View results by: Directories | Files
| Path | Line Coverage | Function Coverage | Region Coverage |
|---|---|---|---|
src/htslib/bgzf.c |
22.14% (380/1716) |
28.38% (21/74) |
25.09% (339/1351) |
src/htslib/cram/cram_codecs.c |
16.10% (441/2739) |
15.34% (25/163) |
16.89% (352/2084) |
src/htslib/cram/cram_codecs.h |
0.00% (0/9) |
0.00% (0/1) |
0.00% (0/12) |
src/htslib/cram/cram_decode.c |
20.06% (529/2637) |
52.17% (12/23) |
21.67% (549/2534) |
src/htslib/cram/cram_encode.c |
0.00% (0/2800) |
0.00% (0/33) |
0.00% (0/2741) |
src/htslib/cram/cram_index.c |
0.00% (0/487) |
0.00% (0/15) |
0.00% (0/405) |
src/htslib/cram/cram_io.c |
31.58% (1258/3984) |
37.61% (41/109) |
31.82% (963/3026) |
src/htslib/cram/cram_io.h |
17.27% (24/139) |
18.18% (2/11) |
19.66% (23/117) |
src/htslib/cram/cram_stats.c |
0.00% (0/118) |
0.00% (0/5) |
0.00% (0/133) |
src/htslib/cram/mFILE.c |
0.00% (0/369) |
0.00% (0/27) |
0.00% (0/294) |
src/htslib/cram/open_trace_file.c |
0.00% (0/229) |
0.00% (0/7) |
0.00% (0/203) |
src/htslib/cram/pooled_alloc.c |
85.71% (60/70) |
83.33% (5/6) |
77.14% (27/35) |
src/htslib/cram/string_alloc.c |
96.88% (62/64) |
100.00% (6/6) |
80.49% (33/41) |
src/htslib/faidx.c |
0.00% (0/719) |
0.00% (0/36) |
0.00% (0/569) |
src/htslib/header.c |
38.03% (705/1854) |
44.07% (26/59) |
35.19% (676/1921) |
src/htslib/header.h |
100.00% (5/5) |
100.00% (1/1) |
100.00% (1/1) |
src/htslib/hfile.c |
45.44% (344/757) |
49.25% (33/67) |
39.62% (227/573) |
src/htslib/hfile_gcs.c |
12.94% (11/85) |
25.00% (1/4) |
2.56% (1/39) |
src/htslib/hfile_libcurl.c |
4.41% (47/1066) |
12.12% (4/33) |
2.41% (20/831) |
src/htslib/hfile_s3.c |
1.03% (10/972) |
2.70% (1/37) |
0.14% (1/691) |
src/htslib/hfile_s3_write.c |
7.25% (40/552) |
16.00% (4/25) |
4.78% (12/251) |
src/htslib/hts.c |
13.40% (476/3553) |
18.26% (21/115) |
12.34% (447/3623) |
src/htslib/hts_expr.c |
0.47% (3/633) |
4.55% (1/22) |
0.42% (3/722) |
src/htslib/hts_internal.h |
58.82% (10/17) |
100.00% (1/1) |
45.83% (22/48) |
src/htslib/hts_time_funcs.h |
0.00% (0/89) |
0.00% (0/5) |
0.00% (0/57) |
src/htslib/htscodecs/htscodecs/arith_dynamic.c |
41.16% (270/656) |
38.46% (5/13) |
41.75% (253/606) |
src/htslib/htscodecs/htscodecs/c_range_coder.h |
43.66% (31/71) |
35.71% (5/14) |
46.00% (23/50) |
src/htslib/htscodecs/htscodecs/c_simple_model.h |
75.38% (49/65) |
75.00% (3/4) |
75.51% (37/49) |
src/htslib/htscodecs/htscodecs/fqzcomp_qual.c |
30.52% (314/1029) |
45.45% (10/22) |
32.71% (279/853) |
src/htslib/htscodecs/htscodecs/htscodecs.c |
0.00% (0/3) |
0.00% (0/1) |
0.00% (0/2) |
src/htslib/htscodecs/htscodecs/pack.c |
46.69% (120/257) |
50.00% (2/4) |
46.82% (81/173) |
src/htslib/htscodecs/htscodecs/pooled_alloc.h |
0.00% (0/55) |
0.00% (0/4) |
0.00% (0/31) |
src/htslib/htscodecs/htscodecs/rANS_byte.h |
0.00% (0/240) |
0.00% (0/17) |
0.00% (0/67) |
src/htslib/htscodecs/htscodecs/rANS_static.c |
0.00% (0/550) |
0.00% (0/6) |
0.00% (0/403) |
src/htslib/htscodecs/htscodecs/rANS_static16_int.h |
42.02% (200/476) |
57.14% (8/14) |
51.44% (161/313) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr.c |
0.00% (0/484) |
0.00% (0/4) |
0.00% (0/410) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c |
56.20% (526/936) |
50.00% (3/6) |
61.41% (261/425) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c |
0.00% (0/623) |
0.00% (0/5) |
0.00% (0/287) |
src/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c |
0.00% (0/931) |
0.00% (0/4) |
0.00% (0/321) |
src/htslib/htscodecs/htscodecs/rANS_static4x16pr.c |
49.25% (525/1066) |
42.86% (6/14) |
48.79% (402/824) |
src/htslib/htscodecs/htscodecs/rANS_word.h |
15.07% (41/272) |
25.00% (4/16) |
28.95% (11/38) |
src/htslib/htscodecs/htscodecs/rle.c |
0.00% (0/117) |
0.00% (0/5) |
0.00% (0/70) |
src/htslib/htscodecs/htscodecs/tokenise_name3.c |
17.41% (180/1034) |
28.57% (10/35) |
16.00% (143/894) |
src/htslib/htscodecs/htscodecs/utils.c |
54.43% (43/79) |
60.00% (3/5) |
69.23% (45/65) |
src/htslib/htscodecs/htscodecs/utils.h |
13.62% (35/257) |
16.67% (1/6) |
30.33% (37/122) |
src/htslib/htscodecs/htscodecs/varint.h |
10.48% (26/248) |
8.33% (1/12) |
15.91% (21/132) |
src/htslib/htslib/cram.h |
0.00% (0/2) |
0.00% (0/2) |
0.00% (0/2) |
src/htslib/htslib/hfile.h |
54.29% (38/70) |
66.67% (6/9) |
63.83% (30/47) |
src/htslib/htslib/hts.h |
44.19% (19/43) |
40.00% (4/10) |
47.62% (10/21) |
src/htslib/htslib/hts_endian.h |
57.48% (73/127) |
83.33% (15/18) |
80.00% (24/30) |
src/htslib/htslib/hts_expr.h |
0.00% (0/16) |
0.00% (0/4) |
0.00% (0/15) |
src/htslib/htslib/khash.h |
81.76% (130/159) |
70.00% (7/10) |
83.91% (146/174) |
src/htslib/htslib/khash_str2int.h |
0.00% (0/56) |
0.00% (0/8) |
0.00% (0/34) |
src/htslib/htslib/ksort.h |
0.00% (0/183) |
0.00% (0/9) |
0.00% (0/122) |
src/htslib/htslib/kstring.h |
67.51% (133/197) |
68.42% (13/19) |
79.07% (68/86) |
src/htslib/htslib/sam.h |
72.20% (148/205) |
27.27% (3/11) |
80.00% (116/145) |
src/htslib/htslib/vcf.h |
73.83% (110/149) |
61.11% (11/18) |
85.00% (136/160) |
src/htslib/kstring.c |
52.49% (158/301) |
45.45% (5/11) |
43.55% (135/310) |
src/htslib/md5.c |
0.00% (0/183) |
0.00% (0/7) |
0.00% (0/158) |
src/htslib/multipart.c |
0.00% (0/148) |
0.00% (0/9) |
0.00% (0/148) |
src/htslib/region.c |
0.00% (0/157) |
0.00% (0/6) |
0.00% (0/158) |
src/htslib/sam.c |
27.83% (1352/4858) |
28.57% (46/161) |
29.49% (1485/5036) |
src/htslib/sam_internal.h |
81.40% (35/43) |
100.00% (3/3) |
95.00% (19/20) |
src/htslib/tbx.c |
4.35% (16/368) |
10.53% (2/19) |
1.84% (7/380) |
src/htslib/test/fuzz/hts_open_fuzzer.c |
67.65% (69/102) |
100.00% (4/4) |
78.33% (47/60) |
src/htslib/textutils.c |
10.48% (37/353) |
4.55% (1/22) |
12.46% (39/313) |
src/htslib/textutils_internal.h |
80.26% (122/152) |
60.00% (9/15) |
94.31% (116/123) |
src/htslib/thread_pool.c |
0.00% (0/618) |
0.00% (0/32) |
0.00% (0/386) |
src/htslib/vcf.c |
43.75% (1868/4270) |
43.51% (57/131) |
43.19% (2179/5045) |
Totals |
23.13% (11073/47872) |
27.66% (452/1634) |
24.17% (10007/41410) |