Fuzz introspector
For issues and ideas: https://github.com/ossf/fuzz-introspector/issues

Project functions overview

The following table shows data about each function in the project. The functions included in this table correspond to all functions that exist in the executables of the fuzzers. As such, there may be functions that are from third-party libraries.

For further technical details on the meaning of columns in the below table, please see the Glossary .

Func name Functions filename Args Function call depth Reached by Fuzzers Runtime reached by Fuzzers Combined reached by Fuzzers Fuzzers runtime hit Func lines hit % I Count BB Count Cyclomatic complexity Functions reached Reached by functions Accumulated cyclomatic complexity Undiscovered complexity

Fuzzer details

Fuzzer: hts_open_fuzzer

Call tree

The calltree shows the control flow of the fuzzer. This is overlaid with coverage information to display how much of the potential code a fuzzer can reach is in fact covered at runtime. In the following there is a link to a detailed calltree visualisation as well as a bitmap showing a high-level view of the calltree. For further information about these topics please see the glossary for full calltree and calltree overview

Call tree overview bitmap:

The distribution of callsites in terms of coloring is
Color Runtime hitcount Callsite count Percentage
red 0 2713 49.4%
gold [1:9] 190 3.46%
yellow [10:29] 123 2.24%
greenyellow [30:49] 42 0.76%
lawngreen 50+ 2419 44.0%
All colors 5487 100

Fuzz blockers

The followings are the branches where fuzzer fails to bypass.

Unique non-covered Complexity Unique Reachable Complexities Unique Reachable Functions All non-covered Complexity All Reachable Complexity Function Name Function Callsite Blocked Branch
3927 3927 3 :

['cram_flush_result', 'hts_tpool_process_destroy', 'hts_tpool_process_flush']

3961 11030 cram_close call site: 03116 /src/htslib/cram/cram_io.c:5581
2816 7861 8 :

['hts_detect_format2', 'hopen_htsget_redirect', 'cram_set_option', 'hts_process_opts', 'bgzf_hopen', 'cram_dopen', '__errno_location', 'hts_crypt4gh_redirect']

2816 7906 hts_hopen call site: 00325 /src/htslib/hts.c:1507
2623 2623 1 :

['hts_process_opts']

2623 2632 hts_hopen call site: 01524 /src/htslib/hts.c:1599
2541 2568 5 :

['strerror', '__errno_location', 'hts_log', 'hts_opt_apply', 'hclose_abruptly']

2541 2568 hts_open_format call site: 03183 /src/htslib/hts.c:965
1854 1854 1 :

['cram_load_reference']

1854 5525 sam_hdr_write call site: 03385 /src/htslib/sam.c:2243
1673 3100 7 :

['cram_ref_load', 'cram_ref_incr_locked', 'strcmp', 'free', 'bgzf_open_ref', 'bgzf_close', 'load_ref_portion']

1697 3124 cram_get_ref call site: 01886 /src/htslib/cram/cram_io.c:3468
1490 3416 11 :

['hts_md5_hex', 'hts_md5_destroy', 'hts_md5_final', 'full_path', 'hts_md5_init', 'hts_md5_update', 'sam_hrecs_find_key', 'cram_get_ref', 'cram_ref_decr', 'sam_hrecs_find_type_id', 'sam_hdr_update_line']

1496 7553 cram_write_SAM_hdr call site: 03403 /src/htslib/cram/cram_io.c:4944
1038 1038 1 :

['bcf_hdr_append']

1038 1038 bcf_hdr_init call site: 04512 /src/htslib/vcf.c:1504
605 605 1 :

['s3_rewrite']

605 605 s3_open call site: 00000 /src/htslib/hfile_s3.c:1395
601 653 10 :

['hts_md5_destroy', 'sam_hdr_find_tag_id', 'hts_md5_final', 'memcmp', 'ks_free.2359', 'hts_md5_init', 'hts_md5_update', 'md5_print', 'sam_hdr_tid2name', 'cram_get_block_by_id']

1619 3983 cram_decode_slice call site: 02960 /src/htslib/cram/cram_decode.c:2406
592 592 15 :

['pthread_mutex_lock', 'ks_release.4453', 'kputs.4451', 'free_auth', 'pthread_mutex_unlock', 'free', 'add_auth_header', 'strcspn', 'strncmp', 'kputsn_.4461', 'kh_put_auth_map', 'kh_get_auth_map', 'calloc', 'pthread_mutex_init', 'strstr']

592 592 get_auth_token call site: 00000 /src/htslib/hfile_libcurl.c:615
581 596 2 :

['sam_hdr_add_line', 'sam_hrecs_find_rg']

2077 8818 cram_write_SAM_hdr call site: 03391 /src/htslib/cram/cram_io.c:4909

Runtime coverage analysis

Covered functions
816
Functions that are reachable but not covered
423
Reachable functions
1082
Percentage of reachable functions covered
60.91%
NB: The sum of covered functions and functions that are reachable but not covered need not be equal to Reachable functions . This is because the reachability analysis is an approximation and thus at runtime some functions may be covered that are not included in the reachability analysis. This is a limitation of our static analysis capabilities.
Function name source code lines source lines hit percentage hit

Files reached

filename functions hit
/src/htslib/test/fuzz/hts_open_fuzzer.c 4
/src/htslib/hfile.c 42
/src/htslib/./textutils_internal.h 12
/src/htslib/hts.c 68
/src/htslib/./htslib/khash.h 1
/src/htslib/hfile_libcurl.c 7
/src/htslib/kstring.c 6
/src/htslib/./htslib/kstring.h 17
/src/htslib/hfile_gcs.c 1
/src/htslib/hfile_s3.c 1
/src/htslib/hfile_s3_write.c 3
/src/htslib/./htslib/hts.h 9
/src/htslib/./hts_internal.h 2
/src/htslib/multipart.c 5
/src/htslib/textutils.c 9
/src/htslib/./htslib/hfile.h 8
/src/htslib/bgzf.c 66
/src/htslib/cram/cram_io.c 75
/src/htslib/cram/../htslib/hfile.h 5
/src/htslib/cram/cram_structs.h 24
/src/htslib/cram/../header.h 4
/src/htslib/cram/string_alloc.c 6
/src/htslib/cram/cram_stats.c 5
/src/htslib/sam.c 89
/src/htslib/./htslib/sam.h 5
/src/htslib/htscodecs/htscodecs/rANS_static.c 6
/src/htslib/htscodecs/htscodecs/utils.c 5
/src/htslib/htscodecs/htscodecs/rANS_byte.h 11
/src/htslib/htscodecs/htscodecs/fqzcomp_qual.c 19
/src/htslib/htscodecs/htscodecs/varint.h 3
/src/htslib/htscodecs/htscodecs/c_simple_model.h 12
/src/htslib/htscodecs/htscodecs/c_range_coder.h 12
/src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c 8
/src/htslib/htscodecs/htscodecs/utils.h 4
/src/htslib/htscodecs/htscodecs/pack.c 3
/usr/local/lib/clang/18/include/cpuid.h 1
/src/htslib/htscodecs/htscodecs/rle.c 3
/src/htslib/htscodecs/htscodecs/arith_dynamic.c 11
/src/htslib/htscodecs/htscodecs/tokenise_name3.c 33
/src/htslib/htscodecs/htscodecs/pooled_alloc.h 4
/src/htslib/header.c 39
/src/htslib/./header.h 12
/src/htslib/cram/pooled_alloc.c 6
/src/htslib/./cram/../htslib/khash.h 1
/src/htslib/cram/mFILE.c 12
/src/htslib/thread_pool.c 29
/src/htslib/./htslib/hts_endian.h 16
/src/htslib/cram/../htslib/khash.h 1
/src/htslib/cram/cram_index.c 6
/src/htslib/cram/cram_decode.c 21
/src/htslib/faidx.c 14
/src/htslib/cram/../textutils_internal.h 3
/src/htslib/./sam_internal.h 3
/src/htslib/./cram/cram_io.h 1
/src/htslib/hts_expr.c 21
/src/htslib/cram/cram_encode.c 40
/src/htslib/cram/open_trace_file.c 6
/src/htslib/md5.c 7
/src/htslib/cram/../htslib/hts_endian.h 4
/src/htslib/cram/cram_io.h 10
/src/htslib/cram/../sam_internal.h 1
/src/htslib/cram/../htslib/kstring.h 7
/src/htslib/cram/cram_codecs.c 4
/src/htslib/cram/../hts_internal.h 1
/src/htslib/./htslib/bgzf.h 2
/src/htslib/./htslib/hts_expr.h 4
/src/htslib/vcf.c 96
/src/htslib/tbx.c 5
/src/htslib/./cram/../htslib/hts_endian.h 2
/src/htslib/./htslib/vcf.h 10

Analyses and suggestions

Optimal target analysis

Remaining optimal interesting functions

The following table shows a list of functions that are optimal targets. Optimal targets are identified by finding the functions that in combination, yield a high code coverage.

Func name Functions filename Arg count Args Function depth hitcount instr count bb count cyclomatic complexity Reachable functions Incoming references total cyclomatic complexity Unreached complexity
sam_itr_regarray /src/htslib/sam.c 4 ['N/A', 'N/A', 'N/A', 'int'] 31 0 127 19 8 667 0 5954 417
s3_vopen /src/htslib/hfile_s3.c 3 ['N/A', 'N/A', 'N/A'] 11 0 49 6 3 150 0 782 355
vhopen_libcurl /src/htslib/hfile_libcurl.c 3 ['N/A', 'N/A', 'N/A'] 14 0 59 9 4 153 0 801 326
bcf_index_build /src/htslib/vcf.c 2 ['N/A', 'int'] 27 0 20 3 2 926 0 9356 316
bam_mplp_auto /src/htslib/sam.c 5 ['N/A', 'N/A', 'N/A', 'N/A', 'N/A'] 8 0 72 10 4 34 0 328 277
rans_uncompress_O1_32x16_avx2 /src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c 4 ['N/A', 'int', 'N/A', 'int'] 4 0 4678 103 35 24 0 185 126
sam_hdr_remove_lines /src/htslib/header.c 4 ['N/A', 'N/A', 'N/A', 'N/A'] 11 0 366 59 24 80 0 703 119
bcf_hdr_subset /src/htslib/vcf.c 4 ['N/A', 'int', 'N/A', 'N/A'] 11 0 390 49 18 96 0 766 118
rans_compress_O1_32x16_avx512 /src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c 4 ['N/A', 'int', 'N/A', 'N/A'] 8 0 1886 92 29 35 0 223 117
sam_itr_queryi /src/htslib/sam.c 4 ['N/A', 'int', 'size_t', 'size_t'] 31 0 67 8 4 664 0 5932 89

Implementing fuzzers that target the above functions will improve reachability such that it becomes:

Functions statically reachable by fuzzers
67.0%
1164 / 1736
Cyclomatic complexity statically reachable by fuzzers
77.0%
13242 / 17271

All functions overview

If you implement fuzzers for these functions, the status of all functions in the project will be:

Func name Functions filename Args Function call depth Reached by Fuzzers Runtime reached by Fuzzers Combined reached by Fuzzers Fuzzers runtime hit Func lines hit % I Count BB Count Cyclomatic complexity Functions reached Reached by functions Accumulated cyclomatic complexity Undiscovered complexity

Runtime coverage analysis

This section shows analysis of runtime coverage data.

For futher technical details on how this section is generated, please see the Glossary .

Complex functions with low coverage

Func name Function total lines Lines covered at runtime percentage covered Reached by fuzzers
bgzf_compress 50 26 52.0% ['hts_open_fuzzer']
bgzf_flush 37 16 43.24% ['hts_open_fuzzer']
bgzf_check_EOF 34 9 26.47% ['hts_open_fuzzer']
bgzf_write_init 42 15 35.71% ['hts_open_fuzzer']
cache_block 38 7 18.42% ['hts_open_fuzzer']
cram_beta_encode_init 71 37 52.11% ['hts_open_fuzzer']
cram_dependent_data_series 227 20 8.810% ['hts_open_fuzzer']
cram_decode_slice 537 136 25.32% ['hts_open_fuzzer']
cram_next_slice 184 96 52.17% ['hts_open_fuzzer']
cram_get_seq 45 12 26.66% ['hts_open_fuzzer']
cram_drain_rqueue 50 4 8.0% ['hts_open_fuzzer']
cram_decode_slice_xref 110 7 6.363% ['hts_open_fuzzer']
cram_first_slice 42 21 50.0% ['hts_open_fuzzer']
lossy_read_names 57 6 10.52% ['hts_open_fuzzer']
cram_allocate_block 64 34 53.12% ['hts_open_fuzzer']
cram_block_method2str 36 15 41.66% ['hts_open_fuzzer']
cram_get_ref 117 28 23.93% ['hts_open_fuzzer']
cram_write_SAM_hdr 181 91 50.27% ['hts_open_fuzzer']
cram_set_voption 207 10 4.830% ['hts_open_fuzzer']
ltf8_put 67 22 32.83% ['hts_open_fuzzer']
cram_compress_by_method 106 35 33.01% ['hts_open_fuzzer']
cram_populate_ref 137 37 27.00% ['hts_open_fuzzer']
refs_load_fai 114 35 30.70% ['hts_open_fuzzer']
tokenise_search_path 59 17 28.81% ['hts_open_fuzzer']
open_path_mfile 48 23 47.91% ['hts_open_fuzzer']
expand_path 51 16 31.37% ['hts_open_fuzzer']
sam_hdr_count_lines 35 13 37.14% ['hts_open_fuzzer']
sam_hrecs_find_type_id 53 13 24.52% ['hts_open_fuzzer']
hread2 31 10 32.25% ['hts_open_fuzzer']
hseek 36 19 52.77% ['hts_open_fuzzer']
gcs_rewrite 64 32 50.0% ['hts_open_fuzzer']
add_callback_headers 35 17 48.57% ['hts_open_fuzzer']
get_auth_token 54 8 14.81% ['hts_open_fuzzer']
parse_va_list 62 31 50.0% ['hts_open_fuzzer']
easy_errno 59 10 16.94% ['hts_open_fuzzer']
s3_open_v4 71 29 40.84% ['hts_open_fuzzer']
parse_ini 33 6 18.18% ['hts_open_fuzzer']
hts_open_format 73 38 52.05% ['hts_open_fuzzer']
hts_idx_check_local 110 41 37.27% ['hts_open_fuzzer']
hts_idx_load3 32 7 21.87% ['hts_open_fuzzer']
format_category 34 14 41.17% ['hts_open_fuzzer']
idx_find_and_load 48 10 20.83% ['hts_open_fuzzer']
kh_resize_vdict 62 34 54.83% ['hts_open_fuzzer']
sam_state_destroy 81 5 6.172% ['hts_open_fuzzer']
sam_write1 127 20 15.74% ['hts_open_fuzzer']
sam_read1_sam 83 21 25.30% ['hts_open_fuzzer']
index_load 38 13 34.21% ['hts_open_fuzzer']
bcf_hdr_get_hrec 49 12 24.48% ['hts_open_fuzzer']
vcf_hdr_read 81 35 43.20% ['hts_open_fuzzer']
bcf1_sync 114 12 10.52% ['hts_open_fuzzer']
bcf_fmt_array1 45 11 24.44% ['hts_open_fuzzer']
get_rlen 195 79 40.51% ['hts_open_fuzzer']

Files and Directories in report

This section shows which files and directories are considered in this report. The main reason for showing this is fuzz introspector may include more code in the reasoning than is desired. This section helps identify if too many files/directories are included, e.g. third party code, which may be irrelevant for the threat model. In the event too much is included, fuzz introspector supports a configuration file that can exclude data from the report. See the following link for more information on how to create a config file: link

Files in report

Source file Reached by Covered by
[] []
/src/htslib/cram/mFILE.c ['hts_open_fuzzer'] []
/src/htslib/htscodecs/htscodecs/rANS_word.h [] []
/src/htslib/htscodecs/htscodecs/utils.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./hts_internal.h ['hts_open_fuzzer'] []
/src/htslib/sam.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/sam_mods.c [] []
/src/htslib/md5.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/rANS_static.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./htslib/hts_endian.h ['hts_open_fuzzer'] []
/src/htslib/cram/../htslib/kstring.h ['hts_open_fuzzer'] []
/usr/local/lib/clang/18/include/cpuid.h ['hts_open_fuzzer'] []
/src/htslib/./htslib/hfile.h ['hts_open_fuzzer'] []
/src/htslib/cram/../textutils_internal.h ['hts_open_fuzzer'] []
/src/htslib/hfile_libcurl.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/hfile_gcs.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/header.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./htslib/hts_expr.h ['hts_open_fuzzer'] []
/src/htslib/./htslib/hts.h ['hts_open_fuzzer'] []
/src/htslib/cram/../sam_internal.h ['hts_open_fuzzer'] []
/src/htslib/multipart.c ['hts_open_fuzzer'] []
/src/htslib/htscodecs/htscodecs/c_range_coder.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_codecs.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/pooled_alloc.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/region.c [] []
/src/htslib/cram/cram_stats.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/varint.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/tokenise_name3.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/open_trace_file.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./htslib/bgzf.h ['hts_open_fuzzer'] []
/src/htslib/htscodecs/htscodecs/pack.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_codecs.h [] []
/src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c [] []
/src/htslib/./htslib/khash_str2int.h [] []
/src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/htscodecs.c [] []
/src/htslib/cram/cram_structs.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c [] []
/src/htslib/textutils.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_index.c ['hts_open_fuzzer'] []
/src/htslib/htscodecs/htscodecs/c_simple_model.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c [] []
/src/htslib/./textutils_internal.h ['hts_open_fuzzer'] []
/src/htslib/simd.c [] []
/src/htslib/./htslib/vcf.h ['hts_open_fuzzer'] []
/src/htslib/./htslib/sam.h ['hts_open_fuzzer'] []
/src/htslib/cram/../header.h ['hts_open_fuzzer'] []
/src/htslib/hfile_s3.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/../htslib/hts_endian.h ['hts_open_fuzzer'] []
/src/htslib/./htslib/khash.h ['hts_open_fuzzer'] []
/src/htslib/htscodecs/htscodecs/rANS_byte.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/hts.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./hts_time_funcs.h [] []
/src/htslib/cram/cram_encode.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/arith_dynamic.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/bgzf.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/hfile_s3_write.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/hfile.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_io.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_decode.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/fqzcomp_qual.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/test/fuzz/hts_open_fuzzer.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/../htscodecs/htscodecs/varint.h [] ['hts_open_fuzzer']
/src/htslib/./htslib/kstring.h ['hts_open_fuzzer'] []
/src/htslib/./cram/../htslib/khash.h ['hts_open_fuzzer'] []
/src/htslib/./sam_internal.h ['hts_open_fuzzer'] []
/src/htslib/cram/string_alloc.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/pooled_alloc.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/thread_pool.c ['hts_open_fuzzer'] []
/src/htslib/./cram/cram_io.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/rle.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/tbx.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/faidx.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/rANS_static16_int.h [] []
/src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c [] []
/src/htslib/kstring.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/htscodecs/htscodecs/utils.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/cram_io.h ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/vcf.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/cram/../htslib/hfile.h ['hts_open_fuzzer'] []
/src/htslib/hts_expr.c ['hts_open_fuzzer'] ['hts_open_fuzzer']
/src/htslib/./header.h ['hts_open_fuzzer'] []

Directories in report

Directory
/src/htslib/./cram/../htslib/
/usr/local/lib/clang/18/include/
/src/htslib/cram/../htscodecs/htscodecs/
/src/htslib/
/src/htslib/cram/../
/src/htslib/cram/
/src/htslib/cram/../htslib/
/src/htslib/./
/src/htslib/test/fuzz/
/src/htslib/htscodecs/htscodecs/
/src/htslib/./cram/
/src/htslib/./htslib/