Fuzz introspector: hts_open_fuzzer
For issues and ideas: https://github.com/ossf/fuzz-introspector/issues

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
3927 3927 3 :

['cram_flush_result', 'hts_tpool_process_destroy', 'hts_tpool_process_flush']

3961 11030 cram_close call site: 03116 /src/htslib/cram/cram_io.c:5581
2816 7861 8 :

['hts_detect_format2', 'hopen_htsget_redirect', 'cram_set_option', 'hts_process_opts', 'bgzf_hopen', 'cram_dopen', '__errno_location', 'hts_crypt4gh_redirect']

2816 7906 hts_hopen call site: 00325 /src/htslib/hts.c:1507
2623 2623 1 :

['hts_process_opts']

2623 2632 hts_hopen call site: 01524 /src/htslib/hts.c:1599
2541 2568 5 :

['strerror', '__errno_location', 'hts_log', 'hts_opt_apply', 'hclose_abruptly']

2541 2568 hts_open_format call site: 03183 /src/htslib/hts.c:965
1854 1854 1 :

['cram_load_reference']

1854 5525 sam_hdr_write call site: 03385 /src/htslib/sam.c:2243
1673 3100 7 :

['cram_ref_load', 'cram_ref_incr_locked', 'strcmp', 'free', 'bgzf_open_ref', 'bgzf_close', 'load_ref_portion']

1697 3124 cram_get_ref call site: 01886 /src/htslib/cram/cram_io.c:3468
1490 3416 11 :

['hts_md5_hex', 'hts_md5_destroy', 'hts_md5_final', 'full_path', 'hts_md5_init', 'hts_md5_update', 'sam_hrecs_find_key', 'cram_get_ref', 'cram_ref_decr', 'sam_hrecs_find_type_id', 'sam_hdr_update_line']

1496 7553 cram_write_SAM_hdr call site: 03403 /src/htslib/cram/cram_io.c:4944
1038 1038 1 :

['bcf_hdr_append']

1038 1038 bcf_hdr_init call site: 04512 /src/htslib/vcf.c:1504
605 605 1 :

['s3_rewrite']

605 605 s3_open call site: 00000 /src/htslib/hfile_s3.c:1395
601 653 10 :

['hts_md5_destroy', 'sam_hdr_find_tag_id', 'hts_md5_final', 'memcmp', 'ks_free.2359', 'hts_md5_init', 'hts_md5_update', 'md5_print', 'sam_hdr_tid2name', 'cram_get_block_by_id']

1619 3983 cram_decode_slice call site: 02960 /src/htslib/cram/cram_decode.c:2406
592 592 15 :

['pthread_mutex_lock', 'ks_release.4453', 'kputs.4451', 'free_auth', 'pthread_mutex_unlock', 'free', 'add_auth_header', 'strcspn', 'strncmp', 'kputsn_.4461', 'kh_put_auth_map', 'kh_get_auth_map', 'calloc', 'pthread_mutex_init', 'strstr']

592 592 get_auth_token call site: 00000 /src/htslib/hfile_libcurl.c:615
581 596 2 :

['sam_hdr_add_line', 'sam_hrecs_find_rg']

2077 8818 cram_write_SAM_hdr call site: 03391 /src/htslib/cram/cram_io.c:4909

Fuzzer calltree

0 LLVMFuzzerTestOneInput [function] [call site] 00000
1 abort [call site] 00001
1 hopen [function] [call site] 00002
2 find_scheme_handler [function] [call site] 00003
3 isalnum_c [function] [call site] 00004
4 __ctype_b_loc [call site] 00005
3 tolower_c [function] [call site] 00006
4 tolower [call site] 00007
3 pthread_mutex_lock [call site] 00008
3 load_hfile_plugins [function] [call site] 00009
4 kh_init_scheme_string [function] [call site] 00010
5 calloc [call site] 00011
4 hfile_add_scheme_handler [function] [call site] 00012
5 hts_log [function] [call site] 00013
6 __errno_location [call site] 00014
6 get_severity_tag [function] [call site] 00015
6 fprintf [call site] 00016
6 vfprintf [call site] 00017
6 fprintf [call site] 00018
6 __errno_location [call site] 00019
5 try_exe_add_scheme_handler [function] [call site] 00020
5 hts_log [function] [call site] 00021
5 kh_put_scheme_string [function] [call site] 00022
6 kh_resize_scheme_string [function] [call site] 00023
7 realloc [call site] 00024
7 __ac_FNV1a_hash_string [function] [call site] 00025
6 strcmp [call site] 00026
5 __errno_location [call site] 00027
5 strerror [call site] 00028
5 hts_log [function] [call site] 00029
5 priority [function] [call site] 00030
4 hfile_add_scheme_handler [function] [call site] 00031
4 hfile_add_scheme_handler [function] [call site] 00032
4 init_add_plugin [function] [call site] 00033
5 hts_log [function] [call site] 00034
5 hts_log [function] [call site] 00035
5 hts_log [function] [call site] 00036
4 hfile_plugin_init_mem [function] [call site] 00037
5 hfile_add_scheme_handler [function] [call site] 00038
4 init_add_plugin [function] [call site] 00039
4 hfile_plugin_init_crypt4gh_needed [function] [call site] 00040
5 hfile_add_scheme_handler [function] [call site] 00041
4 init_add_plugin [function] [call site] 00042
4 hfile_plugin_init_libcurl [function] [call site] 00043
5 hts_version [function] [call site] 00044
5 curl_global_init [call site] 00045
5 easy_errno [function] [call site] 00046
6 curl_easy_getinfo [call site] 00047
6 curl_easy_getinfo [call site] 00048
6 http_status_errno [function] [call site] 00049
6 curl_easy_strerror [call site] 00050
6 hts_log [function] [call site] 00051
5 __errno_location [call site] 00052
5 curl_share_init [call site] 00053
5 curl_global_cleanup [call site] 00054
5 __errno_location [call site] 00055
5 curl_share_setopt [call site] 00056
5 share_lock [function] [call site] 00057
6 pthread_mutex_lock [call site] 00058
5 curl_share_setopt [call site] 00059
5 share_unlock [function] [call site] 00060
6 pthread_mutex_unlock [call site] 00061
5 curl_share_setopt [call site] 00062
5 curl_share_cleanup [call site] 00063
5 curl_global_cleanup [call site] 00064
5 __errno_location [call site] 00065
5 getenv [call site] 00066
5 strdup [call site] 00067
5 kh_init_auth_map [function] [call site] 00068
6 calloc [call site] 00069
5 __errno_location [call site] 00070
5 kh_destroy_auth_map [function] [call site] 00071
5 curl_share_cleanup [call site] 00072
5 curl_global_cleanup [call site] 00073
5 __errno_location [call site] 00074
5 getenv [call site] 00075
5 strcmp [call site] 00076
5 curl_version_info [call site] 00077
5 ksprintf [function] [call site] 00078
6 kvsprintf [function] [call site] 00079
7 kputd [function] [call site] 00080
8 kputsn [function] [call site] 00081
9 __errno_location [call site] 00082
9 ks_resize [function] [call site] 00083
10 realloc [call site] 00084
8 kputsn [function] [call site] 00085
8 kputc [function] [call site] 00086
9 ks_resize [function] [call site] 00087
8 ks_resize [function] [call site] 00088
8 snprintf [call site] 00089
8 kputsn [function] [call site] 00090
7 vsnprintf [call site] 00091
7 ks_resize [function] [call site] 00092
7 vsnprintf [call site] 00093
5 hfile_add_scheme_handler [function] [call site] 00094
4 init_add_plugin [function] [call site] 00095
4 hfile_plugin_init_gcs [function] [call site] 00096
5 hfile_add_scheme_handler [function] [call site] 00097
5 hfile_add_scheme_handler [function] [call site] 00098
5 hfile_add_scheme_handler [function] [call site] 00099
4 init_add_plugin [function] [call site] 00100
4 hfile_plugin_init_s3 [function] [call site] 00101
5 hfile_add_scheme_handler [function] [call site] 00102
5 hfile_add_scheme_handler [function] [call site] 00103
5 hfile_add_scheme_handler [function] [call site] 00104
4 init_add_plugin [function] [call site] 00105
4 hfile_plugin_init_s3_write [function] [call site] 00106
5 hts_version [function] [call site] 00107
5 curl_global_init [call site] 00108
5 curl_share_init [call site] 00109
5 curl_global_cleanup [call site] 00110
5 __errno_location [call site] 00111
5 curl_share_setopt [call site] 00112
5 share_lock [function] [call site] 00113
6 pthread_mutex_lock [call site] 00114
5 curl_share_setopt [call site] 00115
5 share_unlock [function] [call site] 00116
6 pthread_mutex_unlock [call site] 00117
5 curl_share_setopt [call site] 00118
5 curl_share_cleanup [call site] 00119
5 curl_global_cleanup [call site] 00120
5 __errno_location [call site] 00121
5 curl_version_info [call site] 00122
5 ksprintf [function] [call site] 00123
5 hfile_add_scheme_handler [function] [call site] 00124
5 hfile_add_scheme_handler [function] [call site] 00125
5 hfile_add_scheme_handler [function] [call site] 00126
4 atexit [call site] 00127
4 hfile_exit [function] [call site] 00128
5 hfile_shutdown [function] [call site] 00129
6 pthread_mutex_lock [call site] 00130
6 kh_destroy_scheme_string [function] [call site] 00131
6 pthread_mutex_unlock [call site] 00132
5 pthread_mutex_destroy [call site] 00133
3 pthread_mutex_unlock [call site] 00134
3 pthread_mutex_unlock [call site] 00135
3 kh_get_scheme_string [function] [call site] 00136
2 strchr [call site] 00137
2 strcmp [call site] 00138
2 hopen_fd_stdinout [function] [call site] 00139
3 strchr [call site] 00140
3 snprintf [call site] 00141
3 hdopen [function] [call site] 00142
4 blksize [function] [call site] 00143
5 fstat [call site] 00144
4 hfile_init [function] [call site] 00145
5 strchr [call site] 00146
5 posix_memalign [call site] 00147
5 strchr [call site] 00148
5 hfile_destroy [function] [call site] 00149
6 __errno_location [call site] 00150
6 __errno_location [call site] 00151
4 strchr [call site] 00152
4 strchr [call site] 00153
2 hopen_fd [function] [call site] 00154
3 hfile_oflags [function] [call site] 00155
3 open [call site] 00156
3 blksize [function] [call site] 00157
3 hfile_init [function] [call site] 00158
3 __errno_location [call site] 00159
3 close [call site] 00160
3 hfile_destroy [function] [call site] 00161
1 hts_hopen [function] [call site] 00162
2 calloc [call site] 00163
2 strdup [call site] 00164
2 ed_is_big [function] [call site] 00165
2 strchr [call site] 00166
2 strncpy [call site] 00167
2 strncpy [call site] 00168
2 strchr [call site] 00169
2 hts_detect_format2 [function] [call site] 00170
3 hpeek [function] [call site] 00171
4 refill_buffer [function] [call site] 00172
5 __errno_location [call site] 00173
3 memcmp [call site] 00174
3 memcmp [call site] 00175
3 decompress_peek_gz [function] [call site] 00176
4 hpeek [function] [call site] 00177
4 inflateInit2_ [call site] 00178
4 inflate [call site] 00179
4 inflateReset [call site] 00180
4 inflateEnd [call site] 00181
3 memcmp [call site] 00182
3 memcmp [call site] 00183
3 memcmp [call site] 00184
3 memcmp [call site] 00185
3 decompress_peek_xz [function] [call site] 00186
4 hpeek [function] [call site] 00187
4 lzma_easy_decoder_memusage [call site] 00188
4 lzma_stream_decoder [call site] 00189
4 lzma_code [call site] 00190
4 lzma_end [call site] 00191
4 lzma_end [call site] 00192
3 memcmp [call site] 00193
3 hpeek [function] [call site] 00194
3 strcmp [call site] 00195
3 find_file_extension [function] [call site] 00196
4 strstr [call site] 00197
4 strlen [call site] 00198
3 tolower_c [function] [call site] 00199
3 memcmp [call site] 00200
3 memcmp [call site] 00201
3 memcmp [call site] 00202
3 memcmp [call site] 00203
3 memcmp [call site] 00204
3 memcmp [call site] 00205
3 memcmp [call site] 00206
3 strcmp [call site] 00207
3 memcmp [call site] 00208
3 parse_version [function] [call site] 00209
4 isdigit_c [function] [call site] 00210
5 __ctype_b_loc [call site] 00211
4 isdigit_c [function] [call site] 00212
3 memcmp [call site] 00213
3 memcmp [call site] 00214
3 memcmp [call site] 00215
3 memcmp [call site] 00216
3 parse_version [function] [call site] 00217
3 memcmp [call site] 00218
3 cmp_nonblank [function] [call site] 00219
4 isspace_c [function] [call site] 00220
5 __ctype_b_loc [call site] 00221
3 memcmp [call site] 00222
3 is_fastaq [function] [call site] 00223
4 memchr [call site] 00224
4 is_text_only [function] [call site] 00225
4 toupper [call site] 00226
3 is_fastaq [function] [call site] 00227
3 parse_tabbed_text [function] [call site] 00228
4 isdigit_c [function] [call site] 00229
4 strchr [call site] 00230
4 isdigit_c [function] [call site] 00231
3 colmatch [function] [call site] 00232
3 colmatch [function] [call site] 00233
3 strstr [call site] 00234
3 colmatch [function] [call site] 00235
3 strstr [call site] 00236
3 colmatch [function] [call site] 00237
3 colmatch [function] [call site] 00238
3 is_text_only [function] [call site] 00239
2 __errno_location [call site] 00240
2 hopen_htsget_redirect [function] [call site] 00241
3 hfile_init [function] [call site] 00242
3 parse_ga4gh_redirect_json [function] [call site] 00243
4 hts_json_fnext [function] [call site] 00244
5 hgetc [function] [call site] 00245
6 hgetc2 [function] [call site] 00246
7 refill_buffer [function] [call site] 00247
5 fscan_string [function] [call site] 00248
6 hgetc [function] [call site] 00249
6 hgetc [function] [call site] 00250
6 kputc [function] [call site] 00251
6 kputc [function] [call site] 00252
6 kputc [function] [call site] 00253
6 kputc [function] [call site] 00254
6 kputc [function] [call site] 00255
6 kputc [function] [call site] 00256
6 hgetc [function] [call site] 00257
6 dehex [function] [call site] 00258
6 hgetc [function] [call site] 00259
6 dehex [function] [call site] 00260
6 hgetc [function] [call site] 00261
6 dehex [function] [call site] 00262
6 hgetc [function] [call site] 00263
6 dehex [function] [call site] 00264
6 encode_utf8 [function] [call site] 00265
6 kputsn [function] [call site] 00266
6 kputc [function] [call site] 00267
5 kputsn [function] [call site] 00268
5 kputc [function] [call site] 00269
5 hpeek [function] [call site] 00270
5 strchr [call site] 00271
5 hgetc [function] [call site] 00272
5 kputc [function] [call site] 00273
5 token_type [function] [call site] 00274
6 strcmp [call site] 00275
6 strcmp [call site] 00276
6 strcmp [call site] 00277
4 hts_json_fnext [function] [call site] 00278
4 strcmp [call site] 00279
4 parse_ga4gh_body_json [function] [call site] 00280
5 hts_json_fnext [function] [call site] 00281
5 hts_json_fnext [function] [call site] 00282
5 strcmp [call site] 00283
5 hts_json_fnext [function] [call site] 00284
5 hts_json_fnext [function] [call site] 00285
5 hts_realloc_or_die [function] [call site] 00286
6 __errno_location [call site] 00287
6 realloc [call site] 00288
6 __errno_location [call site] 00289
6 strerror [call site] 00290
6 hts_log [function] [call site] 00291
6 exit [call site] 00292
5 hts_json_fnext [function] [call site] 00293
5 strcmp [call site] 00294
5 hts_json_fnext [function] [call site] 00295
5 ks_release [function] [call site] 00296
5 strcmp [call site] 00297
5 hts_json_fnext [function] [call site] 00298
5 hts_json_fnext [function] [call site] 00299
5 hts_json_fnext [function] [call site] 00300
5 kputs [function] [call site] 00301
6 __errno_location [call site] 00302
6 strlen [call site] 00303
6 kputsn [function] [call site] 00304
5 kputs [function] [call site] 00305
5 hts_realloc_or_die [function] [call site] 00306
5 ks_release [function] [call site] 00307
5 hts_json_fskip_value [function] [call site] 00308
6 skip_value [function] [call site] 00309
6 fnext [function] [call site] 00310
7 hts_json_fnext [function] [call site] 00311
5 strcmp [call site] 00312
5 hts_json_fnext [function] [call site] 00313
5 hts_log [function] [call site] 00314
5 hts_json_fskip_value [function] [call site] 00315
4 hts_json_fnext [function] [call site] 00316
3 free_all_parts [function] [call site] 00317
4 free_part [function] [call site] 00318
3 hfile_destroy [function] [call site] 00319
3 __errno_location [call site] 00320
2 hclose_abruptly [function] [call site] 00321
3 __errno_location [call site] 00322
3 hfile_destroy [function] [call site] 00323
3 __errno_location [call site] 00324
2 hts_crypt4gh_redirect [function] [call site] 00325
3 strlen [call site] 00326
3 snprintf [call site] 00327
3 strchr [call site] 00328
3 snprintf [call site] 00329
3 hopen [function] [call site] 00330
2 hts_detect_format2 [function] [call site] 00331
2 strchr [call site] 00332
2 strchr [call site] 00333
2 strchr [call site] 00334
2 strchr [call site] 00335
2 strchr [call site] 00336
2 strchr [call site] 00337
2 strchr [call site] 00338
2 strchr [call site] 00339
2 abort [call site] 00340
2 format_category [function] [call site] 00341
2 __errno_location [call site] 00342
2 bgzf_hopen [function] [call site] 00343
3 strchr [call site] 00344
3 bgzf_read_init [function] [call site] 00345
4 hpeek [function] [call site] 00346
4 calloc [call site] 00347
4 memcmp [call site] 00348
4 memcmp [call site] 00349
4 hts_log [function] [call site] 00350
4 razf_info [function] [call site] 00351
5 strcmp [call site] 00352
5 hseek [function] [call site] 00353
6 writebuffer_is_nonempty [function] [call site] 00354
6 flush_buffer [function] [call site] 00355
7 __errno_location [call site] 00356
6 htell [function] [call site] 00357
6 __errno_location [call site] 00358
6 __errno_location [call site] 00359
6 __errno_location [call site] 00360
5 hread [function] [call site] 00361
6 hread2 [function] [call site] 00362
7 __errno_location [call site] 00363
7 refill_buffer [function] [call site] 00364
5 ed_is_big [function] [call site] 00365
5 ed_swap_8p [function] [call site] 00366
6 ed_swap_8 [function] [call site] 00367
5 hts_log [function] [call site] 00368
5 hts_log [function] [call site] 00369
4 __errno_location [call site] 00370
4 kh_init_cache [function] [call site] 00371
5 calloc [call site] 00372
3 strchr [call site] 00373
3 bgzf_write_init [function] [call site] 00374
4 calloc [call site] 00375
4 mode2level [function] [call site] 00376
5 strchr [call site] 00377
4 strchr [call site] 00378
4 calloc [call site] 00379
4 deflateInit2_ [call site] 00380
4 bgzf_zerr [function] [call site] 00381
5 strerror [call site] 00382
5 snprintf [call site] 00383
4 hts_log [function] [call site] 00384
4 __errno_location [call site] 00385
4 strerror [call site] 00386
4 hts_log [function] [call site] 00387
3 __errno_location [call site] 00388
3 ed_is_big [function] [call site] 00389
2 cram_dopen [function] [call site] 00390
3 calloc [call site] 00391
3 cram_read_file_def [function] [call site] 00392
4 hread [function] [call site] 00393
4 memcmp [call site] 00394
4 hts_log [function] [call site] 00395
3 cram_init_tables [function] [call site] 00396
4 cram_init_varint [function] [call site] 00397
3 cram_read_SAM_hdr [function] [call site] 00398
4 int32_decode [function] [call site] 00399
5 hread [function] [call site] 00400
4 hread [function] [call site] 00401
4 cram_read_container [function] [call site] 00402
5 int32_decode [function] [call site] 00403
5 crc32 [call site] 00404
5 calloc [call site] 00405
5 __errno_location [call site] 00406
5 cram_free_container [function] [call site] 00407
6 cram_free_compression_header [function] [call site] 00408
7 kh_destroy_map [function] [call site] 00409
7 cram_free_block [function] [call site] 00410
7 kh_destroy_m_s2i [function] [call site] 00411
7 string_pool_destroy [function] [call site] 00412
6 cram_free_block [function] [call site] 00413
6 cram_free_slice [function] [call site] 00414
7 cram_free_block [function] [call site] 00415
7 cram_free_block [function] [call site] 00416
7 cram_free_block [function] [call site] 00417
7 cram_free_slice_header [function] [call site] 00418
7 cram_free_block [function] [call site] 00419
7 cram_free_block [function] [call site] 00420
7 cram_free_block [function] [call site] 00421
7 cram_free_block [function] [call site] 00422
7 cram_free_block [function] [call site] 00423
7 cram_free_block [function] [call site] 00424
7 string_pool_destroy [function] [call site] 00425
7 kh_destroy_m_s2i [function] [call site] 00426
7 kh_destroy_m_s2i [function] [call site] 00427
6 cram_free_slice [function] [call site] 00428
6 cram_stats_free [function] [call site] 00429
7 kh_destroy_m_i2i [function] [call site] 00430
6 cram_free_block [function] [call site] 00431
6 cram_free_block [function] [call site] 00432
6 kh_destroy_m_tagmap [function] [call site] 00433
6 free_bam_list [function] [call site] 00434
7 bam_destroy1 [function] [call site] 00435
8 bam_get_mempolicy [function] [call site] 00436
8 bam_get_mempolicy [function] [call site] 00437
8 bam_get_mempolicy [function] [call site] 00438
5 __errno_location [call site] 00439
5 cram_free_container [function] [call site] 00440
5 cram_free_container [function] [call site] 00441
5 int32_decode [function] [call site] 00442
5 cram_free_container [function] [call site] 00443
5 hts_log [function] [call site] 00444
5 cram_free_container [function] [call site] 00445
4 cram_free_container [function] [call site] 00446
4 cram_read_block [function] [call site] 00447
5 hgetc [function] [call site] 00448
5 crc32 [call site] 00449
5 hgetc [function] [call site] 00450
5 crc32 [call site] 00451
5 hread [function] [call site] 00452
5 hread [function] [call site] 00453
5 int32_decode [function] [call site] 00454
4 cram_free_container [function] [call site] 00455
4 cram_uncompress_block [function] [call site] 00456
5 crc32 [call site] 00457
5 hts_log [function] [call site] 00458
5 __assert_fail [call site] 00459
5 zlib_mem_inflate [function] [call site] 00460
6 inflateInit2_ [call site] 00461
6 hts_log [function] [call site] 00462
6 inflate [call site] 00463
6 hts_log [function] [call site] 00464
6 inflateEnd [call site] 00465
6 realloc [call site] 00466
6 inflateEnd [call site] 00467
6 inflateEnd [call site] 00468
5 BZ2_bzBuffToBuffDecompress [call site] 00469
5 lzma_mem_inflate [function] [call site] 00470
6 lzma_easy_decoder_memusage [call site] 00471
6 lzma_stream_decoder [call site] 00472
6 realloc [call site] 00473
6 lzma_code [call site] 00474
6 hts_log [function] [call site] 00475
6 lzma_code [call site] 00476
6 hts_log [function] [call site] 00477
6 realloc [call site] 00478
6 lzma_end [call site] 00479
6 lzma_end [call site] 00480
5 rans_uncompress [function] [call site] 00481
6 rans_uncompress_O1 [function] [call site] 00482
7 htscodecs_tls_calloc [function] [call site] 00483
8 htscodecs_tls_alloc [function] [call site] 00484
9 pthread_once [call site] 00485
9 htscodecs_tls_init [function] [call site] 00486
10 pthread_key_create [call site] 00487
10 htscodecs_tls_free_all [function] [call site] 00488
11 fprintf [call site] 00489
9 strerror [call site] 00490
9 fprintf [call site] 00491
9 pthread_getspecific [call site] 00492
9 calloc [call site] 00493
9 pthread_setspecific [call site] 00494
9 fprintf [call site] 00495
9 calloc [call site] 00496
7 RansDecSymbolInit32 [function] [call site] 00497
8 __assert_fail [call site] 00498
8 __assert_fail [call site] 00499
7 RansDecInit [function] [call site] 00500
7 RansDecInit [function] [call site] 00501
7 RansDecInit [function] [call site] 00502
7 RansDecInit [function] [call site] 00503
7 RansDecAdvanceStep [function] [call site] 00504
7 RansDecAdvanceStep [function] [call site] 00505
7 RansDecAdvanceStep [function] [call site] 00506
7 RansDecAdvanceStep [function] [call site] 00507
7 RansDecRenorm2 [function] [call site] 00508
7 RansDecRenorm2 [function] [call site] 00509
7 RansDecRenormSafe [function] [call site] 00510
7 RansDecRenormSafe [function] [call site] 00511
7 RansDecRenormSafe [function] [call site] 00512
7 RansDecRenormSafe [function] [call site] 00513
7 RansDecGet [function] [call site] 00514
7 RansDecRenormSafe [function] [call site] 00515
7 htscodecs_tls_free [function] [call site] 00516
8 pthread_getspecific [call site] 00517
8 fprintf [call site] 00518
8 fprintf [call site] 00519
6 rans_uncompress_O0 [function] [call site] 00520
7 RansDecInit [function] [call site] 00521
7 RansDecInit [function] [call site] 00522
7 RansDecInit [function] [call site] 00523
7 RansDecInit [function] [call site] 00524
7 RansDecRenorm2 [function] [call site] 00525
7 RansDecRenorm2 [function] [call site] 00526
7 RansDecRenormSafe [function] [call site] 00527
7 RansDecRenormSafe [function] [call site] 00528
7 RansDecRenormSafe [function] [call site] 00529
7 RansDecRenormSafe [function] [call site] 00530
5 fqz_decompress [function] [call site] 00531
6 uncompress_block_fqz2f [function] [call site] 00532
7 var_get_u32 [function] [call site] 00533
7 fqz_read_parameters [function] [call site] 00534
8 read_array [function] [call site] 00535
8 fqz_read_parameters1 [function] [call site] 00536
9 read_array [function] [call site] 00537
9 read_array [function] [call site] 00538
9 read_array [function] [call site] 00539
8 fqz_free_parameters [function] [call site] 00540
7 fqz_create_models [function] [call site] 00541
8 htscodecs_tls_alloc [function] [call site] 00542
8 SIMPLE_MODEL256_init [function] [call site] 00543
8 SIMPLE_MODEL256_init [function] [call site] 00544
8 SIMPLE_MODEL2_init [function] [call site] 00545
8 SIMPLE_MODEL2_init [function] [call site] 00546
8 SIMPLE_MODEL256_init [function] [call site] 00547
7 RC_SetInput [function] [call site] 00548
7 RC_StartDecode [function] [call site] 00549
7 realloc [call site] 00550
7 realloc [call site] 00551
7 decompress_new_read [function] [call site] 00552
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00553
9 RC_GetFreq [function] [call site] 00554
9 RC_Decode [function] [call site] 00555
9 SIMPLE_MODEL256_normalize [function] [call site] 00556
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00557
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00558
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00559
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00560
8 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00561
9 SIMPLE_MODEL2_normalize [function] [call site] 00562
8 SIMPLE_MODEL2_decodeSymbol [function] [call site] 00563
7 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00564
7 fqz_update_ctx [function] [call site] 00565
7 realloc [call site] 00566
7 realloc [call site] 00567
7 RC_FinishDecode [function] [call site] 00568
7 fqz_destroy_models [function] [call site] 00569
8 htscodecs_tls_free [function] [call site] 00570
7 fqz_free_parameters [function] [call site] 00571
7 fqz_destroy_models [function] [call site] 00572
7 fqz_free_parameters [function] [call site] 00573
5 rans_uncompress_4x16 [function] [call site] 00574
6 rans_uncompress_to_4x16 [function] [call site] 00575
7 var_get_u32 [function] [call site] 00576
7 var_get_u32 [function] [call site] 00577
7 rans_uncompress_to_4x16 [function] [call site] 00578
8 unstripe [function] [call site] 00579
8 var_get_u32 [function] [call site] 00580
8 hts_unpack_meta [function] [call site] 00581
8 var_get_u32 [function] [call site] 00582
8 var_get_u32 [function] [call site] 00583
8 var_get_u32 [function] [call site] 00584
8 var_get_u32 [function] [call site] 00585
8 rans_dec_func [function] [call site] 00586
9 pthread_once [call site] 00587
9 htscodecs_tls_cpu_init [function] [call site] 00588
10 __get_cpuid_max [function] [call site] 00589
9 strerror [call site] 00590
9 fprintf [call site] 00591
9 fprintf [call site] 00592
8 rans_dec_func [function] [call site] 00593
8 hts_rle_decode [function] [call site] 00594
9 var_get_u32 [function] [call site] 00595
8 hts_unpack [function] [call site] 00596
5 arith_uncompress_to [function] [call site] 00597
6 var_get_u32 [function] [call site] 00598
6 var_get_u32 [function] [call site] 00599
6 arith_uncompress_to [function] [call site] 00600
7 unstripe [function] [call site] 00601
7 var_get_u32 [function] [call site] 00602
7 hts_unpack_meta [function] [call site] 00603
7 var_get_u32 [function] [call site] 00604
7 BZ2_bzBuffToBuffDecompress [call site] 00605
7 arith_uncompress_O1_RLE [function] [call site] 00606
8 htscodecs_tls_alloc [function] [call site] 00607
8 SIMPLE_MODEL256_init [function] [call site] 00608
8 htscodecs_tls_alloc [function] [call site] 00609
8 htscodecs_tls_free [function] [call site] 00610
8 SIMPLE_MODEL258_init [function] [call site] 00611
8 RC_SetInput [function] [call site] 00612
8 RC_StartDecode [function] [call site] 00613
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00614
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00615
9 SIMPLE_MODEL258_normalize [function] [call site] 00616
8 RC_FinishDecode [function] [call site] 00617
8 htscodecs_tls_free [function] [call site] 00618
8 htscodecs_tls_free [function] [call site] 00619
8 htscodecs_tls_free [function] [call site] 00620
8 htscodecs_tls_free [function] [call site] 00621
7 arith_uncompress_O0_RLE [function] [call site] 00622
8 SIMPLE_MODEL256_init [function] [call site] 00623
8 htscodecs_tls_alloc [function] [call site] 00624
8 SIMPLE_MODEL258_init [function] [call site] 00625
8 RC_SetInput [function] [call site] 00626
8 RC_StartDecode [function] [call site] 00627
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00628
8 SIMPLE_MODEL258_decodeSymbol [function] [call site] 00629
8 RC_FinishDecode [function] [call site] 00630
8 htscodecs_tls_free [function] [call site] 00631
8 htscodecs_tls_free [function] [call site] 00632
7 arith_uncompress_O1 [function] [call site] 00633
8 htscodecs_tls_alloc [function] [call site] 00634
8 SIMPLE_MODEL256_init [function] [call site] 00635
8 RC_SetInput [function] [call site] 00636
8 RC_StartDecode [function] [call site] 00637
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00638
8 RC_FinishDecode [function] [call site] 00639
8 htscodecs_tls_free [function] [call site] 00640
8 htscodecs_tls_free [function] [call site] 00641
7 arith_uncompress_O0 [function] [call site] 00642
8 SIMPLE_MODEL256_init [function] [call site] 00643
8 RC_SetInput [function] [call site] 00644
8 RC_StartDecode [function] [call site] 00645
8 SIMPLE_MODEL256_decodeSymbol [function] [call site] 00646
8 RC_FinishDecode [function] [call site] 00647
7 hts_unpack [function] [call site] 00648
5 tok3_decode_names [function] [call site] 00649
6 create_context [function] [call site] 00650
7 fprintf [call site] 00651
7 htscodecs_tls_alloc [function] [call site] 00652
6 uncompressed_size [function] [call site] 00653
7 var_get_u32 [function] [call site] 00654
7 var_get_u32 [function] [call site] 00655
6 uncompress [function] [call site] 00656
7 var_get_u32 [function] [call site] 00657
7 arith_decode [function] [call site] 00658
8 var_get_u32 [function] [call site] 00659
8 arith_uncompress_to [function] [call site] 00660
7 rans_decode [function] [call site] 00661
8 var_get_u32 [function] [call site] 00662
8 rans_uncompress_to_4x16 [function] [call site] 00663
6 decode_name [function] [call site] 00664
7 decode_token_type [function] [call site] 00665
7 decode_token_int [function] [call site] 00666
7 strlen [call site] 00667
7 strcpy [call site] 00668
7 strlen [call site] 00669
7 decode_token_type [function] [call site] 00670
7 decode_token_char [function] [call site] 00671
7 decode_token_alpha [function] [call site] 00672
7 decode_token_int1 [function] [call site] 00673
7 decode_token_int [function] [call site] 00674
7 append_uint32_fixed [function] [call site] 00675
7 decode_token_int1 [function] [call site] 00676
7 append_uint32_fixed [function] [call site] 00677
7 decode_token_int [function] [call site] 00678
7 append_uint32_var [function] [call site] 00679
7 decode_token_int1 [function] [call site] 00680
7 append_uint32_var [function] [call site] 00681
7 append_uint32_var [function] [call site] 00682
7 append_uint32_fixed [function] [call site] 00683
7 realloc [call site] 00684
6 free_context [function] [call site] 00685
7 pool_destroy [function] [call site] 00686
7 htscodecs_tls_free [function] [call site] 00687
6 free_context [function] [call site] 00688
4 cram_free_container [function] [call site] 00689
4 cram_free_block [function] [call site] 00690
4 int32_get_blk [function] [call site] 00691
4 cram_free_container [function] [call site] 00692
4 cram_free_block [function] [call site] 00693
4 cram_free_container [function] [call site] 00694
4 cram_free_block [function] [call site] 00695
4 cram_free_block [function] [call site] 00696
4 cram_read_block [function] [call site] 00697
4 cram_free_container [function] [call site] 00698
4 cram_free_block [function] [call site] 00699
4 cram_free_container [function] [call site] 00700
4 hread [function] [call site] 00701
4 cram_free_container [function] [call site] 00702
4 cram_free_container [function] [call site] 00703
4 sam_hdr_init [function] [call site] 00704
5 calloc [call site] 00705
4 sam_hdr_add_lines [function] [call site] 00706
5 sam_hdr_fill_hrecs [function] [call site] 00707
6 sam_hrecs_new [function] [call site] 00708
7 calloc [call site] 00709
7 kh_init_sam_hrecs_t [function] [call site] 00710
8 calloc [call site] 00711
7 kh_init_m_s2i [function] [call site] 00712
8 calloc [call site] 00713
7 kh_init_m_s2i [function] [call site] 00714
7 kh_init_m_s2i [function] [call site] 00715
7 pool_create [function] [call site] 00716
8 next_power_2 [function] [call site] 00717
7 pool_create [function] [call site] 00718
7 string_pool_create [function] [call site] 00719
7 sam_hrecs_init_type_order [function] [call site] 00720
8 calloc [call site] 00721
7 kh_destroy_sam_hrecs_t [function] [call site] 00722
7 pool_destroy [function] [call site] 00723
7 pool_destroy [function] [call site] 00724
7 string_pool_destroy [function] [call site] 00725
6 sam_hrecs_refs_from_targets_array [function] [call site] 00726
7 hts_log [function] [call site] 00727
7 realloc [call site] 00728
7 string_dup [function] [call site] 00729
8 strlen [call site] 00730
8 string_ndup [function] [call site] 00731
9 string_alloc [function] [call site] 00732
10 new_string_pool [function] [call site] 00733
11 realloc [call site] 00734
7 kh_get_s2i [function] [call site] 00735
8 __ac_FNV1a_hash_string [function] [call site] 00736
8 strcmp [call site] 00737
7 kh_put_m_s2i [function] [call site] 00738
8 kh_resize_m_s2i [function] [call site] 00739
9 realloc [call site] 00740
9 __ac_FNV1a_hash_string [function] [call site] 00741
8 strcmp [call site] 00742
7 hts_log [function] [call site] 00743
7 __errno_location [call site] 00744
7 strerror [call site] 00745
7 hts_log [function] [call site] 00746
7 kh_get_m_s2i [function] [call site] 00747
7 kh_del_m_s2i [function] [call site] 00748
6 sam_hrecs_free [function] [call site] 00749
7 kh_destroy_sam_hrecs_t [function] [call site] 00750
7 kh_destroy_m_s2i [function] [call site] 00751
7 kh_destroy_m_s2i [function] [call site] 00752
7 kh_destroy_m_s2i [function] [call site] 00753
7 pool_destroy [function] [call site] 00754
7 pool_destroy [function] [call site] 00755
7 string_pool_destroy [function] [call site] 00756
6 sam_hrecs_parse_lines [function] [call site] 00757
7 strlen [call site] 00758
7 sam_hrecs_error [function] [call site] 00759
8 hts_log [function] [call site] 00760
7 sam_hrecs_error [function] [call site] 00761
7 isalpha_c [function] [call site] 00762
8 __ctype_b_loc [call site] 00763
7 sam_hrecs_error [function] [call site] 00764
7 TYPEKEY [function] [call site] 00765
7 pool_alloc [function] [call site] 00766
8 new_pool [function] [call site] 00767
9 realloc [call site] 00768
7 kh_put_sam_hrecs_t [function] [call site] 00769
8 kh_resize_sam_hrecs_t [function] [call site] 00770
9 realloc [call site] 00771
7 sam_hrecs_global_list_add [function] [call site] 00772
8 TYPEKEY [function] [call site] 00773
7 __assert_fail [call site] 00774
7 TYPEKEY [function] [call site] 00775
7 sam_hrecs_error [function] [call site] 00776
7 pool_alloc [function] [call site] 00777
7 string_ndup [function] [call site] 00778
7 sam_hrecs_error [function] [call site] 00779
7 sam_hrecs_error [function] [call site] 00780
7 pool_alloc [function] [call site] 00781
7 string_ndup [function] [call site] 00782
7 sam_hrecs_update_hashes [function] [call site] 00783
8 TYPEKEY [function] [call site] 00784
8 __assert_fail [call site] 00785
8 __assert_fail [call site] 00786
8 strtoll [call site] 00787
8 __assert_fail [call site] 00788
8 hts_log [function] [call site] 00789
8 hts_log [function] [call site] 00790
8 hts_log [function] [call site] 00791
8 kh_get_m_s2i [function] [call site] 00792
8 snprintf [call site] 00793
8 sam_hrecs_update [function] [call site] 00794
9 sam_hrecs_vupdate [function] [call site] 00795
10 sam_hrecs_find_key [function] [call site] 00796
10 pool_alloc [function] [call site] 00797
10 strlen [call site] 00798
10 string_alloc [function] [call site] 00799
10 snprintf [call site] 00800
8 sam_hrecs_add_ref_altnames [function] [call site] 00801
9 kstrtok [function] [call site] 00802
10 strchr [call site] 00803
10 strlen [call site] 00804
9 string_ndup [function] [call site] 00805
9 kh_put_m_s2i [function] [call site] 00806
9 hts_log [function] [call site] 00807
8 strcmp [call site] 00808
8 sam_hrecs_add_ref_altnames [function] [call site] 00809
8 strcmp [call site] 00810
8 hts_log [function] [call site] 00811
8 hts_log [function] [call site] 00812
8 realloc [call site] 00813
8 kh_put_m_s2i [function] [call site] 00814
8 sam_hrecs_add_ref_altnames [function] [call site] 00815
8 TYPEKEY [function] [call site] 00816
8 sam_hrecs_find_key [function] [call site] 00817
8 hts_log [function] [call site] 00818
8 __assert_fail [call site] 00819
8 kh_get_m_s2i [function] [call site] 00820
8 __assert_fail [call site] 00821
8 hts_log [function] [call site] 00822
8 realloc [call site] 00823
8 kh_put_m_s2i [function] [call site] 00824
8 TYPEKEY [function] [call site] 00825
8 realloc [call site] 00826
8 __assert_fail [call site] 00827
8 hts_log [function] [call site] 00828
8 kh_get_m_s2i [function] [call site] 00829
8 kh_put_m_s2i [function] [call site] 00830
8 realloc [call site] 00831
6 sam_hrecs_free [function] [call site] 00832
6 add_stub_ref_sq_lines [function] [call site] 00833
7 snprintf [call site] 00834
7 sam_hrecs_add [function] [call site] 00835
8 sam_hrecs_vadd [function] [call site] 00836
9 TYPEKEY [function] [call site] 00837
9 strncmp [call site] 00838
9 sam_hrecs_find_type_id [function] [call site] 00839
10 kh_get_m_s2i [function] [call site] 00840
10 kh_get_m_s2i [function] [call site] 00841
10 kh_get_m_s2i [function] [call site] 00842
10 TYPEKEY [function] [call site] 00843
10 kh_get_sam_hrecs_t [function] [call site] 00844
9 sam_hrecs_vupdate [function] [call site] 00845
9 pool_alloc [function] [call site] 00846
9 kh_put_sam_hrecs_t [function] [call site] 00847
9 __assert_fail [call site] 00848
9 sam_hrecs_global_list_add [function] [call site] 00849
9 __assert_fail [call site] 00850
9 __assert_fail [call site] 00851
9 __assert_fail [call site] 00852
9 __assert_fail [call site] 00853
9 strncmp [call site] 00854
9 pool_alloc [function] [call site] 00855
9 strncmp [call site] 00856
9 strlen [call site] 00857
9 string_alloc [function] [call site] 00858
9 snprintf [call site] 00859
9 strlen [call site] 00860
9 string_ndup [function] [call site] 00861
9 strncmp [call site] 00862
9 pool_alloc [function] [call site] 00863
9 strncmp [call site] 00864
9 strlen [call site] 00865
9 string_alloc [function] [call site] 00866
9 snprintf [call site] 00867
9 strlen [call site] 00868
9 string_ndup [function] [call site] 00869
9 TYPEKEY [function] [call site] 00870
9 sam_hrecs_update_hashes [function] [call site] 00871
9 strncmp [call site] 00872
7 hts_log [function] [call site] 00873
6 sam_hrecs_free [function] [call site] 00874
6 rebuild_target_arrays [function] [call site] 00875
7 sam_hdr_update_target_arrays [function] [call site] 00876
8 realloc [call site] 00877
8 realloc [call site] 00878
8 strcmp [call site] 00879
8 strdup [call site] 00880
8 kh_get_s2i [function] [call site] 00881
8 kh_del_s2i [function] [call site] 00882
8 kh_init_s2i [function] [call site] 00883
9 calloc [call site] 00884
8 kh_put_s2i [function] [call site] 00885
9 kh_resize_s2i [function] [call site] 00886
10 realloc [call site] 00887
8 kh_get_s2i [function] [call site] 00888
8 kh_del_s2i [function] [call site] 00889
5 sam_hrecs_parse_lines [function] [call site] 00890
5 rebuild_target_arrays [function] [call site] 00891
5 redact_header_text [function] [call site] 00892
6 __assert_fail [call site] 00893
4 sam_hdr_destroy [function] [call site] 00894
5 sam_hrecs_free [function] [call site] 00895
5 kh_destroy_s2i [function] [call site] 00896
3 cram_free_file_def [function] [call site] 00897
3 calloc [call site] 00898
3 strncpy [call site] 00899
3 cram_init_tables [function] [call site] 00900
3 strrchr [call site] 00901
3 strdup [call site] 00902
3 refs_create [function] [call site] 00903
4 calloc [call site] 00904
4 string_pool_create [function] [call site] 00905
4 kh_init_refs [function] [call site] 00906
5 calloc [call site] 00907
4 pthread_mutex_init [call site] 00908
4 refs_free [function] [call site] 00909
5 string_pool_destroy [function] [call site] 00910
5 ref_entry_free_seq [function] [call site] 00911
6 mfclose [function] [call site] 00912
7 mfflush [function] [call site] 00913
8 fwrite [call site] 00914
8 fflush [call site] 00915
8 fseek [call site] 00916
8 fwrite [call site] 00917
8 fflush [call site] 00918
8 ftell [call site] 00919
8 fileno [call site] 00920
8 ftell [call site] 00921
8 ftruncate [call site] 00922
7 munmap [call site] 00923
7 fclose [call site] 00924
7 mfdestroy [function] [call site] 00925
5 kh_destroy_refs [function] [call site] 00926
5 bgzf_close [function] [call site] 00927
6 bgzf_flush [function] [call site] 00928
7 mt_queue [function] [call site] 00929
8 pthread_mutex_lock [call site] 00930
8 pool_alloc [function] [call site] 00931
8 pthread_mutex_unlock [call site] 00932
8 hts_tpool_dispatch3 [function] [call site] 00933
9 pthread_mutex_lock [call site] 00934
9 pthread_mutex_unlock [call site] 00935
9 __errno_location [call site] 00936
9 pthread_mutex_unlock [call site] 00937
9 pthread_cond_wait [call site] 00938
9 pthread_mutex_unlock [call site] 00939
9 wake_next_worker [function] [call site] 00940
10 pthread_mutex_lock [call site] 00941
10 __assert_fail [call site] 00942
10 __assert_fail [call site] 00943
10 pthread_cond_signal [call site] 00944
10 pthread_mutex_unlock [call site] 00945
9 pthread_mutex_unlock [call site] 00946
8 bgzf_encode_level0_func [function] [call site] 00947
9 u16_to_le [function] [call site] 00948
9 u16_to_le [function] [call site] 00949
9 u16_to_le [function] [call site] 00950
9 hts_crc32 [function] [call site] 00951
10 crc32 [call site] 00952
9 u32_to_le [function] [call site] 00953
9 u32_to_le [function] [call site] 00954
8 job_cleanup [function] [call site] 00955
9 pthread_mutex_lock [call site] 00956
9 pool_free [function] [call site] 00957
9 pthread_mutex_unlock [call site] 00958
8 hts_tpool_dispatch3 [function] [call site] 00959
8 bgzf_encode_func [function] [call site] 00960
9 bgzf_compress [function] [call site] 00961
10 u16_to_le [function] [call site] 00962
10 u16_to_le [function] [call site] 00963
10 deflateInit2_ [call site] 00964
10 bgzf_zerr [function] [call site] 00965
10 hts_log [function] [call site] 00966
10 deflate [call site] 00967
10 deflateEnd [call site] 00968
10 bgzf_zerr [function] [call site] 00969
10 hts_log [function] [call site] 00970
10 deflateEnd [call site] 00971
10 deflateEnd [call site] 00972
10 bgzf_zerr [function] [call site] 00973
10 hts_log [function] [call site] 00974
10 packInt16 [function] [call site] 00975
10 crc32 [call site] 00976
10 packInt32 [function] [call site] 00977
10 packInt32 [function] [call site] 00978
8 job_cleanup [function] [call site] 00979
8 job_cleanup [function] [call site] 00980
8 pthread_mutex_lock [call site] 00981
8 pthread_mutex_unlock [call site] 00982
7 mt_flush_queue [function] [call site] 00983
8 pthread_mutex_lock [call site] 00984
8 hts_tpool_process_is_shutdown [function] [call site] 00985
9 pthread_mutex_lock [call site] 00986
9 pthread_mutex_unlock [call site] 00987
8 pthread_mutex_unlock [call site] 00988
8 hts_usleep [function] [call site] 00989
9 nanosleep [call site] 00990
8 pthread_mutex_lock [call site] 00991
8 pthread_mutex_unlock [call site] 00992
8 hts_tpool_process_flush [function] [call site] 00993
9 pthread_mutex_lock [call site] 00994
9 pthread_cond_signal [call site] 00995
9 pthread_cond_wait [call site] 00996
9 gettimeofday [call site] 00997
9 pthread_cond_timedwait [call site] 00998
9 gettimeofday [call site] 00999
9 pthread_cond_timedwait [call site] 01000
9 pthread_mutex_unlock [call site] 01001
7 pthread_mutex_lock [call site] 01002
7 pthread_mutex_unlock [call site] 01003
7 hflush [function] [call site] 01004
8 flush_buffer [function] [call site] 01005
8 __errno_location [call site] 01006
7 bgzf_index_add_block [function] [call site] 01007
8 realloc [call site] 01008
7 deflate_block [function] [call site] 01009
8 bgzf_compress [function] [call site] 01010
8 bgzf_gzip_compress [function] [call site] 01011
9 deflate [call site] 01012
9 bgzf_zerr [function] [call site] 01013
9 hts_log [function] [call site] 01014
9 hts_log [function] [call site] 01015
8 hts_log [function] [call site] 01016
7 bgzf_zerr [function] [call site] 01017
7 hts_log [function] [call site] 01018
7 hwrite [function] [call site] 01019
8 hfile_set_blksize [function] [call site] 01020
9 realloc [call site] 01021
8 hwrite2 [function] [call site] 01022
9 flush_buffer [function] [call site] 01023
9 __errno_location [call site] 01024
8 hwrite2 [function] [call site] 01025
7 hts_log [function] [call site] 01026
6 bgzf_close_mt [function] [call site] 01027
7 mt_destroy [function] [call site] 01028
8 pthread_mutex_lock [call site] 01029
8 pthread_cond_signal [call site] 01030
8 hts_tpool_wake_dispatch [function] [call site] 01031
9 pthread_mutex_lock [call site] 01032
9 pthread_cond_signal [call site] 01033
9 pthread_mutex_unlock [call site] 01034
8 pthread_mutex_unlock [call site] 01035
8 hts_tpool_process_is_shutdown [function] [call site] 01036
8 hts_tpool_process_destroy [function] [call site] 01037
9 pthread_mutex_lock [call site] 01038
9 pthread_mutex_unlock [call site] 01039
9 hts_tpool_process_reset [function] [call site] 01040
10 pthread_mutex_lock [call site] 01041
10 pthread_mutex_unlock [call site] 01042
10 hts_tpool_delete_result [function] [call site] 01043
10 hts_tpool_process_flush [function] [call site] 01044
10 pthread_mutex_lock [call site] 01045
10 pthread_cond_signal [call site] 01046
10 pthread_mutex_unlock [call site] 01047
10 hts_tpool_delete_result [function] [call site] 01048
9 pthread_mutex_lock [call site] 01049
9 hts_tpool_process_detach_locked [function] [call site] 01050
9 hts_tpool_process_shutdown_locked [function] [call site] 01051
10 pthread_cond_broadcast [call site] 01052
10 pthread_cond_broadcast [call site] 01053
10 pthread_cond_broadcast [call site] 01054
10 pthread_cond_broadcast [call site] 01055
9 pthread_mutex_unlock [call site] 01056
9 pthread_cond_destroy [call site] 01057
9 pthread_cond_destroy [call site] 01058
9 pthread_cond_destroy [call site] 01059
9 pthread_cond_destroy [call site] 01060
9 pthread_mutex_unlock [call site] 01061
8 pthread_join [call site] 01062
8 pthread_mutex_destroy [call site] 01063
8 pthread_mutex_destroy [call site] 01064
8 pthread_mutex_destroy [call site] 01065
8 pthread_cond_destroy [call site] 01066
8 pool_free [function] [call site] 01067
8 hts_tpool_destroy [function] [call site] 01068
9 pthread_mutex_lock [call site] 01069
9 pthread_cond_signal [call site] 01070
9 pthread_mutex_unlock [call site] 01071
9 pthread_join [call site] 01072
9 pthread_mutex_destroy [call site] 01073
9 pthread_cond_destroy [call site] 01074
8 pool_destroy [function] [call site] 01075
8 fflush [call site] 01076
6 deflate_block [function] [call site] 01077
6 bgzf_zerr [function] [call site] 01078
6 hts_log [function] [call site] 01079
6 bgzf_close_mt [function] [call site] 01080
6 hwrite [function] [call site] 01081
6 hflush [function] [call site] 01082
6 hts_log [function] [call site] 01083
6 bgzf_close_mt [function] [call site] 01084
6 inflateEnd [call site] 01085
6 deflateEnd [call site] 01086
6 bgzf_zerr [function] [call site] 01087
6 hts_log [function] [call site] 01088
6 hclose [function] [call site] 01089
7 writebuffer_is_nonempty [function] [call site] 01090
7 hflush [function] [call site] 01091
7 __errno_location [call site] 01092
7 hfile_destroy [function] [call site] 01093
7 __errno_location [call site] 01094
6 bgzf_index_destroy [function] [call site] 01095
6 free_cache [function] [call site] 01096
7 kh_destroy_cache [function] [call site] 01097
5 pthread_mutex_destroy [call site] 01098
3 pthread_mutex_init [call site] 01099
3 pthread_mutex_init [call site] 01100
3 pthread_mutex_init [call site] 01101
3 pthread_mutex_init [call site] 01102
3 cram_new_metrics [function] [call site] 01103
4 calloc [call site] 01104
3 kh_init_m_metrics [function] [call site] 01105
4 calloc [call site] 01106
3 refs_from_header [function] [call site] 01107
4 sam_hdr_fill_hrecs [function] [call site] 01108
4 realloc [call site] 01109
4 kh_get_refs [function] [call site] 01110
5 __ac_FNV1a_hash_string [function] [call site] 01111
5 strcmp [call site] 01112
4 calloc [call site] 01113
4 string_dup [function] [call site] 01114
4 sam_hrecs_find_type_id [function] [call site] 01115
4 sam_hrecs_find_key [function] [call site] 01116
4 string_dup [function] [call site] 01117
4 sam_hrecs_find_key [function] [call site] 01118
4 strtoll [call site] 01119
4 kh_put_refs [function] [call site] 01120
5 kh_resize_refs [function] [call site] 01121
6 realloc [call site] 01122
2 cram_set_option [function] [call site] 01123
3 cram_set_voption [function] [call site] 01124
4 __errno_location [call site] 01125
4 strdup [call site] 01126
4 refs_free [function] [call site] 01127
4 cram_seek_to_refpos [function] [call site] 01128
5 cram_index_query [function] [call site] 01129
5 cram_seek [function] [call site] 01130
6 cram_drain_rqueue [function] [call site] 01131
7 hts_tpool_process_empty [function] [call site] 01132
8 pthread_mutex_lock [call site] 01133
8 pthread_mutex_unlock [call site] 01134
7 hts_tpool_next_result_wait [function] [call site] 01135
8 pthread_mutex_lock [call site] 01136
8 hts_tpool_next_result_locked [function] [call site] 01137
9 pthread_cond_signal [call site] 01138
9 wake_next_worker [function] [call site] 01139
8 gettimeofday [call site] 01140
8 pthread_mutex_unlock [call site] 01141
8 hts_tpool_process_destroy [function] [call site] 01142
8 pthread_cond_timedwait [call site] 01143
8 pthread_mutex_unlock [call site] 01144
7 hts_tpool_result_data [function] [call site] 01145
7 cram_free_container [function] [call site] 01146
7 cram_free_slice [function] [call site] 01147
7 hts_tpool_delete_result [function] [call site] 01148
7 cram_free_container [function] [call site] 01149
7 cram_free_slice [function] [call site] 01150
7 cram_free_container [function] [call site] 01151
6 hseek [function] [call site] 01152
5 pthread_mutex_lock [call site] 01153
5 pthread_mutex_unlock [call site] 01154
5 cram_free_container [function] [call site] 01155
5 cram_free_container [function] [call site] 01156
5 pthread_mutex_lock [call site] 01157
5 pthread_mutex_unlock [call site] 01158
4 pthread_mutex_lock [call site] 01159
4 pthread_mutex_unlock [call site] 01160
4 pthread_mutex_lock [call site] 01161
4 pthread_mutex_unlock [call site] 01162
4 cram_load_reference [function] [call site] 01163
5 refs_load_fai [function] [call site] 01164
6 strlen [call site] 01165
6 refs_create [function] [call site] 01166
6 bgzf_close [function] [call site] 01167
6 strstr [call site] 01168
6 string_ndup [function] [call site] 01169
6 snprintf [call site] 01170
6 strcmp [call site] 01171
6 string_ndup [function] [call site] 01172
6 snprintf [call site] 01173
6 string_dup [function] [call site] 01174
6 snprintf [call site] 01175
6 bgzf_open_ref [function] [call site] 01176
7 strncmp [call site] 01177
7 hisremote [function] [call site] 01178
8 find_scheme_handler [function] [call site] 01179
7 snprintf [call site] 01180
7 access [call site] 01181
7 fai_build [function] [call site] 01182
8 fai_build3 [function] [call site] 01183
9 fai_build3_core [function] [call site] 01184
10 bgzf_open [function] [call site] 01185
11 strchr [call site] 01186
11 hopen [function] [call site] 01187
11 bgzf_read_init [function] [call site] 01188
11 hclose_abruptly [function] [call site] 01189
11 strchr [call site] 01190
11 hopen [function] [call site] 01191
11 bgzf_write_init [function] [call site] 01192
11 __errno_location [call site] 01193
11 ed_is_big [function] [call site] 01194
10 __errno_location [call site] 01195
10 strerror [call site] 01196
10 hts_log [function] [call site] 01197
10 bgzf_index_build_init [function] [call site] 01198
11 bgzf_index_destroy [function] [call site] 01199
11 calloc [call site] 01200
10 hts_log [function] [call site] 01201
10 fai_build_core [function] [call site] 01202
11 calloc [call site] 01203
11 kh_init_s [function] [call site] 01204
12 calloc [call site] 01205
11 bgzf_getc_ [function] [call site] 01206
12 bgzf_getc [function] [call site] 01207
13 bgzf_read_block [function] [call site] 01208
14 hts_tpool_next_result_wait [function] [call site] 01209
14 hts_tpool_result_data [function] [call site] 01210
14 mt_destroy [function] [call site] 01211
14 hts_tpool_delete_result [function] [call site] 01212
14 hts_log [function] [call site] 01213
14 hts_tpool_delete_result [function] [call site] 01214
14 hts_log [function] [call site] 01215
14 hts_tpool_delete_result [function] [call site] 01216
14 bgzf_index_add_block [function] [call site] 01217
14 pthread_mutex_lock [call site] 01218
14 pool_free [function] [call site] 01219
14 pthread_mutex_unlock [call site] 01220
14 hts_tpool_delete_result [function] [call site] 01221
14 bgzf_htell [function] [call site] 01222
15 pthread_mutex_lock [call site] 01223
15 pthread_mutex_unlock [call site] 01224
15 htell [function] [call site] 01225
14 hread [function] [call site] 01226
14 __errno_location [call site] 01227
14 strerror [call site] 01228
14 hts_log [function] [call site] 01229
14 inflate_gzip_block [function] [call site] 01230
15 hread [function] [call site] 01231
15 inflate [call site] 01232
15 bgzf_zerr [function] [call site] 01233
15 hts_log [function] [call site] 01234
15 hpeek [function] [call site] 01235
15 inflateReset [call site] 01236
15 bgzf_zerr [function] [call site] 01237
15 hts_log [function] [call site] 01238
15 hts_log [function] [call site] 01239
14 hts_log [function] [call site] 01240
14 load_block_from_cache [function] [call site] 01241
15 kh_get_cache [function] [call site] 01242
15 hseek [function] [call site] 01243
15 hts_log [function] [call site] 01244
15 exit [call site] 01245
14 hread [function] [call site] 01246
14 hts_log [function] [call site] 01247
14 check_header [function] [call site] 01248
15 unpackInt16 [function] [call site] 01249
15 unpackInt16 [function] [call site] 01250
14 hts_log [function] [call site] 01251
14 hread [function] [call site] 01252
14 calloc [call site] 01253
14 inflateInit2_ [call site] 01254
14 bgzf_zerr [function] [call site] 01255
14 hts_log [function] [call site] 01256
14 inflate_gzip_block [function] [call site] 01257
14 hts_log [function] [call site] 01258
14 unpackInt16 [function] [call site] 01259
14 hts_log [function] [call site] 01260
14 hread [function] [call site] 01261
14 hts_log [function] [call site] 01262
14 inflate_block [function] [call site] 01263
15 le_to_u32 [function] [call site] 01264
15 bgzf_uncompress [function] [call site] 01265
16 inflateInit2_ [call site] 01266
16 bgzf_zerr [function] [call site] 01267
16 hts_log [function] [call site] 01268
16 inflate [call site] 01269
16 bgzf_zerr [function] [call site] 01270
16 hts_log [function] [call site] 01271
16 inflateEnd [call site] 01272
16 bgzf_zerr [function] [call site] 01273
16 hts_log [function] [call site] 01274
16 inflateEnd [call site] 01275
16 bgzf_zerr [function] [call site] 01276
16 hts_log [function] [call site] 01277
16 crc32 [call site] 01278
16 hts_log [function] [call site] 01279
14 bgzf_zerr [function] [call site] 01280
14 hts_log [function] [call site] 01281
14 bgzf_htell [function] [call site] 01282
14 bgzf_index_add_block [function] [call site] 01283
14 cache_block [function] [call site] 01284
15 kh_del_cache [function] [call site] 01285
15 kh_put_cache [function] [call site] 01286
16 kh_resize_cache [function] [call site] 01287
17 realloc [call site] 01288
13 bgzf_htell [function] [call site] 01289
11 hts_log [function] [call site] 01290
11 hts_log [function] [call site] 01291
11 bgzf_getc_ [function] [call site] 01292
11 hts_log [function] [call site] 01293
11 __ctype_b_loc [call site] 01294
11 hts_log [function] [call site] 01295
11 fai_insert_index [function] [call site] 01296
12 hts_log [function] [call site] 01297
12 strdup [call site] 01298
12 kh_put_s [function] [call site] 01299
13 kh_resize_s [function] [call site] 01300
14 realloc [call site] 01301
14 __ac_FNV1a_hash_string [function] [call site] 01302
13 strcmp [call site] 01303
12 realloc [call site] 01304
12 hts_log [function] [call site] 01305
11 __ctype_b_loc [call site] 01306
11 kputc [function] [call site] 01307
11 bgzf_getc_ [function] [call site] 01308
11 kputsn [function] [call site] 01309
11 hts_log [function] [call site] 01310
11 bgzf_getc_ [function] [call site] 01311
11 bgzf_utell [function] [call site] 01312
11 bgzf_getc_ [function] [call site] 01313
11 bgzf_utell [function] [call site] 01314
11 hts_log [function] [call site] 01315
11 isgraph_ [function] [call site] 01316
11 bgzf_getc_ [function] [call site] 01317
11 hts_log [function] [call site] 01318
11 bgzf_getc_ [function] [call site] 01319
11 bgzf_utell [function] [call site] 01320
11 hts_log [function] [call site] 01321
11 hts_log [function] [call site] 01322
11 isgraph_ [function] [call site] 01323
11 bgzf_getc_ [function] [call site] 01324
11 hts_log [function] [call site] 01325
11 hts_log [function] [call site] 01326
11 hts_log [function] [call site] 01327
11 fai_insert_index [function] [call site] 01328
11 hts_log [function] [call site] 01329
11 fai_destroy [function] [call site] 01330
12 kh_destroy_s [function] [call site] 01331
12 bgzf_close [function] [call site] 01332
10 hts_log [function] [call site] 01333
10 ksprintf [function] [call site] 01334
10 ksprintf [function] [call site] 01335
10 bgzf_index_dump [function] [call site] 01336
11 hts_log [function] [call site] 01337
11 __errno_location [call site] 01338
11 get_name_suffix [function] [call site] 01339
12 strlen [call site] 01340
12 snprintf [call site] 01341
11 hopen [function] [call site] 01342
11 bgzf_index_dump_hfile [function] [call site] 01343
12 hts_log [function] [call site] 01344
12 __errno_location [call site] 01345
12 bgzf_flush [function] [call site] 01346
12 hwrite_uint64 [function] [call site] 01347
13 ed_is_big [function] [call site] 01348
13 ed_swap_8 [function] [call site] 01349
13 hwrite [function] [call site] 01350
12 hwrite_uint64 [function] [call site] 01351
12 hwrite_uint64 [function] [call site] 01352
12 __errno_location [call site] 01353
12 strerror [call site] 01354
12 hts_log [function] [call site] 01355
11 hclose [function] [call site] 01356
11 __errno_location [call site] 01357
11 strerror [call site] 01358
11 hts_log [function] [call site] 01359
11 hclose_abruptly [function] [call site] 01360
10 hts_log [function] [call site] 01361
10 bgzf_close [function] [call site] 01362
10 __errno_location [call site] 01363
10 strerror [call site] 01364
10 hts_log [function] [call site] 01365
10 hopen [function] [call site] 01366
10 __errno_location [call site] 01367
10 strerror [call site] 01368
10 hts_log [function] [call site] 01369
10 fai_save [function] [call site] 01370
11 kh_get_s [function] [call site] 01371
11 __assert_fail [call site] 01372
11 snprintf [call site] 01373
11 snprintf [call site] 01374
11 hputs [function] [call site] 01375
12 strlen [call site] 01376
12 hputs2 [function] [call site] 01377
13 hwrite2 [function] [call site] 01378
11 hputs [function] [call site] 01379
10 __errno_location [call site] 01380
10 strerror [call site] 01381
10 hts_log [function] [call site] 01382
10 hclose [function] [call site] 01383
10 __errno_location [call site] 01384
10 strerror [call site] 01385
10 hts_log [function] [call site] 01386
10 fai_destroy [function] [call site] 01387
10 __errno_location [call site] 01388
10 bgzf_close [function] [call site] 01389
10 fai_destroy [function] [call site] 01390
10 __errno_location [call site] 01391
7 bgzf_open [function] [call site] 01392
7 perror [call site] 01393
7 bgzf_index_load [function] [call site] 01394
8 get_name_suffix [function] [call site] 01395
8 hopen [function] [call site] 01396
8 bgzf_index_load_hfile [function] [call site] 01397
9 calloc [call site] 01398
9 hread_uint64 [function] [call site] 01399
10 hread [function] [call site] 01400
10 ed_is_big [function] [call site] 01401
10 ed_swap_8p [function] [call site] 01402
9 hread_uint64 [function] [call site] 01403
9 hread_uint64 [function] [call site] 01404
9 __errno_location [call site] 01405
9 strerror [call site] 01406
9 hts_log [function] [call site] 01407
8 hclose [function] [call site] 01408
8 __errno_location [call site] 01409
8 strerror [call site] 01410
8 hts_log [function] [call site] 01411
8 hclose_abruptly [function] [call site] 01412
7 hts_log [function] [call site] 01413
7 bgzf_close [function] [call site] 01414
6 hts_log [function] [call site] 01415
6 hopen [function] [call site] 01416
6 hts_log [function] [call site] 01417
6 perror [call site] 01418
6 hgets [function] [call site] 01419
7 __errno_location [call site] 01420
7 hgetln [function] [call site] 01421
8 hgetdelim [function] [call site] 01422
9 __errno_location [call site] 01423
9 writebuffer_is_nonempty [function] [call site] 01424
9 __errno_location [call site] 01425
9 memchr [call site] 01426
9 refill_buffer [function] [call site] 01427
6 isspace_c [function] [call site] 01428
6 string_dup [function] [call site] 01429
6 isspace_c [function] [call site] 01430
6 strtoll [call site] 01431
6 isspace_c [function] [call site] 01432
6 strtoll [call site] 01433
6 isspace_c [function] [call site] 01434
6 strtol [call site] 01435
6 isspace_c [function] [call site] 01436
6 strtol [call site] 01437
6 kh_put_refs [function] [call site] 01438
6 realloc [call site] 01439
6 hclose [function] [call site] 01440
6 hclose_abruptly [function] [call site] 01441
6 refs_free [function] [call site] 01442
5 sanitise_SQ_lines [function] [call site] 01443
6 kh_get_refs [function] [call site] 01444
6 strcmp [call site] 01445
6 __assert_fail [call site] 01446
6 hts_log [function] [call site] 01447
5 refs_free [function] [call site] 01448
5 refs_create [function] [call site] 01449
5 refs_from_header [function] [call site] 01450
5 refs2id [function] [call site] 01451
6 calloc [call site] 01452
6 kh_get_refs [function] [call site] 01453
6 hts_log [function] [call site] 01454
4 __isoc99_sscanf [call site] 01455
4 hts_log [function] [call site] 01456
4 hts_log [function] [call site] 01457
4 __errno_location [call site] 01458
4 hts_log [function] [call site] 01459
4 cram_init_tables [function] [call site] 01460
4 hts_tpool_init [function] [call site] 01461
5 pthread_mutexattr_init [call site] 01462
5 pthread_mutexattr_settype [call site] 01463
5 pthread_mutex_init [call site] 01464
5 pthread_mutexattr_destroy [call site] 01465
5 pthread_mutex_lock [call site] 01466
5 pthread_attr_init [call site] 01467
5 pthread_attr_getstacksize [call site] 01468
5 pthread_attr_setstacksize [call site] 01469
5 pthread_cond_init [call site] 01470
5 pthread_create [call site] 01471
5 tpool_worker [function] [call site] 01472
6 pthread_mutex_lock [call site] 01473
6 __assert_fail [call site] 01474
6 pthread_cond_wait [call site] 01475
6 __assert_fail [call site] 01476
6 pthread_cond_broadcast [call site] 01477
6 pthread_cond_signal [call site] 01478
6 pthread_mutex_unlock [call site] 01479
6 hts_tpool_add_result [function] [call site] 01480
7 pthread_mutex_lock [call site] 01481
7 pthread_cond_signal [call site] 01482
7 pthread_mutex_unlock [call site] 01483
7 pthread_mutex_unlock [call site] 01484
7 hts_tpool_process_shutdown [function] [call site] 01485
8 pthread_mutex_lock [call site] 01486
8 hts_tpool_process_shutdown_locked [function] [call site] 01487
8 pthread_mutex_unlock [call site] 01488
7 __assert_fail [call site] 01489
7 pthread_cond_broadcast [call site] 01490
7 pthread_mutex_unlock [call site] 01491
6 pthread_mutex_lock [call site] 01492
6 hts_tpool_process_destroy [function] [call site] 01493
6 pthread_mutex_unlock [call site] 01494
6 pthread_mutex_lock [call site] 01495
6 hts_tpool_process_shutdown_locked [function] [call site] 01496
6 pthread_mutex_unlock [call site] 01497
5 pthread_mutex_unlock [call site] 01498
5 pthread_attr_destroy [call site] 01499
5 __errno_location [call site] 01500
5 __errno_location [call site] 01501
5 strerror [call site] 01502
5 hts_log [function] [call site] 01503
5 pthread_mutex_unlock [call site] 01504
5 pthread_join [call site] 01505
5 pthread_cond_destroy [call site] 01506
5 pthread_mutex_destroy [call site] 01507
5 pthread_attr_destroy [call site] 01508
5 __errno_location [call site] 01509
4 hts_tpool_process_init [function] [call site] 01510
5 pthread_cond_init [call site] 01511
5 pthread_cond_init [call site] 01512
5 pthread_cond_init [call site] 01513
5 pthread_cond_init [call site] 01514
5 hts_tpool_process_attach [function] [call site] 01515
6 pthread_mutex_lock [call site] 01516
6 __assert_fail [call site] 01517
6 pthread_mutex_unlock [call site] 01518
4 hts_tpool_size [function] [call site] 01519
4 hts_tpool_process_init [function] [call site] 01520
4 hts_log [function] [call site] 01521
4 __errno_location [call site] 01522
2 bgzf_hopen [function] [call site] 01523
2 __errno_location [call site] 01524
2 hts_process_opts [function] [call site] 01525
3 hts_parse_opt_list [function] [call site] 01526
4 strncpy [call site] 01527
4 hts_opt_add [function] [call site] 01528
5 strdup [call site] 01529
5 strchr [call site] 01530
5 strcmp [call site] 01531
5 strcmp [call site] 01532
5 atoi [call site] 01533
5 strcmp [call site] 01534
5 strcmp [call site] 01535
5 atoi [call site] 01536
5 strcmp [call site] 01537
5 strcmp [call site] 01538
5 atoi [call site] 01539
5 strcmp [call site] 01540
5 strcmp [call site] 01541
5 atoi [call site] 01542
5 strcmp [call site] 01543
5 strcmp [call site] 01544
5 atoi [call site] 01545
5 strcmp [call site] 01546
5 strcmp [call site] 01547
5 atoi [call site] 01548
5 strcmp [call site] 01549
5 strcmp [call site] 01550
5 atoi [call site] 01551
5 strcmp [call site] 01552
5 strcmp [call site] 01553
5 atoi [call site] 01554
5 strcmp [call site] 01555
5 strcmp [call site] 01556
5 atoi [call site] 01557
5 strcmp [call site] 01558
5 strcmp [call site] 01559
5 atoi [call site] 01560
5 strcmp [call site] 01561
5 strcmp [call site] 01562
5 atoi [call site] 01563
5 strcmp [call site] 01564
5 strcmp [call site] 01565
5 atoi [call site] 01566
5 strcmp [call site] 01567
5 strcmp [call site] 01568
5 atoi [call site] 01569
5 strcmp [call site] 01570
5 strcmp [call site] 01571
5 atoi [call site] 01572
5 strcmp [call site] 01573
5 strcmp [call site] 01574
5 atoi [call site] 01575
5 strcmp [call site] 01576
5 strcmp [call site] 01577
5 strcmp [call site] 01578
5 strcmp [call site] 01579
5 strcmp [call site] 01580
5 strcmp [call site] 01581
5 strcmp [call site] 01582
5 strcmp [call site] 01583
5 strcmp [call site] 01584
5 strcmp [call site] 01585
5 strcmp [call site] 01586
5 strcmp [call site] 01587
5 strcmp [call site] 01588
5 strcmp [call site] 01589
5 atoi [call site] 01590
5 strcmp [call site] 01591
5 strcmp [call site] 01592
5 atoi [call site] 01593
5 strcmp [call site] 01594
5 strcmp [call site] 01595
5 strtol [call site] 01596
5 hts_log [function] [call site] 01597
5 strcmp [call site] 01598
5 strcmp [call site] 01599
5 strtol [call site] 01600
5 strcmp [call site] 01601
5 strcmp [call site] 01602
5 strtol [call site] 01603
5 strcmp [call site] 01604
5 strcmp [call site] 01605
5 strcmp [call site] 01606
5 strcmp [call site] 01607
5 atoi [call site] 01608
5 strcmp [call site] 01609
5 strcmp [call site] 01610
5 atoi [call site] 01611
5 strcmp [call site] 01612
5 strcmp [call site] 01613
5 strtol [call site] 01614
5 strcmp [call site] 01615
5 strcmp [call site] 01616
5 strtol [call site] 01617
5 strcmp [call site] 01618
5 strcmp [call site] 01619
5 strcmp [call site] 01620
5 strcmp [call site] 01621
5 strcmp [call site] 01622
5 strcmp [call site] 01623
5 strcmp [call site] 01624
5 strcmp [call site] 01625
5 strcmp [call site] 01626
5 strcmp [call site] 01627
5 strcmp [call site] 01628
5 strcmp [call site] 01629
5 hts_log [function] [call site] 01630
3 hts_opt_apply [function] [call site] 01631
4 strdup [call site] 01632
4 hts_set_opt [function] [call site] 01633
5 hts_set_threads [function] [call site] 01634
6 sam_set_threads [function] [call site] 01635
7 hts_tpool_init [function] [call site] 01636
7 sam_set_thread_pool [function] [call site] 01637
8 sam_state_create [function] [call site] 01638
9 calloc [call site] 01639
8 pthread_mutex_init [call site] 01640
8 pthread_mutex_init [call site] 01641
8 pthread_cond_init [call site] 01642
8 hts_tpool_size [function] [call site] 01643
8 hts_tpool_process_init [function] [call site] 01644
8 sam_state_destroy [function] [call site] 01645
9 pthread_mutex_lock [call site] 01646
9 pthread_cond_signal [call site] 01647
9 hts_tpool_wake_dispatch [function] [call site] 01648
9 hts_tpool_wake_dispatch [function] [call site] 01649
9 pthread_mutex_unlock [call site] 01650
9 hts_usleep [function] [call site] 01651
9 pthread_mutex_lock [call site] 01652
9 pthread_mutex_unlock [call site] 01653
9 hts_tpool_dispatch [function] [call site] 01654
10 hts_tpool_dispatch3 [function] [call site] 01655
9 sam_format_worker [function] [call site] 01656
10 pthread_mutex_lock [call site] 01657
10 pthread_mutex_unlock [call site] 01658
10 sam_state_err [function] [call site] 01659
11 pthread_mutex_lock [call site] 01660
11 pthread_mutex_unlock [call site] 01661
10 sam_format1_append [function] [call site] 01662
11 kputsn_ [function] [call site] 01663
12 __errno_location [call site] 01664
12 ks_resize [function] [call site] 01665
11 kputc_ [function] [call site] 01666
12 ks_resize [function] [call site] 01667
11 kputw [function] [call site] 01668
12 ks_resize [function] [call site] 01669
12 kputuw [function] [call site] 01670
13 ks_resize [function] [call site] 01671
13 ks_resize [function] [call site] 01672
11 kputc_ [function] [call site] 01673
11 kputs [function] [call site] 01674
11 kputc_ [function] [call site] 01675
11 kputsn_ [function] [call site] 01676
11 kputll [function] [call site] 01677
12 ks_resize [function] [call site] 01678
12 kputuw [function] [call site] 01679
11 kputc_ [function] [call site] 01680
11 kputw [function] [call site] 01681
11 kputc_ [function] [call site] 01682
11 kputw [function] [call site] 01683
11 kputc_ [function] [call site] 01684
11 kputc_ [function] [call site] 01685
11 kputc_ [function] [call site] 01686
11 kputsn_ [function] [call site] 01687
11 kputsn_ [function] [call site] 01688
11 kputs [function] [call site] 01689
11 kputc_ [function] [call site] 01690
11 kputll [function] [call site] 01691
11 kputc_ [function] [call site] 01692
11 kputll [function] [call site] 01693
11 kputc_ [function] [call site] 01694
11 ks_resize [function] [call site] 01695
11 nibble2base [function] [call site] 01696
11 add33 [function] [call site] 01697
11 kputsn_ [function] [call site] 01698
11 kputc_ [function] [call site] 01699
11 sam_format_aux1 [function] [call site] 01700
12 kputsn_ [function] [call site] 01701
12 kputc_ [function] [call site] 01702
12 kputsn_ [function] [call site] 01703
12 kputw [function] [call site] 01704
12 kputsn_ [function] [call site] 01705
12 kputw [function] [call site] 01706
12 kputsn_ [function] [call site] 01707
12 le_to_u16 [function] [call site] 01708
12 kputuw [function] [call site] 01709
12 kputsn_ [function] [call site] 01710
12 le_to_i16 [function] [call site] 01711
13 le_to_u16 [function] [call site] 01712
12 kputw [function] [call site] 01713
12 kputsn_ [function] [call site] 01714
12 le_to_u32 [function] [call site] 01715
12 kputuw [function] [call site] 01716
12 kputsn_ [function] [call site] 01717
12 le_to_i32 [function] [call site] 01718
13 le_to_u32 [function] [call site] 01719
12 kputw [function] [call site] 01720
12 kputsn_ [function] [call site] 01721
12 kputc_ [function] [call site] 01722
12 le_to_float [function] [call site] 01723
13 le_to_u32 [function] [call site] 01724
12 ksprintf [function] [call site] 01725
12 le_to_double [function] [call site] 01726
13 le_to_u64 [function] [call site] 01727
12 ksprintf [function] [call site] 01728
12 kputc_ [function] [call site] 01729
12 kputc_ [function] [call site] 01730
12 kputc_ [function] [call site] 01731
12 kputsn [function] [call site] 01732
12 le_to_u32 [function] [call site] 01733
12 kputsn_ [function] [call site] 01734
12 kputc [function] [call site] 01735
12 ks_expand [function] [call site] 01736
13 __errno_location [call site] 01737
13 ks_resize [function] [call site] 01738
12 kputw [function] [call site] 01739
12 ks_expand [function] [call site] 01740
12 kputuw [function] [call site] 01741
12 ks_expand [function] [call site] 01742
12 le_to_i16 [function] [call site] 01743
12 kputw [function] [call site] 01744
12 ks_expand [function] [call site] 01745
12 le_to_u16 [function] [call site] 01746
12 kputuw [function] [call site] 01747
12 ks_expand [function] [call site] 01748
12 le_to_i32 [function] [call site] 01749
12 kputw [function] [call site] 01750
12 ks_expand [function] [call site] 01751
12 le_to_u32 [function] [call site] 01752
12 kputuw [function] [call site] 01753
12 ks_expand [function] [call site] 01754
12 le_to_float [function] [call site] 01755
12 kputd [function] [call site] 01756
12 __errno_location [call site] 01757
12 hts_log [function] [call site] 01758
12 __errno_location [call site] 01759
11 kputsn [function] [call site] 01760
11 hts_log [function] [call site] 01761
11 __errno_location [call site] 01762
11 hts_log [function] [call site] 01763
11 __errno_location [call site] 01764
10 __errno_location [call site] 01765
10 sam_state_err [function] [call site] 01766
10 kputc [function] [call site] 01767
10 pthread_mutex_lock [call site] 01768
10 pthread_mutex_unlock [call site] 01769
9 hts_tpool_process_flush [function] [call site] 01770
9 pthread_mutex_lock [call site] 01771
9 pthread_mutex_unlock [call site] 01772
9 hts_tpool_process_empty [function] [call site] 01773
9 hts_usleep [function] [call site] 01774
9 pthread_mutex_lock [call site] 01775
9 hts_tpool_process_is_shutdown [function] [call site] 01776
9 pthread_mutex_unlock [call site] 01777
9 hts_tpool_process_shutdown [function] [call site] 01778
9 pthread_join [call site] 01779
9 hts_tpool_process_destroy [function] [call site] 01780
9 hts_tpool_destroy [function] [call site] 01781
9 pthread_mutex_destroy [call site] 01782
9 pthread_mutex_destroy [call site] 01783
9 pthread_cond_destroy [call site] 01784
9 sam_free_sp_bams [function] [call site] 01785
9 sam_free_sp_bams [function] [call site] 01786
9 bam_hdr_destroy [function] [call site] 01787
10 sam_hdr_destroy [function] [call site] 01788
8 bgzf_thread_pool [function] [call site] 01789
9 calloc [call site] 01790
9 hts_tpool_size [function] [call site] 01791
9 hts_tpool_process_init [function] [call site] 01792
9 hts_tpool_process_ref_incr [function] [call site] 01793
10 pthread_mutex_lock [call site] 01794
10 pthread_mutex_unlock [call site] 01795
9 pool_create [function] [call site] 01796
9 pthread_mutex_init [call site] 01797
9 pthread_mutex_init [call site] 01798
9 pthread_mutex_init [call site] 01799
9 pthread_cond_init [call site] 01800
9 pthread_create [call site] 01801
6 hts_get_bgzfp [function] [call site] 01802
6 bgzf_mt [function] [call site] 01803
7 hts_tpool_init [function] [call site] 01804
7 bgzf_thread_pool [function] [call site] 01805
7 hts_tpool_destroy [function] [call site] 01806
6 hts_set_opt [function] [call site] 01807
7 hts_hfile [function] [call site] 01808
8 bgzf_hfile [function] [call site] 01809
8 cram_hfile [function] [call site] 01810
8 bgzf_hfile [function] [call site] 01811
7 hfile_set_blksize [function] [call site] 01812
7 hts_log [function] [call site] 01813
7 hts_log [function] [call site] 01814
7 hts_set_thread_pool [function] [call site] 01815
8 sam_set_thread_pool [function] [call site] 01816
8 hts_get_bgzfp [function] [call site] 01817
8 bgzf_thread_pool [function] [call site] 01818
8 hts_set_opt [function] [call site] 01819
9 hts_set_cache_size [function] [call site] 01820
10 hts_get_bgzfp [function] [call site] 01821
10 bgzf_set_cache_size [function] [call site] 01822
9 fastq_state_set [function] [call site] 01823
10 fastq_state_init [function] [call site] 01824
11 calloc [call site] 01825
11 strcpy [call site] 01826
10 strcmp [call site] 01827
10 kh_init_tag [function] [call site] 01828
11 calloc [call site] 01829
10 strlen [call site] 01830
10 hts_log [function] [call site] 01831
10 kh_put_tag [function] [call site] 01832
11 kh_resize_tag [function] [call site] 01833
12 realloc [call site] 01834
10 strncpy [call site] 01835
9 fastq_state_set [function] [call site] 01836
9 fastq_state_set [function] [call site] 01837
9 cram_set_option [function] [call site] 01838
9 hts_set_filter_expression [function] [call site] 01839
10 hts_filter_free [function] [call site] 01840
11 regfree [call site] 01841
10 hts_filter_init [function] [call site] 01842
11 calloc [call site] 01843
11 strlen [call site] 01844
11 strcpy [call site] 01845
9 cram_set_voption [function] [call site] 01846
4 hts_set_opt [function] [call site] 01847
3 hts_opt_free [function] [call site] 01848
3 hts_opt_free [function] [call site] 01849
2 hclose_abruptly [function] [call site] 01850
2 hts_log [function] [call site] 01851
2 hclose_abruptly [function] [call site] 01852
1 hclose [function] [call site] 01853
1 abort [call site] 01854
1 hts_close [function] [call site] 01855
2 bgzf_close [function] [call site] 01856
2 cram_eof [function] [call site] 01857
2 hts_log [function] [call site] 01858
2 cram_close [function] [call site] 01859
3 cram_update_curr_slice [function] [call site] 01860
3 cram_flush_container_mt [function] [call site] 01861
4 pthread_mutex_lock [call site] 01862
4 reset_metrics [function] [call site] 01863
5 pthread_mutex_unlock [call site] 01864
5 hts_tpool_process_flush [function] [call site] 01865
5 pthread_mutex_lock [call site] 01866
4 pthread_mutex_unlock [call site] 01867
4 cram_flush_container [function] [call site] 01868
5 cram_encode_container [function] [call site] 01869
6 pthread_mutex_lock [call site] 01870
6 hts_log [function] [call site] 01871
6 hts_log [function] [call site] 01872
6 pthread_mutex_unlock [call site] 01873
6 pthread_mutex_lock [call site] 01874
6 pthread_mutex_unlock [call site] 01875
6 cram_get_ref [function] [call site] 01876
7 pthread_mutex_lock [call site] 01877
7 hts_log [function] [call site] 01878
7 pthread_mutex_unlock [call site] 01879
7 hts_log [function] [call site] 01880
7 pthread_mutex_unlock [call site] 01881
7 hts_log [function] [call site] 01882
7 pthread_mutex_unlock [call site] 01883
7 pthread_mutex_lock [call site] 01884
7 hts_log [function] [call site] 01885
7 cram_populate_ref [function] [call site] 01886
8 getenv [call site] 01887
8 getenv [call site] 01888
8 hts_log [function] [call site] 01889
8 sam_hrecs_find_type_id [function] [call site] 01890
8 sam_hrecs_find_key [function] [call site] 01891
8 hts_log [function] [call site] 01892
8 expand_cache_path [function] [call site] 01893
9 strchr [call site] 01894
9 strncpy [call site] 01895
9 strlen [call site] 01896
9 strcpy [call site] 01897
9 strtol [call site] 01898
9 strlen [call site] 01899
9 strncpy [call site] 01900
9 strlen [call site] 01901
9 strcpy [call site] 01902
9 strlen [call site] 01903
9 strcpy [call site] 01904
8 stat [call site] 01905
8 stat [call site] 01906
8 bgzf_open [function] [call site] 01907
8 string_dup [function] [call site] 01908
8 bgzf_close [function] [call site] 01909
8 open_path_mfile [function] [call site] 01910
9 getenv [call site] 01911
9 tokenise_search_path [function] [call site] 01912
10 strlen [call site] 01913
10 strncmp [call site] 01914
10 strncmp [call site] 01915
10 strncmp [call site] 01916
10 strncmp [call site] 01917
10 strncmp [call site] 01918
10 strncmp [call site] 01919
10 strncmp [call site] 01920
10 strncmp [call site] 01921
10 strncmp [call site] 01922
9 strncmp [call site] 01923
9 find_file_url [function] [call site] 01924
10 expand_path [function] [call site] 01925
11 strlen [call site] 01926
11 strlen [call site] 01927
11 hts_log [function] [call site] 01928
11 strchr [call site] 01929
11 strtol [call site] 01930
10 hopen [function] [call site] 01931
10 __errno_location [call site] 01932
10 __errno_location [call site] 01933
10 strerror [call site] 01934
10 hts_log [function] [call site] 01935
10 mfcreate [function] [call site] 01936
10 hread [function] [call site] 01937
10 mfwrite [function] [call site] 01938
11 realloc [call site] 01939
10 hclose_abruptly [function] [call site] 01940
10 hclose [function] [call site] 01941
10 __errno_location [call site] 01942
10 strerror [call site] 01943
10 hts_log [function] [call site] 01944
10 mrewind [function] [call site] 01945
10 mfdestroy [function] [call site] 01946
9 strncmp [call site] 01947
9 hisremote [function] [call site] 01948
9 find_file_url [function] [call site] 01949
9 find_file_dir [function] [call site] 01950
10 expand_path [function] [call site] 01951
10 is_file [function] [call site] 01952
11 stat [call site] 01953
10 mfopen [function] [call site] 01954
11 fopen [call site] 01955
11 mfreopen [function] [call site] 01956
12 strchr [call site] 01957
12 strchr [call site] 01958
12 strchr [call site] 01959
12 strchr [call site] 01960
12 strchr [call site] 01961
12 strchr [call site] 01962
12 strchr [call site] 01963
12 mfcreate [function] [call site] 01964
12 mfmmap [function] [call site] 01965
13 stat [call site] 01966
13 fileno [call site] 01967
13 mmap [call site] 01968
12 mfload [function] [call site] 01969
13 stat [call site] 01970
13 realloc [call site] 01971
13 fread [call site] 01972
13 feof [call site] 01973
12 fseek [call site] 01974
12 mfcreate [function] [call site] 01975
12 hts_log [function] [call site] 01976
12 fseek [call site] 01977
9 strlen [call site] 01978
9 strcpy [call site] 01979
9 strrchr [call site] 01980
9 find_file_dir [function] [call site] 01981
8 mfsteal [function] [call site] 01982
9 mfdetach [function] [call site] 01983
10 mfflush [function] [call site] 01984
10 fclose [call site] 01985
9 mfdestroy [function] [call site] 01986
8 sam_hrecs_find_key [function] [call site] 01987
8 strstr [call site] 01988
8 strncmp [call site] 01989
8 hts_log [function] [call site] 01990
8 strncmp [call site] 01991
8 bgzf_close [function] [call site] 01992
8 refs_load_fai [function] [call site] 01993
8 sanitise_SQ_lines [function] [call site] 01994
8 bgzf_close [function] [call site] 01995
8 refs2id [function] [call site] 01996
8 expand_cache_path [function] [call site] 01997
8 hts_log [function] [call site] 01998
8 mkdir_prefix [function] [call site] 01999
9 strrchr [call site] 02000
9 is_directory [function] [call site] 02001
10 stat [call site] 02002
9 mkdir [call site] 02003
9 chmod [call site] 02004
9 mkdir_prefix [function] [call site] 02005
10 mkdir [call site] 02006
10 chmod [call site] 02007
8 hts_open_tmpfile [function] [call site] 02008
9 getpid [call site] 02009
9 time [call site] 02010
9 clock [call site] 02011
9 ks_clear [function] [call site] 02012
9 ksprintf [function] [call site] 02013
9 hopen [function] [call site] 02014
9 __errno_location [call site] 02015
8 perror [call site] 02016
8 hts_md5_init [function] [call site] 02017
9 hts_md5_reset [function] [call site] 02018
8 hclose_abruptly [function] [call site] 02019
8 unlink [call site] 02020
8 hts_md5_update [function] [call site] 02021
9 body [function] [call site] 02022
9 body [function] [call site] 02023
8 hts_md5_final [function] [call site] 02024
9 body [function] [call site] 02025
9 body [function] [call site] 02026
8 hts_md5_destroy [function] [call site] 02027
8 hts_md5_hex [function] [call site] 02028
8 strncmp [call site] 02029
8 hts_log [function] [call site] 02030
8 hclose_abruptly [function] [call site] 02031
8 unlink [call site] 02032
8 hwrite [function] [call site] 02033
8 hclose [function] [call site] 02034
8 chmod [call site] 02035
8 rename [call site] 02036
8 __errno_location [call site] 02037
8 strerror [call site] 02038
8 hts_log [function] [call site] 02039
8 unlink [call site] 02040
7 hts_log [function] [call site] 02041
7 hts_log [function] [call site] 02042
7 pthread_mutex_unlock [call site] 02043
7 pthread_mutex_unlock [call site] 02044
7 cram_ref_incr_locked [function] [call site] 02045
7 cram_ref_incr_locked [function] [call site] 02046
7 cram_ref_load [function] [call site] 02047
8 __assert_fail [call site] 02048
8 __assert_fail [call site] 02049
8 ref_entry_free_seq [function] [call site] 02050
8 strcmp [call site] 02051
8 bgzf_close [function] [call site] 02052
8 bgzf_open_ref [function] [call site] 02053
8 load_ref_portion [function] [call site] 02054
9 bgzf_useek [function] [call site] 02055
10 hseek [function] [call site] 02056
10 bgzf_read_block [function] [call site] 02057
10 bgzf_seek_common [function] [call site] 02058
11 pthread_mutex_lock [call site] 02059
11 pthread_cond_signal [call site] 02060
11 hts_tpool_wake_dispatch [function] [call site] 02061
11 pthread_cond_wait [call site] 02062
11 pthread_cond_signal [call site] 02063
11 abort [call site] 02064
11 __errno_location [call site] 02065
11 pthread_mutex_unlock [call site] 02066
11 pthread_mutex_unlock [call site] 02067
11 hseek [function] [call site] 02068
10 bgzf_read_block [function] [call site] 02069
10 __assert_fail [call site] 02070
9 perror [call site] 02071
9 bgzf_read [function] [call site] 02072
10 __assert_fail [call site] 02073
10 bgzf_read_block [function] [call site] 02074
10 hts_log [function] [call site] 02075
10 bgzf_htell [function] [call site] 02076
10 hts_log [function] [call site] 02077
10 bgzf_htell [function] [call site] 02078
9 perror [call site] 02079
9 isspace_c [function] [call site] 02080
9 isspace_c [function] [call site] 02081
9 isspace_c [function] [call site] 02082
9 hts_log [function] [call site] 02083
9 toupper_c [function] [call site] 02084
10 toupper [call site] 02085
7 pthread_mutex_unlock [call site] 02086
7 pthread_mutex_unlock [call site] 02087
7 cram_ref_incr_locked [function] [call site] 02088
7 pthread_mutex_unlock [call site] 02089
7 pthread_mutex_unlock [call site] 02090
7 pthread_mutex_unlock [call site] 02091
7 pthread_mutex_unlock [call site] 02092
7 strcmp [call site] 02093
7 bgzf_close [function] [call site] 02094
7 bgzf_open_ref [function] [call site] 02095
7 pthread_mutex_unlock [call site] 02096
7 pthread_mutex_unlock [call site] 02097
7 load_ref_portion [function] [call site] 02098
7 pthread_mutex_unlock [call site] 02099
7 pthread_mutex_unlock [call site] 02100
7 pthread_mutex_unlock [call site] 02101
7 pthread_mutex_unlock [call site] 02102
6 hts_log [function] [call site] 02103
6 hts_log [function] [call site] 02104
6 pthread_mutex_lock [call site] 02105
6 pthread_mutex_unlock [call site] 02106
6 hts_log [function] [call site] 02107
6 hts_log [function] [call site] 02108
6 hts_log [function] [call site] 02109
6 hts_log [function] [call site] 02110
6 pthread_mutex_lock [call site] 02111
6 pthread_mutex_unlock [call site] 02112
6 validate_md5 [function] [call site] 02113
7 sam_hrecs_find_type_id [function] [call site] 02114
7 sam_hrecs_find_key [function] [call site] 02115
7 hts_md5_init [function] [call site] 02116
7 hts_md5_update [function] [call site] 02117
7 hts_md5_final [function] [call site] 02118
7 hts_md5_destroy [function] [call site] 02119
7 hts_md5_hex [function] [call site] 02120
7 strcmp [call site] 02121
7 hts_log [function] [call site] 02122
7 hts_log [function] [call site] 02123
6 cram_ref_incr [function] [call site] 02124
7 pthread_mutex_lock [call site] 02125
7 cram_ref_incr_locked [function] [call site] 02126
7 pthread_mutex_unlock [call site] 02127
6 cram_get_ref [function] [call site] 02128
6 validate_md5 [function] [call site] 02129
6 hts_log [function] [call site] 02130
6 __assert_fail [call site] 02131
6 lossy_read_names [function] [call site] 02132
7 kh_init_m_s2u64 [function] [call site] 02133
8 calloc [call site] 02134
7 expected_template_count [function] [call site] 02135
8 bam_aux_get [function] [call site] 02136
9 bam_aux_first [function] [call site] 02137
10 __errno_location [call site] 02138
9 skip_aux [function] [call site] 02139
10 aux_type2size [function] [call site] 02140
10 memchr [call site] 02141
10 aux_type2size [function] [call site] 02142
10 le_to_u32 [function] [call site] 02143
9 bam_aux_next [function] [call site] 02144
10 skip_aux [function] [call site] 02145
10 __errno_location [call site] 02146
10 hts_log [function] [call site] 02147
10 __errno_location [call site] 02148
9 hts_log [function] [call site] 02149
9 __errno_location [call site] 02150
8 bam_data_end [function] [call site] 02151
8 bam_aux2i_end [function] [call site] 02152
9 __errno_location [call site] 02153
9 __errno_location [call site] 02154
9 __errno_location [call site] 02155
9 le_to_i16 [function] [call site] 02156
10 le_to_u16 [function] [call site] 02157
9 __errno_location [call site] 02158
9 le_to_u16 [function] [call site] 02159
9 __errno_location [call site] 02160
9 le_to_i32 [function] [call site] 02161
10 le_to_u32 [function] [call site] 02162
9 __errno_location [call site] 02163
9 le_to_u32 [function] [call site] 02164
9 __errno_location [call site] 02165
8 bam_aux_get [function] [call site] 02166
7 kh_put_m_s2u64 [function] [call site] 02167
8 kh_resize_m_s2u64 [function] [call site] 02168
9 realloc [call site] 02169
9 __ac_FNV1a_hash_string [function] [call site] 02170
8 strcmp [call site] 02171
7 kh_get_m_s2u64 [function] [call site] 02172
7 kh_destroy_m_s2u64 [function] [call site] 02173
6 cram_generate_reference [function] [call site] 02174
7 extend_ref [function] [call site] 02175
8 realloc [call site] 02176
8 realloc [call site] 02177
7 hts_log [function] [call site] 02178
7 cram_add_to_ref [function] [call site] 02179
8 bam_aux_get [function] [call site] 02180
8 cram_add_to_ref_MD [function] [call site] 02181
9 __ctype_b_loc [call site] 02182
9 hts_str2uint [function] [call site] 02183
9 extend_ref [function] [call site] 02184
9 next_cigar_op [function] [call site] 02185
9 hts_log [function] [call site] 02186
9 __ctype_b_loc [call site] 02187
9 extend_ref [function] [call site] 02188
9 next_cigar_op [function] [call site] 02189
9 hts_log [function] [call site] 02190
9 extend_ref [function] [call site] 02191
9 next_cigar_op [function] [call site] 02192
9 hts_log [function] [call site] 02193
8 extend_ref [function] [call site] 02194
6 hts_log [function] [call site] 02195
6 hts_log [function] [call site] 02196
6 pthread_mutex_lock [call site] 02197
6 pthread_mutex_unlock [call site] 02198
6 pthread_mutex_lock [call site] 02199
6 pthread_mutex_unlock [call site] 02200
6 cram_ref_decr [function] [call site] 02201
7 pthread_mutex_lock [call site] 02202
7 cram_ref_decr_locked [function] [call site] 02203
8 __assert_fail [call site] 02204
8 ref_entry_free_seq [function] [call site] 02205
7 pthread_mutex_unlock [call site] 02206
6 cram_get_ref [function] [call site] 02207
6 hts_log [function] [call site] 02208
6 validate_md5 [function] [call site] 02209
6 process_one_read [function] [call site] 02210
7 bam_aux_get [function] [call site] 02211
7 bam_aux_get [function] [call site] 02212
7 cram_stats_add [function] [call site] 02213
8 kh_init_m_i2i [function] [call site] 02214
9 calloc [call site] 02215
8 kh_put_m_i2i [function] [call site] 02216
9 kh_resize_m_i2i [function] [call site] 02217
10 realloc [call site] 02218
7 cram_stats_add [function] [call site] 02219
7 cram_stats_add [function] [call site] 02220
7 block_grow [function] [call site] 02221
8 block_resize [function] [call site] 02222
9 block_resize_exact [function] [call site] 02223
10 realloc [call site] 02224
7 block_grow [function] [call site] 02225
7 nibble2base [function] [call site] 02226
7 hts_log [function] [call site] 02227
7 realloc [call site] 02228
7 hts_log [function] [call site] 02229
7 kputuw [function] [call site] 02230
8 ks_resize [function] [call site] 02231
8 ks_resize [function] [call site] 02232
7 kputc [function] [call site] 02233
8 ks_resize [function] [call site] 02234
7 cram_add_substitution [function] [call site] 02235
8 cram_stats_add [function] [call site] 02236
8 cram_stats_add [function] [call site] 02237
8 cram_stats_add [function] [call site] 02238
8 block_append_char [function] [call site] 02239
9 block_grow [function] [call site] 02240
8 cram_add_feature [function] [call site] 02241
9 realloc [call site] 02242
9 cram_stats_add [function] [call site] 02243
9 cram_stats_add [function] [call site] 02244
9 cram_stats_add [function] [call site] 02245
7 cram_add_bases [function] [call site] 02246
8 cram_add_feature [function] [call site] 02247
7 cram_add_base [function] [call site] 02248
8 cram_stats_add [function] [call site] 02249
8 cram_stats_add [function] [call site] 02250
8 block_append_char [function] [call site] 02251
8 cram_add_feature [function] [call site] 02252
7 cram_add_base [function] [call site] 02253
7 kputuw [function] [call site] 02254
7 kputc_ [function] [call site] 02255
8 ks_resize [function] [call site] 02256
7 kputsn [function] [call site] 02257
8 ks_resize [function] [call site] 02258
7 cram_add_deletion [function] [call site] 02259
8 cram_stats_add [function] [call site] 02260
8 cram_add_feature [function] [call site] 02261
7 cram_add_skip [function] [call site] 02262
8 cram_stats_add [function] [call site] 02263
8 cram_add_feature [function] [call site] 02264
7 cram_add_insertion [function] [call site] 02265
8 cram_stats_add [function] [call site] 02266
8 block_append [function] [call site] 02267
9 block_grow [function] [call site] 02268
8 block_append_char [function] [call site] 02269
8 block_append_char [function] [call site] 02270
8 cram_add_feature [function] [call site] 02271
7 cram_add_quality [function] [call site] 02272
8 cram_stats_add [function] [call site] 02273
8 block_append_char [function] [call site] 02274
8 cram_add_feature [function] [call site] 02275
7 cram_add_softclip [function] [call site] 02276
8 block_append [function] [call site] 02277
8 block_append_char [function] [call site] 02278
8 block_append [function] [call site] 02279
8 block_append_char [function] [call site] 02280
8 block_append_char [function] [call site] 02281
8 cram_add_feature [function] [call site] 02282
7 cram_add_quality [function] [call site] 02283
7 cram_add_quality [function] [call site] 02284
7 cram_add_hardclip [function] [call site] 02285
8 cram_stats_add [function] [call site] 02286
8 cram_add_feature [function] [call site] 02287
7 cram_add_pad [function] [call site] 02288
8 cram_stats_add [function] [call site] 02289
8 cram_add_feature [function] [call site] 02290
7 hts_log [function] [call site] 02291
7 hts_log [function] [call site] 02292
7 cram_stats_add [function] [call site] 02293
7 kputuw [function] [call site] 02294
7 cram_stats_add [function] [call site] 02295
7 cram_encode_aux [function] [call site] 02296
8 bam_data_end [function] [call site] 02297
8 hts_log [function] [call site] 02298
8 sam_hrecs_find_rg [function] [call site] 02299
9 kh_get_m_s2i [function] [call site] 02300
8 block_append [function] [call site] 02301
8 hts_log [function] [call site] 02302
8 strncasecmp [call site] 02303
8 hts_log [function] [call site] 02304
8 block_append [function] [call site] 02305
8 bam_aux2i_end [function] [call site] 02306
8 hts_log [function] [call site] 02307
8 block_append [function] [call site] 02308
8 block_append [function] [call site] 02309
8 kh_put_m_tagmap [function] [call site] 02310
9 kh_resize_m_tagmap [function] [call site] 02311
10 realloc [call site] 02312
8 pthread_mutex_lock [call site] 02313
8 kh_put_m_metrics [function] [call site] 02314
9 kh_resize_m_metrics [function] [call site] 02315
10 realloc [call site] 02316
8 pthread_mutex_unlock [call site] 02317
8 cram_new_metrics [function] [call site] 02318
8 kh_del_m_metrics [function] [call site] 02319
8 pthread_mutex_unlock [call site] 02320
8 pthread_mutex_unlock [call site] 02321
8 calloc [call site] 02322
8 cram_encoder_init [function] [call site] 02323
9 cram_encoding2str [function] [call site] 02324
9 hts_log [function] [call site] 02325
9 cram_encoding2str [function] [call site] 02326
9 hts_log [function] [call site] 02327
9 abort [call site] 02328
8 cram_stats_add [function] [call site] 02329
8 cram_stats_encoding [function] [call site] 02330
9 realloc [call site] 02331
9 realloc [call site] 02332
9 realloc [call site] 02333
9 realloc [call site] 02334
9 __assert_fail [call site] 02335
8 cram_encoder_init [function] [call site] 02336
8 cram_stats_add [function] [call site] 02337
8 cram_stats_encoding [function] [call site] 02338
8 cram_encoder_init [function] [call site] 02339
8 cram_stats_add [function] [call site] 02340
8 cram_stats_encoding [function] [call site] 02341
8 cram_encoder_init [function] [call site] 02342
8 cram_encoder_init [function] [call site] 02343
8 hts_log [function] [call site] 02344
8 pthread_mutex_lock [call site] 02345
8 pthread_mutex_unlock [call site] 02346
8 cram_new_block [function] [call site] 02347
8 block_append_char [function] [call site] 02348
8 cram_new_block [function] [call site] 02349
8 block_append [function] [call site] 02350
8 cram_new_block [function] [call site] 02351
8 block_append [function] [call site] 02352
8 cram_new_block [function] [call site] 02353
8 block_append [function] [call site] 02354
8 cram_new_block [function] [call site] 02355
8 hts_log [function] [call site] 02356
8 cram_new_block [function] [call site] 02357
8 cram_new_block [function] [call site] 02358
8 hts_log [function] [call site] 02359
8 hts_log [function] [call site] 02360
8 block_append_char [function] [call site] 02361
8 string_ndup [function] [call site] 02362
8 kh_put_m_s2i [function] [call site] 02363
9 kh_resize_m_s2i [function] [call site] 02364
10 __ac_FNV1a_hash_string [function] [call site] 02365
8 cram_stats_add [function] [call site] 02366
7 sam_hrecs_find_rg [function] [call site] 02367
7 cram_stats_add [function] [call site] 02368
7 block_grow [function] [call site] 02369
7 block_grow [function] [call site] 02370
7 cram_stats_add [function] [call site] 02371
7 string_ndup [function] [call site] 02372
7 kh_put_m_s2i [function] [call site] 02373
7 cram_stats_add [function] [call site] 02374
7 cram_stats_add [function] [call site] 02375
7 cram_stats_del [function] [call site] 02376
8 __assert_fail [call site] 02377
8 kh_get_m_i2i [function] [call site] 02378
8 kh_del_m_i2i [function] [call site] 02379
8 hts_log [function] [call site] 02380
8 hts_log [function] [call site] 02381
7 cram_stats_del [function] [call site] 02382
7 cram_stats_del [function] [call site] 02383
7 cram_stats_del [function] [call site] 02384
7 cram_stats_add [function] [call site] 02385
7 cram_stats_del [function] [call site] 02386
7 cram_stats_add [function] [call site] 02387
7 cram_stats_add [function] [call site] 02388
7 cram_stats_add [function] [call site] 02389
7 cram_stats_add [function] [call site] 02390
7 cram_stats_add [function] [call site] 02391
7 cram_stats_add [function] [call site] 02392
7 cram_stats_add [function] [call site] 02393
7 cram_stats_add [function] [call site] 02394
6 add_read_names [function] [call site] 02395
7 block_append [function] [call site] 02396
7 block_append [function] [call site] 02397
7 cram_stats_add [function] [call site] 02398
6 calloc [call site] 02399
6 __assert_fail [call site] 02400
6 cram_ref_decr [function] [call site] 02401
6 pthread_mutex_lock [call site] 02402
6 pthread_mutex_unlock [call site] 02403
6 cram_stats_encoding [function] [call site] 02404
6 pthread_mutex_lock [call site] 02405
6 pthread_mutex_unlock [call site] 02406
6 hts_log [function] [call site] 02407
6 hts_md5_init [function] [call site] 02408
6 hts_md5_update [function] [call site] 02409
6 hts_md5_final [function] [call site] 02410
6 hts_md5_destroy [function] [call site] 02411
6 cram_stats_encoding [function] [call site] 02412
6 cram_encoder_init [function] [call site] 02413
6 cram_stats_encoding [function] [call site] 02414
6 cram_encoder_init [function] [call site] 02415
6 cram_stats_encoding [function] [call site] 02416
6 cram_encoder_init [function] [call site] 02417
6 cram_encoder_init [function] [call site] 02418
6 cram_encoder_init [function] [call site] 02419
6 cram_stats_encoding [function] [call site] 02420
6 cram_encoder_init [function] [call site] 02421
6 cram_stats_encoding [function] [call site] 02422
6 cram_encoder_init [function] [call site] 02423
6 cram_stats_encoding [function] [call site] 02424
6 cram_encoder_init [function] [call site] 02425
6 cram_stats_encoding [function] [call site] 02426
6 cram_encoder_init [function] [call site] 02427
6 cram_stats_encoding [function] [call site] 02428
6 cram_encoder_init [function] [call site] 02429
6 cram_stats_encoding [function] [call site] 02430
6 cram_encoder_init [function] [call site] 02431
6 cram_stats_encoding [function] [call site] 02432
6 cram_encoder_init [function] [call site] 02433
6 cram_stats_encoding [function] [call site] 02434
6 cram_encoder_init [function] [call site] 02435
6 cram_stats_encoding [function] [call site] 02436
6 cram_encoder_init [function] [call site] 02437
6 cram_stats_encoding [function] [call site] 02438
6 cram_encoder_init [function] [call site] 02439
6 cram_stats_encoding [function] [call site] 02440
6 cram_encoder_init [function] [call site] 02441
6 cram_stats_encoding [function] [call site] 02442
6 cram_encoder_init [function] [call site] 02443
6 cram_stats_encoding [function] [call site] 02444
6 cram_encoder_init [function] [call site] 02445
6 cram_encoder_init [function] [call site] 02446
6 cram_stats_encoding [function] [call site] 02447
6 cram_encoder_init [function] [call site] 02448
6 cram_stats_encoding [function] [call site] 02449
6 cram_encoder_init [function] [call site] 02450
6 cram_stats_encoding [function] [call site] 02451
6 cram_encoder_init [function] [call site] 02452
6 cram_stats_encoding [function] [call site] 02453
6 cram_encoder_init [function] [call site] 02454
6 cram_stats_encoding [function] [call site] 02455
6 cram_encoder_init [function] [call site] 02456
6 cram_stats_encoding [function] [call site] 02457
6 cram_encoder_init [function] [call site] 02458
6 cram_stats_encoding [function] [call site] 02459
6 cram_encoder_init [function] [call site] 02460
6 cram_stats_encoding [function] [call site] 02461
6 cram_encoder_init [function] [call site] 02462
6 cram_encoder_init [function] [call site] 02463
6 cram_encoder_init [function] [call site] 02464
6 cram_encoder_init [function] [call site] 02465
6 cram_encoder_init [function] [call site] 02466
6 hts_log [function] [call site] 02467
6 cram_encode_slice [function] [call site] 02468
7 calloc [call site] 02469
7 cram_new_block [function] [call site] 02470
7 cram_new_block [function] [call site] 02471
7 cram_new_block [function] [call site] 02472
7 block_append [function] [call site] 02473
7 cram_allocate_block [function] [call site] 02474
8 cram_new_block [function] [call site] 02475
8 cram_new_block [function] [call site] 02476
8 cram_allocate_block [function] [call site] 02477
9 cram_allocate_block [function] [call site] 02478
10 cram_allocate_block [function] [call site] 02479
11 cram_allocate_block [function] [call site] 02480
12 cram_allocate_block [function] [call site] 02481
13 cram_new_block [function] [call site] 02482
13 cram_allocate_block [function] [call site] 02483
14 cram_new_block [function] [call site] 02484
7 cram_encode_slice_read [function] [call site] 02485
8 hts_log [function] [call site] 02486
7 cram_free_block [function] [call site] 02487
7 cram_free_block [function] [call site] 02488
7 cram_free_block [function] [call site] 02489
7 cram_free_block [function] [call site] 02490
7 cram_compress_slice [function] [call site] 02491
8 cram_compress_block2 [function] [call site] 02492
9 cram_compress_block3 [function] [call site] 02493
10 pthread_mutex_lock [call site] 02494
10 pthread_mutex_unlock [call site] 02495
10 cram_compress_by_method [function] [call site] 02496
11 zlib_mem_deflate [function] [call site] 02497
12 deflateInit2_ [call site] 02498
12 hts_log [function] [call site] 02499
12 hts_log [function] [call site] 02500
12 deflate [call site] 02501
12 hts_log [function] [call site] 02502
12 deflate [call site] 02503
12 hts_log [function] [call site] 02504
12 deflateEnd [call site] 02505
12 hts_log [function] [call site] 02506
11 BZ2_bzBuffToBuffCompress [call site] 02507
11 fqz_compress [function] [call site] 02508
12 compress_block_fqz2f [function] [call site] 02509
13 fqz_pick_parameters [function] [call site] 02510
14 calloc [call site] 02511
14 fqz_qual_stats [function] [call site] 02512
15 calloc [call site] 02513
15 memcmp [call site] 02514
15 fast_log [function] [call site] 02515
15 fast_log [function] [call site] 02516
15 fast_log [function] [call site] 02517
15 fast_log [function] [call site] 02518
15 fast_log [function] [call site] 02519
15 fast_log [function] [call site] 02520
15 fast_log [function] [call site] 02521
15 log [call site] 02522
15 log [call site] 02523
15 log [call site] 02524
15 log [call site] 02525
15 log [call site] 02526
15 log [call site] 02527
15 log [call site] 02528
15 log [call site] 02529
14 log [call site] 02530
13 var_put_u32 [function] [call site] 02531
14 var_put_u32_safe [function] [call site] 02532
13 fqz_store_parameters [function] [call site] 02533
14 store_array [function] [call site] 02534
14 fqz_store_parameters1 [function] [call site] 02535
15 store_array [function] [call site] 02536
15 store_array [function] [call site] 02537
15 store_array [function] [call site] 02538
13 fqz_create_models [function] [call site] 02539
13 RC_SetOutput [function] [call site] 02540
13 RC_SetOutputEnd [function] [call site] 02541
13 RC_StartEncode [function] [call site] 02542
13 compress_new_read [function] [call site] 02543
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02544
15 RC_Encode [function] [call site] 02545
16 RC_ShiftLowCheck [function] [call site] 02546
15 SIMPLE_MODEL256_normalize [function] [call site] 02547
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02548
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02549
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02550
14 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02551
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02552
15 SIMPLE_MODEL2_normalize [function] [call site] 02553
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02554
14 memcmp [call site] 02555
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02556
14 SIMPLE_MODEL2_encodeSymbol [function] [call site] 02557
13 mm_prefetch [function] [call site] 02558
13 fqz_update_ctx [function] [call site] 02559
13 mm_prefetch [function] [call site] 02560
13 fqz_update_ctx [function] [call site] 02561
13 mm_prefetch [function] [call site] 02562
13 fqz_update_ctx [function] [call site] 02563
13 mm_prefetch [function] [call site] 02564
13 fqz_update_ctx [function] [call site] 02565
13 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02566
13 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02567
13 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02568
13 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02569
13 mm_prefetch [function] [call site] 02570
13 fqz_update_ctx [function] [call site] 02571
13 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02572
13 RC_FinishEncode [function] [call site] 02573
14 RC_ShiftLowCheck [function] [call site] 02574
13 RC_OutSize [function] [call site] 02575
13 fqz_destroy_models [function] [call site] 02576
13 fqz_free_parameters [function] [call site] 02577
11 lzma_mem_deflate [function] [call site] 02578
12 lzma_stream_buffer_bound [call site] 02579
12 lzma_easy_buffer_encode [call site] 02580
11 rans_compress [function] [call site] 02581
12 rans_compress_O1 [function] [call site] 02582
13 rans_compress_O0 [function] [call site] 02583
14 hist8 [function] [call site] 02584
15 htscodecs_tls_calloc [function] [call site] 02585
15 htscodecs_tls_free [function] [call site] 02586
14 __assert_fail [call site] 02587
14 RansEncSymbolInit [function] [call site] 02588
15 __assert_fail [call site] 02589
15 __assert_fail [call site] 02590
14 RansEncInit [function] [call site] 02591
14 RansEncInit [function] [call site] 02592
14 RansEncInit [function] [call site] 02593
14 RansEncInit [function] [call site] 02594
14 RansEncPutSymbol [function] [call site] 02595
15 __assert_fail [call site] 02596
14 RansEncPutSymbol [function] [call site] 02597
14 RansEncPutSymbol [function] [call site] 02598
14 RansEncPutSymbol [function] [call site] 02599
14 RansEncPutSymbol [function] [call site] 02600
14 RansEncPutSymbol [function] [call site] 02601
14 RansEncPutSymbol [function] [call site] 02602
14 RansEncFlush [function] [call site] 02603
14 RansEncFlush [function] [call site] 02604
14 RansEncFlush [function] [call site] 02605
14 RansEncFlush [function] [call site] 02606
13 htscodecs_tls_alloc [function] [call site] 02607
13 hist1_4 [function] [call site] 02608
14 htscodecs_tls_calloc [function] [call site] 02609
14 htscodecs_tls_free [function] [call site] 02610
13 RansEncSymbolInit [function] [call site] 02611
13 __assert_fail [call site] 02612
13 RansEncInit [function] [call site] 02613
13 RansEncInit [function] [call site] 02614
13 RansEncInit [function] [call site] 02615
13 RansEncInit [function] [call site] 02616
13 RansEncPutSymbol [function] [call site] 02617
13 RansEncPutSymbol4 [function] [call site] 02618
14 __assert_fail [call site] 02619
14 __assert_fail [call site] 02620
14 __assert_fail [call site] 02621
14 __assert_fail [call site] 02622
13 RansEncPutSymbol [function] [call site] 02623
13 RansEncPutSymbol [function] [call site] 02624
13 RansEncPutSymbol [function] [call site] 02625
13 RansEncPutSymbol [function] [call site] 02626
13 RansEncFlush [function] [call site] 02627
13 RansEncFlush [function] [call site] 02628
13 RansEncFlush [function] [call site] 02629
13 RansEncFlush [function] [call site] 02630
13 htscodecs_tls_free [function] [call site] 02631
12 rans_compress_O0 [function] [call site] 02632
11 rans_compress_4x16 [function] [call site] 02633
12 rans_compress_to_4x16 [function] [call site] 02634
13 rans_compress_bound_4x16 [function] [call site] 02635
13 var_put_u32 [function] [call site] 02636
13 rans_compress_to_4x16 [function] [call site] 02637
14 realloc [call site] 02638
14 var_put_u32 [function] [call site] 02639
14 var_put_u32 [function] [call site] 02640
14 var_put_u32 [function] [call site] 02641
14 hts_pack [function] [call site] 02642
14 var_put_u32 [function] [call site] 02643
14 hts_rle_encode [function] [call site] 02644
15 rle_find_syms [function] [call site] 02645
15 var_put_u32 [function] [call site] 02646
14 var_put_u32 [function] [call site] 02647
14 var_put_u32 [function] [call site] 02648
14 rans_enc_func [function] [call site] 02649
15 pthread_once [call site] 02650
15 htscodecs_tls_cpu_init [function] [call site] 02651
15 strerror [call site] 02652
15 fprintf [call site] 02653
15 fprintf [call site] 02654
14 var_put_u32 [function] [call site] 02655
14 var_put_u32 [function] [call site] 02656
14 var_put_u32 [function] [call site] 02657
14 rans_enc_func [function] [call site] 02658
11 arith_compress_to [function] [call site] 02659
12 arith_compress_bound [function] [call site] 02660
12 var_put_u32 [function] [call site] 02661
12 var_put_u32 [function] [call site] 02662
12 arith_compress_to [function] [call site] 02663
13 arith_compress_to [function] [call site] 02664
14 var_put_u32 [function] [call site] 02665
14 var_put_u32 [function] [call site] 02666
14 hts_pack [function] [call site] 02667
14 var_put_u32 [function] [call site] 02668
14 BZ2_bzBuffToBuffCompress [call site] 02669
14 arith_compress_O0_RLE [function] [call site] 02670
15 arith_compress_bound [function] [call site] 02671
15 SIMPLE_MODEL256_init [function] [call site] 02672
15 htscodecs_tls_alloc [function] [call site] 02673
15 SIMPLE_MODEL258_init [function] [call site] 02674
15 RC_SetOutput [function] [call site] 02675
15 RC_SetOutputEnd [function] [call site] 02676
15 RC_StartEncode [function] [call site] 02677
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02678
15 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02679
16 SIMPLE_MODEL258_normalize [function] [call site] 02680
15 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02681
15 RC_FinishEncode [function] [call site] 02682
15 htscodecs_tls_free [function] [call site] 02683
15 RC_OutSize [function] [call site] 02684
15 htscodecs_tls_free [function] [call site] 02685
14 arith_compress_O1_RLE [function] [call site] 02686
15 arith_compress_bound [function] [call site] 02687
15 htscodecs_tls_alloc [function] [call site] 02688
15 SIMPLE_MODEL256_init [function] [call site] 02689
15 htscodecs_tls_alloc [function] [call site] 02690
15 htscodecs_tls_free [function] [call site] 02691
15 SIMPLE_MODEL258_init [function] [call site] 02692
15 RC_SetOutput [function] [call site] 02693
15 RC_SetOutputEnd [function] [call site] 02694
15 RC_StartEncode [function] [call site] 02695
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02696
15 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02697
15 SIMPLE_MODEL258_encodeSymbol [function] [call site] 02698
15 RC_FinishEncode [function] [call site] 02699
15 htscodecs_tls_free [function] [call site] 02700
15 htscodecs_tls_free [function] [call site] 02701
15 RC_OutSize [function] [call site] 02702
15 htscodecs_tls_free [function] [call site] 02703
15 htscodecs_tls_free [function] [call site] 02704
14 arith_compress_O1 [function] [call site] 02705
15 arith_compress_bound [function] [call site] 02706
15 htscodecs_tls_alloc [function] [call site] 02707
15 SIMPLE_MODEL256_init [function] [call site] 02708
15 RC_SetOutput [function] [call site] 02709
15 RC_SetOutputEnd [function] [call site] 02710
15 RC_StartEncode [function] [call site] 02711
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02712
15 RC_FinishEncode [function] [call site] 02713
15 htscodecs_tls_free [function] [call site] 02714
15 RC_OutSize [function] [call site] 02715
15 htscodecs_tls_free [function] [call site] 02716
14 arith_compress_O0 [function] [call site] 02717
15 arith_compress_bound [function] [call site] 02718
15 SIMPLE_MODEL256_init [function] [call site] 02719
15 RC_SetOutput [function] [call site] 02720
15 RC_SetOutputEnd [function] [call site] 02721
15 RC_StartEncode [function] [call site] 02722
15 SIMPLE_MODEL256_encodeSymbol [function] [call site] 02723
15 RC_FinishEncode [function] [call site] 02724
15 RC_OutSize [function] [call site] 02725
11 tok3_encode_names [function] [call site] 02726
12 create_context [function] [call site] 02727
12 build_trie [function] [call site] 02728
13 calloc [call site] 02729
13 pool_create [function] [call site] 02730
13 pool_alloc [function] [call site] 02731
14 new_pool [function] [call site] 02732
15 realloc [call site] 02733
12 free_context [function] [call site] 02734
12 free_context [function] [call site] 02735
12 encode_name [function] [call site] 02736
13 search_trie [function] [call site] 02737
14 __ctype_b_loc [call site] 02738
14 __ctype_b_loc [call site] 02739
14 __ctype_b_loc [call site] 02740
14 __ctype_b_loc [call site] 02741
14 __ctype_b_loc [call site] 02742
14 calloc [call site] 02743
14 __ctype_b_loc [call site] 02744
13 strlen [call site] 02745
13 encode_token_dup [function] [call site] 02746
14 encode_token_int [function] [call site] 02747
15 encode_token_type [function] [call site] 02748
16 descriptor_grow [function] [call site] 02749
17 realloc [call site] 02750
15 descriptor_grow [function] [call site] 02751
13 encode_token_diff [function] [call site] 02752
14 encode_token_int [function] [call site] 02753
13 encode_token_char [function] [call site] 02754
14 encode_token_type [function] [call site] 02755
14 descriptor_grow [function] [call site] 02756
13 memcmp [call site] 02757
13 encode_token_match [function] [call site] 02758
14 encode_token_type [function] [call site] 02759
13 encode_token_alpha [function] [call site] 02760
14 encode_token_type [function] [call site] 02761
14 descriptor_grow [function] [call site] 02762
13 encode_token_alpha [function] [call site] 02763
13 __ctype_b_loc [call site] 02764
13 __ctype_b_loc [call site] 02765
13 __ctype_b_loc [call site] 02766
13 memcmp [call site] 02767
13 encode_token_match [function] [call site] 02768
13 encode_token_alpha [function] [call site] 02769
13 encode_token_alpha [function] [call site] 02770
13 __ctype_b_loc [call site] 02771
13 encode_token_match [function] [call site] 02772
13 encode_token_int1 [function] [call site] 02773
14 encode_token_type [function] [call site] 02774
14 descriptor_grow [function] [call site] 02775
13 encode_token_int1_ [function] [call site] 02776
14 descriptor_grow [function] [call site] 02777
13 encode_token_int [function] [call site] 02778
13 encode_token_int1_ [function] [call site] 02779
13 encode_token_int [function] [call site] 02780
13 __ctype_b_loc [call site] 02781
13 __ctype_b_loc [call site] 02782
13 encode_token_match [function] [call site] 02783
13 encode_token_int1 [function] [call site] 02784
13 encode_token_int [function] [call site] 02785
13 encode_token_int [function] [call site] 02786
13 encode_token_match [function] [call site] 02787
13 encode_token_char [function] [call site] 02788
13 encode_token_char [function] [call site] 02789
13 encode_token_end [function] [call site] 02790
14 encode_token_type [function] [call site] 02791
13 realloc [call site] 02792
12 free_context [function] [call site] 02793
12 arith_compress_bound [function] [call site] 02794
12 free_context [function] [call site] 02795
12 compress [function] [call site] 02796
13 arith_encode [function] [call site] 02797
14 arith_compress_to [function] [call site] 02798
14 var_put_u32 [function] [call site] 02799
13 rans_encode [function] [call site] 02800
14 rans_compress_to_4x16 [function] [call site] 02801
14 var_put_u32 [function] [call site] 02802
12 free_context [function] [call site] 02803
12 memcmp [call site] 02804
12 free_context [function] [call site] 02805
12 free_context [function] [call site] 02806
10 pthread_mutex_lock [call site] 02807
10 pthread_mutex_unlock [call site] 02808
10 pthread_mutex_unlock [call site] 02809
10 cram_compress_by_method [function] [call site] 02810
10 cram_block_method2str [function] [call site] 02811
10 hts_log [function] [call site] 02812
10 pthread_mutex_lock [call site] 02813
10 pthread_mutex_unlock [call site] 02814
10 cram_compress_block3 [function] [call site] 02815
11 cram_compress_by_method [function] [call site] 02816
11 hts_log [function] [call site] 02817
11 cram_block_method2str [function] [call site] 02818
11 hts_log [function] [call site] 02819
8 pthread_mutex_lock [call site] 02820
8 pthread_mutex_unlock [call site] 02821
8 cram_compress_block2 [function] [call site] 02822
8 cram_compress_block2 [function] [call site] 02823
8 cram_compress_block2 [function] [call site] 02824
8 cram_compress_block2 [function] [call site] 02825
8 cram_compress_block2 [function] [call site] 02826
8 cram_compress_block2 [function] [call site] 02827
8 cram_compress_block2 [function] [call site] 02828
8 cram_compress_block2 [function] [call site] 02829
8 cram_compress_block2 [function] [call site] 02830
8 cram_compress_block2 [function] [call site] 02831
8 cram_compress_block2 [function] [call site] 02832
8 cram_compress_block2 [function] [call site] 02833
8 cram_compress_block2 [function] [call site] 02834
8 cram_compress_block2 [function] [call site] 02835
8 cram_compress_block2 [function] [call site] 02836
7 realloc [call site] 02837
7 cram_free_block [function] [call site] 02838
7 cram_encode_slice_header [function] [call site] 02839
8 cram_new_block [function] [call site] 02840
8 cram_free_block [function] [call site] 02841
8 cram_free_block [function] [call site] 02842
8 __assert_fail [call site] 02843
6 cram_encode_compression_header [function] [call site] 02844
7 cram_new_block [function] [call site] 02845
7 cram_new_block [function] [call site] 02846
7 itf8_put_blk [function] [call site] 02847
8 itf8_put [function] [call site] 02848
8 block_append [function] [call site] 02849
7 itf8_put_blk [function] [call site] 02850
7 itf8_put_blk [function] [call site] 02851
7 itf8_put_blk [function] [call site] 02852
7 itf8_put_blk [function] [call site] 02853
7 itf8_put_blk [function] [call site] 02854
7 kh_destroy_map [function] [call site] 02855
7 kh_init_map [function] [call site] 02856
8 calloc [call site] 02857
7 kh_put_map [function] [call site] 02858
8 kh_resize_map [function] [call site] 02859
9 realloc [call site] 02860
9 __ac_FNV1a_hash_string [function] [call site] 02861
8 strcmp [call site] 02862
7 kh_put_map [function] [call site] 02863
7 kh_put_map [function] [call site] 02864
7 kh_put_map [function] [call site] 02865
7 kh_put_map [function] [call site] 02866
7 kh_put_map [function] [call site] 02867
7 kh_put_map [function] [call site] 02868
7 kh_put_map [function] [call site] 02869
7 kh_put_map [function] [call site] 02870
7 block_append [function] [call site] 02871
7 block_append_char [function] [call site] 02872
7 sub_idx [function] [call site] 02873
7 sub_idx [function] [call site] 02874
7 sub_idx [function] [call site] 02875
7 sub_idx [function] [call site] 02876
7 sub_idx [function] [call site] 02877
7 sub_idx [function] [call site] 02878
7 sub_idx [function] [call site] 02879
7 sub_idx [function] [call site] 02880
7 sub_idx [function] [call site] 02881
7 sub_idx [function] [call site] 02882
7 sub_idx [function] [call site] 02883
7 sub_idx [function] [call site] 02884
7 sub_idx [function] [call site] 02885
7 sub_idx [function] [call site] 02886
7 sub_idx [function] [call site] 02887
7 sub_idx [function] [call site] 02888
7 sub_idx [function] [call site] 02889
7 sub_idx [function] [call site] 02890
7 sub_idx [function] [call site] 02891
7 sub_idx [function] [call site] 02892
7 block_append [function] [call site] 02893
7 block_append [function] [call site] 02894
7 hts_log [function] [call site] 02895
7 block_append [function] [call site] 02896
7 block_append [function] [call site] 02897
7 block_append [function] [call site] 02898
7 hts_log [function] [call site] 02899
7 cram_free_block [function] [call site] 02900
6 cram_ref_decr [function] [call site] 02901
6 cram_ref_decr [function] [call site] 02902
5 cram_flush_container2 [function] [call site] 02903
6 htell [function] [call site] 02904
6 cram_write_container [function] [call site] 02905
7 itf8_put [function] [call site] 02906
7 crc32 [call site] 02907
7 hwrite [function] [call site] 02908
6 htell [function] [call site] 02909
6 cram_write_block [function] [call site] 02910
7 __assert_fail [call site] 02911
7 hputc [function] [call site] 02912
8 hputc2 [function] [call site] 02913
9 flush_buffer [function] [call site] 02914
7 hputc [function] [call site] 02915
7 hwrite [function] [call site] 02916
7 hwrite [function] [call site] 02917
7 hwrite [function] [call site] 02918
7 __assert_fail [call site] 02919
7 crc32 [call site] 02920
7 crc32 [call site] 02921
7 crc32 [call site] 02922
7 int32_encode [function] [call site] 02923
8 hwrite [function] [call site] 02924
6 htell [function] [call site] 02925
6 cram_write_block [function] [call site] 02926
6 cram_write_block [function] [call site] 02927
6 htell [function] [call site] 02928
6 cram_index_slice [function] [call site] 02929
7 hts_log [function] [call site] 02930
7 cram_index_build_multiref [function] [call site] 02931
8 cram_decode_slice [function] [call site] 02932
9 cram_dependent_data_series [function] [call site] 02933
10 cram_uncompress_block [function] [call site] 02934
10 cram_uncompress_block [function] [call site] 02935
10 calloc [call site] 02936
10 cram_codec_to_id [function] [call site] 02937
11 cram_codec_to_id [function] [call site] 02938
12 cram_codec_to_id [function] [call site] 02939
13 hts_log [function] [call site] 02940
10 cram_uncompress_block [function] [call site] 02941
10 cram_codec_to_id [function] [call site] 02942
10 cram_uncompress_block [function] [call site] 02943
10 cram_codec_to_id [function] [call site] 02944
10 cram_codec_to_id [function] [call site] 02945
9 block_resize_exact [function] [call site] 02946
9 block_resize_exact [function] [call site] 02947
9 block_resize_exact [function] [call site] 02948
9 strcmp [call site] 02949
9 hts_log [function] [call site] 02950
9 cram_get_block_by_id [function] [call site] 02951
9 cram_uncompress_block [function] [call site] 02952
9 hts_log [function] [call site] 02953
9 cram_get_ref [function] [call site] 02954
9 hts_log [function] [call site] 02955
9 pthread_mutex_lock [call site] 02956
9 pthread_mutex_lock [call site] 02957
9 pthread_mutex_unlock [call site] 02958
9 pthread_mutex_unlock [call site] 02959
9 hts_log [function] [call site] 02960
9 memcmp [call site] 02961
9 hts_md5_init [function] [call site] 02962
9 hts_md5_update [function] [call site] 02963
9 hts_md5_final [function] [call site] 02964
9 hts_md5_destroy [function] [call site] 02965
9 cram_get_block_by_id [function] [call site] 02966
9 hts_md5_init [function] [call site] 02967
9 hts_md5_update [function] [call site] 02968
9 hts_md5_final [function] [call site] 02969
9 hts_md5_destroy [function] [call site] 02970
9 memcmp [call site] 02971
9 sam_hdr_tid2name [function] [call site] 02972
9 hts_log [function] [call site] 02973
9 md5_print [function] [call site] 02974
9 hts_log [function] [call site] 02975
9 md5_print [function] [call site] 02976
9 hts_log [function] [call site] 02977
9 sam_hdr_find_tag_id [function] [call site] 02978
10 sam_hdr_fill_hrecs [function] [call site] 02979
10 sam_hrecs_find_type_id [function] [call site] 02980
10 sam_hrecs_find_key [function] [call site] 02981
10 kputsn [function] [call site] 02982
9 hts_log [function] [call site] 02983
9 hts_log [function] [call site] 02984
9 ks_free [function] [call site] 02985
10 ks_initialize [function] [call site] 02986
9 pthread_mutex_lock [call site] 02987
9 pthread_mutex_lock [call site] 02988
9 calloc [call site] 02989
9 pthread_mutex_unlock [call site] 02990
9 pthread_mutex_unlock [call site] 02991
9 pthread_mutex_lock [call site] 02992
9 pthread_mutex_unlock [call site] 02993
9 cram_get_ref [function] [call site] 02994
9 pthread_mutex_lock [call site] 02995
9 pthread_mutex_unlock [call site] 02996
9 pthread_mutex_lock [call site] 02997
9 pthread_mutex_unlock [call site] 02998
9 cram_ref_decr [function] [call site] 02999
9 pthread_mutex_lock [call site] 03000
9 pthread_mutex_lock [call site] 03001
9 pthread_mutex_unlock [call site] 03002
9 pthread_mutex_unlock [call site] 03003
9 hts_log [function] [call site] 03004
9 hts_log [function] [call site] 03005
9 pthread_mutex_lock [call site] 03006
9 pthread_mutex_unlock [call site] 03007
9 cram_decode_tlen [function] [call site] 03008
9 cram_decode_tlen [function] [call site] 03009
9 cram_decode_tlen [function] [call site] 03010
9 cram_decode_aux_1_0 [function] [call site] 03011
10 map_find [function] [call site] 03012
10 block_append [function] [call site] 03013
9 cram_decode_aux [function] [call site] 03014
10 strlen [call site] 03015
10 sam_hdr_line_name [function] [call site] 03016
11 sam_hdr_fill_hrecs [function] [call site] 03017
11 hts_log [function] [call site] 03018
11 hts_log [function] [call site] 03019
11 hts_log [function] [call site] 03020
11 hts_log [function] [call site] 03021
10 strlen [call site] 03022
10 block_append [function] [call site] 03023
10 block_append [function] [call site] 03024
10 block_append_char [function] [call site] 03025
10 block_append [function] [call site] 03026
10 map_find [function] [call site] 03027
10 block_append [function] [call site] 03028
10 hts_log [function] [call site] 03029
9 block_resize [function] [call site] 03030
9 block_resize [function] [call site] 03031
9 hts_log [function] [call site] 03032
9 cram_decode_seq [function] [call site] 03033
10 block_append [function] [call site] 03034
10 realloc [call site] 03035
10 hts_log [function] [call site] 03036
10 hts_log [function] [call site] 03037
10 memchr [call site] 03038
10 add_md_char [function] [call site] 03039
11 block_append_uint [function] [call site] 03040
12 block_grow [function] [call site] 03041
12 append_uint32 [function] [call site] 03042
11 block_append_char [function] [call site] 03043
10 block_append_uint [function] [call site] 03044
10 add_md_char [function] [call site] 03045
10 block_append_uint [function] [call site] 03046
10 block_append_char [function] [call site] 03047
10 block_append [function] [call site] 03048
10 block_append_char [function] [call site] 03049
10 block_append [function] [call site] 03050
10 block_append_uint [function] [call site] 03051
10 block_append_uint [function] [call site] 03052
10 block_append_uint [function] [call site] 03053
10 block_append_char [function] [call site] 03054
10 block_append_uint [function] [call site] 03055
10 block_append_char [function] [call site] 03056
10 hts_log [function] [call site] 03057
10 hts_log [function] [call site] 03058
10 memchr [call site] 03059
10 add_md_char [function] [call site] 03060
10 realloc [call site] 03061
10 block_append_uint [function] [call site] 03062
10 realloc [call site] 03063
10 block_append_char [function] [call site] 03064
10 block_append [function] [call site] 03065
9 pthread_mutex_lock [call site] 03066
9 cram_ref_decr [function] [call site] 03067
9 cram_ref_decr [function] [call site] 03068
9 pthread_mutex_unlock [call site] 03069
9 cram_decode_slice_xref [function] [call site] 03070
10 hts_log [function] [call site] 03071
9 cram_free_block [function] [call site] 03072
9 block_resize_exact [function] [call site] 03073
9 block_resize_exact [function] [call site] 03074
9 block_resize_exact [function] [call site] 03075
9 block_resize_exact [function] [call site] 03076
9 pthread_mutex_lock [call site] 03077
9 cram_ref_decr [function] [call site] 03078
9 pthread_mutex_unlock [call site] 03079
8 hts_log [function] [call site] 03080
8 snprintf [call site] 03081
8 strlen [call site] 03082
8 bgzf_write [function] [call site] 03083
9 hwrite [function] [call site] 03084
9 __assert_fail [call site] 03085
9 lazy_flush [function] [call site] 03086
10 mt_queue [function] [call site] 03087
10 bgzf_flush [function] [call site] 03088
8 snprintf [call site] 03089
8 strlen [call site] 03090
8 bgzf_write [function] [call site] 03091
7 snprintf [call site] 03092
7 strlen [call site] 03093
7 bgzf_write [function] [call site] 03094
4 __errno_location [call site] 03095
4 hts_tpool_dispatch2 [function] [call site] 03096
5 hts_tpool_dispatch3 [function] [call site] 03097
4 cram_flush_thread [function] [call site] 03098
5 cram_encode_container [function] [call site] 03099
5 hts_log [function] [call site] 03100
4 __errno_location [call site] 03101
4 cram_flush_result [function] [call site] 03102
5 hts_tpool_next_result [function] [call site] 03103
6 pthread_mutex_lock [call site] 03104
6 hts_tpool_next_result_locked [function] [call site] 03105
6 pthread_mutex_unlock [call site] 03106
5 hts_tpool_result_data [function] [call site] 03107
5 hts_tpool_delete_result [function] [call site] 03108
5 cram_flush_container2 [function] [call site] 03109
5 cram_free_slice [function] [call site] 03110
5 cram_free_slice [function] [call site] 03111
5 cram_free_container [function] [call site] 03112
5 hts_tpool_delete_result [function] [call site] 03113
5 cram_free_container [function] [call site] 03114
4 hts_usleep [function] [call site] 03115
3 cram_drain_rqueue [function] [call site] 03116
3 hts_tpool_process_flush [function] [call site] 03117
3 cram_flush_result [function] [call site] 03118
3 hts_tpool_process_destroy [function] [call site] 03119
3 pthread_mutex_destroy [call site] 03120
3 pthread_mutex_destroy [call site] 03121
3 pthread_mutex_destroy [call site] 03122
3 pthread_mutex_destroy [call site] 03123
3 cram_write_eof_block [function] [call site] 03124
4 cram_encode_compression_header [function] [call site] 03125
4 cram_write_container [function] [call site] 03126
4 cram_write_block [function] [call site] 03127
4 cram_close [function] [call site] 03128
5 free_bam_list [function] [call site] 03129
5 hclose [function] [call site] 03130
5 cram_free_file_def [function] [call site] 03131
5 sam_hdr_destroy [function] [call site] 03132
5 cram_free_container [function] [call site] 03133
5 cram_free_container [function] [call site] 03134
5 refs_free [function] [call site] 03135
5 kh_destroy_m_metrics [function] [call site] 03136
5 cram_index_free [function] [call site] 03137
6 cram_index_free_recurse [function] [call site] 03138
7 cram_index_free_recurse [function] [call site] 03139
5 hts_tpool_destroy [function] [call site] 03140
5 bgzf_close [function] [call site] 03141
4 cram_free_block [function] [call site] 03142
4 kh_destroy_map [function] [call site] 03143
4 cram_free_block [function] [call site] 03144
2 sam_state_destroy [function] [call site] 03145
2 fastq_state_destroy [function] [call site] 03146
3 kh_destroy_tag [function] [call site] 03147
3 ks_free [function] [call site] 03148
4 ks_initialize [function] [call site] 03149
3 ks_free [function] [call site] 03150
3 ks_free [function] [call site] 03151
2 bgzf_close [function] [call site] 03152
2 hclose [function] [call site] 03153
2 hts_idx_close_otf_fp [function] [call site] 03154
3 need_idx_ugly_delay_hack [function] [call site] 03155
3 idx_write_uint64 [function] [call site] 03156
4 ed_is_big [function] [call site] 03157
4 ed_swap_8 [function] [call site] 03158
4 bgzf_write [function] [call site] 03159
3 bgzf_close [function] [call site] 03160
2 __errno_location [call site] 03161
2 sam_hdr_destroy [function] [call site] 03162
2 hts_idx_destroy [function] [call site] 03163
3 cram_index_free [function] [call site] 03164
3 kh_destroy_bin [function] [call site] 03165
2 hts_filter_free [function] [call site] 03166
2 __errno_location [call site] 03167
1 view_sam [function] [call site] 03168
2 abort [call site] 03169
2 hopen [function] [call site] 03170
2 hts_hopen [function] [call site] 03171
2 hclose [function] [call site] 03172
2 abort [call site] 03173
2 hts_open [function] [call site] 03174
3 hts_open_format [function] [call site] 03175
4 strncpy [call site] 03176
4 strchr [call site] 03177
4 strchr [call site] 03178
4 strchr [call site] 03179
4 strstr [call site] 03180
4 strdup [call site] 03181
4 hopen [function] [call site] 03182
4 hts_hopen [function] [call site] 03183
4 hts_opt_apply [function] [call site] 03184
4 __errno_location [call site] 03185
4 __errno_location [call site] 03186
4 __errno_location [call site] 03187
4 __errno_location [call site] 03188
4 strerror [call site] 03189
4 hts_log [function] [call site] 03190
4 hclose_abruptly [function] [call site] 03191
2 abort [call site] 03192
2 sam_hdr_read [function] [call site] 03193
3 __errno_location [call site] 03194
3 bam_hdr_read [function] [call site] 03195
4 bgzf_check_EOF [function] [call site] 03196
5 pthread_mutex_lock [call site] 03197
5 pthread_cond_signal [call site] 03198
5 hts_tpool_wake_dispatch [function] [call site] 03199
5 pthread_mutex_unlock [call site] 03200
5 pthread_cond_wait [call site] 03201
5 pthread_cond_signal [call site] 03202
5 abort [call site] 03203
5 pthread_mutex_unlock [call site] 03204
5 bgzf_check_EOF_common [function] [call site] 03205
6 htell [function] [call site] 03206
6 hseek [function] [call site] 03207
6 __errno_location [call site] 03208
6 hclearerr [function] [call site] 03209
6 __errno_location [call site] 03210
6 hclearerr [function] [call site] 03211
6 hread [function] [call site] 03212
6 hseek [function] [call site] 03213
6 memcmp [call site] 03214
4 perror [call site] 03215
4 hts_log [function] [call site] 03216
4 bgzf_read [function] [call site] 03217
4 memcmp [call site] 03218
4 sam_hdr_init [function] [call site] 03219
4 bgzf_read [function] [call site] 03220
4 le_to_u32 [function] [call site] 03221
4 bgzf_read [function] [call site] 03222
4 bgzf_read [function] [call site] 03223
4 ed_swap_4p [function] [call site] 03224
5 ed_swap_4 [function] [call site] 03225
4 calloc [call site] 03226
4 calloc [call site] 03227
4 bgzf_read [function] [call site] 03228
4 ed_swap_4p [function] [call site] 03229
4 bgzf_read [function] [call site] 03230
4 bgzf_read [function] [call site] 03231
4 ed_swap_4p [function] [call site] 03232
4 hts_log [function] [call site] 03233
4 hts_log [function] [call site] 03234
4 hts_log [function] [call site] 03235
4 sam_hdr_destroy [function] [call site] 03236
3 sam_hdr_sanitise [function] [call site] 03237
4 hts_log [function] [call site] 03238
4 sam_hdr_destroy [function] [call site] 03239
4 hts_log [function] [call site] 03240
4 sam_hdr_destroy [function] [call site] 03241
4 realloc [call site] 03242
4 sam_hdr_destroy [function] [call site] 03243
3 sam_hdr_dup [function] [call site] 03244
4 sam_hdr_init [function] [call site] 03245
4 calloc [call site] 03246
4 calloc [call site] 03247
4 strdup [call site] 03248
4 sam_hdr_dup_sdict [function] [call site] 03249
5 kh_init_s2i [function] [call site] 03250
5 kh_get_s2i [function] [call site] 03251
5 kh_put_s2i [function] [call site] 03252
5 kh_destroy_s2i [function] [call site] 03253
4 sam_hrecs_rebuild_text [function] [call site] 03254
5 kputsn [function] [call site] 03255
5 sam_hrecs_rebuild_lines [function] [call site] 03256
6 kputsn [function] [call site] 03257
6 build_header_line [function] [call site] 03258
7 kputc_ [function] [call site] 03259
7 kputsn [function] [call site] 03260
7 kputc_ [function] [call site] 03261
7 kputsn [function] [call site] 03262
6 kputc [function] [call site] 03263
4 ks_release [function] [call site] 03264
4 ks_release [function] [call site] 03265
4 sam_hdr_update_target_arrays [function] [call site] 03266
4 sam_hdr_destroy [function] [call site] 03267
3 sam_hdr_sanitise [function] [call site] 03268
3 sam_hdr_create [function] [call site] 03269
4 sam_hdr_init [function] [call site] 03270
4 kh_init_s2i [function] [call site] 03271
4 hts_getline [function] [call site] 03272
5 hts_log [function] [call site] 03273
5 abort [call site] 03274
5 kgetline2 [function] [call site] 03275
6 ks_resize [function] [call site] 03276
5 hgetln [function] [call site] 03277
5 herrno [function] [call site] 03278
5 __errno_location [call site] 03279
5 bgzf_getline [function] [call site] 03280
6 bgzf_read_block [function] [call site] 03281
6 memchr [call site] 03282
6 ks_expand [function] [call site] 03283
6 bgzf_htell [function] [call site] 03284
5 abort [call site] 03285
4 strncmp [call site] 03286
4 strncmp [call site] 03287
4 hts_log [function] [call site] 03288
4 calloc [call site] 03289
4 strncpy [call site] 03290
4 strncmp [call site] 03291
4 strtoll [call site] 03292
4 hts_log [function] [call site] 03293
4 kh_put_s2i [function] [call site] 03294
4 hts_log [function] [call site] 03295
4 kh_init_s2i [function] [call site] 03296
4 kh_put_s2i [function] [call site] 03297
4 hts_log [function] [call site] 03298
4 warn_if_known_stderr [function] [call site] 03299
5 strstr [call site] 03300
5 known_stderr [function] [call site] 03301
6 hts_log [function] [call site] 03302
6 hts_log [function] [call site] 03303
5 strstr [call site] 03304
5 known_stderr [function] [call site] 03305
5 strstr [call site] 03306
5 known_stderr [function] [call site] 03307
4 warn_if_known_stderr [function] [call site] 03308
4 valid_sam_header_type [function] [call site] 03309
4 hts_log [function] [call site] 03310
4 warn_if_known_stderr [function] [call site] 03311
4 kputsn [function] [call site] 03312
4 kputc [function] [call site] 03313
4 bgzf_peek [function] [call site] 03314
5 bgzf_read_block [function] [call site] 03315
5 hts_log [function] [call site] 03316
4 hpeek [function] [call site] 03317
4 strstr [call site] 03318
4 hopen [function] [call site] 03319
4 kgetline [function] [call site] 03320
5 strlen [call site] 03321
4 hgets [function] [call site] 03322
4 strchr [call site] 03323
4 calloc [call site] 03324
4 kh_put_s2i [function] [call site] 03325
4 strtoll [call site] 03326
4 hts_log [function] [call site] 03327
4 kh_init_s2i [function] [call site] 03328
4 kh_put_s2i [function] [call site] 03329
4 kputs [function] [call site] 03330
4 kputsn [function] [call site] 03331
4 kputs [function] [call site] 03332
4 kputll [function] [call site] 03333
4 kputc [function] [call site] 03334
4 ks_free [function] [call site] 03335
4 hclose [function] [call site] 03336
4 hts_log [function] [call site] 03337
4 kh_destroy_s2i [function] [call site] 03338
4 kputsn [function] [call site] 03339
4 ks_release [function] [call site] 03340
4 sam_hdr_sanitise [function] [call site] 03341
4 sam_hdr_destroy [function] [call site] 03342
4 ks_free [function] [call site] 03343
4 kh_destroy_s2i [function] [call site] 03344
4 kh_destroy_s2i [function] [call site] 03345
3 sam_hdr_init [function] [call site] 03346
3 __errno_location [call site] 03347
3 __errno_location [call site] 03348
2 hts_close_or_abort [function] [call site] 03349
3 hts_close [function] [call site] 03350
3 abort [call site] 03351
2 hts_close [function] [call site] 03352
2 hts_close [function] [call site] 03353
2 sam_hdr_count_lines [function] [call site] 03354
3 sam_hdr_fill_hrecs [function] [call site] 03355
3 sam_hrecs_find_type_id [function] [call site] 03356
2 sam_hdr_write [function] [call site] 03357
3 __errno_location [call site] 03358
3 bam_hdr_write [function] [call site] 03359
4 sam_hrecs_rebuild_text [function] [call site] 03360
4 hts_log [function] [call site] 03361
4 hts_log [function] [call site] 03362
4 hts_log [function] [call site] 03363
4 hts_log [function] [call site] 03364
4 hts_log [function] [call site] 03365
4 hts_log [function] [call site] 03366
4 bgzf_write [function] [call site] 03367
4 ed_swap_4 [function] [call site] 03368
4 bgzf_write [function] [call site] 03369
4 bgzf_write [function] [call site] 03370
4 ed_swap_4 [function] [call site] 03371
4 bgzf_write [function] [call site] 03372
4 bgzf_write [function] [call site] 03373
4 bgzf_write [function] [call site] 03374
4 bgzf_write [function] [call site] 03375
4 strlen [call site] 03376
4 ed_swap_4 [function] [call site] 03377
4 bgzf_write [function] [call site] 03378
4 bgzf_write [function] [call site] 03379
4 bgzf_write [function] [call site] 03380
4 ed_swap_4 [function] [call site] 03381
4 bgzf_write [function] [call site] 03382
4 bgzf_write [function] [call site] 03383
4 bgzf_flush [function] [call site] 03384
3 cram_set_header2 [function] [call site] 03385
4 sam_hdr_destroy [function] [call site] 03386
4 sam_hdr_dup [function] [call site] 03387
4 refs_from_header [function] [call site] 03388
3 cram_load_reference [function] [call site] 03389
3 cram_write_SAM_hdr [function] [call site] 03390
4 cram_write_file_def [function] [call site] 03391
5 hwrite [function] [call site] 03392
4 sam_hrecs_find_rg [function] [call site] 03393
4 sam_hdr_add_line [function] [call site] 03394
5 sam_hdr_fill_hrecs [function] [call site] 03395
5 sam_hrecs_vadd [function] [call site] 03396
5 rebuild_target_arrays [function] [call site] 03397
5 redact_header_text [function] [call site] 03398
4 refs_from_header [function] [call site] 03399
4 refs2id [function] [call site] 03400
4 sam_hrecs_find_type_id [function] [call site] 03401
4 sam_hrecs_find_key [function] [call site] 03402
4 cram_get_ref [function] [call site] 03403
4 hts_log [function] [call site] 03404
4 hts_log [function] [call site] 03405
4 hts_log [function] [call site] 03406
4 pthread_mutex_lock [call site] 03407
4 pthread_mutex_unlock [call site] 03408
4 hts_md5_init [function] [call site] 03409
4 hts_md5_update [function] [call site] 03410
4 hts_md5_final [function] [call site] 03411
4 hts_md5_destroy [function] [call site] 03412
4 cram_ref_decr [function] [call site] 03413
4 hts_md5_hex [function] [call site] 03414
4 sam_hdr_update_line [function] [call site] 03415
5 sam_hdr_fill_hrecs [function] [call site] 03416
5 sam_hrecs_find_type_id [function] [call site] 03417
5 check_for_name_update [function] [call site] 03418
6 TYPEKEY [function] [call site] 03419
6 TYPEKEY [function] [call site] 03420
6 TYPEKEY [function] [call site] 03421
6 sam_hrecs_find_key [function] [call site] 03422
6 __assert_fail [call site] 03423
6 strcmp [call site] 03424
6 strcmp [call site] 03425
6 kh_get_m_s2i [function] [call site] 03426
5 hts_log [function] [call site] 03427
5 TYPEKEY [function] [call site] 03428
5 hts_log [function] [call site] 03429
5 sam_hrecs_vupdate [function] [call site] 03430
5 kh_get_m_s2i [function] [call site] 03431
5 sam_hrecs_find_key [function] [call site] 03432
5 __assert_fail [call site] 03433
5 __assert_fail [call site] 03434
5 __assert_fail [call site] 03435
5 kh_del_m_s2i [function] [call site] 03436
5 kh_put_m_s2i [function] [call site] 03437
5 hts_log [function] [call site] 03438
5 TYPEKEY [function] [call site] 03439
5 sam_hrecs_update_hashes [function] [call site] 03440
5 rebuild_target_arrays [function] [call site] 03441
5 redact_header_text [function] [call site] 03442
4 full_path [function] [call site] 03443
5 strlen [call site] 03444
5 hisremote [function] [call site] 03445
5 hts_log [function] [call site] 03446
5 strncpy [call site] 03447
5 toupper_c [function] [call site] 03448
5 strncpy [call site] 03449
5 getcwd [call site] 03450
5 strlen [call site] 03451
5 strncpy [call site] 03452
5 snprintf [call site] 03453
4 sam_hdr_update_line [function] [call site] 03454
4 sam_hdr_length [function] [call site] 03455
5 sam_hdr_rebuild [function] [call site] 03456
6 rebuild_target_arrays [function] [call site] 03457
6 hts_log [function] [call site] 03458
6 sam_hdr_link_pg [function] [call site] 03459
7 sam_hdr_fill_hrecs [function] [call site] 03460
7 realloc [call site] 03461
7 calloc [call site] 03462
7 __assert_fail [call site] 03463
7 kh_get_m_s2i [function] [call site] 03464
7 hts_log [function] [call site] 03465
7 hts_log [function] [call site] 03466
7 redact_header_text [function] [call site] 03467
6 hts_log [function] [call site] 03468
6 sam_hrecs_rebuild_text [function] [call site] 03469
6 ks_free [function] [call site] 03470
6 hts_log [function] [call site] 03471
6 ks_len [function] [call site] 03472
6 ks_release [function] [call site] 03473
4 hts_log [function] [call site] 03474
4 int32_encode [function] [call site] 03475
4 sam_hdr_str [function] [call site] 03476
5 sam_hdr_rebuild [function] [call site] 03477
4 hwrite [function] [call site] 03478
4 cram_new_block [function] [call site] 03479
4 cram_new_container [function] [call site] 03480
5 calloc [call site] 03481
5 calloc [call site] 03482
5 cram_new_compression_header [function] [call site] 03483
6 calloc [call site] 03484
6 cram_new_block [function] [call site] 03485
6 kh_init_m_s2i [function] [call site] 03486
6 cram_free_block [function] [call site] 03487
6 string_pool_create [function] [call site] 03488
6 kh_destroy_m_s2i [function] [call site] 03489
6 cram_free_block [function] [call site] 03490
5 cram_stats_create [function] [call site] 03491
6 calloc [call site] 03492
5 kh_init_m_tagmap [function] [call site] 03493
6 calloc [call site] 03494
4 cram_free_block [function] [call site] 03495
4 cram_free_container [function] [call site] 03496
4 int32_put_blk [function] [call site] 03497
5 block_append [function] [call site] 03498
4 sam_hdr_str [function] [call site] 03499
4 block_append [function] [call site] 03500
4 cram_compress_block [function] [call site] 03501
5 cram_compress_block2 [function] [call site] 03502
4 cram_free_block [function] [call site] 03503
4 cram_free_container [function] [call site] 03504
4 calloc [call site] 03505
4 cram_free_block [function] [call site] 03506
4 cram_free_container [function] [call site] 03507
4 block_append [function] [call site] 03508
4 cram_write_container [function] [call site] 03509
4 cram_free_block [function] [call site] 03510
4 cram_free_container [function] [call site] 03511
4 cram_write_block [function] [call site] 03512
4 cram_free_block [function] [call site] 03513
4 cram_free_container [function] [call site] 03514
4 block_resize [function] [call site] 03515
4 cram_write_block [function] [call site] 03516
4 cram_free_block [function] [call site] 03517
4 cram_free_container [function] [call site] 03518
4 cram_free_block [function] [call site] 03519
4 cram_free_container [function] [call site] 03520
4 hflush [function] [call site] 03521
3 sam_hrecs_rebuild_text [function] [call site] 03522
3 strstr [call site] 03523
3 bgzf_write [function] [call site] 03524
3 hwrite [function] [call site] 03525
3 kputsn [function] [call site] 03526
3 kputs [function] [call site] 03527
3 kputsn [function] [call site] 03528
3 kputw [function] [call site] 03529
3 kputc [function] [call site] 03530
3 bgzf_write [function] [call site] 03531
3 hwrite [function] [call site] 03532
3 bgzf_flush [function] [call site] 03533
3 hflush [function] [call site] 03534
3 __errno_location [call site] 03535
2 bam_init1 [function] [call site] 03536
3 calloc [call site] 03537
2 sam_read1 [function] [call site] 03538
3 sam_read1_bam [function] [call site] 03539
4 bam_read1 [function] [call site] 03540
5 bgzf_read_small [function] [call site] 03541
6 bgzf_read [function] [call site] 03542
5 ed_swap_4p [function] [call site] 03543
5 bgzf_read [function] [call site] 03544
5 le_to_u32 [function] [call site] 03545
5 le_to_i32 [function] [call site] 03546
5 le_to_u32 [function] [call site] 03547
5 le_to_u32 [function] [call site] 03548
5 le_to_u32 [function] [call site] 03549
5 le_to_i32 [function] [call site] 03550
5 le_to_i32 [function] [call site] 03551
5 realloc_bam_data [function] [call site] 03552
6 sam_realloc_bam_data [function] [call site] 03553
7 __errno_location [call site] 03554
7 __errno_location [call site] 03555
7 bam_get_mempolicy [function] [call site] 03556
7 realloc [call site] 03557
7 bam_get_mempolicy [function] [call site] 03558
7 bam_set_mempolicy [function] [call site] 03559
5 bgzf_read_small [function] [call site] 03560
5 fixup_missing_qname_nul [function] [call site] 03561
6 realloc_bam_data [function] [call site] 03562
5 bgzf_read_small [function] [call site] 03563
5 swap_data [function] [call site] 03564
6 ed_swap_4p [function] [call site] 03565
5 bam_tag2cigar [function] [call site] 03566
6 bam_aux_get [function] [call site] 03567
6 __errno_location [call site] 03568
6 __errno_location [call site] 03569
6 __errno_location [call site] 03570
6 le_to_u32 [function] [call site] 03571
6 possibly_expand_bam_data [function] [call site] 03572
7 __errno_location [call site] 03573
7 sam_realloc_bam_data [function] [call site] 03574
6 bam_endpos [function] [call site] 03575
7 bam_cigar2rlen [function] [call site] 03576
6 hts_reg2bin [function] [call site] 03577
6 hts_log [function] [call site] 03578
5 bam_cigar2rqlens [function] [call site] 03579
5 hts_reg2bin [function] [call site] 03580
5 hts_log [function] [call site] 03581
4 __errno_location [call site] 03582
3 sam_read1_cram [function] [call site] 03583
4 cram_get_bam_seq [function] [call site] 03584
5 cram_get_seq [function] [call site] 03585
6 cram_next_slice [function] [call site] 03586
7 cram_first_slice [function] [call site] 03587
8 cram_free_container [function] [call site] 03588
8 cram_read_container [function] [call site] 03589
8 cram_seek [function] [call site] 03590
8 cram_free_container [function] [call site] 03591
8 cram_read_container [function] [call site] 03592
8 cram_read_block [function] [call site] 03593
8 cram_decode_compression_header [function] [call site] 03594
9 calloc [call site] 03595
9 cram_uncompress_block [function] [call site] 03596
9 kh_init_map [function] [call site] 03597
9 cram_free_compression_header [function] [call site] 03598
9 cram_free_compression_header [function] [call site] 03599
9 kh_put_map [function] [call site] 03600
9 cram_free_compression_header [function] [call site] 03601
9 kh_put_map [function] [call site] 03602
9 cram_free_compression_header [function] [call site] 03603
9 kh_put_map [function] [call site] 03604
9 cram_free_compression_header [function] [call site] 03605
9 kh_put_map [function] [call site] 03606
9 cram_free_compression_header [function] [call site] 03607
9 cram_free_compression_header [function] [call site] 03608
9 kh_put_map [function] [call site] 03609
9 cram_free_compression_header [function] [call site] 03610
9 cram_decode_TD [function] [call site] 03611
10 cram_new_block [function] [call site] 03612
10 hts_log [function] [call site] 03613
10 cram_free_block [function] [call site] 03614
10 cram_free_block [function] [call site] 03615
10 cram_free_block [function] [call site] 03616
10 block_append [function] [call site] 03617
10 block_append_char [function] [call site] 03618
10 calloc [call site] 03619
10 cram_free_block [function] [call site] 03620
10 cram_free_block [function] [call site] 03621
9 cram_free_compression_header [function] [call site] 03622
9 kh_put_map [function] [call site] 03623
9 cram_free_compression_header [function] [call site] 03624
9 hts_log [function] [call site] 03625
9 cram_free_compression_header [function] [call site] 03626
9 cram_free_compression_header [function] [call site] 03627
9 cram_free_compression_header [function] [call site] 03628
9 hts_log [function] [call site] 03629
9 hts_log [function] [call site] 03630
9 cram_decoder_init [function] [call site] 03631
10 cram_encoding2str [function] [call site] 03632
10 hts_log [function] [call site] 03633
9 cram_free_compression_header [function] [call site] 03634
9 cram_free_compression_header [function] [call site] 03635
9 cram_free_compression_header [function] [call site] 03636
9 cram_free_compression_header [function] [call site] 03637
9 cram_decoder_init [function] [call site] 03638
9 cram_free_compression_header [function] [call site] 03639
9 cram_free_compression_header [function] [call site] 03640
8 sam_hrecs_sort_order [function] [call site] 03641
9 TYPEKEY [function] [call site] 03642
9 kh_get_sam_hrecs_t [function] [call site] 03643
9 strcmp [call site] 03644
9 strcmp [call site] 03645
9 strcmp [call site] 03646
9 strcmp [call site] 03647
9 hts_log [function] [call site] 03648
8 pthread_mutex_lock [call site] 03649
8 pthread_mutex_unlock [call site] 03650
7 cram_free_slice [function] [call site] 03651
7 cram_free_container [function] [call site] 03652
7 cram_read_container [function] [call site] 03653
7 cram_free_container [function] [call site] 03654
7 cram_free_container [function] [call site] 03655
7 cram_free_container [function] [call site] 03656
7 cram_seek [function] [call site] 03657
7 cram_free_container [function] [call site] 03658
7 cram_read_block [function] [call site] 03659
7 cram_decode_compression_header [function] [call site] 03660
7 sam_hrecs_sort_order [function] [call site] 03661
7 pthread_mutex_lock [call site] 03662
7 pthread_mutex_unlock [call site] 03663
7 cram_free_container [function] [call site] 03664
7 cram_read_slice [function] [call site] 03665
8 cram_read_block [function] [call site] 03666
8 calloc [call site] 03667
8 cram_decode_slice_header [function] [call site] 03668
9 cram_uncompress_block [function] [call site] 03669
9 calloc [call site] 03670
9 hts_log [function] [call site] 03671
8 cram_content_type2str [function] [call site] 03672
8 hts_log [function] [call site] 03673
8 hts_log [function] [call site] 03674
8 calloc [call site] 03675
8 cram_read_block [function] [call site] 03676
8 calloc [call site] 03677
8 cram_new_block [function] [call site] 03678
8 cram_new_block [function] [call site] 03679
8 cram_new_block [function] [call site] 03680
8 cram_new_block [function] [call site] 03681
8 cram_new_block [function] [call site] 03682
8 cram_new_block [function] [call site] 03683
8 cram_free_block [function] [call site] 03684
8 cram_free_slice [function] [call site] 03685
7 cram_free_slice [function] [call site] 03686
7 cram_free_slice [function] [call site] 03687
7 cram_free_slice [function] [call site] 03688
7 cram_decode_slice_mt [function] [call site] 03689
8 cram_decode_slice [function] [call site] 03690
8 hts_tpool_process_sz [function] [call site] 03691
9 pthread_mutex_lock [call site] 03692
9 pthread_mutex_unlock [call site] 03693
8 __errno_location [call site] 03694
8 __errno_location [call site] 03695
8 hts_tpool_dispatch2 [function] [call site] 03696
8 cram_decode_slice_thread [function] [call site] 03697
9 cram_decode_slice [function] [call site] 03698
8 __errno_location [call site] 03699
8 __errno_location [call site] 03700
7 hts_log [function] [call site] 03701
7 cram_free_slice [function] [call site] 03702
7 hts_tpool_process_len [function] [call site] 03703
8 pthread_mutex_lock [call site] 03704
8 pthread_mutex_unlock [call site] 03705
7 hts_tpool_process_qsize [function] [call site] 03706
7 hts_tpool_process_empty [function] [call site] 03707
7 hts_tpool_next_result_wait [function] [call site] 03708
7 hts_tpool_result_data [function] [call site] 03709
7 hts_log [function] [call site] 03710
7 hts_tpool_result_data [function] [call site] 03711
7 hts_log [function] [call site] 03712
7 hts_tpool_delete_result [function] [call site] 03713
7 hts_tpool_delete_result [function] [call site] 03714
6 cram_free_slice [function] [call site] 03715
6 cram_free_slice [function] [call site] 03716
5 cram_to_bam [function] [call site] 03717
6 strlen [call site] 03718
6 append_uint64 [function] [call site] 03719
7 append_uint32 [function] [call site] 03720
7 append_uint32 [function] [call site] 03721
7 append_sub32 [function] [call site] 03722
7 append_uint32 [function] [call site] 03723
7 append_sub32 [function] [call site] 03724
6 append_uint64 [function] [call site] 03725
6 bam_set1 [function] [call site] 03726
7 bam_cigar2rqlens [function] [call site] 03727
7 hts_log [function] [call site] 03728
7 __errno_location [call site] 03729
7 hts_log [function] [call site] 03730
7 __errno_location [call site] 03731
7 hts_log [function] [call site] 03732
7 __errno_location [call site] 03733
7 hts_log [function] [call site] 03734
7 __errno_location [call site] 03735
7 subtract_check_underflow [function] [call site] 03736
7 subtract_check_underflow [function] [call site] 03737
7 subtract_check_underflow [function] [call site] 03738
7 subtract_check_underflow [function] [call site] 03739
7 subtract_check_underflow [function] [call site] 03740
7 hts_log [function] [call site] 03741
7 __errno_location [call site] 03742
7 realloc_bam_data [function] [call site] 03743
7 hts_reg2bin [function] [call site] 03744
7 strncpy [call site] 03745
4 cram_eof [function] [call site] 03746
4 bam_tag2cigar [function] [call site] 03747
3 sam_read1_sam [function] [call site] 03748
4 sam_parse1 [function] [call site] 03749
5 strchr [call site] 03750
5 hts_log [function] [call site] 03751
5 hts_log [function] [call site] 03752
5 possibly_expand_bam_data [function] [call site] 03753
5 parse_sam_flag [function] [call site] 03754
6 hts_str2uint [function] [call site] 03755
6 strtoul [call site] 03756
5 strchr [call site] 03757
5 strcmp [call site] 03758
5 hts_log [function] [call site] 03759
5 bam_name2id [function] [call site] 03760
6 sam_hdr_name2tid [function] [call site] 03761
7 sam_hdr_fill_hrecs [function] [call site] 03762
7 kh_get_m_s2i [function] [call site] 03763
5 hts_log [function] [call site] 03764
5 hts_strprint [function] [call site] 03765
6 isprint_c [function] [call site] 03766
7 __ctype_b_loc [call site] 03767
6 strcpy [call site] 03768
6 snprintf [call site] 03769
5 hts_log [function] [call site] 03770
5 hts_str2uint [function] [call site] 03771
5 hts_log [function] [call site] 03772
5 hts_str2uint [function] [call site] 03773
5 bam_parse_cigar [function] [call site] 03774
6 hts_log [function] [call site] 03775
6 read_ncigar [function] [call site] 03776
7 isdigit_c [function] [call site] 03777
7 hts_log [function] [call site] 03778
7 hts_log [function] [call site] 03779
6 possibly_expand_bam_data [function] [call site] 03780
6 hts_log [function] [call site] 03781
6 parse_cigar [function] [call site] 03782
7 hts_str2uint [function] [call site] 03783
7 hts_log [function] [call site] 03784
7 hts_log [function] [call site] 03785
7 hts_log [function] [call site] 03786
5 bam_cigar2rlen [function] [call site] 03787
5 hts_log [function] [call site] 03788
5 strchr [call site] 03789
5 hts_log [function] [call site] 03790
5 hts_reg2bin [function] [call site] 03791
5 strchr [call site] 03792
5 strcmp [call site] 03793
5 strcmp [call site] 03794
5 bam_name2id [function] [call site] 03795
5 hts_log [function] [call site] 03796
5 hts_strprint [function] [call site] 03797
5 hts_log [function] [call site] 03798
5 hts_str2uint [function] [call site] 03799
5 hts_log [function] [call site] 03800
5 hts_str2int [function] [call site] 03801
5 hts_log [function] [call site] 03802
5 strchr [call site] 03803
5 strcmp [call site] 03804
5 hts_log [function] [call site] 03805
5 bam_cigar2qlen [function] [call site] 03806
5 hts_log [function] [call site] 03807
5 possibly_expand_bam_data [function] [call site] 03808
5 possibly_expand_bam_data [function] [call site] 03809
5 hts_log [function] [call site] 03810
5 hts_log [function] [call site] 03811
5 aux_parse [function] [call site] 03812
6 hts_log [function] [call site] 03813
6 isspace_c [function] [call site] 03814
6 hts_log [function] [call site] 03815
6 isspace_c [function] [call site] 03816
6 isspace_c [function] [call site] 03817
6 kh_get_tag [function] [call site] 03818
6 possibly_expand_bam_data [function] [call site] 03819
6 isspace_c [function] [call site] 03820
6 hts_log [function] [call site] 03821
6 possibly_expand_bam_data [function] [call site] 03822
6 hts_str2int [function] [call site] 03823
6 i16_to_le [function] [call site] 03824
7 u16_to_le [function] [call site] 03825
6 i32_to_le [function] [call site] 03826
7 u32_to_le [function] [call site] 03827
6 hts_str2uint [function] [call site] 03828
6 u16_to_le [function] [call site] 03829
6 u32_to_le [function] [call site] 03830
6 strtod [call site] 03831
6 float_to_le [function] [call site] 03832
7 u32_to_le [function] [call site] 03833
6 strtod [call site] 03834
6 double_to_le [function] [call site] 03835
7 u64_to_le [function] [call site] 03836
6 strchr [call site] 03837
6 strlen [call site] 03838
6 isspace_c [function] [call site] 03839
6 hts_log [function] [call site] 03840
6 possibly_expand_bam_data [function] [call site] 03841
6 isspace_c [function] [call site] 03842
6 hts_log [function] [call site] 03843
6 sam_parse_B_vals [function] [call site] 03844
7 sam_parse_B_vals_r [function] [call site] 03845
8 hts_log [function] [call site] 03846
8 aux_type2size [function] [call site] 03847
8 hts_log [function] [call site] 03848
8 possibly_expand_bam_data [function] [call site] 03849
8 hts_log [function] [call site] 03850
8 sam_parse_Bc_vals [function] [call site] 03851
9 grow_B_array [function] [call site] 03852
10 __errno_location [call site] 03853
10 possibly_expand_bam_data [function] [call site] 03854
10 hts_log [function] [call site] 03855
9 hts_str2int [function] [call site] 03856
8 sam_parse_BC_vals [function] [call site] 03857
9 grow_B_array [function] [call site] 03858
9 hts_str2uint [function] [call site] 03859
8 sam_parse_Bs_vals [function] [call site] 03860
9 grow_B_array [function] [call site] 03861
9 hts_str2int [function] [call site] 03862
9 i16_to_le [function] [call site] 03863
8 sam_parse_BS_vals [function] [call site] 03864
9 grow_B_array [function] [call site] 03865
9 hts_str2uint [function] [call site] 03866
9 u16_to_le [function] [call site] 03867
8 sam_parse_Bi_vals [function] [call site] 03868
9 grow_B_array [function] [call site] 03869
9 hts_str2int [function] [call site] 03870
9 i32_to_le [function] [call site] 03871
8 sam_parse_BI_vals [function] [call site] 03872
9 grow_B_array [function] [call site] 03873
9 hts_str2uint [function] [call site] 03874
9 u32_to_le [function] [call site] 03875
8 sam_parse_Bf_vals [function] [call site] 03876
9 grow_B_array [function] [call site] 03877
9 strtod [call site] 03878
9 float_to_le [function] [call site] 03879
8 hts_log [function] [call site] 03880
8 i32_to_le [function] [call site] 03881
8 hts_str2int [function] [call site] 03882
8 sam_parse_B_vals_r [function] [call site] 03883
9 sam_parse_B_vals_r [function] [call site] 03884
10 sam_parse_B_vals_r [function] [call site] 03885
11 sam_parse_B_vals_r [function] [call site] 03886
12 sam_parse_B_vals_r [function] [call site] 03887
13 sam_parse_B_vals_r [function] [call site] 03888
14 hts_log [function] [call site] 03889
6 isspace_c [function] [call site] 03890
6 hts_strprint [function] [call site] 03891
6 hts_log [function] [call site] 03892
6 isspace_c [function] [call site] 03893
6 hts_log [function] [call site] 03894
5 bam_tag2cigar [function] [call site] 03895
4 sam_state_destroy [function] [call site] 03896
4 __errno_location [call site] 03897
4 bgzf_seek [function] [call site] 03898
5 bgzf_seek_common [function] [call site] 03899
4 sam_hdr_fill_hrecs [function] [call site] 03900
4 pthread_create [call site] 03901
4 sam_dispatcher_read [function] [call site] 03902
5 ks_resize [function] [call site] 03903
5 pthread_mutex_lock [call site] 03904
5 pthread_cond_signal [call site] 03905
5 pthread_mutex_unlock [call site] 03906
5 hts_tpool_process_shutdown [function] [call site] 03907
5 pthread_mutex_unlock [call site] 03908
5 pthread_mutex_lock [call site] 03909
5 pthread_mutex_unlock [call site] 03910
5 calloc [call site] 03911
5 realloc [call site] 03912
5 bgzf_read [function] [call site] 03913
5 hread [function] [call site] 03914
5 __errno_location [call site] 03915
5 sam_state_err [function] [call site] 03916
5 realloc [call site] 03917
5 __assert_fail [call site] 03918
5 __assert_fail [call site] 03919
5 __assert_fail [call site] 03920
5 ks_resize [function] [call site] 03921
5 hts_tpool_dispatch3 [function] [call site] 03922
5 sam_parse_worker [function] [call site] 03923
6 pthread_mutex_lock [call site] 03924
6 pthread_mutex_unlock [call site] 03925
6 calloc [call site] 03926
6 calloc [call site] 03927
6 sam_state_err [function] [call site] 03928
6 sam_state_err [function] [call site] 03929
6 realloc [call site] 03930
6 sam_state_err [function] [call site] 03931
6 strchr [call site] 03932
6 sam_parse1 [function] [call site] 03933
6 __errno_location [call site] 03934
6 sam_state_err [function] [call site] 03935
6 cleanup_sp_lines [function] [call site] 03936
7 __assert_fail [call site] 03937
7 sam_free_sp_bams [function] [call site] 03938
6 pthread_mutex_lock [call site] 03939
6 pthread_mutex_unlock [call site] 03940
6 sam_free_sp_bams [function] [call site] 03941
5 cleanup_sp_lines [function] [call site] 03942
5 cleanup_sp_bams [function] [call site] 03943
6 sam_free_sp_bams [function] [call site] 03944
5 pthread_mutex_lock [call site] 03945
5 pthread_mutex_unlock [call site] 03946
5 pthread_mutex_unlock [call site] 03947
5 hts_tpool_dispatch [function] [call site] 03948
5 sam_parse_eof [function] [call site] 03949
5 pthread_mutex_lock [call site] 03950
5 pthread_cond_wait [call site] 03951
5 pthread_cond_signal [call site] 03952
5 pthread_mutex_unlock [call site] 03953
5 hts_tpool_process_shutdown [function] [call site] 03954
5 pthread_mutex_unlock [call site] 03955
5 pthread_mutex_lock [call site] 03956
5 pthread_cond_signal [call site] 03957
5 pthread_mutex_unlock [call site] 03958
5 pthread_mutex_lock [call site] 03959
5 pthread_mutex_unlock [call site] 03960
5 __errno_location [call site] 03961
5 sam_state_err [function] [call site] 03962
5 hts_tpool_process_shutdown [function] [call site] 03963
4 hts_log [function] [call site] 03964
4 __errno_location [call site] 03965
4 pthread_mutex_lock [call site] 03966
4 pthread_mutex_unlock [call site] 03967
4 hts_tpool_next_result_wait [function] [call site] 03968
4 hts_tpool_result_data [function] [call site] 03969
4 hts_tpool_delete_result [function] [call site] 03970
4 pthread_mutex_lock [call site] 03971
4 pthread_mutex_unlock [call site] 03972
4 bam_copy1 [function] [call site] 03973
5 realloc_bam_data [function] [call site] 03974
4 pthread_mutex_lock [call site] 03975
4 pthread_mutex_unlock [call site] 03976
4 hts_getline [function] [call site] 03977
4 sam_parse1 [function] [call site] 03978
4 hts_log [function] [call site] 03979
3 fastq_state_init [function] [call site] 03980
3 fastq_parse1 [function] [call site] 03981
4 hts_getline [function] [call site] 03982
4 strpbrk [call site] 03983
4 isspace_c [function] [call site] 03984
4 isspace_c [function] [call site] 03985
4 hts_getline [function] [call site] 03986
4 kputsn [function] [call site] 03987
4 hts_getline [function] [call site] 03988
4 kputsn [function] [call site] 03989
4 isdigit_c [function] [call site] 03990
4 bam_set1 [function] [call site] 03991
4 isdigit_c [function] [call site] 03992
4 strtol [call site] 03993
4 isdigit_c [function] [call site] 03994
4 isspace_c [function] [call site] 03995
4 bam_aux_append [function] [call site] 03996
5 __assert_fail [call site] 03997
5 realloc_bam_data [function] [call site] 03998
5 __errno_location [call site] 03999
4 aux_parse [function] [call site] 04000
3 __errno_location [call site] 04001
3 __errno_location [call site] 04002
3 sam_passes_filter [function] [call site] 04003
4 hts_filter_eval2 [function] [call site] 04004
5 ks_free [function] [call site] 04005
5 hts_filter_eval_ [function] [call site] 04006
6 expression [function] [call site] 04007
7 and_expr [function] [call site] 04008
8 eq_expr [function] [call site] 04009
9 cmp_expr [function] [call site] 04010
10 bitor_expr [function] [call site] 04011
11 bitxor_expr [function] [call site] 04012
12 bitand_expr [function] [call site] 04013
13 add_expr [function] [call site] 04014
14 mul_expr [function] [call site] 04015
15 unary_expr [function] [call site] 04016
16 ws [function] [call site] 04017
16 simple_expr [function] [call site] 04018
17 ws [function] [call site] 04019
17 expression [function] [call site] 04020
17 ws [function] [call site] 04021
17 fprintf [call site] 04022
17 hts_str2dbl [function] [call site] 04023
18 __ctype_b_loc [call site] 04024
18 strtod [call site] 04025
18 strtod [call site] 04026
17 ks_clear [function] [call site] 04027
17 kputsn [function] [call site] 04028
17 func_expr [function] [call site] 04029
18 strncmp [call site] 04030
18 expression [function] [call site] 04031
18 expr_func_avg [function] [call site] 04032
18 strncmp [call site] 04033
18 expression [function] [call site] 04034
18 ws [function] [call site] 04035
18 expression [function] [call site] 04036
18 hts_expr_val_existsT [function] [call site] 04037
19 hts_expr_val_exists [function] [call site] 04038
18 hts_expr_val_free [function] [call site] 04039
19 ks_free [function] [call site] 04040
18 strncmp [call site] 04041
18 expression [function] [call site] 04042
18 hts_expr_val_existsT [function] [call site] 04043
18 strncmp [call site] 04044
18 expression [function] [call site] 04045
18 exp [call site] 04046
18 hts_expr_val_undef [function] [call site] 04047
19 ks_clear [function] [call site] 04048
18 strncmp [call site] 04049
18 expression [function] [call site] 04050
18 expr_func_length [function] [call site] 04051
18 strncmp [call site] 04052
18 expression [function] [call site] 04053
18 log [call site] 04054
18 hts_expr_val_undef [function] [call site] 04055
18 strncmp [call site] 04056
18 expression [function] [call site] 04057
18 expr_func_min [function] [call site] 04058
18 strncmp [call site] 04059
18 expression [function] [call site] 04060
18 expr_func_max [function] [call site] 04061
18 strncmp [call site] 04062
18 expression [function] [call site] 04063
18 ws [function] [call site] 04064
18 expression [function] [call site] 04065
18 hts_expr_val_exists [function] [call site] 04066
18 hts_expr_val_undef [function] [call site] 04067
18 hts_expr_val_free [function] [call site] 04068
18 pow [call site] 04069
18 hts_expr_val_free [function] [call site] 04070
18 hts_expr_val_undef [function] [call site] 04071
18 strncmp [call site] 04072
18 expression [function] [call site] 04073
18 sqrt [call site] 04074
18 hts_expr_val_undef [function] [call site] 04075
18 ws [function] [call site] 04076
18 fprintf [call site] 04077
16 hts_expr_val_exists [function] [call site] 04078
16 hts_expr_val_undef [function] [call site] 04079
16 unary_expr [function] [call site] 04080
17 hts_expr_val_exists [function] [call site] 04081
17 unary_expr [function] [call site] 04082
18 hts_expr_val_exists [function] [call site] 04083
18 hts_expr_val_undef [function] [call site] 04084
18 hts_expr_val_exists [function] [call site] 04085
18 hts_expr_val_undef [function] [call site] 04086
18 simple_expr [function] [call site] 04087
15 ws [function] [call site] 04088
15 unary_expr [function] [call site] 04089
15 hts_expr_val_exists [function] [call site] 04090
15 hts_expr_val_undef [function] [call site] 04091
15 hts_expr_val_free [function] [call site] 04092
15 hts_expr_val_undef [function] [call site] 04093
15 hts_expr_val_exists [function] [call site] 04094
15 hts_expr_val_free [function] [call site] 04095
14 ws [function] [call site] 04096
14 mul_expr [function] [call site] 04097
14 hts_expr_val_exists [function] [call site] 04098
14 hts_expr_val_free [function] [call site] 04099
14 hts_expr_val_undef [function] [call site] 04100
14 hts_expr_val_free [function] [call site] 04101
13 ws [function] [call site] 04102
13 add_expr [function] [call site] 04103
13 hts_expr_val_exists [function] [call site] 04104
13 hts_expr_val_free [function] [call site] 04105
13 hts_expr_val_free [function] [call site] 04106
13 hts_expr_val_undef [function] [call site] 04107
12 ws [function] [call site] 04108
12 bitand_expr [function] [call site] 04109
12 hts_expr_val_exists [function] [call site] 04110
12 hts_expr_val_free [function] [call site] 04111
12 hts_expr_val_free [function] [call site] 04112
12 hts_expr_val_undef [function] [call site] 04113
11 ws [function] [call site] 04114
11 bitxor_expr [function] [call site] 04115
11 hts_expr_val_exists [function] [call site] 04116
11 hts_expr_val_free [function] [call site] 04117
11 hts_expr_val_free [function] [call site] 04118
11 hts_expr_val_undef [function] [call site] 04119
10 ws [function] [call site] 04120
10 cmp_expr [function] [call site] 04121
11 hts_expr_val_exists [function] [call site] 04122
11 hts_expr_val_undef [function] [call site] 04123
11 strcmp [call site] 04124
11 cmp_expr [function] [call site] 04125
12 hts_expr_val_exists [function] [call site] 04126
12 hts_expr_val_undef [function] [call site] 04127
12 strcmp [call site] 04128
12 cmp_expr [function] [call site] 04129
13 hts_expr_val_exists [function] [call site] 04130
13 hts_expr_val_undef [function] [call site] 04131
13 strcmp [call site] 04132
13 cmp_expr [function] [call site] 04133
14 hts_expr_val_exists [function] [call site] 04134
14 hts_expr_val_undef [function] [call site] 04135
14 strcmp [call site] 04136
14 hts_expr_val_exists [function] [call site] 04137
14 hts_expr_val_undef [function] [call site] 04138
14 hts_expr_val_free [function] [call site] 04139
9 ws [function] [call site] 04140
9 eq_expr [function] [call site] 04141
10 hts_expr_val_exists [function] [call site] 04142
10 hts_expr_val_undef [function] [call site] 04143
10 strcmp [call site] 04144
10 eq_expr [function] [call site] 04145
11 hts_expr_val_exists [function] [call site] 04146
11 hts_expr_val_undef [function] [call site] 04147
11 strcmp [call site] 04148
11 eq_expr [function] [call site] 04149
12 hts_expr_val_free [function] [call site] 04150
12 regcomp [call site] 04151
12 regerror [call site] 04152
12 fprintf [call site] 04153
12 hts_expr_val_free [function] [call site] 04154
12 regexec [call site] 04155
12 regfree [call site] 04156
12 hts_expr_val_exists [function] [call site] 04157
12 hts_expr_val_undef [function] [call site] 04158
12 hts_expr_val_free [function] [call site] 04159
8 ws [function] [call site] 04160
8 eq_expr [function] [call site] 04161
8 hts_expr_val_existsT [function] [call site] 04162
8 hts_expr_val_undef [function] [call site] 04163
8 eq_expr [function] [call site] 04164
8 hts_expr_val_existsT [function] [call site] 04165
8 hts_expr_val_undef [function] [call site] 04166
8 hts_expr_val_existsT [function] [call site] 04167
8 hts_expr_val_undef [function] [call site] 04168
8 hts_expr_val_existsT [function] [call site] 04169
8 hts_expr_val_undef [function] [call site] 04170
8 hts_expr_val_free [function] [call site] 04171
6 ws [function] [call site] 04172
6 fprintf [call site] 04173
6 hts_expr_val_exists [function] [call site] 04174
4 bam_sym_lookup [function] [call site] 04175
5 memcmp [call site] 04176
5 ks_clear [function] [call site] 04177
5 kputw [function] [call site] 04178
5 kputc_ [function] [call site] 04179
5 kputs [function] [call site] 04180
5 kputs [function] [call site] 04181
5 memcmp [call site] 04182
5 bam_endpos [function] [call site] 04183
5 memcmp [call site] 04184
5 memcmp [call site] 04185
5 memcmp [call site] 04186
5 memcmp [call site] 04187
5 memcmp [call site] 04188
5 memcmp [call site] 04189
5 memcmp [call site] 04190
5 memcmp [call site] 04191
5 memcmp [call site] 04192
5 memcmp [call site] 04193
5 memcmp [call site] 04194
5 memcmp [call site] 04195
5 memcmp [call site] 04196
5 hts_log [function] [call site] 04197
5 memcmp [call site] 04198
5 memcmp [call site] 04199
5 bam_get_library [function] [call site] 04200
6 bam_aux_get [function] [call site] 04201
6 sam_hdr_find_tag_id [function] [call site] 04202
5 ks_clear [function] [call site] 04203
5 kputs [function] [call site] 04204
5 memcmp [call site] 04205
5 memcmp [call site] 04206
5 memcmp [call site] 04207
5 sam_hdr_tid2name [function] [call site] 04208
5 ks_clear [function] [call site] 04209
5 kputs [function] [call site] 04210
5 memcmp [call site] 04211
5 memcmp [call site] 04212
5 memcmp [call site] 04213
5 memcmp [call site] 04214
5 memcmp [call site] 04215
5 bam_cigar2qlen [function] [call site] 04216
5 memcmp [call site] 04217
5 ks_clear [function] [call site] 04218
5 kputs [function] [call site] 04219
5 memcmp [call site] 04220
5 ks_clear [function] [call site] 04221
5 ks_resize [function] [call site] 04222
5 memcmp [call site] 04223
5 bam_cigar2rlen [function] [call site] 04224
5 memcmp [call site] 04225
5 sam_hdr_tid2name [function] [call site] 04226
5 ks_clear [function] [call site] 04227
5 kputs [function] [call site] 04228
5 memcmp [call site] 04229
5 sam_hdr_tid2name [function] [call site] 04230
5 ks_clear [function] [call site] 04231
5 kputs [function] [call site] 04232
5 memcmp [call site] 04233
5 memcmp [call site] 04234
5 ks_clear [function] [call site] 04235
5 ks_resize [function] [call site] 04236
5 nibble2base [function] [call site] 04237
5 memcmp [call site] 04238
5 memcmp [call site] 04239
5 bam_aux_get [function] [call site] 04240
5 ks_clear [function] [call site] 04241
5 kputs [function] [call site] 04242
5 ks_clear [function] [call site] 04243
5 kputsn [function] [call site] 04244
5 bam_aux2i [function] [call site] 04245
6 get_int_aux_val [function] [call site] 04246
7 le_to_i8 [function] [call site] 04247
7 le_to_i16 [function] [call site] 04248
7 le_to_u16 [function] [call site] 04249
7 le_to_i32 [function] [call site] 04250
7 le_to_u32 [function] [call site] 04251
7 __errno_location [call site] 04252
5 bam_aux2f [function] [call site] 04253
6 le_to_double [function] [call site] 04254
6 le_to_float [function] [call site] 04255
6 get_int_aux_val [function] [call site] 04256
5 hts_log [function] [call site] 04257
4 hts_log [function] [call site] 04258
4 hts_expr_val_free [function] [call site] 04259
4 hts_expr_val_free [function] [call site] 04260
2 sam_write1 [function] [call site] 04261
3 bam_write_idx1 [function] [call site] 04262
4 bam_write1 [function] [call site] 04263
5 hts_log [function] [call site] 04264
5 __errno_location [call site] 04265
5 hts_log [function] [call site] 04266
5 bgzf_flush_try [function] [call site] 04267
6 lazy_flush [function] [call site] 04268
5 ed_swap_4p [function] [call site] 04269
5 ed_swap_4p [function] [call site] 04270
5 bgzf_write_small [function] [call site] 04271
6 bgzf_write [function] [call site] 04272
5 swap_data [function] [call site] 04273
5 bgzf_write_small [function] [call site] 04274
5 bgzf_write_small [function] [call site] 04275
5 bgzf_write_small [function] [call site] 04276
5 bgzf_write_small [function] [call site] 04277
5 bam_cigar2rlen [function] [call site] 04278
5 hts_log [function] [call site] 04279
5 u32_to_le [function] [call site] 04280
5 u32_to_le [function] [call site] 04281
5 bgzf_write_small [function] [call site] 04282
5 bgzf_write_small [function] [call site] 04283
5 bgzf_write_small [function] [call site] 04284
5 u32_to_le [function] [call site] 04285
5 bgzf_write_small [function] [call site] 04286
5 bgzf_write_small [function] [call site] 04287
5 swap_data [function] [call site] 04288
4 bgzf_flush_try [function] [call site] 04289
4 hts_idx_amend_last [function] [call site] 04290
4 bam_write1 [function] [call site] 04291
4 bam_endpos [function] [call site] 04292
4 bgzf_idx_push [function] [call site] 04293
5 hts_idx_push [function] [call site] 04294
6 hts_idx_check_range [function] [call site] 04295
7 hts_idx_maxpos [function] [call site] 04296
8 hts_bin_maxpos [function] [call site] 04297
7 hts_log [function] [call site] 04298
7 idx_format_name [function] [call site] 04299
7 hts_log [function] [call site] 04300
7 __errno_location [call site] 04301
6 realloc [call site] 04302
6 realloc [call site] 04303
6 hts_log [function] [call site] 04304
6 hts_log [function] [call site] 04305
6 hts_log [function] [call site] 04306
6 hts_log [function] [call site] 04307
6 kh_init_bin [function] [call site] 04308
7 calloc [call site] 04309
6 insert_to_l [function] [call site] 04310
7 realloc [call site] 04311
6 hts_reg2bin [function] [call site] 04312
6 insert_to_b [function] [call site] 04313
7 kh_put_bin [function] [call site] 04314
8 kh_resize_bin [function] [call site] 04315
9 realloc [call site] 04316
7 calloc [call site] 04317
7 kh_del_bin [function] [call site] 04318
7 realloc [call site] 04319
6 insert_to_b [function] [call site] 04320
6 insert_to_b [function] [call site] 04321
5 hts_idx_check_range [function] [call site] 04322
5 realloc [call site] 04323
5 pthread_mutex_unlock [call site] 04324
5 pthread_mutex_unlock [call site] 04325
4 sam_hdr_tid2name [function] [call site] 04326
4 sam_hdr_tid2len [function] [call site] 04327
5 kh_get_s2i [function] [call site] 04328
4 hts_log [function] [call site] 04329
3 cram_put_bam_seq [function] [call site] 04330
4 cram_new_container [function] [call site] 04331
4 pthread_mutex_lock [call site] 04332
4 pthread_mutex_unlock [call site] 04333
4 hts_log [function] [call site] 04334
4 pthread_mutex_lock [call site] 04335
4 hts_log [function] [call site] 04336
4 pthread_mutex_unlock [call site] 04337
4 cram_next_container [function] [call site] 04338
5 cram_update_curr_slice [function] [call site] 04339
5 hts_log [function] [call site] 04340
5 cram_flush_container_mt [function] [call site] 04341
5 cram_free_slice [function] [call site] 04342
5 cram_free_container [function] [call site] 04343
5 cram_new_container [function] [call site] 04344
5 pthread_mutex_lock [call site] 04345
5 pthread_mutex_unlock [call site] 04346
5 cram_new_slice [function] [call site] 04347
6 calloc [call site] 04348
6 calloc [call site] 04349
6 cram_new_block [function] [call site] 04350
6 cram_new_block [function] [call site] 04351
6 cram_new_block [function] [call site] 04352
6 cram_new_block [function] [call site] 04353
6 cram_new_block [function] [call site] 04354
6 cram_new_block [function] [call site] 04355
6 string_pool_create [function] [call site] 04356
6 kh_init_m_s2i [function] [call site] 04357
6 kh_init_m_s2i [function] [call site] 04358
6 cram_free_slice [function] [call site] 04359
4 pthread_mutex_lock [call site] 04360
4 hts_log [function] [call site] 04361
4 pthread_mutex_unlock [call site] 04362
4 pthread_mutex_lock [call site] 04363
4 calloc [call site] 04364
4 pthread_mutex_unlock [call site] 04365
4 pthread_mutex_lock [call site] 04366
4 calloc [call site] 04367
4 pthread_mutex_unlock [call site] 04368
4 pthread_mutex_lock [call site] 04369
4 pthread_mutex_unlock [call site] 04370
4 pthread_mutex_lock [call site] 04371
4 calloc [call site] 04372
4 pthread_mutex_unlock [call site] 04373
4 pthread_mutex_unlock [call site] 04374
4 bam_copy1 [function] [call site] 04375
4 bam_dup1 [function] [call site] 04376
5 bam_init1 [function] [call site] 04377
5 bam_copy1 [function] [call site] 04378
5 bam_destroy1 [function] [call site] 04379
4 bam_cigar2qlen [function] [call site] 04380
4 hts_log [function] [call site] 04381
3 pthread_create [call site] 04382
3 sam_dispatcher_write [function] [call site] 04383
4 hts_tpool_next_result_wait [function] [call site] 04384
4 hts_tpool_result_data [function] [call site] 04385
4 sam_state_err [function] [call site] 04386
4 bgzf_flush_try [function] [call site] 04387
4 bgzf_write [function] [call site] 04388
4 hwrite [function] [call site] 04389
4 bam_endpos [function] [call site] 04390
4 bgzf_idx_push [function] [call site] 04391
4 __errno_location [call site] 04392
4 sam_state_err [function] [call site] 04393
4 sam_hdr_tid2name [function] [call site] 04394
4 sam_hdr_tid2len [function] [call site] 04395
4 hts_log [function] [call site] 04396
4 bam_endpos [function] [call site] 04397
4 hts_idx_push [function] [call site] 04398
4 __errno_location [call site] 04399
4 sam_state_err [function] [call site] 04400
4 sam_hdr_tid2name [function] [call site] 04401
4 sam_hdr_tid2len [function] [call site] 04402
4 hts_log [function] [call site] 04403
4 __assert_fail [call site] 04404
4 pthread_mutex_lock [call site] 04405
4 pthread_mutex_unlock [call site] 04406
4 bgzf_write [function] [call site] 04407
4 bgzf_flush_try [function] [call site] 04408
4 bgzf_write [function] [call site] 04409
4 hwrite [function] [call site] 04410
4 hts_tpool_delete_result [function] [call site] 04411
4 pthread_mutex_lock [call site] 04412
4 pthread_mutex_unlock [call site] 04413
4 sam_state_err [function] [call site] 04414
4 hts_tpool_process_shutdown [function] [call site] 04415
4 __errno_location [call site] 04416
4 sam_state_err [function] [call site] 04417
3 hts_log [function] [call site] 04418
3 pthread_mutex_lock [call site] 04419
3 pthread_mutex_unlock [call site] 04420
3 pthread_mutex_unlock [call site] 04421
3 calloc [call site] 04422
3 calloc [call site] 04423
3 bam_copy1 [function] [call site] 04424
3 pthread_mutex_lock [call site] 04425
3 pthread_mutex_unlock [call site] 04426
3 hts_tpool_dispatch3 [function] [call site] 04427
3 sam_format_worker [function] [call site] 04428
3 cleanup_sp_bams [function] [call site] 04429
3 cleanup_sp_lines [function] [call site] 04430
3 pthread_mutex_unlock [call site] 04431
3 pthread_mutex_unlock [call site] 04432
3 sam_format1 [function] [call site] 04433
4 sam_format1_append [function] [call site] 04434
3 kputc [function] [call site] 04435
3 bgzf_flush_try [function] [call site] 04436
3 bgzf_write [function] [call site] 04437
3 hwrite [function] [call site] 04438
3 bam_endpos [function] [call site] 04439
3 bgzf_idx_push [function] [call site] 04440
3 sam_hdr_tid2name [function] [call site] 04441
3 sam_hdr_tid2len [function] [call site] 04442
3 hts_log [function] [call site] 04443
3 bam_endpos [function] [call site] 04444
3 hts_idx_push [function] [call site] 04445
3 sam_hdr_tid2name [function] [call site] 04446
3 sam_hdr_tid2len [function] [call site] 04447
3 hts_log [function] [call site] 04448
3 fastq_state_init [function] [call site] 04449
3 fastq_format1 [function] [call site] 04450
4 kputc [function] [call site] 04451
4 kputs [function] [call site] 04452
4 kputs [function] [call site] 04453
4 kputs [function] [call site] 04454
4 bam_aux_get [function] [call site] 04455
4 ksprintf [function] [call site] 04456
4 isupper_c [function] [call site] 04457
5 __ctype_b_loc [call site] 04458
4 islower_c [function] [call site] 04459
5 __ctype_b_loc [call site] 04460
4 hts_log [function] [call site] 04461
4 strlen [call site] 04462
4 strlen [call site] 04463
4 isalpha_c [function] [call site] 04464
4 islower_c [function] [call site] 04465
4 toupper_c [function] [call site] 04466
4 kh_get_tag [function] [call site] 04467
4 kputc_ [function] [call site] 04468
4 sam_format_aux1 [function] [call site] 04469
4 skip_aux [function] [call site] 04470
4 kputsn [function] [call site] 04471
4 ks_resize [function] [call site] 04472
4 kputc_ [function] [call site] 04473
4 kputc_ [function] [call site] 04474
4 kputc_ [function] [call site] 04475
4 kputsn [function] [call site] 04476
4 kputc_ [function] [call site] 04477
4 kputc_ [function] [call site] 04478
4 kputc_ [function] [call site] 04479
4 kputc [function] [call site] 04480
3 bgzf_flush_try [function] [call site] 04481
3 bgzf_write [function] [call site] 04482
3 hwrite [function] [call site] 04483
3 __errno_location [call site] 04484
2 bam_destroy1 [function] [call site] 04485
2 sam_hdr_destroy [function] [call site] 04486
2 hts_close_or_abort [function] [call site] 04487
2 hts_close [function] [call site] 04488
2 hts_close [function] [call site] 04489
1 view_sam [function] [call site] 04490
1 view_sam [function] [call site] 04491
1 view_vcf [function] [call site] 04492
2 abort [call site] 04493
2 hopen [function] [call site] 04494
2 hts_hopen [function] [call site] 04495
2 hclose [function] [call site] 04496
2 abort [call site] 04497
2 hts_open [function] [call site] 04498
2 abort [call site] 04499
2 bcf_hdr_read [function] [call site] 04500
3 vcf_hdr_read [function] [call site] 04501
4 bcf_hdr_init [function] [call site] 04502
5 calloc [call site] 04503
5 kh_init_vdict [function] [call site] 04504
6 calloc [call site] 04505
5 kh_resize_vdict [function] [call site] 04506
6 realloc [call site] 04507
6 __ac_FNV1a_hash_string [function] [call site] 04508
5 calloc [call site] 04509
5 kh_init_hdict [function] [call site] 04510
6 calloc [call site] 04511
5 strchr [call site] 04512
5 bcf_hdr_append [function] [call site] 04513
6 bcf_hdr_parse_line [function] [call site] 04514
7 calloc [call site] 04515
7 isalpha_c [function] [call site] 04516
7 isalnum_c [function] [call site] 04517
7 bcf_hrec_add_key [function] [call site] 04518
8 __assert_fail [call site] 04519
8 realloc [call site] 04520
8 realloc [call site] 04521
7 is_escaped [function] [call site] 04522
7 hts_strprint [function] [call site] 04523
7 hts_log [function] [call site] 04524
7 bcf_hrec_set_val [function] [call site] 04525
8 __errno_location [call site] 04526
8 __errno_location [call site] 04527
7 hts_log [function] [call site] 04528
7 isspace_c [function] [call site] 04529
7 hts_strprint [function] [call site] 04530
7 hts_log [function] [call site] 04531
7 bcf_hrec_destroy [function] [call site] 04532
7 hts_strprint [function] [call site] 04533
7 hts_log [function] [call site] 04534
7 bcf_hrec_destroy [function] [call site] 04535
6 bcf_hdr_add_hrec [function] [call site] 04536
7 get_hdr_aux [function] [call site] 04537
7 bcf_hrec_check [function] [call site] 04538
8 bcf_hrec_set_type [function] [call site] 04539
9 strcmp [call site] 04540
9 strcmp [call site] 04541
9 strcmp [call site] 04542
9 strcmp [call site] 04543
8 bcf_hrec_find_key [function] [call site] 04544
9 strcasecmp [call site] 04545
8 bcf_hrec_find_key [function] [call site] 04546
8 strcmp [call site] 04547
8 bcf_hrec_find_key [function] [call site] 04548
8 hts_log [function] [call site] 04549
8 hts_log [function] [call site] 04550
8 hts_log [function] [call site] 04551
7 bcf_hdr_register_hrec [function] [call site] 04552
8 bcf_hrec_set_type [function] [call site] 04553
8 bcf_hrec_find_key [function] [call site] 04554
8 strtoll [call site] 04555
8 bcf_hrec_find_key [function] [call site] 04556
8 strdup [call site] 04557
8 kh_get_vdict [function] [call site] 04558
9 strcmp [call site] 04559
8 kh_put_vdict [function] [call site] 04560
9 kh_resize_vdict [function] [call site] 04561
8 bcf_hrec_find_key [function] [call site] 04562
8 strtol [call site] 04563
8 kh_del_vdict [function] [call site] 04564
8 bcf_hdr_set_idx [function] [call site] 04565
9 __errno_location [call site] 04566
9 hts_resize_array_ [function] [call site] 04567
10 hts_log [function] [call site] 04568
10 __errno_location [call site] 04569
10 realloc [call site] 04570
10 __errno_location [call site] 04571
10 __errno_location [call site] 04572
10 strerror [call site] 04573
10 hts_log [function] [call site] 04574
10 __errno_location [call site] 04575
10 abort [call site] 04576
10 abort [call site] 04577
8 kh_del_vdict [function] [call site] 04578
8 hrec_add_idx [function] [call site] 04579
9 realloc [call site] 04580
9 realloc [call site] 04581
9 strdup [call site] 04582
9 kputw [function] [call site] 04583
8 strcmp [call site] 04584
8 strcmp [call site] 04585
8 strtol [call site] 04586
8 hts_log [function] [call site] 04587
8 strcmp [call site] 04588
8 strcmp [call site] 04589
8 strcmp [call site] 04590
8 strcmp [call site] 04591
8 strcmp [call site] 04592
8 strcmp [call site] 04593
8 hts_log [function] [call site] 04594
8 strcmp [call site] 04595
8 strcmp [call site] 04596
8 strcmp [call site] 04597
8 strcmp [call site] 04598
8 strcmp [call site] 04599
8 __isoc99_sscanf [call site] 04600
8 hts_log [function] [call site] 04601
8 hts_log [function] [call site] 04602
8 hts_log [function] [call site] 04603
8 strdup [call site] 04604
8 kh_get_vdict [function] [call site] 04605
8 hrec_add_idx [function] [call site] 04606
8 kh_put_vdict [function] [call site] 04607
8 bcf_hdr_set_idx [function] [call site] 04608
8 kh_del_vdict [function] [call site] 04609
8 hrec_add_idx [function] [call site] 04610
7 bcf_hrec_destroy [function] [call site] 04611
7 ksprintf [function] [call site] 04612
7 kh_get_hdict [function] [call site] 04613
8 __ac_FNV1a_hash_string [function] [call site] 04614
8 strcmp [call site] 04615
7 bcf_hrec_destroy [function] [call site] 04616
7 strcmp [call site] 04617
7 bcf_get_version [function] [call site] 04618
8 get_hdr_aux [function] [call site] 04619
8 bcf_hdr_get_version [function] [call site] 04620
9 bcf_hdr_get_hrec [function] [call site] 04621
10 ksprintf [function] [call site] 04622
10 get_hdr_aux [function] [call site] 04623
10 kh_get_hdict [function] [call site] 04624
10 strcmp [call site] 04625
10 ksprintf [function] [call site] 04626
10 get_hdr_aux [function] [call site] 04627
10 kh_get_hdict [function] [call site] 04628
10 strcmp [call site] 04629
10 bcf_hrec_find_key [function] [call site] 04630
10 strcmp [call site] 04631
10 kh_get_vdict [function] [call site] 04632
9 hts_log [function] [call site] 04633
8 strstr [call site] 04634
8 strchr [call site] 04635
8 strtol [call site] 04636
8 __errno_location [call site] 04637
8 __errno_location [call site] 04638
8 strtol [call site] 04639
8 __errno_location [call site] 04640
8 hts_log [function] [call site] 04641
7 bcf_hrec_find_key [function] [call site] 04642
7 ksprintf [function] [call site] 04643
7 kh_get_hdict [function] [call site] 04644
7 bcf_hrec_destroy [function] [call site] 04645
7 realloc [call site] 04646
7 bcf_hdr_unregister_hrec [function] [call site] 04647
8 bcf_hrec_find_key [function] [call site] 04648
8 kh_get_vdict [function] [call site] 04649
7 kh_put_hdict [function] [call site] 04650
8 kh_resize_hdict [function] [call site] 04651
9 realloc [call site] 04652
5 bcf_hdr_append [function] [call site] 04653
5 kh_destroy_vdict [function] [call site] 04654
4 hts_log [function] [call site] 04655
4 hts_getline [function] [call site] 04656
4 hts_log [function] [call site] 04657
4 hopen [function] [call site] 04658
4 kgetline [function] [call site] 04659
4 hgets [function] [call site] 04660
4 strchr [call site] 04661
4 kputs [function] [call site] 04662
4 kputsn [function] [call site] 04663
4 kputs [function] [call site] 04664
4 atol [call site] 04665
4 kputl [function] [call site] 04666
5 kputll [function] [call site] 04667
4 kputsn [function] [call site] 04668
4 hclose [function] [call site] 04669
4 hts_log [function] [call site] 04670
4 kputsn [function] [call site] 04671
4 kputc [function] [call site] 04672
4 hts_log [function] [call site] 04673
4 bcf_hdr_parse [function] [call site] 04674
5 bcf_hdr_parse_line [function] [call site] 04675
5 strcasecmp [call site] 04676
5 hts_log [function] [call site] 04677
5 bcf_hdr_add_hrec [function] [call site] 04678
5 bcf_hrec_destroy [function] [call site] 04679
5 bcf_hdr_parse_line [function] [call site] 04680
5 bcf_hdr_add_hrec [function] [call site] 04681
5 bcf_hrec_destroy [function] [call site] 04682
5 bcf_hdr_parse_line [function] [call site] 04683
5 bcf_hdr_add_hrec [function] [call site] 04684
5 bcf_hrec_destroy [function] [call site] 04685
5 __assert_fail [call site] 04686
5 __errno_location [call site] 04687
5 strerror [call site] 04688
5 hts_log [function] [call site] 04689
5 strncmp [call site] 04690
5 strchr [call site] 04691
5 hts_strprint [function] [call site] 04692
5 hts_log [function] [call site] 04693
5 hts_log [function] [call site] 04694
5 bcf_hdr_parse_sample_line [function] [call site] 04695
6 strlen [call site] 04696
6 strncmp [call site] 04697
6 hts_log [function] [call site] 04698
6 strlen [call site] 04699
6 strncmp [call site] 04700
6 bcf_hdr_add_sample_len [function] [call site] 04701
7 isspace_c [function] [call site] 04702
7 hts_log [function] [call site] 04703
7 realloc [call site] 04704
7 kh_put_vdict [function] [call site] 04705
5 bcf_hdr_sync [function] [call site] 04706
6 realloc [call site] 04707
6 get_hdr_aux [function] [call site] 04708
5 bcf_hdr_check_sanity [function] [call site] 04709
6 bcf_hdr_id2int [function] [call site] 04710
7 kh_get_vdict [function] [call site] 04711
6 hts_log [function] [call site] 04712
6 bcf_hdr_id2int [function] [call site] 04713
4 tbx_index_load3 [function] [call site] 04714
5 index_load [function] [call site] 04715
6 calloc [call site] 04716
6 hts_idx_load3 [function] [call site] 04717
7 idx_find_and_load [function] [call site] 04718
8 strstr [call site] 04719
8 strdup [call site] 04720
8 __errno_location [call site] 04721
8 strerror [call site] 04722
8 hts_log [function] [call site] 04723
8 hts_idx_load3 [function] [call site] 04724
9 hisremote [function] [call site] 04725
9 stat [call site] 04726
9 hts_log [function] [call site] 04727
9 idx_test_and_fetch [function] [call site] 04728
10 hisremote [function] [call site] 04729
10 strncmp [call site] 04730
10 strcspn [call site] 04731
10 kputsn [function] [call site] 04732
10 access [call site] 04733
10 hopen [function] [call site] 04734
10 hts_log [function] [call site] 04735
10 hts_detect_format2 [function] [call site] 04736
10 hts_log [function] [call site] 04737
10 hts_log [function] [call site] 04738
10 hts_open_tmpfile [function] [call site] 04739
10 hts_log [function] [call site] 04740
10 hts_log [function] [call site] 04741
10 calloc [call site] 04742
10 __errno_location [call site] 04743
10 strerror [call site] 04744
10 hts_log [function] [call site] 04745
10 hread [function] [call site] 04746
10 hwrite [function] [call site] 04747
10 __errno_location [call site] 04748
10 strerror [call site] 04749
10 hts_log [function] [call site] 04750
10 hts_log [function] [call site] 04751
10 hclose [function] [call site] 04752
10 __errno_location [call site] 04753
10 strerror [call site] 04754
10 hts_log [function] [call site] 04755
10 rename [call site] 04756
10 __errno_location [call site] 04757
10 strerror [call site] 04758
10 hts_log [function] [call site] 04759
10 ks_clear [function] [call site] 04760
10 hclose [function] [call site] 04761
10 hts_log [function] [call site] 04762
10 hopen [function] [call site] 04763
10 hclose_abruptly [function] [call site] 04764
10 strlen [call site] 04765
10 __errno_location [call site] 04766
10 hclose_abruptly [function] [call site] 04767
10 hclose_abruptly [function] [call site] 04768
10 unlink [call site] 04769
10 __errno_location [call site] 04770
9 strdup [call site] 04771
9 idx_read [function] [call site] 04772
10 bgzf_open [function] [call site] 04773
10 ed_is_big [function] [call site] 04774
10 bgzf_read [function] [call site] 04775
10 memcmp [call site] 04776
10 bgzf_read [function] [call site] 04777
10 ed_swap_4p [function] [call site] 04778
10 bgzf_read [function] [call site] 04779
10 bgzf_read [function] [call site] 04780
10 ed_swap_4p [function] [call site] 04781
10 hts_idx_init [function] [call site] 04782
11 calloc [call site] 04783
11 calloc [call site] 04784
10 idx_read_core [function] [call site] 04785
11 ed_is_big [function] [call site] 04786
11 kh_init_bin [function] [call site] 04787
11 bgzf_read [function] [call site] 04788
11 ed_swap_4p [function] [call site] 04789
11 bgzf_read [function] [call site] 04790
11 ed_swap_4p [function] [call site] 04791
11 kh_put_bin [function] [call site] 04792
11 bgzf_read [function] [call site] 04793
11 ed_swap_8p [function] [call site] 04794
11 bgzf_read [function] [call site] 04795
11 ed_swap_4p [function] [call site] 04796
11 bgzf_read [function] [call site] 04797
11 swap_bins [function] [call site] 04798
12 ed_swap_8p [function] [call site] 04799
12 ed_swap_8p [function] [call site] 04800
11 bgzf_read [function] [call site] 04801
11 ed_swap_4p [function] [call site] 04802
11 bgzf_read [function] [call site] 04803
11 ed_swap_8p [function] [call site] 04804
11 update_loff [function] [call site] 04805
12 hts_bin_bot [function] [call site] 04806
13 hts_bin_level [function] [call site] 04807
11 bgzf_read [function] [call site] 04808
11 ed_swap_8p [function] [call site] 04809
10 memcmp [call site] 04810
10 bgzf_read [function] [call site] 04811
10 le_to_u32 [function] [call site] 04812
10 hts_idx_init [function] [call site] 04813
10 le_to_u32 [function] [call site] 04814
10 bgzf_read [function] [call site] 04815
10 idx_read_core [function] [call site] 04816
10 memcmp [call site] 04817
10 bgzf_read [function] [call site] 04818
10 ed_swap_4p [function] [call site] 04819
10 hts_idx_init [function] [call site] 04820
10 idx_read_core [function] [call site] 04821
10 __errno_location [call site] 04822
10 bgzf_close [function] [call site] 04823
10 bgzf_close [function] [call site] 04824
10 hts_idx_destroy [function] [call site] 04825
9 __errno_location [call site] 04826
9 strerror [call site] 04827
9 hts_log [function] [call site] 04828
8 hts_idx_check_local [function] [call site] 04829
9 hisremote [function] [call site] 04830
9 strlen [call site] 04831
9 strncmp [call site] 04832
9 strncmp [call site] 04833
9 hts_log [function] [call site] 04834
9 strlen [call site] 04835
9 calloc [call site] 04836
9 strcpy [call site] 04837
9 stat [call site] 04838
9 strcpy [call site] 04839
9 stat [call site] 04840
9 strcpy [call site] 04841
9 stat [call site] 04842
9 strcpy [call site] 04843
9 stat [call site] 04844
9 strcpy [call site] 04845
9 stat [call site] 04846
9 strcpy [call site] 04847
9 stat [call site] 04848
9 strcpy [call site] 04849
9 stat [call site] 04850
9 strcpy [call site] 04851
9 stat [call site] 04852
9 strcpy [call site] 04853
9 strcmp [call site] 04854
9 strcmp [call site] 04855
9 strcpy [call site] 04856
9 stat [call site] 04857
9 strcpy [call site] 04858
9 stat [call site] 04859
8 hisremote [function] [call site] 04860
8 idx_filename [function] [call site] 04861
9 haddextension [function] [call site] 04862
10 find_scheme_handler [function] [call site] 04863
10 strncmp [call site] 04864
10 strcspn [call site] 04865
10 strchr [call site] 04866
10 strip_extension [function] [call site] 04867
10 kputsn [function] [call site] 04868
10 kputs [function] [call site] 04869
10 kputs [function] [call site] 04870
9 idx_test_and_fetch [function] [call site] 04871
9 haddextension [function] [call site] 04872
9 idx_test_and_fetch [function] [call site] 04873
8 idx_filename [function] [call site] 04874
8 idx_filename [function] [call site] 04875
8 idx_filename [function] [call site] 04876
8 idx_filename [function] [call site] 04877
8 idx_filename [function] [call site] 04878
8 hts_idx_load3 [function] [call site] 04879
8 idx_read [function] [call site] 04880
6 hts_idx_get_meta [function] [call site] 04881
6 le_to_i32 [function] [call site] 04882
6 le_to_i32 [function] [call site] 04883
6 le_to_i32 [function] [call site] 04884
6 le_to_i32 [function] [call site] 04885
6 le_to_i32 [function] [call site] 04886
6 le_to_i32 [function] [call site] 04887
6 le_to_u32 [function] [call site] 04888
6 get_tid [function] [call site] 04889
7 kh_init_s2i [function] [call site] 04890
7 kh_put_s2i [function] [call site] 04891
7 strdup [call site] 04892
7 kh_del_s2i [function] [call site] 04893
7 kh_get_s2i [function] [call site] 04894
6 __errno_location [call site] 04895
6 strerror [call site] 04896
6 hts_log [function] [call site] 04897
6 strlen [call site] 04898
6 hts_log [function] [call site] 04899
6 tbx_destroy [function] [call site] 04900
7 hts_idx_destroy [function] [call site] 04901
7 kh_destroy_s2i [function] [call site] 04902
4 tbx_seqnames [function] [call site] 04903
5 calloc [call site] 04904
5 calloc [call site] 04905
5 __assert_fail [call site] 04906
5 __assert_fail [call site] 04907
4 bcf_hdr_get_hrec [function] [call site] 04908
4 add_missing_contig_hrec [function] [call site] 04909
5 calloc [call site] 04910
5 strdup [call site] 04911
5 bcf_hrec_add_key [function] [call site] 04912
5 strlen [call site] 04913
5 bcf_hrec_set_val [function] [call site] 04914
5 bcf_hdr_add_hrec [function] [call site] 04915
5 __errno_location [call site] 04916
5 __errno_location [call site] 04917
5 strerror [call site] 04918
5 hts_log [function] [call site] 04919
5 bcf_hrec_destroy [function] [call site] 04920
5 __errno_location [call site] 04921
4 bcf_hdr_sync [function] [call site] 04922
4 tbx_destroy [function] [call site] 04923
4 tbx_destroy [function] [call site] 04924
4 bcf_hdr_destroy [function] [call site] 04925
5 get_hdr_aux [function] [call site] 04926
5 kh_destroy_hdict [function] [call site] 04927
5 kh_destroy_vdict [function] [call site] 04928
5 bcf_hrec_destroy [function] [call site] 04929
3 hts_log [function] [call site] 04930
3 __assert_fail [call site] 04931
3 bcf_hdr_init [function] [call site] 04932
3 hts_log [function] [call site] 04933
3 bgzf_read [function] [call site] 04934
3 hts_log [function] [call site] 04935
3 bcf_hdr_destroy [function] [call site] 04936
3 strncmp [call site] 04937
3 strncmp [call site] 04938
3 hts_log [function] [call site] 04939
3 hts_log [function] [call site] 04940
3 bcf_hdr_destroy [function] [call site] 04941
3 bgzf_read [function] [call site] 04942
3 __errno_location [call site] 04943
3 __errno_location [call site] 04944
3 bgzf_read [function] [call site] 04945
3 bcf_hdr_parse [function] [call site] 04946
3 hts_log [function] [call site] 04947
3 bcf_hdr_destroy [function] [call site] 04948
2 hts_close_or_abort [function] [call site] 04949
2 hts_close [function] [call site] 04950
2 bcf_hdr_write [function] [call site] 04951
3 __errno_location [call site] 04952
3 bcf_hdr_sync [function] [call site] 04953
3 vcf_hdr_write [function] [call site] 04954
4 bcf_hdr_format [function] [call site] 04955
5 _bcf_hrec_format [function] [call site] 04956
6 ksprintf [function] [call site] 04957
6 strcmp [call site] 04958
6 kputc [function] [call site] 04959
6 ksprintf [function] [call site] 04960
6 ksprintf [function] [call site] 04961
6 ksprintf [function] [call site] 04962
5 ksprintf [function] [call site] 04963
5 ksprintf [function] [call site] 04964
5 ksprintf [function] [call site] 04965
5 ksprintf [function] [call site] 04966
4 bgzf_write [function] [call site] 04967
4 bgzf_flush [function] [call site] 04968
4 hwrite [function] [call site] 04969
3 bcf_hdr_format [function] [call site] 04970
3 kputc [function] [call site] 04971
3 bgzf_write [function] [call site] 04972
3 u32_to_le [function] [call site] 04973
3 bgzf_write [function] [call site] 04974
3 bgzf_write [function] [call site] 04975
3 bgzf_flush [function] [call site] 04976
2 bcf_init [function] [call site] 04977
3 calloc [call site] 04978
2 bcf_read [function] [call site] 04979
3 vcf_read [function] [call site] 04980
4 hts_getline [function] [call site] 04981
4 vcf_parse [function] [call site] 04982
5 ks_resize [function] [call site] 04983
5 bcf_clear [function] [call site] 04984
6 bcf_float_set [function] [call site] 04985
5 kstrtok [function] [call site] 04986
5 kh_get_vdict [function] [call site] 04987
5 hts_log [function] [call site] 04988
5 fix_chromosome [function] [call site] 04989
6 ksprintf [function] [call site] 04990
6 bcf_hdr_parse_line [function] [call site] 04991
6 bcf_hdr_add_hrec [function] [call site] 04992
6 bcf_hrec_destroy [function] [call site] 04993
6 bcf_hdr_sync [function] [call site] 04994
6 kh_get_vdict [function] [call site] 04995
5 hts_log [function] [call site] 04996
5 kstrtok [function] [call site] 04997
5 hts_str2uint [function] [call site] 04998
5 hts_log [function] [call site] 04999
5 hts_log [function] [call site] 05000
5 kstrtok [function] [call site] 05001
5 memcmp [call site] 05002
5 bcf_enc_vchar [function] [call site] 05003
6 bcf_enc_size [function] [call site] 05004
7 ks_resize [function] [call site] 05005
7 ks_resize [function] [call site] 05006
7 i16_to_le [function] [call site] 05007
7 i32_to_le [function] [call site] 05008
6 kputsn [function] [call site] 05009
5 bcf_enc_size [function] [call site] 05010
5 kstrtok [function] [call site] 05011
5 bcf_enc_vchar [function] [call site] 05012
5 kstrtok [function] [call site] 05013
5 memcmp [call site] 05014
5 bcf_seqname_safe [function] [call site] 05015
6 bcf_seqname [function] [call site] 05016
7 bcf_hdr_id2name [function] [call site] 05017
5 hts_log [function] [call site] 05018
5 bcf_enc_vchar [function] [call site] 05019
5 kstrtok [function] [call site] 05020
5 memcmp [call site] 05021
5 atof [call site] 05022
5 bcf_float_set [function] [call site] 05023
5 kstrtok [function] [call site] 05024
5 memcmp [call site] 05025
5 vcf_parse_filter [function] [call site] 05026
6 bcf_seqname_safe [function] [call site] 05027
6 hts_log [function] [call site] 05028
6 kstrtok [function] [call site] 05029
6 kh_get_vdict [function] [call site] 05030
6 hts_log [function] [call site] 05031
6 ksprintf [function] [call site] 05032
6 bcf_hdr_parse_line [function] [call site] 05033
6 bcf_hdr_add_hrec [function] [call site] 05034
6 bcf_hrec_destroy [function] [call site] 05035
6 bcf_hdr_sync [function] [call site] 05036
6 kh_get_vdict [function] [call site] 05037
6 bcf_seqname_safe [function] [call site] 05038
6 hts_log [function] [call site] 05039
6 bcf_enc_vint [function] [call site] 05040
7 bcf_enc_size [function] [call site] 05041
7 bcf_enc_int1 [function] [call site] 05042
8 ks_resize [function] [call site] 05043
8 i16_to_le [function] [call site] 05044
8 i32_to_le [function] [call site] 05045
7 bcf_enc_size [function] [call site] 05046
7 ks_resize [function] [call site] 05047
7 bcf_enc_size [function] [call site] 05048
7 ks_resize [function] [call site] 05049
7 i16_to_le [function] [call site] 05050
7 bcf_enc_size [function] [call site] 05051
7 ks_resize [function] [call site] 05052
7 i32_to_le [function] [call site] 05053
5 bcf_enc_vint [function] [call site] 05054
5 kstrtok [function] [call site] 05055
5 memcmp [call site] 05056
5 vcf_parse_info [function] [call site] 05057
6 bcf_seqname_safe [function] [call site] 05058
6 hts_log [function] [call site] 05059
6 kh_get_vdict [function] [call site] 05060
6 hts_log [function] [call site] 05061
6 ksprintf [function] [call site] 05062
6 bcf_hdr_parse_line [function] [call site] 05063
6 bcf_hdr_add_hrec [function] [call site] 05064
6 bcf_hrec_destroy [function] [call site] 05065
6 bcf_hdr_sync [function] [call site] 05066
6 kh_get_vdict [function] [call site] 05067
6 bcf_seqname_safe [function] [call site] 05068
6 hts_log [function] [call site] 05069
6 bcf_enc_int1 [function] [call site] 05070
6 bcf_enc_size [function] [call site] 05071
6 bcf_enc_vchar [function] [call site] 05072
6 realloc [call site] 05073
6 bcf_seqname_safe [function] [call site] 05074
6 hts_log [function] [call site] 05075
6 hts_str2int [function] [call site] 05076
6 bcf_seqname_safe [function] [call site] 05077
6 bcf_enc_int1 [function] [call site] 05078
6 bcf_enc_vint [function] [call site] 05079
6 memcmp [call site] 05080
6 bcf_seqname_safe [function] [call site] 05081
6 hts_log [function] [call site] 05082
6 hts_str2dbl [function] [call site] 05083
6 bcf_float_set [function] [call site] 05084
6 bcf_enc_vfloat [function] [call site] 05085
7 __assert_fail [call site] 05086
7 bcf_enc_size [function] [call site] 05087
7 serialize_float_array [function] [call site] 05088
8 ks_resize [function] [call site] 05089
8 float_to_le [function] [call site] 05090
5 kstrtok [function] [call site] 05091
5 vcf_parse_format [function] [call site] 05092
6 vcf_parse_format_empty1 [function] [call site] 05093
7 bcf_seqname_safe [function] [call site] 05094
7 hts_log [function] [call site] 05095
6 vcf_parse_format_dict2 [function] [call site] 05096
7 kstrtok [function] [call site] 05097
7 bcf_seqname_safe [function] [call site] 05098
7 hts_log [function] [call site] 05099
7 kh_get_vdict [function] [call site] 05100
7 bcf_seqname_safe [function] [call site] 05101
7 hts_log [function] [call site] 05102
7 bcf_seqname_safe [function] [call site] 05103
7 hts_log [function] [call site] 05104
7 ksprintf [function] [call site] 05105
7 bcf_hdr_parse_line [function] [call site] 05106
7 bcf_hdr_add_hrec [function] [call site] 05107
7 bcf_hrec_destroy [function] [call site] 05108
7 bcf_hdr_sync [function] [call site] 05109
7 kh_get_vdict [function] [call site] 05110
7 bcf_seqname_safe [function] [call site] 05111
6 vcf_parse_format_max3 [function] [call site] 05112
7 hts_log [function] [call site] 05113
6 vcf_parse_format_alloc4 [function] [call site] 05114
7 bcf_seqname_safe [function] [call site] 05115
7 align_mem [function] [call site] 05116
8 kputsn [function] [call site] 05117
7 bcf_seqname_safe [function] [call site] 05118
7 hts_log [function] [call site] 05119
7 bcf_seqname_safe [function] [call site] 05120
7 hts_log [function] [call site] 05121
7 ks_resize [function] [call site] 05122
7 bcf_seqname_safe [function] [call site] 05123
7 hts_log [function] [call site] 05124
7 bcf_seqname_safe [function] [call site] 05125
7 hts_log [function] [call site] 05126
6 vcf_parse_format_fill5 [function] [call site] 05127
7 bcf_get_version [function] [call site] 05128
7 bcf_seqname_safe [function] [call site] 05129
7 hts_log [function] [call site] 05130
7 hts_str2uint [function] [call site] 05131
7 bcf_seqname_safe [function] [call site] 05132
7 hts_log [function] [call site] 05133
7 bcf_seqname_safe [function] [call site] 05134
7 hts_log [function] [call site] 05135
7 hts_str2int [function] [call site] 05136
7 bcf_seqname_safe [function] [call site] 05137
7 hts_log [function] [call site] 05138
7 isdigit_c [function] [call site] 05139
7 bcf_float_set [function] [call site] 05140
7 hts_str2dbl [function] [call site] 05141
7 bcf_seqname [function] [call site] 05142
7 hts_log [function] [call site] 05143
7 bcf_float_set [function] [call site] 05144
7 bcf_float_set [function] [call site] 05145
7 bcf_seqname_safe [function] [call site] 05146
7 hts_log [function] [call site] 05147
7 hts_strprint [function] [call site] 05148
7 bcf_seqname_safe [function] [call site] 05149
7 hts_log [function] [call site] 05150
7 bcf_float_set [function] [call site] 05151
7 bcf_float_set [function] [call site] 05152
6 vcf_parse_format_gt6 [function] [call site] 05153
7 bcf_enc_int1 [function] [call site] 05154
7 bcf_enc_size [function] [call site] 05155
7 kputsn [function] [call site] 05156
7 bcf_enc_vint [function] [call site] 05157
7 bcf_enc_size [function] [call site] 05158
7 serialize_float_array [function] [call site] 05159
7 bcf_seqname_safe [function] [call site] 05160
7 hts_log [function] [call site] 05161
6 vcf_parse_format_check7 [function] [call site] 05162
7 bcf_seqname_safe [function] [call site] 05163
7 hts_log [function] [call site] 05164
7 bcf_seqname_safe [function] [call site] 05165
5 get_rlen [function] [call site] 05166
6 bcf_hdr_id2int [function] [call site] 05167
6 bcf_hdr_id2int [function] [call site] 05168
6 bcf_hdr_id2int [function] [call site] 05169
6 strcmp [call site] 05170
6 strcmp [call site] 05171
6 strcmp [call site] 05172
6 strlen [call site] 05173
6 bcf_dec_size [function] [call site] 05174
7 bcf_dec_typed_int1 [function] [call site] 05175
8 bcf_dec_int1 [function] [call site] 05176
9 le_to_i8 [function] [call site] 05177
9 le_to_i16 [function] [call site] 05178
9 le_to_i32 [function] [call site] 05179
9 le_to_i64 [function] [call site] 05180
10 le_to_u64 [function] [call site] 05181
6 bcf_dec_size [function] [call site] 05182
6 strncmp [call site] 05183
6 strncmp [call site] 05184
6 strncmp [call site] 05185
6 bcf_dec_size [function] [call site] 05186
6 bcf_get_info [function] [call site] 05187
7 bcf_hdr_id2int [function] [call site] 05188
7 bcf_get_info_id [function] [call site] 05189
8 bcf_unpack [function] [call site] 05190
9 bcf_fmt_sized_array [function] [call site] 05191
10 bcf_dec_size [function] [call site] 05192
10 bcf_fmt_array [function] [call site] 05193
11 kputc_ [function] [call site] 05194
11 memchr [call site] 05195
11 kputsn [function] [call site] 05196
11 kputc [function] [call site] 05197
11 le_to_i8 [function] [call site] 05198
11 kputc_ [function] [call site] 05199
11 kputc [function] [call site] 05200
11 kputw [function] [call site] 05201
11 le_to_i16 [function] [call site] 05202
11 kputc_ [function] [call site] 05203
11 kputc [function] [call site] 05204
11 kputw [function] [call site] 05205
11 le_to_i32 [function] [call site] 05206
11 kputc_ [function] [call site] 05207
11 kputc [function] [call site] 05208
11 kputw [function] [call site] 05209
11 le_to_u32 [function] [call site] 05210
11 kputc_ [function] [call site] 05211
11 kputc [function] [call site] 05212
11 le_to_float [function] [call site] 05213
11 kputd [function] [call site] 05214
11 hts_log [function] [call site] 05215
11 exit [call site] 05216
9 kputc_ [function] [call site] 05217
9 hts_realloc_or_die [function] [call site] 05218
9 bcf_fmt_sized_array [function] [call site] 05219
9 kputc_ [function] [call site] 05220
9 bcf_dec_size [function] [call site] 05221
9 hts_realloc_or_die [function] [call site] 05222
9 bcf_dec_int1 [function] [call site] 05223
9 hts_realloc_or_die [function] [call site] 05224
9 bcf_unpack_info_core1 [function] [call site] 05225
10 bcf_dec_typed_int1 [function] [call site] 05226
10 bcf_dec_size [function] [call site] 05227
10 le_to_i16 [function] [call site] 05228
10 le_to_i32 [function] [call site] 05229
10 le_to_float [function] [call site] 05230
10 le_to_i64 [function] [call site] 05231
9 hts_realloc_or_die [function] [call site] 05232
9 bcf_unpack_fmt_core1 [function] [call site] 05233
10 bcf_dec_typed_int1 [function] [call site] 05234
10 bcf_dec_size [function] [call site] 05235
6 bcf_get_info [function] [call site] 05236
6 bcf_dec_typed_int1 [function] [call site] 05237
6 bcf_unpack_info_core1 [function] [call site] 05238
6 bcf_unpack_info_core1 [function] [call site] 05239
6 bcf_dec_size [function] [call site] 05240
6 bcf_get_fmt [function] [call site] 05241
7 bcf_hdr_id2int [function] [call site] 05242
7 bcf_get_fmt_id [function] [call site] 05243
8 bcf_unpack [function] [call site] 05244
6 bcf_dec_typed_int1 [function] [call site] 05245
6 bcf_unpack_fmt_core1 [function] [call site] 05246
6 bcf_dec_size [function] [call site] 05247
3 bcf_read1_core [function] [call site] 05248
4 bgzf_read [function] [call site] 05249
4 bcf_clear [function] [call site] 05250
4 le_to_u32 [function] [call site] 05251
4 le_to_u32 [function] [call site] 05252
4 ks_resize [function] [call site] 05253
4 ks_resize [function] [call site] 05254
4 le_to_i32 [function] [call site] 05255
4 le_to_u32 [function] [call site] 05256
4 le_to_i32 [function] [call site] 05257
4 le_to_float [function] [call site] 05258
4 le_to_u16 [function] [call site] 05259
4 le_to_u16 [function] [call site] 05260
4 le_to_u32 [function] [call site] 05261
4 bgzf_read [function] [call site] 05262
4 bgzf_read [function] [call site] 05263
3 bcf_record_check [function] [call site] 05264
4 hts_log [function] [call site] 05265
4 bcf_dec_size_safe [function] [call site] 05266
5 bcf_dec_typed_int1_safe [function] [call site] 05267
6 le_to_i16 [function] [call site] 05268
6 le_to_i32 [function] [call site] 05269
4 bcf_seqname_safe [function] [call site] 05270
4 get_type_name [function] [call site] 05271
4 hts_log [function] [call site] 05272
4 bcf_seqname_safe [function] [call site] 05273
4 hts_log [function] [call site] 05274
4 bcf_dec_size_safe [function] [call site] 05275
4 bcf_seqname_safe [function] [call site] 05276
4 get_type_name [function] [call site] 05277
4 hts_log [function] [call site] 05278
4 bcf_dec_size_safe [function] [call site] 05279
4 bcf_seqname_safe [function] [call site] 05280
4 get_type_name [function] [call site] 05281
4 hts_log [function] [call site] 05282
4 bcf_dec_int1 [function] [call site] 05283
4 bcf_seqname_safe [function] [call site] 05284
4 hts_log [function] [call site] 05285
4 bcf_dec_typed_int1_safe [function] [call site] 05286
4 bcf_seqname_safe [function] [call site] 05287
4 hts_log [function] [call site] 05288
4 bcf_dec_size_safe [function] [call site] 05289
4 bcf_seqname_safe [function] [call site] 05290
4 get_type_name [function] [call site] 05291
4 hts_log [function] [call site] 05292
4 bcf_dec_typed_int1_safe [function] [call site] 05293
4 bcf_record_check_err [function] [call site] 05294
5 bcf_seqname_safe [function] [call site] 05295
4 bcf_dec_size_safe [function] [call site] 05296
4 bcf_record_check_err [function] [call site] 05297
4 bcf_seqname_safe [function] [call site] 05298
4 hts_log [function] [call site] 05299
4 get_rlen [function] [call site] 05300
4 bcf_seqname_safe [function] [call site] 05301
4 hts_log [function] [call site] 05302
4 bcf_seqname_safe [function] [call site] 05303
4 hts_log [function] [call site] 05304
3 bcf_subset_format [function] [call site] 05305
4 hts_realloc_or_die [function] [call site] 05306
4 bcf_unpack_fmt_core1 [function] [call site] 05307
2 bcf_write [function] [call site] 05308
3 bcf_hdr_sync [function] [call site] 05309
3 bcf_seqname_safe [function] [call site] 05310
3 hts_log [function] [call site] 05311
3 vcf_write [function] [call site] 05312
4 vcf_format [function] [call site] 05313
5 bcf_seqname [function] [call site] 05314
5 hts_log [function] [call site] 05315
5 __errno_location [call site] 05316
5 bcf_unpack [function] [call site] 05317
5 get_hdr_aux [function] [call site] 05318
5 calloc [call site] 05319
5 kputs [function] [call site] 05320
5 kputc_ [function] [call site] 05321
5 kputll [function] [call site] 05322
5 kputc_ [function] [call site] 05323
5 kputs [function] [call site] 05324
5 kputc_ [function] [call site] 05325
5 kputs [function] [call site] 05326
5 kputc_ [function] [call site] 05327
5 kputc_ [function] [call site] 05328
5 kputc_ [function] [call site] 05329
5 kputs [function] [call site] 05330
5 kputc_ [function] [call site] 05331
5 kputc_ [function] [call site] 05332
5 bcf_float_is_missing [function] [call site] 05333
5 kputc_ [function] [call site] 05334
5 kputd [function] [call site] 05335
5 kputc_ [function] [call site] 05336
5 bcf_seqname_safe [function] [call site] 05337
5 hts_log [function] [call site] 05338
5 __errno_location [call site] 05339
5 kputc_ [function] [call site] 05340
5 strlen [call site] 05341
5 kputsn [function] [call site] 05342
5 kputc_ [function] [call site] 05343
5 kputc_ [function] [call site] 05344
5 bcf_dec_typed_int1 [function] [call site] 05345
5 bcf_dec_size [function] [call site] 05346
5 bcf_seqname_safe [function] [call site] 05347
5 hts_log [function] [call site] 05348
5 __errno_location [call site] 05349
5 strlen [call site] 05350
5 ks_resize [function] [call site] 05351
5 bcf_fmt_array [function] [call site] 05352
5 bcf_float_is_missing [function] [call site] 05353
5 kputc_ [function] [call site] 05354
5 kputd [function] [call site] 05355
5 kputc_ [function] [call site] 05356
5 kputc_ [function] [call site] 05357
5 kputw [function] [call site] 05358
5 kputc_ [function] [call site] 05359
5 kputll [function] [call site] 05360
5 bcf_seqname_safe [function] [call site] 05361
5 hts_log [function] [call site] 05362
5 __errno_location [call site] 05363
5 kputc_ [function] [call site] 05364
5 kputc_ [function] [call site] 05365
5 bcf_dec_typed_int1 [function] [call site] 05366
5 bcf_dec_size [function] [call site] 05367
5 kputc_ [function] [call site] 05368
5 bcf_seqname_safe [function] [call site] 05369
5 hts_log [function] [call site] 05370
5 __errno_location [call site] 05371
5 strlen [call site] 05372
5 kputsn [function] [call site] 05373
5 kputsn [function] [call site] 05374
5 kputc_ [function] [call site] 05375
5 kputc_ [function] [call site] 05376
5 bcf_format_gt_v2 [function] [call site] 05377
6 le_to_i8 [function] [call site] 05378
6 kputc [function] [call site] 05379
6 kputw [function] [call site] 05380
6 le_to_i16 [function] [call site] 05381
6 kputc [function] [call site] 05382
6 kputw [function] [call site] 05383
6 le_to_i32 [function] [call site] 05384
6 kputc [function] [call site] 05385
6 kputw [function] [call site] 05386
6 kputc [function] [call site] 05387
6 hts_log [function] [call site] 05388
6 get_hdr_aux [function] [call site] 05389
6 kinsert_char [function] [call site] 05390
7 ks_resize [function] [call site] 05391
6 kinsert_char [function] [call site] 05392
6 kinsert_char [function] [call site] 05393
5 hts_log [function] [call site] 05394
5 __errno_location [call site] 05395
5 bcf_fmt_array1 [function] [call site] 05396
6 kputc_ [function] [call site] 05397
6 kputc_ [function] [call site] 05398
6 kputw [function] [call site] 05399
6 le_to_i16 [function] [call site] 05400
6 kputc_ [function] [call site] 05401
6 kputw [function] [call site] 05402
6 le_to_i32 [function] [call site] 05403
6 kputc_ [function] [call site] 05404
6 kputw [function] [call site] 05405
6 le_to_u32 [function] [call site] 05406
6 kputc_ [function] [call site] 05407
6 le_to_float [function] [call site] 05408
6 kputd [function] [call site] 05409
6 hts_log [function] [call site] 05410
5 bcf_fmt_array [function] [call site] 05411
5 kputc_ [function] [call site] 05412
5 bcf_fmt_array1 [function] [call site] 05413
5 bcf_fmt_array [function] [call site] 05414
5 kputc_ [function] [call site] 05415
5 kputsn [function] [call site] 05416
5 kputc [function] [call site] 05417
4 bgzf_flush_try [function] [call site] 05418
4 hts_idx_amend_last [function] [call site] 05419
4 bgzf_write [function] [call site] 05420
4 hwrite [function] [call site] 05421
4 bcf_seqname_safe [function] [call site] 05422
4 hts_idx_tbi_name [function] [call site] 05423
5 strlen [call site] 05424
5 realloc [call site] 05425
5 strcpy [call site] 05426
5 le_to_u32 [function] [call site] 05427
5 u32_to_le [function] [call site] 05428
4 bgzf_idx_push [function] [call site] 05429
3 bcf_strerror [function] [call site] 05430
4 add_desc_to_buffer [function] [call site] 05431
5 strlen [call site] 05432
5 snprintf [call site] 05433
5 snprintf [call site] 05434
4 add_desc_to_buffer [function] [call site] 05435
3 bcf_seqname_safe [function] [call site] 05436
3 hts_log [function] [call site] 05437
3 bcf1_sync [function] [call site] 05438
4 bcf1_sync_id [function] [call site] 05439
5 strcmp [call site] 05440
5 strlen [call site] 05441
5 bcf_enc_vchar [function] [call site] 05442
5 bcf_enc_size [function] [call site] 05443
4 bcf1_sync_alleles [function] [call site] 05444
5 strlen [call site] 05445
5 bcf_enc_vchar [function] [call site] 05446
5 strlen [call site] 05447
4 bcf1_sync_filter [function] [call site] 05448
5 bcf_enc_vint [function] [call site] 05449
5 bcf_enc_vint [function] [call site] 05450
4 bcf1_sync_info [function] [call site] 05451
5 kputsn_ [function] [call site] 05452
4 bcf_unpack [function] [call site] 05453
4 bcf1_sync_id [function] [call site] 05454
4 kputsn_ [function] [call site] 05455
4 bcf1_sync_alleles [function] [call site] 05456
4 kputsn_ [function] [call site] 05457
4 strlen [call site] 05458
4 bcf1_sync_filter [function] [call site] 05459
4 kputsn_ [function] [call site] 05460
4 bcf_enc_vint [function] [call site] 05461
4 bcf1_sync_info [function] [call site] 05462
4 kputsn_ [function] [call site] 05463
4 kputsn_ [function] [call site] 05464
3 bcf_seqname_safe [function] [call site] 05465
3 hts_log [function] [call site] 05466
3 u32_to_le [function] [call site] 05467
3 u32_to_le [function] [call site] 05468
3 i32_to_le [function] [call site] 05469
3 u32_to_le [function] [call site] 05470
3 u32_to_le [function] [call site] 05471
3 float_to_le [function] [call site] 05472
3 u16_to_le [function] [call site] 05473
3 u16_to_le [function] [call site] 05474
3 u32_to_le [function] [call site] 05475
3 bgzf_write [function] [call site] 05476
3 bgzf_write [function] [call site] 05477
3 bgzf_write [function] [call site] 05478
3 bgzf_idx_push [function] [call site] 05479
2 bcf_destroy [function] [call site] 05480
3 bcf_empty [function] [call site] 05481
4 bcf_clear [function] [call site] 05482
2 bcf_hdr_destroy [function] [call site] 05483
2 hts_close_or_abort [function] [call site] 05484
2 hts_close [function] [call site] 05485
1 view_vcf [function] [call site] 05486