksprintf [function] [call site] 04933
6 bcf_hdr_parse_line [function] [call site] 04934
6 bcf_hdr_add_hrec [function] [call site] 04935
6 bcf_hrec_destroy [function] [call site] 04936
6 bcf_hdr_sync [function] [call site] 04937
6 kh_get_vdict [function] [call site] 04938
6 bcf_seqname_safe [function] [call site] 04939
6 hts_log [function] [call site] 04940
6 strcmp [call site] 04941
6 bcf_seqname_safe [function] [call site] 04942
6 hts_log [function] [call site] 04943
6 align_mem [function] [call site] 04944
7 kputsn [function] [call site] 04945
6 bcf_seqname_safe [function] [call site] 04946
6 bcf_seqname_safe [function] [call site] 04947
6 hts_log [function] [call site] 04948
6 ks_resize [function] [call site] 04949
6 bcf_seqname_safe [function] [call site] 04950
6 hts_log [function] [call site] 04951
6 bcf_seqname_safe [function] [call site] 04952
6 hts_log [function] [call site] 04953
6 hts_str2uint [function] [call site] 04954
6 bcf_seqname_safe [function] [call site] 04955
6 hts_log [function] [call site] 04956
6 bcf_seqname_safe [function] [call site] 04957
6 hts_log [function] [call site] 04958
6 hts_str2int [function] [call site] 04959
6 bcf_seqname_safe [function] [call site] 04960
6 hts_log [function] [call site] 04961
6 isdigit_c [function] [call site] 04962
6 bcf_float_set [function] [call site] 04963
6 hts_str2dbl [function] [call site] 04964
6 bcf_seqname [function] [call site] 04965
6 hts_log [function] [call site] 04966
6 bcf_float_set [function] [call site] 04967
6 bcf_float_set [function] [call site] 04968
6 bcf_seqname_safe [function] [call site] 04969
6 hts_log [function] [call site] 04970
6 hts_strprint [function] [call site] 04971
6 bcf_seqname_safe [function] [call site] 04972
6 hts_log [function] [call site] 04973
6 bcf_float_set [function] [call site] 04974
6 bcf_float_set [function] [call site] 04975
6 bcf_enc_int1 [function] [call site] 04976
6 bcf_enc_size [function] [call site] 04977
6 kputsn [function] [call site] 04978
6 bcf_enc_vint [function] [call site] 04979
6 bcf_enc_size [function] [call site] 04980
6 serialize_float_array [function] [call site] 04981
6 bcf_seqname_safe [function] [call site] 04982
6 hts_log [function] [call site] 04983
6 bcf_seqname_safe [function] [call site] 04984
6 hts_log [function] [call site] 04985
6 bcf_seqname_safe [function] [call site] 04986
6 hts_log [function] [call site] 04987
3 bcf_read1_core [function] [call site] 04988
4 bgzf_read [function] [call site] 04989
4 bcf_clear [function] [call site] 04990
4 le_to_u32 [function] [call site] 04991
4 ks_resize [function] [call site] 04992
4 le_to_u32 [function] [call site] 04993
4 ks_resize [function] [call site] 04994
4 le_to_i32 [function] [call site] 04995
4 le_to_u32 [function] [call site] 04996
4 le_to_i32 [function] [call site] 04997
4 le_to_float [function] [call site] 04998
4 le_to_u16 [function] [call site] 04999
4 le_to_u32 [function] [call site] 05000
4 bgzf_read [function] [call site] 05001
4 bgzf_read [function] [call site] 05002
3 bcf_record_check [function] [call site] 05003
4 hts_log [function] [call site] 05004
4 bcf_dec_size_safe [function] [call site] 05005
5 bcf_dec_typed_int1_safe [function] [call site] 05006
6 le_to_i16 [function] [call site] 05007
6 le_to_i32 [function] [call site] 05008
4 bcf_seqname_safe [function] [call site] 05009
4 get_type_name [function] [call site] 05010
4 bcf_seqname_safe [function] [call site] 05011
4 hts_log [function] [call site] 05012
4 bcf_dec_size_safe [function] [call site] 05013
4 bcf_seqname_safe [function] [call site] 05014
4 get_type_name [function] [call site] 05015
4 hts_log [function] [call site] 05016
4 bcf_dec_size_safe [function] [call site] 05017
4 bcf_seqname_safe [function] [call site] 05018
4 get_type_name [function] [call site] 05019
4 hts_log [function] [call site] 05020
4 bcf_dec_int1 [function] [call site] 05021
5 le_to_i8 [function] [call site] 05022
5 le_to_i16 [function] [call site] 05023
5 le_to_i32 [function] [call site] 05024
4 bcf_seqname_safe [function] [call site] 05025
4 hts_log [function] [call site] 05026
4 bcf_dec_typed_int1_safe [function] [call site] 05027
4 bcf_seqname_safe [function] [call site] 05028
4 hts_log [function] [call site] 05029
4 bcf_dec_size_safe [function] [call site] 05030
4 bcf_seqname_safe [function] [call site] 05031
4 get_type_name [function] [call site] 05032
4 hts_log [function] [call site] 05033
4 bcf_dec_typed_int1_safe [function] [call site] 05034
4 bcf_record_check_err [function] [call site] 05035
5 bcf_seqname_safe [function] [call site] 05036
4 bcf_dec_size_safe [function] [call site] 05037
4 bcf_record_check_err [function] [call site] 05038
4 bcf_seqname_safe [function] [call site] 05039
4 hts_log [function] [call site] 05040
4 bcf_seqname_safe [function] [call site] 05041
4 hts_log [function] [call site] 05042
4 bcf_seqname_safe [function] [call site] 05043
3 bcf_subset_format [function] [call site] 05044
4 bcf_unpack_fmt_core1 [function] [call site] 05045
5 bcf_dec_typed_int1 [function] [call site] 05046
6 bcf_dec_int1 [function] [call site] 05047
5 bcf_dec_size [function] [call site] 05048
6 bcf_dec_typed_int1 [function] [call site] 05049
2 bcf_write [function] [call site] 05050
3 bcf_hdr_sync [function] [call site] 05051
3 bcf_seqname_safe [function] [call site] 05052
3 vcf_write [function] [call site] 05053
4 vcf_format [function] [call site] 05054
5 bcf_seqname [function] [call site] 05055
5 hts_log [function] [call site] 05056
5 bcf_unpack [function] [call site] 05057
6 bcf_fmt_sized_array [function] [call site] 05058
7 bcf_dec_size [function] [call site] 05059
7 bcf_fmt_array [function] [call site] 05060
8 kputc [function] [call site] 05061
8 kputc [function] [call site] 05062
8 kputc [function] [call site] 05063
8 le_to_i8 [function] [call site] 05064
8 kputc [function] [call site] 05065
8 le_to_i16 [function] [call site] 05066
8 kputc [function] [call site] 05067
8 le_to_i32 [function] [call site] 05068
8 kputc [function] [call site] 05069
8 le_to_u32 [function] [call site] 05070
8 kputc [function] [call site] 05071
8 kputd [function] [call site] 05072
8 exit [call site] 05073
6 kputc [function] [call site] 05074
6 hts_realloc_or_die [function] [call site] 05075
6 bcf_fmt_sized_array [function] [call site] 05076
6 kputc [function] [call site] 05077
6 bcf_dec_size [function] [call site] 05078
6 hts_realloc_or_die [function] [call site] 05079
6 bcf_dec_int1 [function] [call site] 05080
6 hts_realloc_or_die [function] [call site] 05081
6 bcf_unpack_info_core1 [function] [call site] 05082
7 bcf_dec_typed_int1 [function] [call site] 05083
7 bcf_dec_size [function] [call site] 05084
7 le_to_i32 [function] [call site] 05085
7 le_to_float [function] [call site] 05086
7 le_to_i16 [function] [call site] 05087
7 le_to_i64 [function] [call site] 05088
8 le_to_u64 [function] [call site] 05089
6 hts_realloc_or_die [function] [call site] 05090
6 bcf_unpack_fmt_core1 [function] [call site] 05091
5 kputs [function] [call site] 05092
5 kputc [function] [call site] 05093
5 kputc [function] [call site] 05094
5 kputc [function] [call site] 05095
5 kputs [function] [call site] 05096
5 kputc [function] [call site] 05097
5 kputc [function] [call site] 05098
5 kputc [function] [call site] 05099
5 kputs [function] [call site] 05100
5 kputc [function] [call site] 05101
5 bcf_float_is_missing [function] [call site] 05102
5 kputd [function] [call site] 05103
5 kputc [function] [call site] 05104
5 bcf_seqname_safe [function] [call site] 05105
5 hts_log [function] [call site] 05106
5 kputc [function] [call site] 05107
5 kputs [function] [call site] 05108
5 kputc [function] [call site] 05109
5 kputc [function] [call site] 05110
5 kputc [function] [call site] 05111
5 bcf_seqname_safe [function] [call site] 05112
5 hts_log [function] [call site] 05113
5 __errno_location [call site] 05114
5 kputs [function] [call site] 05115
5 kputc [function] [call site] 05116
5 kputc [function] [call site] 05117
5 kputc [function] [call site] 05118
5 kputc [function] [call site] 05119
5 kputc [function] [call site] 05120
5 bcf_float_is_missing [function] [call site] 05121
5 kputc [function] [call site] 05122
5 kputd [function] [call site] 05123
5 kputc [function] [call site] 05124
5 bcf_seqname_safe [function] [call site] 05125
5 hts_log [function] [call site] 05126
5 bcf_fmt_array [function] [call site] 05127
5 kputc [function] [call site] 05128
5 kputc [function] [call site] 05129
5 kputc [function] [call site] 05130
5 bcf_seqname_safe [function] [call site] 05131
5 hts_log [function] [call site] 05132
5 kputs [function] [call site] 05133
5 strcmp [call site] 05134
5 kputc [function] [call site] 05135
5 kputc [function] [call site] 05136
5 bcf_format_gt [function] [call site] 05137
6 le_to_i8 [function] [call site] 05138
6 kputc [function] [call site] 05139
6 le_to_i16 [function] [call site] 05140
6 kputc [function] [call site] 05141
6 le_to_i32 [function] [call site] 05142
6 hts_log [function] [call site] 05143
5 bcf_fmt_array [function] [call site] 05144
5 kputc [function] [call site] 05145
5 kputs [function] [call site] 05146
5 kputc [function] [call site] 05147
4 bgzf_flush_try [function] [call site] 05148
4 hts_idx_amend_last [function] [call site] 05149
4 hwrite [function] [call site] 05150
4 bcf_seqname_safe [function] [call site] 05151
4 hts_idx_tbi_name [function] [call site] 05152
5 strlen [call site] 05153
5 realloc [call site] 05154
5 strcpy [call site] 05155
5 le_to_u32 [function] [call site] 05156
4 hts_idx_push [function] [call site] 05157
3 bcf_strerror [function] [call site] 05158
4 add_desc_to_buffer [function] [call site] 05159
5 strlen [call site] 05160
5 snprintf [call site] 05161
5 snprintf [call site] 05162
4 add_desc_to_buffer [function] [call site] 05163
3 bcf_seqname_safe [function] [call site] 05164
3 hts_log [function] [call site] 05165
3 bcf1_sync [function] [call site] 05166
4 bcf1_sync_id [function] [call site] 05167
5 strcmp [call site] 05168
5 bcf_enc_vchar [function] [call site] 05169
5 bcf_enc_size [function] [call site] 05170
4 bcf1_sync_alleles [function] [call site] 05171
5 strlen [call site] 05172
5 bcf_enc_vchar [function] [call site] 05173
5 strlen [call site] 05174
4 bcf1_sync_filter [function] [call site] 05175
5 bcf_enc_vint [function] [call site] 05176
5 bcf_enc_vint [function] [call site] 05177
4 bcf1_sync_info [function] [call site] 05178
5 kputsn_ [function] [call site] 05179
4 bcf_unpack [function] [call site] 05180
4 bcf1_sync_id [function] [call site] 05181
4 kputsn_ [function] [call site] 05182
4 bcf1_sync_alleles [function] [call site] 05183
4 kputsn_ [function] [call site] 05184
4 bcf1_sync_filter [function] [call site] 05185
4 bcf_enc_vint [function] [call site] 05186
4 bcf1_sync_info [function] [call site] 05187
4 kputsn_ [function] [call site] 05188
4 kputsn_ [function] [call site] 05189
3 bcf_seqname_safe [function] [call site] 05190
3 u32_to_le [function] [call site] 05191
3 u32_to_le [function] [call site] 05192
3 i32_to_le [function] [call site] 05193
3 u32_to_le [function] [call site] 05194
3 u32_to_le [function] [call site] 05195
3 float_to_le [function] [call site] 05196
3 u16_to_le [function] [call site] 05197
3 u16_to_le [function] [call site] 05198
3 u32_to_le [function] [call site] 05199
3 bgzf_write [function] [call site] 05200
3 bgzf_write [function] [call site] 05201
3 bgzf_write [function] [call site] 05202
3 hts_idx_push [function] [call site] 05203
2 bcf_destroy [function] [call site] 05204
3 bcf_empty [function] [call site] 05205
4 bcf_clear [function] [call site] 05206
2 bcf_hdr_destroy [function] [call site] 05207
2 hts_close_or_abort [function] [call site] 05208