The followings are the branches where fuzzer fails to bypass.
Unique non-covered Complexity | Unique Reachable Complexities | Unique Reachable Functions | All non-covered Complexity | All Reachable Complexity | Function Name | Function Callsite | Blocked Branch |
---|---|---|---|---|---|---|---|
6470 | 6470 |
1 :
['cram_write_eof_block'] |
6496 | 7375 | cram_close | call site | /src/htslib/cram/cram_io.c:5504 |
6365 | 6365 |
2 :
['cram_update_curr_slice', 'cram_flush_container_mt'] |
17031 | 18109 | cram_close | call site | /src/htslib/cram/cram_io.c:5475 |
4170 | 4170 |
4 :
['cram_flush_result', 'hts_tpool_process_destroy', 'pthread_mutex_destroy', 'hts_tpool_process_flush'] |
10666 | 11545 | cram_close | call site | /src/htslib/cram/cram_io.c:5486 |
2787 | 2787 |
1 :
['hts_process_opts'] |
2795 | 2795 | hts_hopen | call site | /src/htslib/hts.c:1503 |
2701 | 2719 |
5 :
['strerror', '__errno_location', 'hts_opt_apply', 'hts_log', 'hclose_abruptly'] |
2701 | 2719 | hts_open_format | call site | /src/htslib/hts.c:900 |
1023 | 1079 |
10 :
['hts_idx_push', 'bcf_seqname_safe', 'float_to_le.1852', 'u32_to_le.1813', 'i32_to_le.1812', 'hts_log', 'u16_to_le.1814', 'bcf1_sync', 'bgzf_write', 'bcf_strerror'] |
1023 | 1079 | bcf_write | call site | /src/htslib/vcf.c:1970 |
734 | 734 |
1 :
['bcf_hdr_append'] |
734 | 734 | bcf_hdr_init | call site | /src/htslib/vcf.c:1209 |
630 | 640 |
10 :
['sam_hdr_tid2name', 'sam_hdr_find_tag_id', 'cram_get_block_by_id', 'ks_free.2171', 'hts_md5_update', 'hts_md5_destroy', 'md5_print', 'memcmp', 'hts_md5_init', 'hts_md5_final'] |
3627 | 3917 | cram_decode_slice | call site | /src/htslib/cram/cram_decode.c:2395 |
410 | 7682 |
19 :
['free', 'cram_read_container', 'hts_tpool_process_len', 'cram_seek', 'cram_free_slice', 'pthread_mutex_unlock', 'hts_log', 'cram_free_container', 'sam_hrecs_sort_order', 'hts_tpool_result_data', 'cram_decode_compression_header', 'cram_read_block', 'hts_tpool_next_result_wait', 'pthread_mutex_lock', 'hts_tpool_delete_result', 'cram_decode_slice_mt', 'cram_read_slice', 'hts_tpool_process_qsize', 'hts_tpool_process_empty'] |
410 | 7682 | cram_next_slice | call site | /src/htslib/cram/cram_decode.c:3228 |
394 | 394 |
2 :
['bgzf_flush_try', 'bgzf_write'] |
717 | 767 | sam_write1 | call site | /src/htslib/sam.c:4462 |
394 | 394 |
2 :
['bgzf_flush_try', 'bgzf_write'] |
535 | 545 | vcf_write | call site | /src/htslib/vcf.c:3444 |
387 | 387 |
2 :
['bgzf_flush', 'bgzf_write'] |
387 | 387 | vcf_hdr_write | call site | /src/htslib/vcf.c:2267 |
LLVMFuzzerTestOneInput
[function]
[call site]
00000
abort
[call site]
00001
hopen
[function]
[call site]
00002
find_scheme_handler
[function]
[call site]
00003
isalnum_c
[function]
[call site]
00004
__ctype_b_loc
[call site]
00005
tolower_c
[function]
[call site]
00006
tolower
[call site]
00007
pthread_mutex_lock
[call site]
00008
load_hfile_plugins
[function]
[call site]
00009
kh_init_scheme_string
[function]
[call site]
00010
calloc
[call site]
00011
hfile_add_scheme_handler
[function]
[call site]
00012
try_exe_add_scheme_handler
[function]
[call site]
00013
hts_log
[function]
[call site]
00014
__errno_location
[call site]
00015
get_severity_tag
[function]
[call site]
00016
fprintf
[call site]
00017
vfprintf
[call site]
00018
fprintf
[call site]
00019
__errno_location
[call site]
00020
kh_put_scheme_string
[function]
[call site]
00021
kh_resize_scheme_string
[function]
[call site]
00022
__ac_X31_hash_string
[function]
[call site]
00023
__errno_location
[call site]
00024
hts_log
[function]
[call site]
00025
priority
[function]
[call site]
00026
hfile_add_scheme_handler
[function]
[call site]
00027
hfile_add_scheme_handler
[function]
[call site]
00028
init_add_plugin
[function]
[call site]
00029
hts_log
[function]
[call site]
00030
hts_log
[function]
[call site]
00031
hts_log
[function]
[call site]
00032
init_add_plugin
[function]
[call site]
00033
init_add_plugin
[function]
[call site]
00034
hfile_plugin_init_libcurl
[function]
[call site]
00035
hts_version
[function]
[call site]
00036
curl_global_init
[call site]
00037
easy_errno
[function]
[call site]
00038
curl_easy_getinfo
[call site]
00039
curl_easy_getinfo
[call site]
00040
http_status_errno
[function]
[call site]
00041
curl_easy_strerror
[call site]
00042
hts_log
[function]
[call site]
00043
__errno_location
[call site]
00044
curl_share_init
[call site]
00045
curl_global_cleanup
[call site]
00046
curl_share_setopt
[call site]
00047
share_lock
[function]
[call site]
00048
pthread_mutex_lock
[call site]
00049
curl_share_setopt
[call site]
00050
share_unlock
[function]
[call site]
00051
pthread_mutex_unlock
[call site]
00052
curl_share_setopt
[call site]
00053
curl_share_cleanup
[call site]
00054
curl_global_cleanup
[call site]
00055
__errno_location
[call site]
00056
getenv
[call site]
00057
strdup
[call site]
00058
kh_init_auth_map
[function]
[call site]
00059
calloc
[call site]
00060
__errno_location
[call site]
00061
kh_destroy_auth_map
[function]
[call site]
00062
curl_share_cleanup
[call site]
00063
curl_global_cleanup
[call site]
00064
__errno_location
[call site]
00065
getenv
[call site]
00066
strcmp
[call site]
00067
curl_version_info
[call site]
00068
ksprintf
[function]
[call site]
00069
kvsprintf
[function]
[call site]
00070
kputd
[function]
[call site]
00071
kputsn
[function]
[call site]
00072
ks_resize
[function]
[call site]
00073
realloc
[call site]
00074
kputsn
[function]
[call site]
00075
kputc
[function]
[call site]
00076
ks_resize
[function]
[call site]
00077
ks_resize
[function]
[call site]
00078
sprintf
[call site]
00079
strlen
[call site]
00080
kputsn
[function]
[call site]
00081
vsnprintf
[call site]
00082
ks_resize
[function]
[call site]
00083
vsnprintf
[call site]
00084
libcurl_exit
[function]
[call site]
00085
curl_share_cleanup
[call site]
00086
free_auth
[function]
[call site]
00087
pthread_mutex_destroy
[call site]
00088
kh_destroy_auth_map
[function]
[call site]
00089
curl_global_cleanup
[call site]
00090
hfile_add_scheme_handler
[function]
[call site]
00091
init_add_plugin
[function]
[call site]
00092
hfile_plugin_init_gcs
[function]
[call site]
00093
hfile_add_scheme_handler
[function]
[call site]
00094
hfile_add_scheme_handler
[function]
[call site]
00095
hfile_add_scheme_handler
[function]
[call site]
00096
init_add_plugin
[function]
[call site]
00097
hfile_plugin_init_s3
[function]
[call site]
00098
hfile_add_scheme_handler
[function]
[call site]
00099
hfile_add_scheme_handler
[function]
[call site]
00100
hfile_add_scheme_handler
[function]
[call site]
00101
init_add_plugin
[function]
[call site]
00102
hfile_plugin_init_s3_write
[function]
[call site]
00103
hts_version
[function]
[call site]
00104
curl_global_init
[call site]
00105
curl_share_init
[call site]
00106
curl_global_cleanup
[call site]
00107
__errno_location
[call site]
00108
curl_share_setopt
[call site]
00109
share_lock
[function]
[call site]
00110
pthread_mutex_lock
[call site]
00111
curl_share_setopt
[call site]
00112
share_unlock
[function]
[call site]
00113
pthread_mutex_unlock
[call site]
00114
curl_share_setopt
[call site]
00115
curl_share_cleanup
[call site]
00116
curl_global_cleanup
[call site]
00117
__errno_location
[call site]
00118
curl_version_info
[call site]
00119
ksprintf
[function]
[call site]
00120
s3_write_exit
[function]
[call site]
00121
curl_share_cleanup
[call site]
00122
curl_global_cleanup
[call site]
00123
hfile_add_scheme_handler
[function]
[call site]
00124
hfile_add_scheme_handler
[function]
[call site]
00125
hfile_add_scheme_handler
[function]
[call site]
00126
atexit
[call site]
00127
hfile_exit
[function]
[call site]
00128
hfile_shutdown
[function]
[call site]
00129
pthread_mutex_lock
[call site]
00130
kh_destroy_scheme_string
[function]
[call site]
00131
pthread_mutex_unlock
[call site]
00132
pthread_mutex_destroy
[call site]
00133
pthread_mutex_unlock
[call site]
00134
pthread_mutex_unlock
[call site]
00135
kh_get_scheme_string
[function]
[call site]
00136
strchr
[call site]
00137
strcmp
[call site]
00138
hopen_fd_stdinout
[function]
[call site]
00139
strchr
[call site]
00140
hdopen
[function]
[call site]
00141
blksize
[function]
[call site]
00142
fstat
[call site]
00143
strchr
[call site]
00144
hopen_fd
[function]
[call site]
00145
hfile_oflags
[function]
[call site]
00146
open
[call site]
00147
blksize
[function]
[call site]
00148
__errno_location
[call site]
00149
hfile_destroy
[function]
[call site]
00150
__errno_location
[call site]
00151
__errno_location
[call site]
00152
hts_hopen
[function]
[call site]
00153
calloc
[call site]
00154
strdup
[call site]
00155
ed_is_big
[function]
[call site]
00156
strchr
[call site]
00157
strncpy
[call site]
00158
strncpy
[call site]
00159
strchr
[call site]
00160
hts_detect_format2
[function]
[call site]
00161
hpeek
[function]
[call site]
00162
refill_buffer
[function]
[call site]
00163
__errno_location
[call site]
00164
memcmp
[call site]
00165
memcmp
[call site]
00166
decompress_peek_gz
[function]
[call site]
00167
hpeek
[function]
[call site]
00168
inflateInit2_
[call site]
00169
inflate
[call site]
00170
inflateEnd
[call site]
00171
memcmp
[call site]
00172
memcmp
[call site]
00173
memcmp
[call site]
00174
memcmp
[call site]
00175
decompress_peek_xz
[function]
[call site]
00176
hpeek
[function]
[call site]
00177
lzma_easy_decoder_memusage
[call site]
00178
lzma_code
[call site]
00179
lzma_end
[call site]
00180
lzma_end
[call site]
00181
memcmp
[call site]
00182
hpeek
[function]
[call site]
00183
strcmp
[call site]
00184
find_file_extension
[function]
[call site]
00185
strstr
[call site]
00186
strlen
[call site]
00187
tolower_c
[function]
[call site]
00188
memcmp
[call site]
00189
memcmp
[call site]
00190
memcmp
[call site]
00191
memcmp
[call site]
00192
memcmp
[call site]
00193
memcmp
[call site]
00194
memcmp
[call site]
00195
strcmp
[call site]
00196
memcmp
[call site]
00197
parse_version
[function]
[call site]
00198
isdigit_c
[function]
[call site]
00199
isdigit_c
[function]
[call site]
00200
memcmp
[call site]
00201
memcmp
[call site]
00202
memcmp
[call site]
00203
memcmp
[call site]
00204
parse_version
[function]
[call site]
00205
memcmp
[call site]
00206
cmp_nonblank
[function]
[call site]
00207
isspace_c
[function]
[call site]
00208
__ctype_b_loc
[call site]
00209
memcmp
[call site]
00210
is_fastaq
[function]
[call site]
00211
is_fastaq
[function]
[call site]
00215
parse_tabbed_text
[function]
[call site]
00216
isdigit_c
[function]
[call site]
00217
strchr
[call site]
00218
isdigit_c
[function]
[call site]
00219
colmatch
[function]
[call site]
00220
colmatch
[function]
[call site]
00221
strstr
[call site]
00222
colmatch
[function]
[call site]
00223
strstr
[call site]
00224
colmatch
[function]
[call site]
00225
colmatch
[function]
[call site]
00226
is_text_only
[function]
[call site]
00227
__errno_location
[call site]
00228
hopen_htsget_redirect
[function]
[call site]
00229
hfile_init
[function]
[call site]
00230
strchr
[call site]
00231
hfile_destroy
[function]
[call site]
00232
parse_ga4gh_redirect_json
[function]
[call site]
00233
hts_json_fnext
[function]
[call site]
00234
hgetc
[function]
[call site]
00235
hgetc2
[function]
[call site]
00236
refill_buffer
[function]
[call site]
00237
fscan_string
[function]
[call site]
00238
hgetc
[function]
[call site]
00239
hgetc
[function]
[call site]
00240
kputc
[function]
[call site]
00241
kputc
[function]
[call site]
00242
kputc
[function]
[call site]
00243
kputc
[function]
[call site]
00244
kputc
[function]
[call site]
00245
kputc
[function]
[call site]
00246
hgetc
[function]
[call site]
00247
dehex
[function]
[call site]
00248
hgetc
[function]
[call site]
00249
dehex
[function]
[call site]
00250
hgetc
[function]
[call site]
00251
dehex
[function]
[call site]
00252
hgetc
[function]
[call site]
00253
dehex
[function]
[call site]
00254
encode_utf8
[function]
[call site]
00255
kputsn
[function]
[call site]
00256
kputc
[function]
[call site]
00257
kputsn
[function]
[call site]
00258
kputc
[function]
[call site]
00259
hpeek
[function]
[call site]
00260
strchr
[call site]
00261
hgetc
[function]
[call site]
00262
kputc
[function]
[call site]
00263
token_type
[function]
[call site]
00264
hts_json_fnext
[function]
[call site]
00268
strcmp
[call site]
00269
parse_ga4gh_body_json
[function]
[call site]
00270
hts_json_fnext
[function]
[call site]
00271
hts_json_fnext
[function]
[call site]
00272
strcmp
[call site]
00273
hts_json_fnext
[function]
[call site]
00274
hts_json_fnext
[function]
[call site]
00275
hts_realloc_or_die
[function]
[call site]
00276
__errno_location
[call site]
00277
realloc
[call site]
00278
__errno_location
[call site]
00279
hts_log
[function]
[call site]
00280
exit
[call site]
00281
hts_json_fnext
[function]
[call site]
00282
hts_json_fnext
[function]
[call site]
00283
kputs
[function]
[call site]
00284
__errno_location
[call site]
00285
strlen
[call site]
00286
kputsn
[function]
[call site]
00287
kputs
[function]
[call site]
00288
hts_realloc_or_die
[function]
[call site]
00289
ks_release
[function]
[call site]
00290
hts_json_fskip_value
[function]
[call site]
00291
skip_value
[function]
[call site]
00292
strcmp
[call site]
00293
hts_json_fnext
[function]
[call site]
00294
hts_log
[function]
[call site]
00295
hts_json_fskip_value
[function]
[call site]
00296
hts_json_fnext
[function]
[call site]
00297
free_all_parts
[function]
[call site]
00298
free_part
[function]
[call site]
00299
hfile_destroy
[function]
[call site]
00300
__errno_location
[call site]
00301
hts_crypt4gh_redirect
[function]
[call site]
00302
hts_detect_format2
[function]
[call site]
00306
strchr
[call site]
00307
strchr
[call site]
00308
strchr
[call site]
00309
strchr
[call site]
00310
strchr
[call site]
00311
strchr
[call site]
00312
strchr
[call site]
00313
strchr
[call site]
00314
abort
[call site]
00315
format_category
[function]
[call site]
00316
__errno_location
[call site]
00317
bgzf_hopen
[function]
[call site]
00318
bgzf_read_init
[function]
[call site]
00319
hpeek
[function]
[call site]
00320
calloc
[call site]
00321
memcmp
[call site]
00322
memcmp
[call site]
00323
hts_log
[function]
[call site]
00324
razf_info
[function]
[call site]
00325
strcmp
[call site]
00326
hseek
[function]
[call site]
00327
writebuffer_is_nonempty
[function]
[call site]
00328
flush_buffer
[function]
[call site]
00329
__errno_location
[call site]
00330
htell
[function]
[call site]
00331
__errno_location
[call site]
00332
__errno_location
[call site]
00333
__errno_location
[call site]
00334
hread
[function]
[call site]
00335
hread2
[function]
[call site]
00336
__errno_location
[call site]
00337
refill_buffer
[function]
[call site]
00338
ed_is_big
[function]
[call site]
00339
hts_log
[function]
[call site]
00340
hts_log
[function]
[call site]
00341
__errno_location
[call site]
00342
kh_init_cache
[function]
[call site]
00343
calloc
[call site]
00344
strchr
[call site]
00345
bgzf_write_init
[function]
[call site]
00346
calloc
[call site]
00347
mode2level
[function]
[call site]
00348
strchr
[call site]
00349
strchr
[call site]
00350
deflateInit2_
[call site]
00351
bgzf_zerr
[function]
[call site]
00352
__errno_location
[call site]
00353
snprintf
[call site]
00354
hts_log
[function]
[call site]
00355
__errno_location
[call site]
00356
hts_log
[function]
[call site]
00357
__errno_location
[call site]
00358
ed_is_big
[function]
[call site]
00359
cram_dopen
[function]
[call site]
00360
calloc
[call site]
00361
cram_read_file_def
[function]
[call site]
00362
hread
[function]
[call site]
00363
memcmp
[call site]
00364
hts_log
[function]
[call site]
00365
cram_init_tables
[function]
[call site]
00366
cram_init_varint
[function]
[call site]
00367
uint7_get_32
[function]
[call site]
00368
var_get_u32
[function]
[call site]
00369
sint7_get_32
[function]
[call site]
00370
var_get_s32
[function]
[call site]
00371
var_get_u32
[function]
[call site]
00372
uint7_get_64
[function]
[call site]
00373
var_get_u64
[function]
[call site]
00374
sint7_get_64
[function]
[call site]
00375
var_get_s64
[function]
[call site]
00376
var_get_u64
[function]
[call site]
00377
uint7_put_32
[function]
[call site]
00378
var_put_u32
[function]
[call site]
00379
var_put_u32_safe
[function]
[call site]
00380
sint7_put_32
[function]
[call site]
00381
var_put_s32
[function]
[call site]
00382
var_put_u32
[function]
[call site]
00383
uint7_put_64
[function]
[call site]
00384
var_put_u64
[function]
[call site]
00385
var_put_u64_safe
[function]
[call site]
00386
sint7_put_64
[function]
[call site]
00387
var_put_s64
[function]
[call site]
00388
var_put_u64
[function]
[call site]
00389
uint7_put_blk_32
[function]
[call site]
00390
var_put_u32
[function]
[call site]
00391
block_append
[function]
[call site]
00392
block_grow
[function]
[call site]
00393
block_resize
[function]
[call site]
00394
block_resize_exact
[function]
[call site]
00395
realloc
[call site]
00396
sint7_put_blk_32
[function]
[call site]
00397
var_put_s32
[function]
[call site]
00398
block_append
[function]
[call site]
00399
uint7_put_blk_64
[function]
[call site]
00400
var_put_u64
[function]
[call site]
00401
block_append
[function]
[call site]
00402
sint7_put_blk_64
[function]
[call site]
00403
var_put_s64
[function]
[call site]
00404
block_append
[function]
[call site]
00405
uint7_size
[function]
[call site]
00406
var_size_u64
[function]
[call site]
00407
uint7_decode_crc32
[function]
[call site]
00408
hgetc
[function]
[call site]
00409
crc32
[call site]
00410
sint7_decode_crc32
[function]
[call site]
00411
hgetc
[function]
[call site]
00412
crc32
[call site]
00413
uint7_decode_crc64
[function]
[call site]
00414
hgetc
[function]
[call site]
00415
crc32
[call site]
00416
safe_itf8_get
[function]
[call site]
00417
safe_itf8_get
[function]
[call site]
00418
safe_ltf8_get
[function]
[call site]
00419
safe_ltf8_get
[function]
[call site]
00420
safe_itf8_put
[function]
[call site]
00421
itf8_put
[function]
[call site]
00422
safe_itf8_put
[function]
[call site]
00423
safe_ltf8_put
[function]
[call site]
00424
ltf8_put
[function]
[call site]
00425
safe_ltf8_put
[function]
[call site]
00426
itf8_put_blk
[function]
[call site]
00427
itf8_put
[function]
[call site]
00428
block_append
[function]
[call site]
00429
itf8_put_blk
[function]
[call site]
00430
ltf8_put_blk
[function]
[call site]
00431
ltf8_put
[function]
[call site]
00432
block_append
[function]
[call site]
00433
ltf8_put_blk
[function]
[call site]
00434
itf8_size
[function]
[call site]
00435
itf8_decode_crc
[function]
[call site]
00436
hgetc
[function]
[call site]
00437
hread
[function]
[call site]
00438
crc32
[call site]
00439
crc32
[call site]
00440
crc32
[call site]
00441
itf8_decode_crc
[function]
[call site]
00442
ltf8_decode_crc
[function]
[call site]
00443
hgetc
[function]
[call site]
00444
crc32
[call site]
00445
hgetc
[function]
[call site]
00446
crc32
[call site]
00447
hread
[function]
[call site]
00448
crc32
[call site]
00449
hread
[function]
[call site]
00450
crc32
[call site]
00451
hread
[function]
[call site]
00452
hread
[function]
[call site]
00453
crc32
[call site]
00454
hread
[function]
[call site]
00455
crc32
[call site]
00456
hread
[function]
[call site]
00457
crc32
[call site]
00458
hread
[function]
[call site]
00459
crc32
[call site]
00460
cram_read_SAM_hdr
[function]
[call site]
00461
int32_decode
[function]
[call site]
00462
hread
[function]
[call site]
00463
hread
[function]
[call site]
00464
cram_read_container
[function]
[call site]
00465
int32_decode
[function]
[call site]
00466
crc32
[call site]
00467
calloc
[call site]
00468
__errno_location
[call site]
00469
cram_free_container
[function]
[call site]
00470
cram_free_compression_header
[function]
[call site]
00471
kh_destroy_map
[function]
[call site]
00472
cram_free_block
[function]
[call site]
00473
kh_destroy_m_s2i
[function]
[call site]
00474
string_pool_destroy
[function]
[call site]
00475
cram_free_block
[function]
[call site]
00476
cram_free_slice
[function]
[call site]
00477
cram_free_block
[function]
[call site]
00478
cram_free_block
[function]
[call site]
00479
cram_free_slice_header
[function]
[call site]
00480
cram_free_block
[function]
[call site]
00481
cram_free_block
[function]
[call site]
00482
cram_free_block
[function]
[call site]
00483
cram_free_block
[function]
[call site]
00484
cram_free_block
[function]
[call site]
00485
cram_free_block
[function]
[call site]
00486
string_pool_destroy
[function]
[call site]
00487
kh_destroy_m_s2i
[function]
[call site]
00488
kh_destroy_m_s2i
[function]
[call site]
00489
cram_free_slice
[function]
[call site]
00490
cram_stats_free
[function]
[call site]
00491
kh_destroy_m_i2i
[function]
[call site]
00492
kh_destroy_m_tagmap
[function]
[call site]
00493
cram_free_container
[function]
[call site]
00494
int32_decode
[function]
[call site]
00495
cram_free_container
[function]
[call site]
00496
hts_log
[function]
[call site]
00497
cram_free_container
[function]
[call site]
00498
cram_free_container
[function]
[call site]
00499
cram_read_block
[function]
[call site]
00500
hgetc
[function]
[call site]
00501
crc32
[call site]
00502
hgetc
[function]
[call site]
00503
crc32
[call site]
00504
hread
[function]
[call site]
00505
hread
[function]
[call site]
00506
int32_decode
[function]
[call site]
00507
cram_free_container
[function]
[call site]
00508
cram_uncompress_block
[function]
[call site]
00509
crc32
[call site]
00510
hts_log
[function]
[call site]
00511
__assert_fail
[call site]
00512
zlib_mem_inflate
[function]
[call site]
00513
inflateInit2_
[call site]
00514
hts_log
[function]
[call site]
00515
inflate
[call site]
00516
hts_log
[function]
[call site]
00517
inflateEnd
[call site]
00518
realloc
[call site]
00519
inflateEnd
[call site]
00520
inflateEnd
[call site]
00521
BZ2_bzBuffToBuffDecompress
[call site]
00522
lzma_mem_inflate
[function]
[call site]
00523
lzma_easy_decoder_memusage
[call site]
00524
realloc
[call site]
00525
lzma_code
[call site]
00526
hts_log
[function]
[call site]
00527
lzma_code
[call site]
00528
hts_log
[function]
[call site]
00529
realloc
[call site]
00530
lzma_end
[call site]
00531
lzma_end
[call site]
00532
rans_uncompress
[function]
[call site]
00533
rans_uncompress_O1
[function]
[call site]
00534
htscodecs_tls_calloc
[function]
[call site]
00535
htscodecs_tls_alloc
[function]
[call site]
00536
pthread_once
[call site]
00537
htscodecs_tls_init
[function]
[call site]
00538
pthread_key_create
[call site]
00539
htscodecs_tls_free_all
[function]
[call site]
00540
fprintf
[call site]
00541
pthread_getspecific
[call site]
00542
calloc
[call site]
00543
pthread_setspecific
[call site]
00544
fprintf
[call site]
00545
calloc
[call site]
00546
RansDecSymbolInit32
[function]
[call site]
00547
__assert_fail
[call site]
00548
__assert_fail
[call site]
00549
RansDecInit
[function]
[call site]
00550
RansDecInit
[function]
[call site]
00551
RansDecInit
[function]
[call site]
00552
RansDecInit
[function]
[call site]
00553
RansDecAdvanceStep
[function]
[call site]
00554
RansDecAdvanceStep
[function]
[call site]
00555
RansDecAdvanceStep
[function]
[call site]
00556
RansDecAdvanceStep
[function]
[call site]
00557
RansDecRenorm2
[function]
[call site]
00558
RansDecRenorm2
[function]
[call site]
00559
RansDecRenormSafe
[function]
[call site]
00560
RansDecRenormSafe
[function]
[call site]
00561
RansDecRenormSafe
[function]
[call site]
00562
RansDecRenormSafe
[function]
[call site]
00563
RansDecGet
[function]
[call site]
00564
RansDecRenormSafe
[function]
[call site]
00565
htscodecs_tls_free
[function]
[call site]
00566
rans_uncompress_O0
[function]
[call site]
00570
RansDecInit
[function]
[call site]
00571
RansDecInit
[function]
[call site]
00572
RansDecInit
[function]
[call site]
00573
RansDecInit
[function]
[call site]
00574
RansDecRenorm2
[function]
[call site]
00575
RansDecRenorm2
[function]
[call site]
00576
RansDecRenormSafe
[function]
[call site]
00577
RansDecRenormSafe
[function]
[call site]
00578
RansDecRenormSafe
[function]
[call site]
00579
RansDecRenormSafe
[function]
[call site]
00580
fqz_decompress
[function]
[call site]
00581
uncompress_block_fqz2f
[function]
[call site]
00582
var_get_u32
[function]
[call site]
00583
fqz_read_parameters
[function]
[call site]
00584
read_array
[function]
[call site]
00585
fqz_read_parameters1
[function]
[call site]
00586
read_array
[function]
[call site]
00587
read_array
[function]
[call site]
00588
read_array
[function]
[call site]
00589
fqz_free_parameters
[function]
[call site]
00590
fqz_create_models
[function]
[call site]
00591
htscodecs_tls_alloc
[function]
[call site]
00592
SIMPLE_MODEL256_init
[function]
[call site]
00593
SIMPLE_MODEL256_init
[function]
[call site]
00594
SIMPLE_MODEL2_init
[function]
[call site]
00595
SIMPLE_MODEL2_init
[function]
[call site]
00596
SIMPLE_MODEL256_init
[function]
[call site]
00597
RC_SetInput
[function]
[call site]
00598
RC_StartDecode
[function]
[call site]
00599
realloc
[call site]
00600
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00601
RC_GetFreq
[function]
[call site]
00602
RC_Decode
[function]
[call site]
00603
SIMPLE_MODEL256_normalize
[function]
[call site]
00604
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00605
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00606
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00607
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00608
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00609
SIMPLE_MODEL2_decodeSymbol
[function]
[call site]
00610
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00611
fqz_update_ctx
[function]
[call site]
00612
realloc
[call site]
00613
realloc
[call site]
00614
RC_FinishDecode
[function]
[call site]
00615
fqz_destroy_models
[function]
[call site]
00616
htscodecs_tls_free
[function]
[call site]
00617
fqz_free_parameters
[function]
[call site]
00618
fqz_destroy_models
[function]
[call site]
00619
fqz_free_parameters
[function]
[call site]
00620
rans_uncompress_4x16
[function]
[call site]
00621
rans_uncompress_to_4x16
[function]
[call site]
00622
var_get_u32
[function]
[call site]
00623
var_get_u32
[function]
[call site]
00624
rans_uncompress_to_4x16
[function]
[call site]
00625
unstripe
[function]
[call site]
00626
var_get_u32
[function]
[call site]
00627
hts_unpack_meta
[function]
[call site]
00628
var_get_u32
[function]
[call site]
00629
var_get_u32
[function]
[call site]
00630
var_get_u32
[function]
[call site]
00631
var_get_u32
[function]
[call site]
00632
rans_dec_func
[function]
[call site]
00633
__get_cpuid_max
[function]
[call site]
00634
rans_uncompress_O1_32x16_avx512
[function]
[call site]
00635
htscodecs_tls_alloc
[function]
[call site]
00636
var_get_u32
[function]
[call site]
00637
var_get_u32
[function]
[call site]
00638
rans_uncompress_O0_4x16
[function]
[call site]
00639
decode_freq
[function]
[call site]
00640
decode_alphabet
[function]
[call site]
00641
var_get_u32
[function]
[call site]
00642
RansDecInit
[function]
[call site]
00643
RansDecInit
[function]
[call site]
00644
RansDecInit
[function]
[call site]
00645
RansDecInit
[function]
[call site]
00646
RansDecGet
[function]
[call site]
00647
RansDecGet
[function]
[call site]
00648
RansDecGet
[function]
[call site]
00649
RansDecGet
[function]
[call site]
00650
RansDecRenorm
[function]
[call site]
00651
RansDecRenorm
[function]
[call site]
00652
RansDecRenorm
[function]
[call site]
00653
RansDecRenorm
[function]
[call site]
00654
RansDecGet
[function]
[call site]
00655
RansDecRenormSafe
[function]
[call site]
00656
decode_freq1
[function]
[call site]
00657
decode_alphabet
[function]
[call site]
00658
decode_freq_d
[function]
[call site]
00659
var_get_u32
[function]
[call site]
00660
normalise_freq_shift
[function]
[call site]
00661
RansDecInit
[function]
[call site]
00662
transpose_and_copy
[function]
[call site]
00663
rot32_simd
[function]
[call site]
00664
_mm256_set_m128ix
[function]
[call site]
00665
_mm256_set_m128ix
[function]
[call site]
00666
_mm256_set_m128ix
[function]
[call site]
00667
_mm256_set_m128ix
[function]
[call site]
00668
RansDecRenormSafe
[function]
[call site]
00669
RansDecRenormSafe
[function]
[call site]
00670
transpose_and_copy
[function]
[call site]
00671
RansDecRenormSafe
[function]
[call site]
00672
RansDecRenormSafe
[function]
[call site]
00673
htscodecs_tls_free
[function]
[call site]
00674
htscodecs_tls_free
[function]
[call site]
00675
rans_uncompress_O1_32x16_avx2
[function]
[call site]
00676
htscodecs_tls_alloc
[function]
[call site]
00677
var_get_u32
[function]
[call site]
00678
var_get_u32
[function]
[call site]
00679
rans_uncompress_O0_4x16
[function]
[call site]
00680
decode_freq1
[function]
[call site]
00681
RansDecInit
[function]
[call site]
00682
transpose_and_copy
[function]
[call site]
00683
rot32_simd
[function]
[call site]
00684
RansDecRenormSafe
[function]
[call site]
00685
RansDecRenormSafe
[function]
[call site]
00686
transpose_and_copy
[function]
[call site]
00687
RansDecRenormSafe
[function]
[call site]
00688
RansDecRenormSafe
[function]
[call site]
00689
htscodecs_tls_free
[function]
[call site]
00690
htscodecs_tls_free
[function]
[call site]
00691
rans_uncompress_O1_32x16_sse4
[function]
[call site]
00692
htscodecs_tls_alloc
[function]
[call site]
00693
var_get_u32
[function]
[call site]
00694
var_get_u32
[function]
[call site]
00695
rans_uncompress_O0_4x16
[function]
[call site]
00696
decode_freq1
[function]
[call site]
00697
RansDecInit
[function]
[call site]
00698
_mm_i32gather_epi32x
[function]
[call site]
00699
_mm_i32gather_epi32x
[function]
[call site]
00700
_mm_i32gather_epi32x
[function]
[call site]
00701
_mm_i32gather_epi32x
[function]
[call site]
00702
_mm_i32gather_epi32x
[function]
[call site]
00703
_mm_i32gather_epi32x
[function]
[call site]
00704
_mm_i32gather_epi32x
[function]
[call site]
00705
_mm_i32gather_epi32x
[function]
[call site]
00706
transpose_and_copy
[function]
[call site]
00707
RansDecRenormSafe
[function]
[call site]
00708
RansDecRenormSafe
[function]
[call site]
00709
_mm_i32gather_epi32x
[function]
[call site]
00710
_mm_i32gather_epi32x
[function]
[call site]
00711
_mm_i32gather_epi32x
[function]
[call site]
00712
_mm_i32gather_epi32x
[function]
[call site]
00713
_mm_i32gather_epi32x
[function]
[call site]
00714
_mm_i32gather_epi32x
[function]
[call site]
00715
_mm_i32gather_epi32x
[function]
[call site]
00716
_mm_i32gather_epi32x
[function]
[call site]
00717
transpose_and_copy
[function]
[call site]
00718
RansDecRenormSafe
[function]
[call site]
00719
RansDecRenormSafe
[function]
[call site]
00720
htscodecs_tls_free
[function]
[call site]
00721
htscodecs_tls_free
[function]
[call site]
00722
rans_uncompress_O1_32x16
[function]
[call site]
00723
htscodecs_tls_alloc
[function]
[call site]
00724
var_get_u32
[function]
[call site]
00725
var_get_u32
[function]
[call site]
00726
rans_uncompress_O0_4x16
[function]
[call site]
00727
decode_freq1
[function]
[call site]
00728
RansDecInit
[function]
[call site]
00729
RansDecRenorm
[function]
[call site]
00730
RansDecRenorm
[function]
[call site]
00731
RansDecRenorm
[function]
[call site]
00732
RansDecRenorm
[function]
[call site]
00733
RansDecRenormSafe
[function]
[call site]
00734
RansDecRenormSafe
[function]
[call site]
00735
RansDecRenormSafe
[function]
[call site]
00736
RansDecRenormSafe
[function]
[call site]
00737
RansDecRenormSafe
[function]
[call site]
00738
RansDecRenorm
[function]
[call site]
00739
RansDecRenorm
[function]
[call site]
00740
RansDecRenorm
[function]
[call site]
00741
RansDecRenorm
[function]
[call site]
00742
RansDecRenormSafe
[function]
[call site]
00743
RansDecRenormSafe
[function]
[call site]
00744
RansDecRenormSafe
[function]
[call site]
00745
RansDecRenormSafe
[function]
[call site]
00746
RansDecRenormSafe
[function]
[call site]
00747
htscodecs_tls_free
[function]
[call site]
00748
htscodecs_tls_free
[function]
[call site]
00749
rans_uncompress_O0_32x16_avx512
[function]
[call site]
00750
decode_freq
[function]
[call site]
00751
normalise_freq_shift
[function]
[call site]
00752
rans_F_to_s3
[function]
[call site]
00753
RansDecInit
[function]
[call site]
00754
rans_uncompress_O0_32x16_avx2
[function]
[call site]
00755
decode_freq
[function]
[call site]
00756
normalise_freq_shift
[function]
[call site]
00757
rans_F_to_s3
[function]
[call site]
00758
RansDecInit
[function]
[call site]
00759
rans_uncompress_O0_32x16_sse4
[function]
[call site]
00760
decode_freq
[function]
[call site]
00761
rans_F_to_s3
[function]
[call site]
00762
RansDecInit
[function]
[call site]
00763
_mm_i32gather_epi32x
[function]
[call site]
00764
_mm_i32gather_epi32x
[function]
[call site]
00765
_mm_i32gather_epi32x
[function]
[call site]
00766
_mm_i32gather_epi32x
[function]
[call site]
00767
_mm_i32gather_epi32x
[function]
[call site]
00768
_mm_i32gather_epi32x
[function]
[call site]
00769
_mm_i32gather_epi32x
[function]
[call site]
00770
_mm_i32gather_epi32x
[function]
[call site]
00771
rans_uncompress_O0_32x16
[function]
[call site]
00772
decode_freq
[function]
[call site]
00773
normalise_freq_shift
[function]
[call site]
00774
rans_F_to_s3
[function]
[call site]
00775
RansDecRenorm
[function]
[call site]
00776
RansDecRenorm
[function]
[call site]
00777
RansDecRenorm
[function]
[call site]
00778
RansDecRenorm
[function]
[call site]
00779
RansDecRenorm
[function]
[call site]
00780
RansDecRenorm
[function]
[call site]
00781
RansDecRenorm
[function]
[call site]
00782
RansDecRenorm
[function]
[call site]
00783
RansDecRenormSafe
[function]
[call site]
00784
RansDecRenormSafe
[function]
[call site]
00785
RansDecRenormSafe
[function]
[call site]
00786
RansDecRenormSafe
[function]
[call site]
00787
rans_dec_func
[function]
[call site]
00788
hts_rle_decode
[function]
[call site]
00789
var_get_u32
[function]
[call site]
00790
hts_unpack
[function]
[call site]
00791
arith_uncompress_to
[function]
[call site]
00792
var_get_u32
[function]
[call site]
00793
var_get_u32
[function]
[call site]
00794
arith_uncompress_to
[function]
[call site]
00795
unstripe
[function]
[call site]
00796
var_get_u32
[function]
[call site]
00797
hts_unpack_meta
[function]
[call site]
00798
var_get_u32
[function]
[call site]
00799
BZ2_bzBuffToBuffDecompress
[call site]
00800
arith_uncompress_O1_RLE
[function]
[call site]
00801
htscodecs_tls_alloc
[function]
[call site]
00802
SIMPLE_MODEL256_init
[function]
[call site]
00803
htscodecs_tls_alloc
[function]
[call site]
00804
htscodecs_tls_free
[function]
[call site]
00805
SIMPLE_MODEL258_init
[function]
[call site]
00806
RC_SetInput
[function]
[call site]
00807
RC_StartDecode
[function]
[call site]
00808
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00809
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00810
RC_FinishDecode
[function]
[call site]
00811
htscodecs_tls_free
[function]
[call site]
00812
htscodecs_tls_free
[function]
[call site]
00813
arith_uncompress_O0_RLE
[function]
[call site]
00814
SIMPLE_MODEL256_init
[function]
[call site]
00815
htscodecs_tls_alloc
[function]
[call site]
00816
SIMPLE_MODEL258_init
[function]
[call site]
00817
RC_SetInput
[function]
[call site]
00818
RC_StartDecode
[function]
[call site]
00819
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00820
SIMPLE_MODEL258_decodeSymbol
[function]
[call site]
00821
RC_FinishDecode
[function]
[call site]
00822
htscodecs_tls_free
[function]
[call site]
00823
arith_uncompress_O1
[function]
[call site]
00824
htscodecs_tls_alloc
[function]
[call site]
00825
SIMPLE_MODEL256_init
[function]
[call site]
00826
RC_SetInput
[function]
[call site]
00827
RC_StartDecode
[function]
[call site]
00828
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00829
RC_FinishDecode
[function]
[call site]
00830
htscodecs_tls_free
[function]
[call site]
00831
arith_uncompress_O0
[function]
[call site]
00832
SIMPLE_MODEL256_init
[function]
[call site]
00833
RC_SetInput
[function]
[call site]
00834
SIMPLE_MODEL256_decodeSymbol
[function]
[call site]
00835
RC_FinishDecode
[function]
[call site]
00836
hts_unpack
[function]
[call site]
00837
tok3_decode_names
[function]
[call site]
00838
create_context
[function]
[call site]
00839
htscodecs_tls_alloc
[function]
[call site]
00840
uncompressed_size
[function]
[call site]
00841
var_get_u32
[function]
[call site]
00842
var_get_u32
[function]
[call site]
00843
uncompress
[function]
[call site]
00844
var_get_u32
[function]
[call site]
00845
arith_decode
[function]
[call site]
00846
var_get_u32
[function]
[call site]
00847
arith_uncompress_to
[function]
[call site]
00848
rans_decode
[function]
[call site]
00849
var_get_u32
[function]
[call site]
00850
rans_uncompress_to_4x16
[function]
[call site]
00851
decode_name
[function]
[call site]
00852
decode_token_type
[function]
[call site]
00853
decode_token_int
[function]
[call site]
00854
strlen
[call site]
00855
strcpy
[call site]
00856
strlen
[call site]
00857
decode_token_type
[function]
[call site]
00858
decode_token_char
[function]
[call site]
00859
decode_token_alpha
[function]
[call site]
00860
decode_token_int1
[function]
[call site]
00861
decode_token_int
[function]
[call site]
00862
append_uint32_fixed
[function]
[call site]
00863
decode_token_int1
[function]
[call site]
00864
append_uint32_fixed
[function]
[call site]
00865
decode_token_int
[function]
[call site]
00866
append_uint32_var
[function]
[call site]
00867
decode_token_int1
[function]
[call site]
00868
append_uint32_var
[function]
[call site]
00869
append_uint32_var
[function]
[call site]
00870
append_uint32_fixed
[function]
[call site]
00871
realloc
[call site]
00872
free_context
[function]
[call site]
00873
pool_destroy
[function]
[call site]
00874
htscodecs_tls_free
[function]
[call site]
00875
free_context
[function]
[call site]
00876
cram_free_container
[function]
[call site]
00877
cram_free_block
[function]
[call site]
00878
int32_get_blk
[function]
[call site]
00879
cram_free_container
[function]
[call site]
00880
cram_free_block
[function]
[call site]
00881
cram_free_container
[function]
[call site]
00882
cram_free_block
[function]
[call site]
00883
cram_free_block
[function]
[call site]
00884
cram_read_block
[function]
[call site]
00885
cram_free_container
[function]
[call site]
00886
cram_free_block
[function]
[call site]
00887
cram_free_container
[function]
[call site]
00888
hread
[function]
[call site]
00889
cram_free_container
[function]
[call site]
00890
cram_free_container
[function]
[call site]
00891
sam_hdr_init
[function]
[call site]
00892
calloc
[call site]
00893
sam_hdr_add_lines
[function]
[call site]
00894
sam_hdr_fill_hrecs
[function]
[call site]
00895
sam_hrecs_new
[function]
[call site]
00896
calloc
[call site]
00897
kh_init_sam_hrecs_t
[function]
[call site]
00898
calloc
[call site]
00899
kh_init_m_s2i
[function]
[call site]
00900
calloc
[call site]
00901
kh_init_m_s2i
[function]
[call site]
00902
kh_init_m_s2i
[function]
[call site]
00903
pool_create
[function]
[call site]
00904
next_power_2
[function]
[call site]
00905
pool_create
[function]
[call site]
00906
string_pool_create
[function]
[call site]
00907
sam_hrecs_init_type_order
[function]
[call site]
00908
calloc
[call site]
00909
kh_destroy_sam_hrecs_t
[function]
[call site]
00910
pool_destroy
[function]
[call site]
00911
pool_destroy
[function]
[call site]
00912
string_pool_destroy
[function]
[call site]
00913
sam_hrecs_refs_from_targets_array
[function]
[call site]
00914
hts_log
[function]
[call site]
00915
realloc
[call site]
00916
string_dup
[function]
[call site]
00917
string_ndup
[function]
[call site]
00918
string_alloc
[function]
[call site]
00919
new_string_pool
[function]
[call site]
00920
realloc
[call site]
00921
kh_get_s2i
[function]
[call site]
00922
__ac_X31_hash_string
[function]
[call site]
00923
strcmp
[call site]
00924
kh_put_m_s2i
[function]
[call site]
00925
kh_resize_m_s2i
[function]
[call site]
00926
__ac_X31_hash_string
[function]
[call site]
00927
hts_log
[function]
[call site]
00928
__errno_location
[call site]
00929
hts_log
[function]
[call site]
00930
kh_get_m_s2i
[function]
[call site]
00931
kh_del_m_s2i
[function]
[call site]
00932
sam_hrecs_free
[function]
[call site]
00933
kh_destroy_sam_hrecs_t
[function]
[call site]
00934
kh_destroy_m_s2i
[function]
[call site]
00935
kh_destroy_m_s2i
[function]
[call site]
00936
kh_destroy_m_s2i
[function]
[call site]
00937
pool_destroy
[function]
[call site]
00938
pool_destroy
[function]
[call site]
00939
string_pool_destroy
[function]
[call site]
00940
sam_hrecs_parse_lines
[function]
[call site]
00941
strlen
[call site]
00942
sam_hrecs_error
[function]
[call site]
00943
hts_log
[function]
[call site]
00944
sam_hrecs_error
[function]
[call site]
00945
isalpha_c
[function]
[call site]
00946
__ctype_b_loc
[call site]
00947
sam_hrecs_error
[function]
[call site]
00948
TYPEKEY
[function]
[call site]
00949
pool_alloc
[function]
[call site]
00950
new_pool
[function]
[call site]
00951
realloc
[call site]
00952
kh_put_sam_hrecs_t
[function]
[call site]
00953
kh_resize_sam_hrecs_t
[function]
[call site]
00954
sam_hrecs_global_list_add
[function]
[call site]
00955
TYPEKEY
[function]
[call site]
00956
__assert_fail
[call site]
00957
TYPEKEY
[function]
[call site]
00958
sam_hrecs_error
[function]
[call site]
00959
pool_alloc
[function]
[call site]
00960
string_ndup
[function]
[call site]
00961
sam_hrecs_error
[function]
[call site]
00962
sam_hrecs_error
[function]
[call site]
00963
pool_alloc
[function]
[call site]
00964
string_ndup
[function]
[call site]
00965
sam_hrecs_update_hashes
[function]
[call site]
00966
TYPEKEY
[function]
[call site]
00967
__assert_fail
[call site]
00968
strtoll
[call site]
00969
hts_log
[function]
[call site]
00970
kh_get_m_s2i
[function]
[call site]
00971
sam_hrecs_update
[function]
[call site]
00972
sam_hrecs_vupdate
[function]
[call site]
00973
sam_hrecs_find_key
[function]
[call site]
00974
pool_alloc
[function]
[call site]
00975
strlen
[call site]
00976
string_alloc
[function]
[call site]
00977
snprintf
[call site]
00978
sam_hrecs_add_ref_altnames
[function]
[call site]
00979
kstrtok
[function]
[call site]
00980
string_ndup
[function]
[call site]
00981
kh_put_m_s2i
[function]
[call site]
00982
hts_log
[function]
[call site]
00983
strcmp
[call site]
00984
sam_hrecs_add_ref_altnames
[function]
[call site]
00985
strcmp
[call site]
00986
hts_log
[function]
[call site]
00987
realloc
[call site]
00988
kh_put_m_s2i
[function]
[call site]
00989
sam_hrecs_add_ref_altnames
[function]
[call site]
00990
TYPEKEY
[function]
[call site]
00991
sam_hrecs_find_key
[function]
[call site]
00992
hts_log
[function]
[call site]
00993
__assert_fail
[call site]
00994
kh_get_m_s2i
[function]
[call site]
00995
__assert_fail
[call site]
00996
hts_log
[function]
[call site]
00997
realloc
[call site]
00998
kh_put_m_s2i
[function]
[call site]
00999
TYPEKEY
[function]
[call site]
01000
realloc
[call site]
01001
__assert_fail
[call site]
01002
hts_log
[function]
[call site]
01003
kh_get_m_s2i
[function]
[call site]
01004
kh_put_m_s2i
[function]
[call site]
01005
realloc
[call site]
01006
sam_hrecs_free
[function]
[call site]
01007
add_stub_ref_sq_lines
[function]
[call site]
01008
snprintf
[call site]
01009
sam_hrecs_add
[function]
[call site]
01010
sam_hrecs_vadd
[function]
[call site]
01011
TYPEKEY
[function]
[call site]
01012
strncmp
[call site]
01013
sam_hrecs_find_type_id
[function]
[call site]
01014
kh_get_m_s2i
[function]
[call site]
01015
kh_get_m_s2i
[function]
[call site]
01016
kh_get_m_s2i
[function]
[call site]
01017
TYPEKEY
[function]
[call site]
01018
sam_hrecs_vupdate
[function]
[call site]
01019
pool_alloc
[function]
[call site]
01020
kh_put_sam_hrecs_t
[function]
[call site]
01021
__assert_fail
[call site]
01022
sam_hrecs_global_list_add
[function]
[call site]
01023
__assert_fail
[call site]
01024
__assert_fail
[call site]
01025
__assert_fail
[call site]
01026
__assert_fail
[call site]
01027
strncmp
[call site]
01028
pool_alloc
[function]
[call site]
01029
strncmp
[call site]
01030
string_alloc
[function]
[call site]
01031
snprintf
[call site]
01032
strlen
[call site]
01033
string_ndup
[function]
[call site]
01034
strncmp
[call site]
01035
pool_alloc
[function]
[call site]
01036
strncmp
[call site]
01037
string_alloc
[function]
[call site]
01038
snprintf
[call site]
01039
strlen
[call site]
01040
string_ndup
[function]
[call site]
01041
TYPEKEY
[function]
[call site]
01042
sam_hrecs_update_hashes
[function]
[call site]
01043
strncmp
[call site]
01044
hts_log
[function]
[call site]
01045
sam_hrecs_free
[function]
[call site]
01046
rebuild_target_arrays
[function]
[call site]
01047
sam_hdr_update_target_arrays
[function]
[call site]
01048
realloc
[call site]
01049
strcmp
[call site]
01050
strdup
[call site]
01051
kh_get_s2i
[function]
[call site]
01052
kh_del_s2i
[function]
[call site]
01053
kh_init_s2i
[function]
[call site]
01054
kh_put_s2i
[function]
[call site]
01055
kh_resize_s2i
[function]
[call site]
01056
kh_get_s2i
[function]
[call site]
01057
kh_del_s2i
[function]
[call site]
01058
sam_hrecs_parse_lines
[function]
[call site]
01059
rebuild_target_arrays
[function]
[call site]
01060
redact_header_text
[function]
[call site]
01061
__assert_fail
[call site]
01062
sam_hdr_destroy
[function]
[call site]
01063
sam_hrecs_free
[function]
[call site]
01064
cram_free_file_def
[function]
[call site]
01065
calloc
[call site]
01066
strncpy
[call site]
01067
cram_init_tables
[function]
[call site]
01068
strrchr
[call site]
01069
refs_create
[function]
[call site]
01070
calloc
[call site]
01071
string_pool_create
[function]
[call site]
01072
kh_init_refs
[function]
[call site]
01073
pthread_mutex_init
[call site]
01074
refs_free
[function]
[call site]
01075
string_pool_destroy
[function]
[call site]
01076
ref_entry_free_seq
[function]
[call site]
01077
mfclose
[function]
[call site]
01078
mfflush
[function]
[call site]
01079
fwrite
[call site]
01080
fflush
[call site]
01081
fseek
[call site]
01082
fwrite
[call site]
01083
fileno
[call site]
01084
fclose
[call site]
01085
mfdestroy
[function]
[call site]
01086
kh_destroy_refs
[function]
[call site]
01087
bgzf_close
[function]
[call site]
01088
bgzf_flush
[function]
[call site]
01089
mt_queue
[function]
[call site]
01090
pthread_mutex_lock
[call site]
01091
pool_alloc
[function]
[call site]
01092
pthread_mutex_unlock
[call site]
01093
hts_tpool_dispatch3
[function]
[call site]
01094
pthread_mutex_lock
[call site]
01095
pthread_mutex_unlock
[call site]
01096
__errno_location
[call site]
01097
pthread_mutex_unlock
[call site]
01098
wake_next_worker
[function]
[call site]
01099
pthread_mutex_lock
[call site]
01100
__assert_fail
[call site]
01101
pthread_cond_signal
[call site]
01102
pthread_mutex_unlock
[call site]
01103
pthread_mutex_unlock
[call site]
01104
bgzf_encode_level0_func
[function]
[call site]
01105
u16_to_le
[function]
[call site]
01106
u16_to_le
[function]
[call site]
01107
u16_to_le
[function]
[call site]
01108
u32_to_le
[function]
[call site]
01109
u32_to_le
[function]
[call site]
01110
hts_tpool_dispatch3
[function]
[call site]
01111
bgzf_encode_func
[function]
[call site]
01112
bgzf_compress
[function]
[call site]
01113
u16_to_le
[function]
[call site]
01114
u16_to_le
[function]
[call site]
01115
bgzf_zerr
[function]
[call site]
01116
hts_log
[function]
[call site]
01117
deflate
[call site]
01118
bgzf_zerr
[function]
[call site]
01119
hts_log
[function]
[call site]
01120
deflateEnd
[call site]
01121
bgzf_zerr
[function]
[call site]
01122
hts_log
[function]
[call site]
01123
packInt16
[function]
[call site]
01124
crc32
[call site]
01125
packInt32
[function]
[call site]
01126
packInt32
[function]
[call site]
01127
job_cleanup
[function]
[call site]
01128
pthread_mutex_lock
[call site]
01129
pool_free
[function]
[call site]
01130
pthread_mutex_unlock
[call site]
01131
pthread_mutex_lock
[call site]
01132
pthread_mutex_unlock
[call site]
01133
mt_flush_queue
[function]
[call site]
01134
pthread_mutex_lock
[call site]
01135
hts_tpool_process_is_shutdown
[function]
[call site]
01136
pthread_mutex_lock
[call site]
01137
pthread_mutex_unlock
[call site]
01138
pthread_mutex_unlock
[call site]
01139
usleep
[call site]
01140
pthread_mutex_lock
[call site]
01141
pthread_mutex_unlock
[call site]
01142
hts_tpool_process_flush
[function]
[call site]
01143
pthread_mutex_lock
[call site]
01144
pthread_cond_signal
[call site]
01145
pthread_cond_wait
[call site]
01146
gettimeofday
[call site]
01147
pthread_cond_timedwait
[call site]
01148
gettimeofday
[call site]
01149
pthread_cond_timedwait
[call site]
01150
pthread_mutex_unlock
[call site]
01151
pthread_mutex_lock
[call site]
01152
pthread_mutex_unlock
[call site]
01153
bgzf_index_add_block
[function]
[call site]
01154
realloc
[call site]
01155
deflate_block
[function]
[call site]
01156
bgzf_compress
[function]
[call site]
01157
bgzf_gzip_compress
[function]
[call site]
01158
deflate
[call site]
01159
bgzf_zerr
[function]
[call site]
01160
hts_log
[function]
[call site]
01161
hts_log
[function]
[call site]
01162
bgzf_zerr
[function]
[call site]
01163
hts_log
[function]
[call site]
01164
hwrite
[function]
[call site]
01165
hfile_set_blksize
[function]
[call site]
01166
realloc
[call site]
01167
hwrite2
[function]
[call site]
01168
flush_buffer
[function]
[call site]
01169
__errno_location
[call site]
01170
hwrite2
[function]
[call site]
01171
hts_log
[function]
[call site]
01172
bgzf_close_mt
[function]
[call site]
01173
mt_destroy
[function]
[call site]
01174
pthread_mutex_lock
[call site]
01175
pthread_cond_signal
[call site]
01176
hts_tpool_wake_dispatch
[function]
[call site]
01177
pthread_cond_signal
[call site]
01178
pthread_mutex_unlock
[call site]
01179
pthread_mutex_unlock
[call site]
01180
hts_tpool_process_is_shutdown
[function]
[call site]
01181
hts_tpool_process_destroy
[function]
[call site]
01182
pthread_mutex_lock
[call site]
01183
pthread_mutex_unlock
[call site]
01184
hts_tpool_process_reset
[function]
[call site]
01185
pthread_mutex_lock
[call site]
01186
pthread_mutex_unlock
[call site]
01187
hts_tpool_delete_result
[function]
[call site]
01188
hts_tpool_process_flush
[function]
[call site]
01189
pthread_mutex_lock
[call site]
01190
pthread_cond_signal
[call site]
01191
pthread_mutex_unlock
[call site]
01192
hts_tpool_delete_result
[function]
[call site]
01193
hts_tpool_process_detach_locked
[function]
[call site]
01194
hts_tpool_process_shutdown_locked
[function]
[call site]
01195
pthread_cond_broadcast
[call site]
01196
pthread_cond_broadcast
[call site]
01197
pthread_mutex_unlock
[call site]
01198
pthread_cond_destroy
[call site]
01199
pthread_cond_destroy
[call site]
01200
pthread_cond_destroy
[call site]
01201
pthread_mutex_unlock
[call site]
01202
pthread_join
[call site]
01203
pthread_mutex_destroy
[call site]
01204
pthread_mutex_destroy
[call site]
01205
pthread_mutex_destroy
[call site]
01206
pthread_cond_destroy
[call site]
01207
pool_free
[function]
[call site]
01208
hts_tpool_destroy
[function]
[call site]
01209
pthread_mutex_lock
[call site]
01210
pthread_cond_signal
[call site]
01211
pthread_join
[call site]
01212
pthread_mutex_destroy
[call site]
01213
pthread_cond_destroy
[call site]
01214
pool_destroy
[function]
[call site]
01215
fflush
[call site]
01216
deflate_block
[function]
[call site]
01217
bgzf_zerr
[function]
[call site]
01218
hts_log
[function]
[call site]
01219
bgzf_close_mt
[function]
[call site]
01220
hwrite
[function]
[call site]
01221
hflush
[function]
[call site]
01222
flush_buffer
[function]
[call site]
01223
__errno_location
[call site]
01224
hts_log
[function]
[call site]
01225
bgzf_close_mt
[function]
[call site]
01226
inflateEnd
[call site]
01227
deflateEnd
[call site]
01228
bgzf_zerr
[function]
[call site]
01229
hts_log
[function]
[call site]
01230
hclose
[function]
[call site]
01231
writebuffer_is_nonempty
[function]
[call site]
01232
__errno_location
[call site]
01233
hfile_destroy
[function]
[call site]
01234
__errno_location
[call site]
01235
bgzf_index_destroy
[function]
[call site]
01236
free_cache
[function]
[call site]
01237
kh_destroy_cache
[function]
[call site]
01238
pthread_mutex_destroy
[call site]
01239
cram_new_metrics
[function]
[call site]
01240
calloc
[call site]
01241
kh_init_m_metrics
[function]
[call site]
01242
calloc
[call site]
01243
refs_from_header
[function]
[call site]
01244
sam_hdr_fill_hrecs
[function]
[call site]
01245
realloc
[call site]
01246
kh_get_refs
[function]
[call site]
01247
__ac_X31_hash_string
[function]
[call site]
01248
calloc
[call site]
01249
string_dup
[function]
[call site]
01250
sam_hrecs_find_type_id
[function]
[call site]
01251
sam_hrecs_find_key
[function]
[call site]
01252
string_dup
[function]
[call site]
01253
kh_put_refs
[function]
[call site]
01254
kh_resize_refs
[function]
[call site]
01255
cram_set_option
[function]
[call site]
01256
cram_set_voption
[function]
[call site]
01257
__errno_location
[call site]
01258
strdup
[call site]
01259
refs_free
[function]
[call site]
01260
cram_seek_to_refpos
[function]
[call site]
01261
cram_index_query
[function]
[call site]
01262
cram_seek
[function]
[call site]
01263
cram_drain_rqueue
[function]
[call site]
01264
hts_tpool_process_empty
[function]
[call site]
01265
pthread_mutex_lock
[call site]
01266
hts_tpool_next_result_wait
[function]
[call site]
01267
hts_tpool_next_result_locked
[function]
[call site]
01268
pthread_cond_signal
[call site]
01269
wake_next_worker
[function]
[call site]
01270
pthread_mutex_unlock
[call site]
01271
hts_tpool_process_destroy
[function]
[call site]
01272
pthread_cond_timedwait
[call site]
01273
pthread_mutex_unlock
[call site]
01274
hts_tpool_result_data
[function]
[call site]
01275
cram_free_container
[function]
[call site]
01276
cram_free_slice
[function]
[call site]
01277
hts_tpool_delete_result
[function]
[call site]
01278
cram_free_container
[function]
[call site]
01279
cram_free_slice
[function]
[call site]
01280
cram_free_container
[function]
[call site]
01281
hseek
[function]
[call site]
01282
hread
[function]
[call site]
01283
cram_seek
[function]
[call site]
01284
pthread_mutex_lock
[call site]
01285
pthread_mutex_unlock
[call site]
01286
cram_free_container
[function]
[call site]
01287
cram_free_container
[function]
[call site]
01288
pthread_mutex_unlock
[call site]
01289
pthread_mutex_lock
[call site]
01290
pthread_mutex_unlock
[call site]
01291
pthread_mutex_lock
[call site]
01292
pthread_mutex_unlock
[call site]
01293
cram_load_reference
[function]
[call site]
01294
refs_load_fai
[function]
[call site]
01295
strlen
[call site]
01296
refs_create
[function]
[call site]
01297
bgzf_close
[function]
[call site]
01298
strstr
[call site]
01299
string_ndup
[function]
[call site]
01300
snprintf
[call site]
01301
strcmp
[call site]
01302
string_ndup
[function]
[call site]
01303
snprintf
[call site]
01304
string_dup
[function]
[call site]
01305
sprintf
[call site]
01306
bgzf_open_ref
[function]
[call site]
01307
hisremote
[function]
[call site]
01308
find_scheme_handler
[function]
[call site]
01309
snprintf
[call site]
01310
access
[call site]
01311
fai_build
[function]
[call site]
01312
fai_build3
[function]
[call site]
01313
fai_build3_core
[function]
[call site]
01314
bgzf_open
[function]
[call site]
01315
strchr
[call site]
01316
hopen
[function]
[call site]
01317
bgzf_read_init
[function]
[call site]
01318
hclose_abruptly
[function]
[call site]
01319
__errno_location
[call site]
01320
hfile_destroy
[function]
[call site]
01321
__errno_location
[call site]
01322
hopen
[function]
[call site]
01323
bgzf_write_init
[function]
[call site]
01324
__errno_location
[call site]
01325
ed_is_big
[function]
[call site]
01326
hts_log
[function]
[call site]
01327
bgzf_index_build_init
[function]
[call site]
01328
bgzf_index_destroy
[function]
[call site]
01329
calloc
[call site]
01330
hts_log
[function]
[call site]
01331
fai_build_core
[function]
[call site]
01332
calloc
[call site]
01333
kh_init_s
[function]
[call site]
01334
calloc
[call site]
01335
bgzf_getc
[function]
[call site]
01336
bgzf_read_block
[function]
[call site]
01337
hts_tpool_next_result_wait
[function]
[call site]
01338
hts_tpool_result_data
[function]
[call site]
01339
mt_destroy
[function]
[call site]
01340
hts_tpool_delete_result
[function]
[call site]
01341
hts_tpool_delete_result
[function]
[call site]
01342
hts_log
[function]
[call site]
01343
hts_tpool_delete_result
[function]
[call site]
01344
bgzf_index_add_block
[function]
[call site]
01345
pthread_mutex_lock
[call site]
01346
pool_free
[function]
[call site]
01347
pthread_mutex_unlock
[call site]
01348
hts_tpool_delete_result
[function]
[call site]
01349
bgzf_htell
[function]
[call site]
01350
pthread_mutex_lock
[call site]
01351
htell
[function]
[call site]
01352
hread
[function]
[call site]
01353
__errno_location
[call site]
01354
hts_log
[function]
[call site]
01355
inflate_gzip_block
[function]
[call site]
01356
hread
[function]
[call site]
01357
inflate
[call site]
01358
bgzf_zerr
[function]
[call site]
01359
hts_log
[function]
[call site]
01360
hpeek
[function]
[call site]
01361
inflateReset
[call site]
01362
bgzf_zerr
[function]
[call site]
01363
hts_log
[function]
[call site]
01364
hts_log
[function]
[call site]
01365
hts_log
[function]
[call site]
01366
load_block_from_cache
[function]
[call site]
01367
kh_get_cache
[function]
[call site]
01368
hseek
[function]
[call site]
01369
hts_log
[function]
[call site]
01370
exit
[call site]
01371
hread
[function]
[call site]
01372
hts_log
[function]
[call site]
01373
check_header
[function]
[call site]
01374
unpackInt16
[function]
[call site]
01375
unpackInt16
[function]
[call site]
01376
hts_log
[function]
[call site]
01377
hread
[function]
[call site]
01378
calloc
[call site]
01379
inflateInit2_
[call site]
01380
bgzf_zerr
[function]
[call site]
01381
hts_log
[function]
[call site]
01382
inflate_gzip_block
[function]
[call site]
01383
hts_log
[function]
[call site]
01384
unpackInt16
[function]
[call site]
01385
hts_log
[function]
[call site]
01386
hread
[function]
[call site]
01387
hts_log
[function]
[call site]
01388
inflate_block
[function]
[call site]
01389
le_to_u32
[function]
[call site]
01390
bgzf_uncompress
[function]
[call site]
01391
inflateInit2_
[call site]
01392
bgzf_zerr
[function]
[call site]
01393
hts_log
[function]
[call site]
01394
inflate
[call site]
01395
bgzf_zerr
[function]
[call site]
01396
hts_log
[function]
[call site]
01397
inflateEnd
[call site]
01398
bgzf_zerr
[function]
[call site]
01399
hts_log
[function]
[call site]
01400
bgzf_zerr
[function]
[call site]
01401
hts_log
[function]
[call site]
01402
crc32
[call site]
01403
hts_log
[function]
[call site]
01404
bgzf_zerr
[function]
[call site]
01405
hts_log
[function]
[call site]
01406
bgzf_htell
[function]
[call site]
01407
bgzf_index_add_block
[function]
[call site]
01408
cache_block
[function]
[call site]
01409
kh_del_cache
[function]
[call site]
01410
kh_put_cache
[function]
[call site]
01411
kh_resize_cache
[function]
[call site]
01412
bgzf_htell
[function]
[call site]
01413
hts_log
[function]
[call site]
01414
hts_log
[function]
[call site]
01415
bgzf_getc
[function]
[call site]
01416
hts_log
[function]
[call site]
01417
__ctype_b_loc
[call site]
01418
fai_insert_index
[function]
[call site]
01419
hts_log
[function]
[call site]
01420
strdup
[call site]
01421
kh_put_s
[function]
[call site]
01422
kh_resize_s
[function]
[call site]
01423
__ac_X31_hash_string
[function]
[call site]
01424
hts_log
[function]
[call site]
01425
realloc
[call site]
01426
hts_log
[function]
[call site]
01427
__ctype_b_loc
[call site]
01428
kputc
[function]
[call site]
01429
bgzf_getc
[function]
[call site]
01430
kputsn
[function]
[call site]
01431
hts_log
[function]
[call site]
01432
bgzf_getc
[function]
[call site]
01433
bgzf_utell
[function]
[call site]
01434
bgzf_getc
[function]
[call site]
01435
bgzf_utell
[function]
[call site]
01436
hts_log
[function]
[call site]
01437
__ctype_b_loc
[call site]
01438
bgzf_getc
[function]
[call site]
01439
hts_log
[function]
[call site]
01440
bgzf_getc
[function]
[call site]
01441
bgzf_utell
[function]
[call site]
01442
hts_log
[function]
[call site]
01443
hts_log
[function]
[call site]
01444
__ctype_b_loc
[call site]
01445
bgzf_getc
[function]
[call site]
01446
hts_log
[function]
[call site]
01447
hts_log
[function]
[call site]
01448
hts_log
[function]
[call site]
01449
fai_insert_index
[function]
[call site]
01450
fai_destroy
[function]
[call site]
01451
kh_destroy_s
[function]
[call site]
01452
bgzf_close
[function]
[call site]
01453
hts_log
[function]
[call site]
01454
ksprintf
[function]
[call site]
01455
ksprintf
[function]
[call site]
01456
bgzf_index_dump
[function]
[call site]
01457
hts_log
[function]
[call site]
01458
__errno_location
[call site]
01459
get_name_suffix
[function]
[call site]
01460
strlen
[call site]
01461
snprintf
[call site]
01462
hopen
[function]
[call site]
01463
bgzf_index_dump_hfile
[function]
[call site]
01464
hts_log
[function]
[call site]
01465
__errno_location
[call site]
01466
bgzf_flush
[function]
[call site]
01467
hwrite_uint64
[function]
[call site]
01468
ed_is_big
[function]
[call site]
01469
hwrite
[function]
[call site]
01470
hwrite_uint64
[function]
[call site]
01471
hwrite_uint64
[function]
[call site]
01472
__errno_location
[call site]
01473
hts_log
[function]
[call site]
01474
hclose
[function]
[call site]
01475
__errno_location
[call site]
01476
hts_log
[function]
[call site]
01477
hclose_abruptly
[function]
[call site]
01478
hts_log
[function]
[call site]
01479
bgzf_close
[function]
[call site]
01480
__errno_location
[call site]
01481
hts_log
[function]
[call site]
01482
hopen
[function]
[call site]
01483
__errno_location
[call site]
01484
hts_log
[function]
[call site]
01485
fai_save
[function]
[call site]
01486
kh_get_s
[function]
[call site]
01487
__assert_fail
[call site]
01488
snprintf
[call site]
01489
snprintf
[call site]
01490
hputs
[function]
[call site]
01491
strlen
[call site]
01492
hputs2
[function]
[call site]
01493
hwrite2
[function]
[call site]
01494
hputs
[function]
[call site]
01495
__errno_location
[call site]
01496
hts_log
[function]
[call site]
01497
hclose
[function]
[call site]
01498
__errno_location
[call site]
01499
hts_log
[function]
[call site]
01500
fai_destroy
[function]
[call site]
01501
__errno_location
[call site]
01502
bgzf_close
[function]
[call site]
01503
fai_destroy
[function]
[call site]
01504
__errno_location
[call site]
01505
bgzf_open
[function]
[call site]
01506
perror
[call site]
01507
bgzf_index_load
[function]
[call site]
01508
get_name_suffix
[function]
[call site]
01509
hopen
[function]
[call site]
01510
bgzf_index_load_hfile
[function]
[call site]
01511
calloc
[call site]
01512
hread_uint64
[function]
[call site]
01513
hread
[function]
[call site]
01514
ed_is_big
[function]
[call site]
01515
hread_uint64
[function]
[call site]
01516
hread_uint64
[function]
[call site]
01517
__errno_location
[call site]
01518
hts_log
[function]
[call site]
01519
hclose
[function]
[call site]
01520
__errno_location
[call site]
01521
hts_log
[function]
[call site]
01522
hclose_abruptly
[function]
[call site]
01523
hts_log
[function]
[call site]
01524
bgzf_close
[function]
[call site]
01525
hts_log
[function]
[call site]
01526
hopen
[function]
[call site]
01527
hts_log
[function]
[call site]
01528
perror
[call site]
01529
hgets
[function]
[call site]
01530
__errno_location
[call site]
01531
hgetln
[function]
[call site]
01532
hgetdelim
[function]
[call site]
01533
writebuffer_is_nonempty
[function]
[call site]
01534
__errno_location
[call site]
01535
memchr
[call site]
01536
refill_buffer
[function]
[call site]
01537
isspace_c
[function]
[call site]
01538
string_dup
[function]
[call site]
01539
isspace_c
[function]
[call site]
01540
strtoll
[call site]
01541
isspace_c
[function]
[call site]
01542
strtoll
[call site]
01543
isspace_c
[function]
[call site]
01544
strtol
[call site]
01545
isspace_c
[function]
[call site]
01546
strtol
[call site]
01547
kh_put_refs
[function]
[call site]
01548
realloc
[call site]
01549
hclose
[function]
[call site]
01550
hclose_abruptly
[function]
[call site]
01551
refs_free
[function]
[call site]
01552
sanitise_SQ_lines
[function]
[call site]
01553
kh_get_refs
[function]
[call site]
01554
strcmp
[call site]
01555
hts_log
[function]
[call site]
01556
refs_create
[function]
[call site]
01557
refs_from_header
[function]
[call site]
01558
refs2id
[function]
[call site]
01559
calloc
[call site]
01560
kh_get_refs
[function]
[call site]
01561
hts_log
[function]
[call site]
01562
__isoc99_sscanf
[call site]
01563
hts_log
[function]
[call site]
01564
hts_log
[function]
[call site]
01565
__errno_location
[call site]
01566
hts_log
[function]
[call site]
01567
cram_init_tables
[function]
[call site]
01568
hts_tpool_init
[function]
[call site]
01569
pthread_mutexattr_init
[call site]
01570
pthread_mutexattr_settype
[call site]
01571
pthread_mutex_init
[call site]
01572
pthread_mutexattr_destroy
[call site]
01573
pthread_mutex_lock
[call site]
01574
pthread_attr_init
[call site]
01575
pthread_attr_getstacksize
[call site]
01576
pthread_attr_setstacksize
[call site]
01577
pthread_create
[call site]
01578
tpool_worker
[function]
[call site]
01579
pthread_mutex_lock
[call site]
01580
pthread_cond_wait
[call site]
01581
pthread_cond_broadcast
[call site]
01582
hts_tpool_add_result
[function]
[call site]
01583
pthread_mutex_lock
[call site]
01584
pthread_cond_signal
[call site]
01585
pthread_mutex_unlock
[call site]
01586
hts_tpool_process_shutdown
[function]
[call site]
01587
pthread_mutex_lock
[call site]
01588
hts_tpool_process_shutdown_locked
[function]
[call site]
01589
pthread_cond_broadcast
[call site]
01590
pthread_mutex_lock
[call site]
01591
hts_tpool_process_destroy
[function]
[call site]
01592
pthread_mutex_unlock
[call site]
01593
hts_tpool_process_shutdown_locked
[function]
[call site]
01594
pthread_mutex_unlock
[call site]
01595
pthread_mutex_unlock
[call site]
01596
pthread_attr_destroy
[call site]
01597
__errno_location
[call site]
01598
__errno_location
[call site]
01599
hts_log
[function]
[call site]
01600
pthread_mutex_unlock
[call site]
01601
pthread_join
[call site]
01602
pthread_cond_destroy
[call site]
01603
pthread_mutex_destroy
[call site]
01604
pthread_attr_destroy
[call site]
01605
__errno_location
[call site]
01606
hts_tpool_process_init
[function]
[call site]
01607
pthread_cond_init
[call site]
01608
pthread_cond_init
[call site]
01609
pthread_cond_init
[call site]
01610
hts_tpool_process_attach
[function]
[call site]
01611
__assert_fail
[call site]
01612
pthread_mutex_init
[call site]
01613
pthread_mutex_init
[call site]
01614
pthread_mutex_init
[call site]
01615
pthread_mutex_init
[call site]
01616
hts_tpool_size
[function]
[call site]
01617
hts_tpool_process_init
[function]
[call site]
01618
pthread_mutex_init
[call site]
01619
pthread_mutex_init
[call site]
01620
pthread_mutex_init
[call site]
01621
pthread_mutex_init
[call site]
01622
hts_log
[function]
[call site]
01623
__errno_location
[call site]
01624
bgzf_hopen
[function]
[call site]
01625
__errno_location
[call site]
01626
hts_process_opts
[function]
[call site]
01627
hts_parse_opt_list
[function]
[call site]
01628
strncpy
[call site]
01629
hts_opt_add
[function]
[call site]
01630
strdup
[call site]
01631
strchr
[call site]
01632
strcmp
[call site]
01633
atoi
[call site]
01634
strcmp
[call site]
01635
atoi
[call site]
01636
strcmp
[call site]
01637
strcmp
[call site]
01638
strcmp
[call site]
01639
atoi
[call site]
01640
strcmp
[call site]
01641
atoi
[call site]
01642
strcmp
[call site]
01643
strcmp
[call site]
01644
atoi
[call site]
01645
strcmp
[call site]
01646
strcmp
[call site]
01647
atoi
[call site]
01648
strcmp
[call site]
01649
strcmp
[call site]
01650
atoi
[call site]
01651
strcmp
[call site]
01652
strcmp
[call site]
01653
atoi
[call site]
01654
strcmp
[call site]
01655
strcmp
[call site]
01656
atoi
[call site]
01657
strcmp
[call site]
01658
strcmp
[call site]
01659
atoi
[call site]
01660
strcmp
[call site]
01661
strcmp
[call site]
01662
strcmp
[call site]
01663
strcmp
[call site]
01664
atoi
[call site]
01665
strcmp
[call site]
01666
atoi
[call site]
01667
strcmp
[call site]
01668
strcmp
[call site]
01669
atoi
[call site]
01670
strcmp
[call site]
01671
strcmp
[call site]
01672
strcmp
[call site]
01673
strcmp
[call site]
01674
strcmp
[call site]
01675
strcmp
[call site]
01676
strcmp
[call site]
01677
strcmp
[call site]
01678
strcmp
[call site]
01679
strcmp
[call site]
01680
strcmp
[call site]
01681
strcmp
[call site]
01682
strcmp
[call site]
01683
strcmp
[call site]
01684
strcmp
[call site]
01685
strcmp
[call site]
01686
hts_log
[function]
[call site]
01687
strcmp
[call site]
01688
strcmp
[call site]
01689
strtol
[call site]
01690
strcmp
[call site]
01691
strtol
[call site]
01692
strcmp
[call site]
01693
strcmp
[call site]
01694
atoi
[call site]
01695
strcmp
[call site]
01696
strcmp
[call site]
01697
strcmp
[call site]
01698
strcmp
[call site]
01699
strcmp
[call site]
01700
strtol
[call site]
01701
strcmp
[call site]
01702
strcmp
[call site]
01703
strcmp
[call site]
01704
strcmp
[call site]
01705
strcmp
[call site]
01706
strcmp
[call site]
01707
strcmp
[call site]
01708
strcmp
[call site]
01709
strcmp
[call site]
01710
strcmp
[call site]
01711
hts_log
[function]
[call site]
01712
hts_opt_apply
[function]
[call site]
01713
hts_set_opt
[function]
[call site]
01714
hts_set_threads
[function]
[call site]
01715
sam_set_threads
[function]
[call site]
01716
hts_tpool_init
[function]
[call site]
01717
sam_set_thread_pool
[function]
[call site]
01718
sam_state_create
[function]
[call site]
01719
calloc
[call site]
01720
pthread_mutex_init
[call site]
01721
pthread_mutex_init
[call site]
01722
pthread_cond_init
[call site]
01723
hts_tpool_size
[function]
[call site]
01724
hts_tpool_process_init
[function]
[call site]
01725
sam_state_destroy
[function]
[call site]
01726
pthread_mutex_lock
[call site]
01727
pthread_cond_signal
[call site]
01728
hts_tpool_wake_dispatch
[function]
[call site]
01729
hts_tpool_wake_dispatch
[function]
[call site]
01730
pthread_mutex_unlock
[call site]
01731
usleep
[call site]
01732
pthread_mutex_lock
[call site]
01733
pthread_mutex_unlock
[call site]
01734
hts_tpool_dispatch
[function]
[call site]
01735
hts_tpool_dispatch3
[function]
[call site]
01736
sam_format_worker
[function]
[call site]
01737
pthread_mutex_lock
[call site]
01738
pthread_mutex_unlock
[call site]
01739
calloc
[call site]
01740
sam_state_err
[function]
[call site]
01741
pthread_mutex_lock
[call site]
01742
pthread_mutex_unlock
[call site]
01743
sam_format1_append
[function]
[call site]
01744
kputsn_
[function]
[call site]
01745
ks_resize
[function]
[call site]
01746
kputc_
[function]
[call site]
01747
ks_resize
[function]
[call site]
01748
kputw
[function]
[call site]
01749
ks_resize
[function]
[call site]
01750
kputuw
[function]
[call site]
01751
ks_resize
[function]
[call site]
01752
ks_resize
[function]
[call site]
01753
kputs
[function]
[call site]
01754
kputc_
[function]
[call site]
01755
kputsn_
[function]
[call site]
01756
kputll
[function]
[call site]
01757
ks_resize
[function]
[call site]
01758
kputw
[function]
[call site]
01759
kputw
[function]
[call site]
01760
kputc_
[function]
[call site]
01761
kputc_
[function]
[call site]
01762
kputc_
[function]
[call site]
01763
kputsn_
[function]
[call site]
01764
kputsn_
[function]
[call site]
01765
kputs
[function]
[call site]
01766
kputc_
[function]
[call site]
01767
kputll
[function]
[call site]
01768
kputll
[function]
[call site]
01769
ks_resize
[function]
[call site]
01770
nibble2base
[function]
[call site]
01771
kputsn_
[function]
[call site]
01772
kputc_
[function]
[call site]
01773
sam_format_aux1
[function]
[call site]
01774
kputsn_
[function]
[call site]
01775
kputc_
[function]
[call site]
01776
kputsn_
[function]
[call site]
01777
kputw
[function]
[call site]
01778
kputsn_
[function]
[call site]
01779
kputw
[function]
[call site]
01780
kputsn_
[function]
[call site]
01781
le_to_u16
[function]
[call site]
01782
kputuw
[function]
[call site]
01783
kputsn_
[function]
[call site]
01784
le_to_i16
[function]
[call site]
01785
le_to_u16
[function]
[call site]
01786
kputw
[function]
[call site]
01787
kputsn_
[function]
[call site]
01788
le_to_u32
[function]
[call site]
01789
kputuw
[function]
[call site]
01790
kputsn_
[function]
[call site]
01791
le_to_i32
[function]
[call site]
01792
le_to_u32
[function]
[call site]
01793
kputw
[function]
[call site]
01794
kputsn_
[function]
[call site]
01795
kputc_
[function]
[call site]
01796
le_to_float
[function]
[call site]
01797
le_to_u32
[function]
[call site]
01798
ksprintf
[function]
[call site]
01799
le_to_double
[function]
[call site]
01800
le_to_u64
[function]
[call site]
01801
ksprintf
[function]
[call site]
01802
kputc_
[function]
[call site]
01803
kputc_
[function]
[call site]
01804
kputc_
[function]
[call site]
01805
le_to_u32
[function]
[call site]
01806
kputsn_
[function]
[call site]
01807
kputc
[function]
[call site]
01808
ks_expand
[function]
[call site]
01809
kputw
[function]
[call site]
01810
ks_expand
[function]
[call site]
01811
kputuw
[function]
[call site]
01812
ks_expand
[function]
[call site]
01813
le_to_i16
[function]
[call site]
01814
kputw
[function]
[call site]
01815
ks_expand
[function]
[call site]
01816
le_to_u16
[function]
[call site]
01817
kputuw
[function]
[call site]
01818
ks_expand
[function]
[call site]
01819
le_to_i32
[function]
[call site]
01820
kputw
[function]
[call site]
01821
ks_expand
[function]
[call site]
01822
le_to_u32
[function]
[call site]
01823
kputuw
[function]
[call site]
01824
ks_expand
[function]
[call site]
01825
le_to_float
[function]
[call site]
01826
kputd
[function]
[call site]
01827
__errno_location
[call site]
01828
hts_log
[function]
[call site]
01829
__errno_location
[call site]
01830
kputsn
[function]
[call site]
01831
hts_log
[function]
[call site]
01832
__errno_location
[call site]
01833
hts_log
[function]
[call site]
01834
__errno_location
[call site]
01835
__errno_location
[call site]
01836
sam_state_err
[function]
[call site]
01837
kputc
[function]
[call site]
01838
pthread_mutex_lock
[call site]
01839
pthread_mutex_unlock
[call site]
01840
hts_tpool_process_flush
[function]
[call site]
01841
pthread_mutex_lock
[call site]
01842
pthread_mutex_unlock
[call site]
01843
hts_tpool_process_empty
[function]
[call site]
01844
usleep
[call site]
01845
pthread_mutex_lock
[call site]
01846
hts_tpool_process_is_shutdown
[function]
[call site]
01847
pthread_mutex_unlock
[call site]
01848
hts_tpool_process_shutdown
[function]
[call site]
01849
pthread_join
[call site]
01850
hts_tpool_process_destroy
[function]
[call site]
01851
hts_tpool_destroy
[function]
[call site]
01852
pthread_mutex_destroy
[call site]
01853
pthread_mutex_destroy
[call site]
01854
pthread_cond_destroy
[call site]
01855
sam_free_sp_bams
[function]
[call site]
01856
sam_free_sp_bams
[function]
[call site]
01857
bam_hdr_destroy
[function]
[call site]
01858
sam_hdr_destroy
[function]
[call site]
01859
bgzf_thread_pool
[function]
[call site]
01860
calloc
[call site]
01861
hts_tpool_size
[function]
[call site]
01862
hts_tpool_process_init
[function]
[call site]
01863
hts_tpool_process_ref_incr
[function]
[call site]
01864
pthread_mutex_unlock
[call site]
01865
pool_create
[function]
[call site]
01866
pthread_mutex_init
[call site]
01867
pthread_mutex_init
[call site]
01868
pthread_mutex_init
[call site]
01869
pthread_cond_init
[call site]
01870
pthread_create
[call site]
01871
hts_get_bgzfp
[function]
[call site]
01872
bgzf_mt
[function]
[call site]
01873
hts_tpool_init
[function]
[call site]
01874
bgzf_thread_pool
[function]
[call site]
01875
hts_tpool_destroy
[function]
[call site]
01876
hts_set_opt
[function]
[call site]
01877
hts_hfile
[function]
[call site]
01878
bgzf_hfile
[function]
[call site]
01879
cram_hfile
[function]
[call site]
01880
bgzf_hfile
[function]
[call site]
01881
hfile_set_blksize
[function]
[call site]
01882
hts_log
[function]
[call site]
01883
hts_log
[function]
[call site]
01884
hts_set_thread_pool
[function]
[call site]
01885
sam_set_thread_pool
[function]
[call site]
01886
hts_get_bgzfp
[function]
[call site]
01887
bgzf_thread_pool
[function]
[call site]
01888
hts_set_opt
[function]
[call site]
01889
hts_set_cache_size
[function]
[call site]
01890
hts_get_bgzfp
[function]
[call site]
01891
bgzf_set_cache_size
[function]
[call site]
01892
fastq_state_set
[function]
[call site]
01893
fastq_state_init
[function]
[call site]
01894
calloc
[call site]
01895
strcpy
[call site]
01896
strcmp
[call site]
01897
kh_init_tag
[function]
[call site]
01898
calloc
[call site]
01899
strlen
[call site]
01900
hts_log
[function]
[call site]
01901
kh_put_tag
[function]
[call site]
01902
kh_resize_tag
[function]
[call site]
01903
strncpy
[call site]
01904
fastq_state_set
[function]
[call site]
01905
fastq_state_set
[function]
[call site]
01906
cram_set_option
[function]
[call site]
01907
hts_set_filter_expression
[function]
[call site]
01908
hts_filter_free
[function]
[call site]
01909
regfree
[call site]
01910
hts_filter_init
[function]
[call site]
01911
cram_set_voption
[function]
[call site]
01915
hts_set_opt
[function]
[call site]
01916
hts_opt_free
[function]
[call site]
01917
hts_opt_free
[function]
[call site]
01918
hclose_abruptly
[function]
[call site]
01919
hts_log
[function]
[call site]
01920
hclose_abruptly
[function]
[call site]
01921
hclose
[function]
[call site]
01922
abort
[call site]
01923
view_sam
[function]
[call site]
01924
hts_open
[function]
[call site]
01925
hts_open_format
[function]
[call site]
01926
strncpy
[call site]
01927
strchr
[call site]
01928
strchr
[call site]
01929
strdup
[call site]
01930
hopen
[function]
[call site]
01931
hts_hopen
[function]
[call site]
01932
hts_opt_apply
[function]
[call site]
01933
__errno_location
[call site]
01934
hts_log
[function]
[call site]
01935
hclose_abruptly
[function]
[call site]
01936
abort
[call site]
01937
sam_hdr_read
[function]
[call site]
01938
__errno_location
[call site]
01939
bam_hdr_read
[function]
[call site]
01940
bgzf_check_EOF
[function]
[call site]
01941
pthread_mutex_lock
[call site]
01942
pthread_cond_signal
[call site]
01943
hts_tpool_wake_dispatch
[function]
[call site]
01944
pthread_mutex_unlock
[call site]
01945
pthread_cond_wait
[call site]
01946
pthread_cond_signal
[call site]
01947
abort
[call site]
01948
pthread_mutex_unlock
[call site]
01949
bgzf_check_EOF_common
[function]
[call site]
01950
htell
[function]
[call site]
01951
hseek
[function]
[call site]
01952
hclearerr
[function]
[call site]
01953
__errno_location
[call site]
01954
hclearerr
[function]
[call site]
01955
hread
[function]
[call site]
01956
hseek
[function]
[call site]
01957
memcmp
[call site]
01958
hts_log
[function]
[call site]
01959
bgzf_read
[function]
[call site]
01960
bgzf_read_block
[function]
[call site]
01961
hts_log
[function]
[call site]
01962
bgzf_htell
[function]
[call site]
01963
hts_log
[function]
[call site]
01964
bgzf_htell
[function]
[call site]
01965
memcmp
[call site]
01966
hts_log
[function]
[call site]
01967
sam_hdr_init
[function]
[call site]
01968
bgzf_read
[function]
[call site]
01969
le_to_u32
[function]
[call site]
01970
bgzf_read
[function]
[call site]
01971
ed_swap_4p
[function]
[call site]
01972
ed_swap_4
[function]
[call site]
01973
calloc
[call site]
01974
calloc
[call site]
01975
bgzf_read
[function]
[call site]
01976
ed_swap_4p
[function]
[call site]
01977
bgzf_read
[function]
[call site]
01978
realloc
[call site]
01979
bgzf_read
[function]
[call site]
01980
ed_swap_4p
[function]
[call site]
01981
hts_log
[function]
[call site]
01982
hts_log
[function]
[call site]
01983
hts_log
[function]
[call site]
01984
hts_log
[function]
[call site]
01985
sam_hdr_destroy
[function]
[call site]
01986
sam_hdr_dup
[function]
[call site]
01987
sam_hdr_init
[function]
[call site]
01988
sam_hdr_dup_sdict
[function]
[call site]
01989
kh_init_s2i
[function]
[call site]
01990
kh_get_s2i
[function]
[call site]
01991
kh_put_s2i
[function]
[call site]
01992
sam_hrecs_rebuild_text
[function]
[call site]
01993
kputsn
[function]
[call site]
01994
sam_hrecs_rebuild_lines
[function]
[call site]
01995
kputsn
[function]
[call site]
01996
build_header_line
[function]
[call site]
01997
kputc_
[function]
[call site]
01998
kputsn
[function]
[call site]
01999
kputc_
[function]
[call site]
02000
kputsn
[function]
[call site]
02001
kputc
[function]
[call site]
02002
ks_release
[function]
[call site]
02003
ks_release
[function]
[call site]
02004
sam_hdr_update_target_arrays
[function]
[call site]
02005
sam_hdr_destroy
[function]
[call site]
02006
sam_hdr_create
[function]
[call site]
02007
sam_hdr_init
[function]
[call site]
02008
kh_init_s2i
[function]
[call site]
02009
hts_getline
[function]
[call site]
02010
hts_log
[function]
[call site]
02011
kgetline2
[function]
[call site]
02012
ks_resize
[function]
[call site]
02013
hgetln
[function]
[call site]
02014
herrno
[function]
[call site]
02015
__errno_location
[call site]
02016
bgzf_getline
[function]
[call site]
02017
bgzf_read_block
[function]
[call site]
02018
ks_expand
[function]
[call site]
02019
bgzf_htell
[function]
[call site]
02020
abort
[call site]
02021
strncmp
[call site]
02022
strncmp
[call site]
02023
hts_log
[function]
[call site]
02024
calloc
[call site]
02025
strncpy
[call site]
02026
strncmp
[call site]
02027
kh_put_s2i
[function]
[call site]
02028
hts_log
[function]
[call site]
02029
kh_init_s2i
[function]
[call site]
02030
kh_put_s2i
[function]
[call site]
02031
hts_log
[function]
[call site]
02032
warn_if_known_stderr
[function]
[call site]
02033
strstr
[call site]
02034
known_stderr
[function]
[call site]
02035
hts_log
[function]
[call site]
02036
hts_log
[function]
[call site]
02037
strstr
[call site]
02038
known_stderr
[function]
[call site]
02039
strstr
[call site]
02040
known_stderr
[function]
[call site]
02041
hts_log
[function]
[call site]
02042
warn_if_known_stderr
[function]
[call site]
02043
valid_sam_header_type
[function]
[call site]
02044
hts_log
[function]
[call site]
02045
warn_if_known_stderr
[function]
[call site]
02046
kputsn
[function]
[call site]
02047
kputc
[function]
[call site]
02048
bgzf_peek
[function]
[call site]
02049
bgzf_read_block
[function]
[call site]
02050
hts_log
[function]
[call site]
02051
hpeek
[function]
[call site]
02052
strstr
[call site]
02053
hopen
[function]
[call site]
02054
kgetline
[function]
[call site]
02055
ks_resize
[function]
[call site]
02056
strlen
[call site]
02057
hgets
[function]
[call site]
02058
strchr
[call site]
02059
calloc
[call site]
02060
kh_put_s2i
[function]
[call site]
02061
strtoll
[call site]
02062
hts_log
[function]
[call site]
02063
kh_init_s2i
[function]
[call site]
02064
kh_put_s2i
[function]
[call site]
02065
kputs
[function]
[call site]
02066
kputsn
[function]
[call site]
02067
kputs
[function]
[call site]
02068
kputll
[function]
[call site]
02069
kputc
[function]
[call site]
02070
ks_free
[function]
[call site]
02071
ks_initialize
[function]
[call site]
02072
hclose
[function]
[call site]
02073
hts_log
[function]
[call site]
02074
kh_destroy_s2i
[function]
[call site]
02075
kputsn
[function]
[call site]
02076
ks_release
[function]
[call site]
02077
sam_hdr_sanitise
[function]
[call site]
02078
hts_log
[function]
[call site]
02079
hts_log
[function]
[call site]
02080
hts_log
[function]
[call site]
02081
hts_log
[function]
[call site]
02082
sam_hdr_destroy
[function]
[call site]
02083
realloc
[call site]
02084
sam_hdr_destroy
[function]
[call site]
02085
sam_hdr_destroy
[function]
[call site]
02086
ks_free
[function]
[call site]
02087
kh_destroy_s2i
[function]
[call site]
02088
kh_destroy_s2i
[function]
[call site]
02089
sam_hdr_init
[function]
[call site]
02090
__errno_location
[call site]
02091
__errno_location
[call site]
02092
hts_close_or_abort
[function]
[call site]
02093
hts_close
[function]
[call site]
02094
bgzf_close
[function]
[call site]
02095
cram_eof
[function]
[call site]
02096
hts_log
[function]
[call site]
02097
cram_close
[function]
[call site]
02098
cram_update_curr_slice
[function]
[call site]
02099
cram_flush_container_mt
[function]
[call site]
02100
pthread_mutex_lock
[call site]
02101
reset_metrics
[function]
[call site]
02102
pthread_mutex_unlock
[call site]
02103
hts_tpool_process_flush
[function]
[call site]
02104
pthread_mutex_lock
[call site]
02105
pthread_mutex_unlock
[call site]
02106
cram_flush_container
[function]
[call site]
02107
cram_encode_container
[function]
[call site]
02108
pthread_mutex_lock
[call site]
02109
pthread_mutex_unlock
[call site]
02110
cram_get_ref
[function]
[call site]
02111
pthread_mutex_lock
[call site]
02112
hts_log
[function]
[call site]
02113
pthread_mutex_unlock
[call site]
02114
hts_log
[function]
[call site]
02115
pthread_mutex_unlock
[call site]
02116
hts_log
[function]
[call site]
02117
pthread_mutex_unlock
[call site]
02118
pthread_mutex_lock
[call site]
02119
hts_log
[function]
[call site]
02120
cram_populate_ref
[function]
[call site]
02121
getenv
[call site]
02122
getenv
[call site]
02123
hts_log
[function]
[call site]
02124
get_cache_basedir
[function]
[call site]
02125
getenv
[call site]
02126
getenv
[call site]
02127
getenv
[call site]
02128
getenv
[call site]
02129
snprintf
[call site]
02130
snprintf
[call site]
02131
hts_log
[function]
[call site]
02132
sam_hrecs_find_type_id
[function]
[call site]
02133
sam_hrecs_find_key
[function]
[call site]
02134
hts_log
[function]
[call site]
02135
expand_cache_path
[function]
[call site]
02136
strchr
[call site]
02137
strncpy
[call site]
02138
strlen
[call site]
02139
strcpy
[call site]
02140
strtol
[call site]
02141
strlen
[call site]
02142
strncpy
[call site]
02143
strlen
[call site]
02144
strcpy
[call site]
02145
strlen
[call site]
02146
strcpy
[call site]
02147
stat
[call site]
02148
bgzf_open
[function]
[call site]
02149
string_dup
[function]
[call site]
02150
bgzf_close
[function]
[call site]
02151
open_path_mfile
[function]
[call site]
02152
getenv
[call site]
02153
tokenise_search_path
[function]
[call site]
02154
strlen
[call site]
02155
strncmp
[call site]
02156
strncmp
[call site]
02157
strncmp
[call site]
02158
strncmp
[call site]
02159
find_file_url
[function]
[call site]
02160
expand_path
[function]
[call site]
02161
strlen
[call site]
02162
strlen
[call site]
02163
strchr
[call site]
02164
strtol
[call site]
02165
strncpy
[call site]
02166
strncpy
[call site]
02167
strlen
[call site]
02168
strlen
[call site]
02169
strcpy
[call site]
02170
__errno_location
[call site]
02171
__errno_location
[call site]
02172
hts_log
[function]
[call site]
02173
mfcreate
[function]
[call site]
02174
hread
[function]
[call site]
02175
mfwrite
[function]
[call site]
02176
hclose_abruptly
[function]
[call site]
02177
hclose
[function]
[call site]
02178
hts_log
[function]
[call site]
02179
mrewind
[function]
[call site]
02180
mfdestroy
[function]
[call site]
02181
strncmp
[call site]
02182
strncmp
[call site]
02183
strncmp
[call site]
02184
find_file_url
[function]
[call site]
02185
find_file_dir
[function]
[call site]
02186
expand_path
[function]
[call site]
02187
is_file
[function]
[call site]
02188
stat
[call site]
02189
mfopen
[function]
[call site]
02190
fopen
[call site]
02191
mfreopen
[function]
[call site]
02192
strchr
[call site]
02193
strchr
[call site]
02194
strchr
[call site]
02195
strchr
[call site]
02196
strchr
[call site]
02197
mfcreate
[function]
[call site]
02198
mfmmap
[function]
[call site]
02199
stat
[call site]
02200
mfload
[function]
[call site]
02201
stat
[call site]
02202
fread
[call site]
02203
fseek
[call site]
02204
mfcreate
[function]
[call site]
02205
hts_log
[function]
[call site]
02206
strlen
[call site]
02207
strrchr
[call site]
02208
find_file_dir
[function]
[call site]
02209
mfsteal
[function]
[call site]
02210
mfdetach
[function]
[call site]
02211
mfflush
[function]
[call site]
02212
fclose
[call site]
02213
mfdestroy
[function]
[call site]
02214
sam_hrecs_find_key
[function]
[call site]
02215
strncmp
[call site]
02216
bgzf_close
[function]
[call site]
02217
refs_load_fai
[function]
[call site]
02218
sanitise_SQ_lines
[function]
[call site]
02219
bgzf_close
[function]
[call site]
02220
refs2id
[function]
[call site]
02221
is_directory
[function]
[call site]
02222
stat
[call site]
02223
hts_log
[function]
[call site]
02224
expand_cache_path
[function]
[call site]
02225
hts_log
[function]
[call site]
02226
mkdir_prefix
[function]
[call site]
02227
strrchr
[call site]
02228
is_directory
[function]
[call site]
02229
mkdir
[call site]
02230
chmod
[call site]
02231
mkdir_prefix
[function]
[call site]
02232
mkdir
[call site]
02233
chmod
[call site]
02234
hts_open_tmpfile
[function]
[call site]
02235
getpid
[call site]
02236
time
[call site]
02237
ks_clear
[function]
[call site]
02238
ksprintf
[function]
[call site]
02239
hopen
[function]
[call site]
02240
__errno_location
[call site]
02241
perror
[call site]
02242
hts_md5_init
[function]
[call site]
02243
hts_md5_reset
[function]
[call site]
02244
hclose_abruptly
[function]
[call site]
02245
unlink
[call site]
02246
hts_md5_update
[function]
[call site]
02247
body
[function]
[call site]
02248
body
[function]
[call site]
02249
hts_md5_final
[function]
[call site]
02250
body
[function]
[call site]
02251
body
[function]
[call site]
02252
hts_md5_destroy
[function]
[call site]
02253
hts_md5_hex
[function]
[call site]
02254
strncmp
[call site]
02255
hts_log
[function]
[call site]
02256
hclose_abruptly
[function]
[call site]
02257
unlink
[call site]
02258
hwrite
[function]
[call site]
02259
hclose
[function]
[call site]
02260
chmod
[call site]
02261
rename
[call site]
02262
__errno_location
[call site]
02263
hts_log
[function]
[call site]
02264
unlink
[call site]
02265
hts_log
[function]
[call site]
02266
pthread_mutex_unlock
[call site]
02267
pthread_mutex_unlock
[call site]
02268
cram_ref_incr_locked
[function]
[call site]
02269
cram_ref_incr_locked
[function]
[call site]
02270
cram_ref_load
[function]
[call site]
02271
__assert_fail
[call site]
02272
__assert_fail
[call site]
02273
ref_entry_free_seq
[function]
[call site]
02274
strcmp
[call site]
02275
bgzf_close
[function]
[call site]
02276
bgzf_open_ref
[function]
[call site]
02277
load_ref_portion
[function]
[call site]
02278
bgzf_useek
[function]
[call site]
02279
hseek
[function]
[call site]
02280
bgzf_read_block
[function]
[call site]
02281
bgzf_seek_common
[function]
[call site]
02282
pthread_mutex_lock
[call site]
02283
pthread_cond_signal
[call site]
02284
hts_tpool_wake_dispatch
[function]
[call site]
02285
pthread_cond_wait
[call site]
02286
pthread_cond_signal
[call site]
02287
abort
[call site]
02288
pthread_mutex_unlock
[call site]
02289
hseek
[function]
[call site]
02290
bgzf_read_block
[function]
[call site]
02291
perror
[call site]
02292
bgzf_read
[function]
[call site]
02293
perror
[call site]
02294
toupper_c
[function]
[call site]
02295
toupper
[call site]
02296
hts_log
[function]
[call site]
02297
toupper_c
[function]
[call site]
02298
pthread_mutex_unlock
[call site]
02299
pthread_mutex_unlock
[call site]
02300
cram_ref_incr_locked
[function]
[call site]
02301
pthread_mutex_unlock
[call site]
02302
pthread_mutex_unlock
[call site]
02303
pthread_mutex_unlock
[call site]
02304
pthread_mutex_unlock
[call site]
02305
strcmp
[call site]
02306
bgzf_close
[function]
[call site]
02307
bgzf_open_ref
[function]
[call site]
02308
pthread_mutex_unlock
[call site]
02309
pthread_mutex_unlock
[call site]
02310
load_ref_portion
[function]
[call site]
02311
pthread_mutex_unlock
[call site]
02312
pthread_mutex_unlock
[call site]
02313
pthread_mutex_unlock
[call site]
02314
pthread_mutex_unlock
[call site]
02315
validate_md5
[function]
[call site]
02316
sam_hrecs_find_type_id
[function]
[call site]
02317
sam_hrecs_find_key
[function]
[call site]
02318
hts_md5_init
[function]
[call site]
02319
hts_md5_update
[function]
[call site]
02320
hts_md5_final
[function]
[call site]
02321
hts_md5_destroy
[function]
[call site]
02322
hts_md5_hex
[function]
[call site]
02323
strcmp
[call site]
02324
hts_log
[function]
[call site]
02325
hts_log
[function]
[call site]
02326
cram_get_ref
[function]
[call site]
02327
hts_log
[function]
[call site]
02328
hts_log
[function]
[call site]
02329
hts_log
[function]
[call site]
02330
hts_log
[function]
[call site]
02331
pthread_mutex_lock
[call site]
02332
pthread_mutex_unlock
[call site]
02333
validate_md5
[function]
[call site]
02334
cram_ref_incr
[function]
[call site]
02335
pthread_mutex_lock
[call site]
02336
cram_ref_incr_locked
[function]
[call site]
02337
pthread_mutex_unlock
[call site]
02338
__assert_fail
[call site]
02339
lossy_read_names
[function]
[call site]
02340
kh_init_m_s2u64
[function]
[call site]
02341
calloc
[call site]
02342
expected_template_count
[function]
[call site]
02343
bam_aux_get
[function]
[call site]
02344
bam_aux_first
[function]
[call site]
02345
__errno_location
[call site]
02346
skip_aux
[function]
[call site]
02347
aux_type2size
[function]
[call site]
02348
aux_type2size
[function]
[call site]
02349
le_to_u32
[function]
[call site]
02350
hts_log
[function]
[call site]
02351
__errno_location
[call site]
02352
bam_aux2i
[function]
[call site]
02353
get_int_aux_val
[function]
[call site]
02354
le_to_i8
[function]
[call site]
02355
le_to_i16
[function]
[call site]
02356
le_to_u16
[function]
[call site]
02357
le_to_i32
[function]
[call site]
02358
le_to_u32
[function]
[call site]
02359
__errno_location
[call site]
02360
bam_aux_get
[function]
[call site]
02361
kh_put_m_s2u64
[function]
[call site]
02362
kh_resize_m_s2u64
[function]
[call site]
02363
__ac_X31_hash_string
[function]
[call site]
02364
kh_get_m_s2u64
[function]
[call site]
02365
kh_destroy_m_s2u64
[function]
[call site]
02366
cram_generate_reference
[function]
[call site]
02367
extend_ref
[function]
[call site]
02368
realloc
[call site]
02369
realloc
[call site]
02370
hts_log
[function]
[call site]
02371
cram_add_to_ref
[function]
[call site]
02372
bam_aux_get
[function]
[call site]
02373
cram_add_to_ref_MD
[function]
[call site]
02374
__ctype_b_loc
[call site]
02375
hts_str2uint
[function]
[call site]
02376
extend_ref
[function]
[call site]
02377
next_cigar_op
[function]
[call site]
02378
hts_log
[function]
[call site]
02379
extend_ref
[function]
[call site]
02380
next_cigar_op
[function]
[call site]
02381
hts_log
[function]
[call site]
02382
extend_ref
[function]
[call site]
02383
next_cigar_op
[function]
[call site]
02384
hts_log
[function]
[call site]
02385
extend_ref
[function]
[call site]
02386
hts_log
[function]
[call site]
02387
cram_ref_decr
[function]
[call site]
02388
pthread_mutex_lock
[call site]
02389
cram_ref_decr_locked
[function]
[call site]
02390
__assert_fail
[call site]
02391
ref_entry_free_seq
[function]
[call site]
02392
pthread_mutex_unlock
[call site]
02393
cram_get_ref
[function]
[call site]
02394
hts_log
[function]
[call site]
02395
validate_md5
[function]
[call site]
02396
process_one_read
[function]
[call site]
02397
bam_aux_get
[function]
[call site]
02398
bam_aux_get
[function]
[call site]
02399
cram_stats_add
[function]
[call site]
02400
kh_init_m_i2i
[function]
[call site]
02401
calloc
[call site]
02402
kh_put_m_i2i
[function]
[call site]
02403
cram_stats_add
[function]
[call site]
02404
cram_stats_add
[function]
[call site]
02405
block_grow
[function]
[call site]
02406
block_grow
[function]
[call site]
02407
nibble2base
[function]
[call site]
02408
realloc
[call site]
02409
hts_log
[function]
[call site]
02410
kputuw
[function]
[call site]
02411
kputc
[function]
[call site]
02412
cram_add_substitution
[function]
[call site]
02413
cram_stats_add
[function]
[call site]
02414
cram_stats_add
[function]
[call site]
02415
cram_stats_add
[function]
[call site]
02416
block_append_char
[function]
[call site]
02417
block_grow
[function]
[call site]
02418
cram_add_feature
[function]
[call site]
02419
realloc
[call site]
02420
cram_stats_add
[function]
[call site]
02421
cram_stats_add
[function]
[call site]
02422
cram_stats_add
[function]
[call site]
02423
cram_add_bases
[function]
[call site]
02424
cram_add_feature
[function]
[call site]
02425
cram_add_base
[function]
[call site]
02426
cram_stats_add
[function]
[call site]
02427
cram_stats_add
[function]
[call site]
02428
block_append_char
[function]
[call site]
02429
cram_add_feature
[function]
[call site]
02430
cram_add_base
[function]
[call site]
02431
kputuw
[function]
[call site]
02432
kputc_
[function]
[call site]
02433
kputsn
[function]
[call site]
02434
cram_add_deletion
[function]
[call site]
02435
cram_stats_add
[function]
[call site]
02436
cram_add_feature
[function]
[call site]
02437
cram_add_skip
[function]
[call site]
02438
cram_stats_add
[function]
[call site]
02439
cram_add_feature
[function]
[call site]
02440
cram_add_insertion
[function]
[call site]
02441
cram_stats_add
[function]
[call site]
02442
block_append
[function]
[call site]
02443
block_append_char
[function]
[call site]
02444
block_append_char
[function]
[call site]
02445
cram_add_feature
[function]
[call site]
02446
cram_add_quality
[function]
[call site]
02447
cram_stats_add
[function]
[call site]
02448
block_append_char
[function]
[call site]
02449
cram_add_feature
[function]
[call site]
02450
cram_add_softclip
[function]
[call site]
02451
block_append
[function]
[call site]
02452
block_append_char
[function]
[call site]
02453
block_append
[function]
[call site]
02454
block_append_char
[function]
[call site]
02455
block_append_char
[function]
[call site]
02456
cram_add_feature
[function]
[call site]
02457
cram_add_quality
[function]
[call site]
02458
cram_add_quality
[function]
[call site]
02459
cram_add_hardclip
[function]
[call site]
02460
cram_stats_add
[function]
[call site]
02461
cram_add_feature
[function]
[call site]
02462
cram_add_pad
[function]
[call site]
02463
cram_stats_add
[function]
[call site]
02464
cram_add_feature
[function]
[call site]
02465
hts_log
[function]
[call site]
02466
hts_log
[function]
[call site]
02467
cram_stats_add
[function]
[call site]
02468
kputuw
[function]
[call site]
02469
cram_stats_add
[function]
[call site]
02470
cram_encode_aux
[function]
[call site]
02471
sam_hrecs_find_rg
[function]
[call site]
02472
kh_get_m_s2i
[function]
[call site]
02473
block_append
[function]
[call site]
02474
hts_log
[function]
[call site]
02475
strncasecmp
[call site]
02476
block_append
[function]
[call site]
02477
bam_aux2i
[function]
[call site]
02478
block_append
[function]
[call site]
02479
block_append
[function]
[call site]
02480
kh_put_m_tagmap
[function]
[call site]
02481
kh_resize_m_tagmap
[function]
[call site]
02482
realloc
[call site]
02483
pthread_mutex_lock
[call site]
02484
kh_put_m_metrics
[function]
[call site]
02485
kh_resize_m_metrics
[function]
[call site]
02486
pthread_mutex_unlock
[call site]
02487
cram_new_metrics
[function]
[call site]
02488
kh_del_m_metrics
[function]
[call site]
02489
pthread_mutex_unlock
[call site]
02490
pthread_mutex_unlock
[call site]
02491
calloc
[call site]
02492
cram_encoder_init
[function]
[call site]
02493
cram_encoding2str
[function]
[call site]
02494
hts_log
[function]
[call site]
02495
cram_encoding2str
[function]
[call site]
02496
hts_log
[function]
[call site]
02497
abort
[call site]
02498
cram_stats_add
[function]
[call site]
02499
cram_stats_encoding
[function]
[call site]
02500
realloc
[call site]
02501
realloc
[call site]
02502
cram_encoder_init
[function]
[call site]
02503
cram_stats_add
[function]
[call site]
02504
cram_stats_encoding
[function]
[call site]
02505
cram_encoder_init
[function]
[call site]
02506
cram_stats_add
[function]
[call site]
02507
cram_stats_encoding
[function]
[call site]
02508
cram_encoder_init
[function]
[call site]
02509
cram_encoder_init
[function]
[call site]
02510
hts_log
[function]
[call site]
02511
pthread_mutex_lock
[call site]
02512
cram_new_block
[function]
[call site]
02513
block_append_char
[function]
[call site]
02514
cram_new_block
[function]
[call site]
02515
block_append
[function]
[call site]
02516
cram_new_block
[function]
[call site]
02517
block_append
[function]
[call site]
02518
cram_new_block
[function]
[call site]
02519
block_append
[function]
[call site]
02520
cram_new_block
[function]
[call site]
02521
cram_new_block
[function]
[call site]
02522
cram_new_block
[function]
[call site]
02523
hts_log
[function]
[call site]
02524
hts_log
[function]
[call site]
02525
block_append_char
[function]
[call site]
02526
string_ndup
[function]
[call site]
02527
kh_put_m_s2i
[function]
[call site]
02528
kh_resize_m_s2i
[function]
[call site]
02529
__ac_X31_hash_string
[function]
[call site]
02530
cram_stats_add
[function]
[call site]
02531
sam_hrecs_find_rg
[function]
[call site]
02532
cram_stats_add
[function]
[call site]
02533
block_grow
[function]
[call site]
02534
block_grow
[function]
[call site]
02535
cram_stats_add
[function]
[call site]
02536
string_ndup
[function]
[call site]
02537
kh_put_m_s2i
[function]
[call site]
02538
llabs
[call site]
02539
cram_stats_add
[function]
[call site]
02540
cram_stats_add
[function]
[call site]
02541
cram_stats_del
[function]
[call site]
02542
kh_get_m_i2i
[function]
[call site]
02543
kh_del_m_i2i
[function]
[call site]
02544
hts_log
[function]
[call site]
02545
hts_log
[function]
[call site]
02546
cram_stats_del
[function]
[call site]
02547
cram_stats_del
[function]
[call site]
02548
cram_stats_del
[function]
[call site]
02549
cram_stats_add
[function]
[call site]
02550
cram_stats_del
[function]
[call site]
02551
cram_stats_add
[function]
[call site]
02552
cram_stats_add
[function]
[call site]
02553
cram_stats_add
[function]
[call site]
02554
cram_stats_add
[function]
[call site]
02555
cram_stats_add
[function]
[call site]
02556
cram_stats_add
[function]
[call site]
02557
cram_stats_add
[function]
[call site]
02558
cram_stats_add
[function]
[call site]
02559
add_read_names
[function]
[call site]
02560
block_append
[function]
[call site]
02561
block_append
[function]
[call site]
02562
cram_stats_add
[function]
[call site]
02563
calloc
[call site]
02564
__assert_fail
[call site]
02565
cram_ref_decr
[function]
[call site]
02566
pthread_mutex_lock
[call site]
02567
pthread_mutex_unlock
[call site]
02568
cram_stats_encoding
[function]
[call site]
02569
pthread_mutex_lock
[call site]
02570
pthread_mutex_unlock
[call site]
02571
hts_log
[function]
[call site]
02572
hts_md5_init
[function]
[call site]
02573
hts_md5_update
[function]
[call site]
02574
hts_md5_final
[function]
[call site]
02575
hts_md5_destroy
[function]
[call site]
02576
cram_stats_encoding
[function]
[call site]
02577
cram_encoder_init
[function]
[call site]
02578
cram_stats_encoding
[function]
[call site]
02579
cram_encoder_init
[function]
[call site]
02580
cram_stats_encoding
[function]
[call site]
02581
cram_encoder_init
[function]
[call site]
02582
cram_encoder_init
[function]
[call site]
02583
cram_encoder_init
[function]
[call site]
02584
cram_stats_encoding
[function]
[call site]
02585
cram_encoder_init
[function]
[call site]
02586
cram_stats_encoding
[function]
[call site]
02587
cram_encoder_init
[function]
[call site]
02588
cram_stats_encoding
[function]
[call site]
02589
cram_encoder_init
[function]
[call site]
02590
cram_stats_encoding
[function]
[call site]
02591
cram_encoder_init
[function]
[call site]
02592
cram_stats_encoding
[function]
[call site]
02593
cram_encoder_init
[function]
[call site]
02594
cram_stats_encoding
[function]
[call site]
02595
cram_encoder_init
[function]
[call site]
02596
cram_stats_encoding
[function]
[call site]
02597
cram_encoder_init
[function]
[call site]
02598
cram_stats_encoding
[function]
[call site]
02599
cram_encoder_init
[function]
[call site]
02600
cram_stats_encoding
[function]
[call site]
02601
cram_encoder_init
[function]
[call site]
02602
cram_stats_encoding
[function]
[call site]
02603
cram_encoder_init
[function]
[call site]
02604
cram_stats_encoding
[function]
[call site]
02605
cram_encoder_init
[function]
[call site]
02606
cram_stats_encoding
[function]
[call site]
02607
cram_encoder_init
[function]
[call site]
02608
cram_stats_encoding
[function]
[call site]
02609
cram_encoder_init
[function]
[call site]
02610
cram_encoder_init
[function]
[call site]
02611
cram_stats_encoding
[function]
[call site]
02612
cram_encoder_init
[function]
[call site]
02613
cram_stats_encoding
[function]
[call site]
02614
cram_encoder_init
[function]
[call site]
02615
cram_stats_encoding
[function]
[call site]
02616
cram_encoder_init
[function]
[call site]
02617
cram_stats_encoding
[function]
[call site]
02618
cram_encoder_init
[function]
[call site]
02619
cram_stats_encoding
[function]
[call site]
02620
cram_encoder_init
[function]
[call site]
02621
cram_stats_encoding
[function]
[call site]
02622
cram_encoder_init
[function]
[call site]
02623
cram_stats_encoding
[function]
[call site]
02624
cram_encoder_init
[function]
[call site]
02625
cram_stats_encoding
[function]
[call site]
02626
cram_encoder_init
[function]
[call site]
02627
cram_encoder_init
[function]
[call site]
02628
cram_encoder_init
[function]
[call site]
02629
cram_encoder_init
[function]
[call site]
02630
cram_encoder_init
[function]
[call site]
02631
hts_log
[function]
[call site]
02632
cram_encode_slice
[function]
[call site]
02633
cram_new_block
[function]
[call site]
02634
cram_new_block
[function]
[call site]
02635
cram_new_block
[function]
[call site]
02636
block_append
[function]
[call site]
02637
cram_allocate_block
[function]
[call site]
02638
cram_new_block
[function]
[call site]
02639
cram_new_block
[function]
[call site]
02640
cram_allocate_block
[function]
[call site]
02641
cram_allocate_block
[function]
[call site]
02642
cram_allocate_block
[function]
[call site]
02643
cram_allocate_block
[function]
[call site]
02644
cram_allocate_block
[function]
[call site]
02645
cram_new_block
[function]
[call site]
02646
cram_allocate_block
[function]
[call site]
02647
cram_new_block
[function]
[call site]
02648
cram_encode_slice_read
[function]
[call site]
02649
hts_log
[function]
[call site]
02650
cram_free_block
[function]
[call site]
02651
cram_free_block
[function]
[call site]
02652
cram_free_block
[function]
[call site]
02653
cram_free_block
[function]
[call site]
02654
cram_compress_slice
[function]
[call site]
02655
cram_compress_block2
[function]
[call site]
02656
pthread_mutex_unlock
[call site]
02657
cram_compress_by_method
[function]
[call site]
02658
zlib_mem_deflate
[function]
[call site]
02659
deflateInit2_
[call site]
02660
hts_log
[function]
[call site]
02661
hts_log
[function]
[call site]
02662
deflate
[call site]
02663
hts_log
[function]
[call site]
02664
deflate
[call site]
02665
hts_log
[function]
[call site]
02666
deflateEnd
[call site]
02667
hts_log
[function]
[call site]
02668
BZ2_bzBuffToBuffCompress
[call site]
02669
fqz_compress
[function]
[call site]
02670
compress_block_fqz2f
[function]
[call site]
02671
fqz_pick_parameters
[function]
[call site]
02672
calloc
[call site]
02673
fqz_qual_stats
[function]
[call site]
02674
calloc
[call site]
02675
memcmp
[call site]
02676
log
[call site]
02677
log
[call site]
02678
log
[call site]
02679
log
[call site]
02680
log
[call site]
02681
log
[call site]
02682
log
[call site]
02683
var_put_u32
[function]
[call site]
02684
var_put_u32_safe
[function]
[call site]
02685
fqz_store_parameters
[function]
[call site]
02686
store_array
[function]
[call site]
02687
fqz_store_parameters1
[function]
[call site]
02688
store_array
[function]
[call site]
02689
store_array
[function]
[call site]
02690
store_array
[function]
[call site]
02691
fqz_create_models
[function]
[call site]
02692
RC_SetOutput
[function]
[call site]
02693
RC_StartEncode
[function]
[call site]
02694
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02695
RC_Encode
[function]
[call site]
02696
RC_ShiftLow
[function]
[call site]
02697
SIMPLE_MODEL256_normalize
[function]
[call site]
02698
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02699
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02700
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02701
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02702
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02703
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02704
memcmp
[call site]
02705
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02706
SIMPLE_MODEL2_encodeSymbol
[function]
[call site]
02707
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02708
fqz_update_ctx
[function]
[call site]
02709
RC_FinishEncode
[function]
[call site]
02710
RC_ShiftLow
[function]
[call site]
02711
RC_OutSize
[function]
[call site]
02712
fqz_destroy_models
[function]
[call site]
02713
fqz_free_parameters
[function]
[call site]
02714
lzma_mem_deflate
[function]
[call site]
02715
lzma_stream_buffer_bound
[call site]
02716
lzma_easy_buffer_encode
[call site]
02717
rans_compress
[function]
[call site]
02718
rans_compress_O1
[function]
[call site]
02719
rans_compress_O0
[function]
[call site]
02720
hist8
[function]
[call site]
02721
htscodecs_tls_calloc
[function]
[call site]
02722
htscodecs_tls_free
[function]
[call site]
02723
RansEncSymbolInit
[function]
[call site]
02724
__assert_fail
[call site]
02725
__assert_fail
[call site]
02726
__assert_fail
[call site]
02727
RansEncInit
[function]
[call site]
02728
RansEncInit
[function]
[call site]
02729
RansEncInit
[function]
[call site]
02730
RansEncInit
[function]
[call site]
02731
RansEncPutSymbol
[function]
[call site]
02732
__assert_fail
[call site]
02733
RansEncPutSymbol
[function]
[call site]
02734
RansEncPutSymbol
[function]
[call site]
02735
RansEncPutSymbol
[function]
[call site]
02736
RansEncPutSymbol
[function]
[call site]
02737
RansEncPutSymbol
[function]
[call site]
02738
RansEncPutSymbol
[function]
[call site]
02739
RansEncFlush
[function]
[call site]
02740
RansEncFlush
[function]
[call site]
02741
RansEncFlush
[function]
[call site]
02742
RansEncFlush
[function]
[call site]
02743
htscodecs_tls_alloc
[function]
[call site]
02744
hist1_4
[function]
[call site]
02745
htscodecs_tls_calloc
[function]
[call site]
02746
RansEncSymbolInit
[function]
[call site]
02747
RansEncInit
[function]
[call site]
02748
RansEncInit
[function]
[call site]
02749
RansEncInit
[function]
[call site]
02750
RansEncInit
[function]
[call site]
02751
RansEncPutSymbol
[function]
[call site]
02752
RansEncPutSymbol4
[function]
[call site]
02753
__assert_fail
[call site]
02754
__assert_fail
[call site]
02755
RansEncPutSymbol
[function]
[call site]
02756
RansEncPutSymbol
[function]
[call site]
02757
RansEncPutSymbol
[function]
[call site]
02758
RansEncPutSymbol
[function]
[call site]
02759
RansEncFlush
[function]
[call site]
02760
RansEncFlush
[function]
[call site]
02761
RansEncFlush
[function]
[call site]
02762
RansEncFlush
[function]
[call site]
02763
htscodecs_tls_free
[function]
[call site]
02764
rans_compress_O0
[function]
[call site]
02765
rans_compress_4x16
[function]
[call site]
02766
rans_compress_to_4x16
[function]
[call site]
02767
rans_compress_bound_4x16
[function]
[call site]
02768
var_put_u32
[function]
[call site]
02769
rans_compress_to_4x16
[function]
[call site]
02770
var_put_u32
[function]
[call site]
02771
var_put_u32
[function]
[call site]
02772
var_put_u32
[function]
[call site]
02773
hts_pack
[function]
[call site]
02774
var_put_u32
[function]
[call site]
02775
hts_rle_encode
[function]
[call site]
02776
rle_find_syms
[function]
[call site]
02777
var_put_u32
[function]
[call site]
02778
var_put_u32
[function]
[call site]
02779
rans_enc_func
[function]
[call site]
02780
__get_cpuid_max
[function]
[call site]
02781
rans_compress_O1_32x16_avx512
[function]
[call site]
02782
rans_compress_bound_4x16
[function]
[call site]
02783
htscodecs_tls_alloc
[function]
[call site]
02784
encode_freq1
[function]
[call site]
02785
htscodecs_tls_calloc
[function]
[call site]
02786
hist1_4
[function]
[call site]
02787
encode_alphabet
[function]
[call site]
02788
rans_compute_shift
[function]
[call site]
02789
round2
[function]
[call site]
02790
log
[call site]
02791
fast_log
[function]
[call site]
02792
fast_log
[function]
[call site]
02793
normalise_freq
[function]
[call site]
02794
encode_freq_d
[function]
[call site]
02795
var_put_u32
[function]
[call site]
02796
__assert_fail
[call site]
02797
normalise_freq_shift
[function]
[call site]
02798
RansEncSymbolInit
[function]
[call site]
02799
__assert_fail
[call site]
02800
__assert_fail
[call site]
02801
rans_compress_O0_4x16
[function]
[call site]
02802
rans_compress_bound_4x16
[function]
[call site]
02803
hist8
[function]
[call site]
02804
round2
[function]
[call site]
02805
normalise_freq
[function]
[call site]
02806
encode_freq
[function]
[call site]
02807
encode_alphabet
[function]
[call site]
02808
var_put_u32
[function]
[call site]
02809
normalise_freq
[function]
[call site]
02810
RansEncSymbolInit
[function]
[call site]
02811
RansEncInit
[function]
[call site]
02812
RansEncInit
[function]
[call site]
02813
RansEncInit
[function]
[call site]
02814
RansEncInit
[function]
[call site]
02815
RansEncPutSymbol
[function]
[call site]
02816
RansEncPutSymbol
[function]
[call site]
02817
RansEncPutSymbol
[function]
[call site]
02818
RansEncPutSymbol
[function]
[call site]
02819
RansEncPutSymbol
[function]
[call site]
02820
RansEncPutSymbol
[function]
[call site]
02821
RansEncPutSymbol
[function]
[call site]
02822
RansEncFlush
[function]
[call site]
02823
RansEncFlush
[function]
[call site]
02824
RansEncFlush
[function]
[call site]
02825
RansEncFlush
[function]
[call site]
02826
var_put_u32
[function]
[call site]
02827
var_put_u32
[function]
[call site]
02828
htscodecs_tls_free
[function]
[call site]
02829
htscodecs_tls_free
[function]
[call site]
02830
htscodecs_tls_free
[function]
[call site]
02831
RansEncInit
[function]
[call site]
02832
RansEncPutSymbol
[function]
[call site]
02833
RansEncPutSymbol
[function]
[call site]
02834
RansEncFlush
[function]
[call site]
02835
htscodecs_tls_free
[function]
[call site]
02836
rans_compress_O1_32x16_avx2
[function]
[call site]
02837
rans_compress_bound_4x16
[function]
[call site]
02838
htscodecs_tls_alloc
[function]
[call site]
02839
encode_freq1
[function]
[call site]
02840
htscodecs_tls_free
[function]
[call site]
02841
RansEncInit
[function]
[call site]
02842
RansEncPutSymbol
[function]
[call site]
02843
_mm256_mulhi_epu32
[function]
[call site]
02844
_mm256_mulhi_epu32
[function]
[call site]
02845
_mm256_mulhi_epu32
[function]
[call site]
02846
_mm256_mulhi_epu32
[function]
[call site]
02847
RansEncPutSymbol
[function]
[call site]
02848
RansEncFlush
[function]
[call site]
02849
htscodecs_tls_free
[function]
[call site]
02850
rans_compress_O1_32x16
[function]
[call site]
02851
rans_compress_bound_4x16
[function]
[call site]
02852
htscodecs_tls_alloc
[function]
[call site]
02853
encode_freq1
[function]
[call site]
02854
htscodecs_tls_free
[function]
[call site]
02855
RansEncInit
[function]
[call site]
02856
RansEncPutSymbol
[function]
[call site]
02857
RansEncPutSymbol
[function]
[call site]
02858
RansEncFlush
[function]
[call site]
02859
htscodecs_tls_free
[function]
[call site]
02860
rans_compress_O1_32x16
[function]
[call site]
02861
rans_compress_O0_32x16_avx512
[function]
[call site]
02862
rans_compress_bound_4x16
[function]
[call site]
02863
hist8
[function]
[call site]
02864
round2
[function]
[call site]
02865
normalise_freq
[function]
[call site]
02866
encode_freq
[function]
[call site]
02867
normalise_freq
[function]
[call site]
02868
RansEncSymbolInit
[function]
[call site]
02869
RansEncInit
[function]
[call site]
02870
RansEncPutSymbol
[function]
[call site]
02871
RansEncFlush
[function]
[call site]
02872
rans_compress_O0_32x16_avx2
[function]
[call site]
02873
rans_compress_bound_4x16
[function]
[call site]
02874
hist8
[function]
[call site]
02875
round2
[function]
[call site]
02876
normalise_freq
[function]
[call site]
02877
encode_freq
[function]
[call site]
02878
normalise_freq
[function]
[call site]
02879
RansEncSymbolInit
[function]
[call site]
02880
RansEncPutSymbol
[function]
[call site]
02881
_mm256_mulhi_epu32
[function]
[call site]
02882
_mm256_mulhi_epu32
[function]
[call site]
02883
_mm256_mulhi_epu32
[function]
[call site]
02884
_mm256_mulhi_epu32
[function]
[call site]
02885
RansEncFlush
[function]
[call site]
02886
rans_compress_O0_32x16
[function]
[call site]
02887
rans_compress_bound_4x16
[function]
[call site]
02888
hist8e
[function]
[call site]
02889
round2
[function]
[call site]
02890
normalise_freq
[function]
[call site]
02891
encode_freq
[function]
[call site]
02892
normalise_freq
[function]
[call site]
02893
RansEncInit
[function]
[call site]
02894
RansEncPutSymbol
[function]
[call site]
02895
RansEncPutSymbol_branched
[function]
[call site]
02896
RansEncPutSymbol_branched
[function]
[call site]
02897
RansEncPutSymbol_branched
[function]
[call site]
02898
RansEncPutSymbol_branched
[function]
[call site]
02899
RansEncPutSymbol_branched
[function]
[call site]
02900
RansEncPutSymbol_branched
[function]
[call site]
02901
RansEncPutSymbol_branched
[function]
[call site]
02902
RansEncPutSymbol_branched
[function]
[call site]
02903
abort
[call site]
02904
RansEncFlush
[function]
[call site]
02905
rans_compress_O0_32x16
[function]
[call site]
02906
var_put_u32
[function]
[call site]
02907
var_put_u32
[function]
[call site]
02908
var_put_u32
[function]
[call site]
02909
rans_enc_func
[function]
[call site]
02910
arith_compress_to
[function]
[call site]
02911
arith_compress_bound
[function]
[call site]
02912
var_put_u32
[function]
[call site]
02913
var_put_u32
[function]
[call site]
02914
arith_compress_to
[function]
[call site]
02915
arith_compress_to
[function]
[call site]
02916
var_put_u32
[function]
[call site]
02917
var_put_u32
[function]
[call site]
02918
hts_pack
[function]
[call site]
02919
var_put_u32
[function]
[call site]
02920
arith_compress_O0_RLE
[function]
[call site]
02921
arith_compress_bound
[function]
[call site]
02922
SIMPLE_MODEL256_init
[function]
[call site]
02923
htscodecs_tls_alloc
[function]
[call site]
02924
SIMPLE_MODEL258_init
[function]
[call site]
02925
RC_SetOutput
[function]
[call site]
02926
RC_StartEncode
[function]
[call site]
02927
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02928
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02929
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02930
RC_FinishEncode
[function]
[call site]
02931
RC_OutSize
[function]
[call site]
02932
htscodecs_tls_free
[function]
[call site]
02933
arith_compress_O1_RLE
[function]
[call site]
02934
arith_compress_bound
[function]
[call site]
02935
htscodecs_tls_alloc
[function]
[call site]
02936
SIMPLE_MODEL256_init
[function]
[call site]
02937
htscodecs_tls_alloc
[function]
[call site]
02938
htscodecs_tls_free
[function]
[call site]
02939
SIMPLE_MODEL258_init
[function]
[call site]
02940
RC_SetOutput
[function]
[call site]
02941
RC_StartEncode
[function]
[call site]
02942
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02943
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02944
SIMPLE_MODEL258_encodeSymbol
[function]
[call site]
02945
RC_FinishEncode
[function]
[call site]
02946
RC_OutSize
[function]
[call site]
02947
htscodecs_tls_free
[function]
[call site]
02948
htscodecs_tls_free
[function]
[call site]
02949
arith_compress_O1
[function]
[call site]
02950
arith_compress_bound
[function]
[call site]
02951
SIMPLE_MODEL256_init
[function]
[call site]
02952
RC_SetOutput
[function]
[call site]
02953
RC_StartEncode
[function]
[call site]
02954
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02955
RC_FinishEncode
[function]
[call site]
02956
RC_OutSize
[function]
[call site]
02957
htscodecs_tls_free
[function]
[call site]
02958
arith_compress_O0
[function]
[call site]
02959
arith_compress_bound
[function]
[call site]
02960
SIMPLE_MODEL256_init
[function]
[call site]
02961
RC_SetOutput
[function]
[call site]
02962
RC_StartEncode
[function]
[call site]
02963
SIMPLE_MODEL256_encodeSymbol
[function]
[call site]
02964
RC_FinishEncode
[function]
[call site]
02965
RC_OutSize
[function]
[call site]
02966
tok3_encode_names
[function]
[call site]
02967
create_context
[function]
[call site]
02968
build_trie
[function]
[call site]
02969
calloc
[call site]
02970
pool_create
[function]
[call site]
02971
pool_alloc
[function]
[call site]
02972
new_pool
[function]
[call site]
02973
realloc
[call site]
02974
free_context
[function]
[call site]
02975
encode_name
[function]
[call site]
02976
search_trie
[function]
[call site]
02977
calloc
[call site]
02978
encode_token_dup
[function]
[call site]
02979
encode_token_int
[function]
[call site]
02980
encode_token_type
[function]
[call site]
02981
descriptor_grow
[function]
[call site]
02982
realloc
[call site]
02983
descriptor_grow
[function]
[call site]
02984
encode_token_diff
[function]
[call site]
02985
encode_token_int
[function]
[call site]
02986
memcmp
[call site]
02987
encode_token_match
[function]
[call site]
02988
encode_token_type
[function]
[call site]
02989
encode_token_alpha
[function]
[call site]
02990
encode_token_type
[function]
[call site]
02991
descriptor_grow
[function]
[call site]
02992
encode_token_alpha
[function]
[call site]
02993
__ctype_b_loc
[call site]
02994
memcmp
[call site]
02995
encode_token_match
[function]
[call site]
02996
encode_token_alpha
[function]
[call site]
02997
encode_token_alpha
[function]
[call site]
02998
__ctype_b_loc
[call site]
02999
encode_token_match
[function]
[call site]
03000
encode_token_int1
[function]
[call site]
03001
encode_token_type
[function]
[call site]
03002
descriptor_grow
[function]
[call site]
03003
encode_token_int1_
[function]
[call site]
03004
descriptor_grow
[function]
[call site]
03005
encode_token_int
[function]
[call site]
03006
encode_token_int1_
[function]
[call site]
03007
encode_token_int
[function]
[call site]
03008
__ctype_b_loc
[call site]
03009
__ctype_b_loc
[call site]
03010
encode_token_match
[function]
[call site]
03011
encode_token_int1
[function]
[call site]
03012
encode_token_int
[function]
[call site]
03013
encode_token_int
[function]
[call site]
03014
encode_token_match
[function]
[call site]
03015
encode_token_char
[function]
[call site]
03016
encode_token_type
[function]
[call site]
03017
descriptor_grow
[function]
[call site]
03018
encode_token_char
[function]
[call site]
03019
encode_token_end
[function]
[call site]
03020
encode_token_type
[function]
[call site]
03021
realloc
[call site]
03022
free_context
[function]
[call site]
03023
arith_compress_bound
[function]
[call site]
03024
free_context
[function]
[call site]
03025
compress
[function]
[call site]
03026
arith_encode
[function]
[call site]
03027
arith_compress_to
[function]
[call site]
03028
var_put_u32
[function]
[call site]
03029
rans_encode
[function]
[call site]
03030
rans_compress_to_4x16
[function]
[call site]
03031
var_put_u32
[function]
[call site]
03032
arith_encode
[function]
[call site]
03033
rans_encode
[function]
[call site]
03034
free_context
[function]
[call site]
03035
memcmp
[call site]
03036
free_context
[function]
[call site]
03037
free_context
[function]
[call site]
03038
pthread_mutex_lock
[call site]
03039
pthread_mutex_unlock
[call site]
03040
pthread_mutex_unlock
[call site]
03041
cram_compress_by_method
[function]
[call site]
03042
cram_compress_by_method
[function]
[call site]
03043
hts_log
[function]
[call site]
03044
cram_block_method2str
[function]
[call site]
03045
hts_log
[function]
[call site]
03046
pthread_mutex_lock
[call site]
03047
cram_compress_block2
[function]
[call site]
03048
cram_compress_block2
[function]
[call site]
03049
cram_compress_block2
[function]
[call site]
03050
cram_compress_block2
[function]
[call site]
03051
cram_compress_block2
[function]
[call site]
03052
cram_compress_block2
[function]
[call site]
03053
cram_compress_block2
[function]
[call site]
03054
cram_compress_block2
[function]
[call site]
03055
cram_compress_block2
[function]
[call site]
03056
cram_compress_block2
[function]
[call site]
03057
cram_compress_block2
[function]
[call site]
03058
cram_compress_block2
[function]
[call site]
03059
cram_compress_block2
[function]
[call site]
03060
cram_compress_block2
[function]
[call site]
03061
cram_compress_block2
[function]
[call site]
03062
realloc
[call site]
03063
cram_free_block
[function]
[call site]
03064
cram_encode_slice_header
[function]
[call site]
03065
cram_new_block
[function]
[call site]
03066
cram_free_block
[function]
[call site]
03067
__assert_fail
[call site]
03068
cram_encode_compression_header
[function]
[call site]
03069
cram_new_block
[function]
[call site]
03070
cram_new_block
[function]
[call site]
03071
itf8_put_blk
[function]
[call site]
03072
itf8_put_blk
[function]
[call site]
03073
itf8_put_blk
[function]
[call site]
03074
itf8_put_blk
[function]
[call site]
03075
itf8_put_blk
[function]
[call site]
03076
itf8_put_blk
[function]
[call site]
03077
kh_destroy_map
[function]
[call site]
03078
kh_init_map
[function]
[call site]
03079
calloc
[call site]
03080
kh_put_map
[function]
[call site]
03081
kh_resize_map
[function]
[call site]
03082
__ac_X31_hash_string
[function]
[call site]
03083
kh_put_map
[function]
[call site]
03084
kh_put_map
[function]
[call site]
03085
kh_put_map
[function]
[call site]
03086
kh_put_map
[function]
[call site]
03087
kh_put_map
[function]
[call site]
03088
kh_put_map
[function]
[call site]
03089
kh_put_map
[function]
[call site]
03090
kh_put_map
[function]
[call site]
03091
block_append
[function]
[call site]
03092
block_append_char
[function]
[call site]
03093
sub_idx
[function]
[call site]
03094
sub_idx
[function]
[call site]
03095
sub_idx
[function]
[call site]
03096
sub_idx
[function]
[call site]
03097
sub_idx
[function]
[call site]
03098
sub_idx
[function]
[call site]
03099
sub_idx
[function]
[call site]
03100
sub_idx
[function]
[call site]
03101
sub_idx
[function]
[call site]
03102
sub_idx
[function]
[call site]
03103
sub_idx
[function]
[call site]
03104
sub_idx
[function]
[call site]
03105
sub_idx
[function]
[call site]
03106
sub_idx
[function]
[call site]
03107
sub_idx
[function]
[call site]
03108
sub_idx
[function]
[call site]
03109
sub_idx
[function]
[call site]
03110
sub_idx
[function]
[call site]
03111
sub_idx
[function]
[call site]
03112
sub_idx
[function]
[call site]
03113
block_append
[function]
[call site]
03114
block_append
[function]
[call site]
03115
hts_log
[function]
[call site]
03116
block_append
[function]
[call site]
03117
block_append
[function]
[call site]
03118
block_append
[function]
[call site]
03119
hts_log
[function]
[call site]
03120
cram_free_block
[function]
[call site]
03121
cram_ref_decr
[function]
[call site]
03122
cram_ref_decr
[function]
[call site]
03123
cram_flush_container2
[function]
[call site]
03124
htell
[function]
[call site]
03125
cram_write_container
[function]
[call site]
03126
itf8_put
[function]
[call site]
03127
crc32
[call site]
03128
hwrite
[function]
[call site]
03129
htell
[function]
[call site]
03130
cram_write_block
[function]
[call site]
03131
__assert_fail
[call site]
03132
hputc
[function]
[call site]
03133
hputc2
[function]
[call site]
03134
flush_buffer
[function]
[call site]
03135
hputc
[function]
[call site]
03136
hwrite
[function]
[call site]
03137
hwrite
[function]
[call site]
03138
hwrite
[function]
[call site]
03139
__assert_fail
[call site]
03140
crc32
[call site]
03141
int32_encode
[function]
[call site]
03142
hwrite
[function]
[call site]
03143
htell
[function]
[call site]
03144
cram_write_block
[function]
[call site]
03145
cram_write_block
[function]
[call site]
03146
htell
[function]
[call site]
03147
cram_index_slice
[function]
[call site]
03148
hts_log
[function]
[call site]
03149
cram_index_build_multiref
[function]
[call site]
03150
cram_decode_slice
[function]
[call site]
03151
cram_dependent_data_series
[function]
[call site]
03152
cram_uncompress_block
[function]
[call site]
03153
cram_uncompress_block
[function]
[call site]
03154
cram_codec_to_id
[function]
[call site]
03155
cram_codec_to_id
[function]
[call site]
03156
cram_codec_to_id
[function]
[call site]
03157
hts_log
[function]
[call site]
03158
cram_uncompress_block
[function]
[call site]
03159
cram_codec_to_id
[function]
[call site]
03160
cram_uncompress_block
[function]
[call site]
03161
cram_codec_to_id
[function]
[call site]
03162
cram_codec_to_id
[function]
[call site]
03163
cram_decode_estimate_sizes
[function]
[call site]
03164
cram_codec_to_id
[function]
[call site]
03165
cram_ds_unique
[function]
[call site]
03166
cram_codec_to_id
[function]
[call site]
03167
cram_get_block_by_id
[function]
[call site]
03168
cram_codec_to_id
[function]
[call site]
03169
cram_ds_unique
[function]
[call site]
03170
cram_get_block_by_id
[function]
[call site]
03171
block_resize_exact
[function]
[call site]
03172
block_resize_exact
[function]
[call site]
03173
block_resize_exact
[function]
[call site]
03174
strcmp
[call site]
03175
hts_log
[function]
[call site]
03176
cram_get_block_by_id
[function]
[call site]
03177
cram_uncompress_block
[function]
[call site]
03178
hts_log
[function]
[call site]
03179
cram_get_ref
[function]
[call site]
03180
hts_log
[function]
[call site]
03181
pthread_mutex_lock
[call site]
03182
pthread_mutex_lock
[call site]
03183
pthread_mutex_unlock
[call site]
03184
hts_log
[function]
[call site]
03185
memcmp
[call site]
03186
hts_log
[function]
[call site]
03187
hts_log
[function]
[call site]
03188
hts_md5_init
[function]
[call site]
03189
hts_md5_update
[function]
[call site]
03190
hts_md5_final
[function]
[call site]
03191
hts_md5_destroy
[function]
[call site]
03192
cram_get_block_by_id
[function]
[call site]
03193
hts_md5_init
[function]
[call site]
03194
hts_md5_update
[function]
[call site]
03195
hts_md5_final
[function]
[call site]
03196
hts_md5_destroy
[function]
[call site]
03197
sam_hdr_tid2name
[function]
[call site]
03198
hts_log
[function]
[call site]
03199
md5_print
[function]
[call site]
03200
hts_log
[function]
[call site]
03201
md5_print
[function]
[call site]
03202
hts_log
[function]
[call site]
03203
sam_hdr_find_tag_id
[function]
[call site]
03204
sam_hdr_fill_hrecs
[function]
[call site]
03205
sam_hrecs_find_type_id
[function]
[call site]
03206
sam_hrecs_find_key
[function]
[call site]
03207
kputsn
[function]
[call site]
03208
hts_log
[function]
[call site]
03209
hts_log
[function]
[call site]
03210
ks_free
[function]
[call site]
03211
pthread_mutex_lock
[call site]
03212
calloc
[call site]
03213
pthread_mutex_unlock
[call site]
03214
pthread_mutex_unlock
[call site]
03215
pthread_mutex_lock
[call site]
03216
cram_get_ref
[function]
[call site]
03217
pthread_mutex_lock
[call site]
03218
pthread_mutex_unlock
[call site]
03219
pthread_mutex_lock
[call site]
03220
pthread_mutex_unlock
[call site]
03221
cram_ref_decr
[function]
[call site]
03222
pthread_mutex_lock
[call site]
03223
pthread_mutex_lock
[call site]
03224
pthread_mutex_unlock
[call site]
03225
pthread_mutex_unlock
[call site]
03226
hts_log
[function]
[call site]
03227
hts_log
[function]
[call site]
03228
pthread_mutex_lock
[call site]
03229
pthread_mutex_unlock
[call site]
03230
cram_decode_tlen
[function]
[call site]
03231
cram_decode_tlen
[function]
[call site]
03232
cram_decode_tlen
[function]
[call site]
03233
cram_decode_aux_1_0
[function]
[call site]
03234
map_find
[function]
[call site]
03235
block_append
[function]
[call site]
03236
cram_decode_aux
[function]
[call site]
03237
strlen
[call site]
03238
sam_hdr_line_name
[function]
[call site]
03239
sam_hdr_fill_hrecs
[function]
[call site]
03240
hts_log
[function]
[call site]
03241
hts_log
[function]
[call site]
03242
hts_log
[function]
[call site]
03243
strlen
[call site]
03244
block_append
[function]
[call site]
03245
block_append
[function]
[call site]
03246
block_append_char
[function]
[call site]
03247
block_append
[function]
[call site]
03248
map_find
[function]
[call site]
03249
block_append
[function]
[call site]
03250
block_grow
[function]
[call site]
03251
block_grow
[function]
[call site]
03252
hts_log
[function]
[call site]
03253
cram_decode_seq
[function]
[call site]
03254
block_append
[function]
[call site]
03255
realloc
[call site]
03256
hts_log
[function]
[call site]
03257
hts_log
[function]
[call site]
03258
add_md_char
[function]
[call site]
03259
block_append_uint
[function]
[call site]
03260
block_grow
[function]
[call site]
03261
append_uint32
[function]
[call site]
03262
block_append_char
[function]
[call site]
03263
block_append_uint
[function]
[call site]
03264
add_md_char
[function]
[call site]
03265
block_append_uint
[function]
[call site]
03266
block_append_char
[function]
[call site]
03267
block_append
[function]
[call site]
03268
block_append_char
[function]
[call site]
03269
block_append
[function]
[call site]
03270
block_append_uint
[function]
[call site]
03271
block_append_uint
[function]
[call site]
03272
block_append_uint
[function]
[call site]
03273
block_append_char
[function]
[call site]
03274
block_append_uint
[function]
[call site]
03275
block_append_char
[function]
[call site]
03276
hts_log
[function]
[call site]
03277
memchr
[call site]
03278
add_md_char
[function]
[call site]
03279
realloc
[call site]
03280
block_append_uint
[function]
[call site]
03281
realloc
[call site]
03282
block_append_char
[function]
[call site]
03283
block_append
[function]
[call site]
03284
hts_log
[function]
[call site]
03285
pthread_mutex_lock
[call site]
03286
cram_ref_decr
[function]
[call site]
03287
cram_ref_decr
[function]
[call site]
03288
pthread_mutex_unlock
[call site]
03289
cram_decode_slice_xref
[function]
[call site]
03290
hts_log
[function]
[call site]
03291
block_resize_exact
[function]
[call site]
03292
block_resize_exact
[function]
[call site]
03293
block_resize_exact
[function]
[call site]
03294
block_resize_exact
[function]
[call site]
03295
pthread_mutex_lock
[call site]
03296
cram_ref_decr
[function]
[call site]
03297
pthread_mutex_unlock
[call site]
03298
hts_log
[function]
[call site]
03299
strlen
[call site]
03300
bgzf_write
[function]
[call site]
03301
hwrite
[function]
[call site]
03302
__assert_fail
[call site]
03303
lazy_flush
[function]
[call site]
03304
mt_queue
[function]
[call site]
03305
bgzf_flush
[function]
[call site]
03306
strlen
[call site]
03307
bgzf_write
[function]
[call site]
03308
sprintf
[call site]
03309
bgzf_write
[function]
[call site]
03310
__errno_location
[call site]
03311
hts_tpool_dispatch2
[function]
[call site]
03312
hts_tpool_dispatch3
[function]
[call site]
03313
cram_flush_thread
[function]
[call site]
03314
cram_encode_container
[function]
[call site]
03315
hts_log
[function]
[call site]
03316
__errno_location
[call site]
03317
cram_flush_result
[function]
[call site]
03318
hts_tpool_next_result
[function]
[call site]
03319
hts_tpool_next_result_locked
[function]
[call site]
03320
hts_tpool_result_data
[function]
[call site]
03321
hts_tpool_delete_result
[function]
[call site]
03322
cram_flush_container2
[function]
[call site]
03323
cram_free_slice
[function]
[call site]
03324
cram_free_slice
[function]
[call site]
03325
cram_free_container
[function]
[call site]
03326
hts_tpool_delete_result
[function]
[call site]
03327
cram_free_container
[function]
[call site]
03328
usleep
[call site]
03329
cram_drain_rqueue
[function]
[call site]
03330
hts_tpool_process_flush
[function]
[call site]
03331
cram_flush_result
[function]
[call site]
03332
pthread_mutex_destroy
[call site]
03333
pthread_mutex_destroy
[call site]
03334
pthread_mutex_destroy
[call site]
03335
hts_tpool_process_destroy
[function]
[call site]
03336
cram_write_eof_block
[function]
[call site]
03337
cram_encode_compression_header
[function]
[call site]
03338
cram_write_container
[function]
[call site]
03339
cram_write_block
[function]
[call site]
03340
cram_close
[function]
[call site]
03341
bam_destroy1
[function]
[call site]
03342
bam_get_mempolicy
[function]
[call site]
03343
bam_get_mempolicy
[function]
[call site]
03344
bam_get_mempolicy
[function]
[call site]
03345
hclose
[function]
[call site]
03346
cram_free_file_def
[function]
[call site]
03347
sam_hdr_destroy
[function]
[call site]
03348
cram_free_container
[function]
[call site]
03349
cram_free_container
[function]
[call site]
03350
refs_free
[function]
[call site]
03351
kh_destroy_m_metrics
[function]
[call site]
03352
cram_index_free
[function]
[call site]
03353
cram_index_free_recurse
[function]
[call site]
03354
cram_index_free_recurse
[function]
[call site]
03355
hts_tpool_destroy
[function]
[call site]
03356
bgzf_close
[function]
[call site]
03357
cram_free_block
[function]
[call site]
03358
kh_destroy_map
[function]
[call site]
03359
cram_free_block
[function]
[call site]
03360
sam_state_destroy
[function]
[call site]
03361
fastq_state_destroy
[function]
[call site]
03362
kh_destroy_tag
[function]
[call site]
03363
ks_free
[function]
[call site]
03364
ks_free
[function]
[call site]
03365
ks_free
[function]
[call site]
03366
bgzf_close
[function]
[call site]
03367
hclose
[function]
[call site]
03368
__errno_location
[call site]
03369
sam_hdr_destroy
[function]
[call site]
03370
hts_idx_destroy
[function]
[call site]
03371
cram_index_free
[function]
[call site]
03372
kh_destroy_bin
[function]
[call site]
03373
hts_filter_free
[function]
[call site]
03374
__errno_location
[call site]
03375
abort
[call site]
03376
sam_hdr_count_lines
[function]
[call site]
03377
sam_hdr_fill_hrecs
[function]
[call site]
03378
sam_hrecs_find_type_id
[function]
[call site]
03379
sam_hdr_write
[function]
[call site]
03380
__errno_location
[call site]
03381
bam_hdr_write
[function]
[call site]
03382
sam_hrecs_rebuild_text
[function]
[call site]
03383
hts_log
[function]
[call site]
03384
hts_log
[function]
[call site]
03385
hts_log
[function]
[call site]
03386
hts_log
[function]
[call site]
03387
hts_log
[function]
[call site]
03388
hts_log
[function]
[call site]
03389
bgzf_write
[function]
[call site]
03390
ed_swap_4
[function]
[call site]
03391
bgzf_write
[function]
[call site]
03392
bgzf_write
[function]
[call site]
03393
ed_swap_4
[function]
[call site]
03394
bgzf_write
[function]
[call site]
03395
bgzf_write
[function]
[call site]
03396
bgzf_write
[function]
[call site]
03397
bgzf_write
[function]
[call site]
03398
ed_swap_4
[function]
[call site]
03399
bgzf_write
[function]
[call site]
03400
bgzf_write
[function]
[call site]
03401
bgzf_write
[function]
[call site]
03402
ed_swap_4
[function]
[call site]
03403
bgzf_write
[function]
[call site]
03404
bgzf_write
[function]
[call site]
03405
bgzf_flush
[function]
[call site]
03406
cram_set_header2
[function]
[call site]
03407
sam_hdr_destroy
[function]
[call site]
03408
sam_hdr_dup
[function]
[call site]
03409
refs_from_header
[function]
[call site]
03410
cram_load_reference
[function]
[call site]
03411
cram_write_SAM_hdr
[function]
[call site]
03412
cram_write_file_def
[function]
[call site]
03413
hwrite
[function]
[call site]
03414
sam_hrecs_find_rg
[function]
[call site]
03415
sam_hdr_add_line
[function]
[call site]
03416
sam_hdr_fill_hrecs
[function]
[call site]
03417
sam_hrecs_vadd
[function]
[call site]
03418
rebuild_target_arrays
[function]
[call site]
03419
redact_header_text
[function]
[call site]
03420
refs_from_header
[function]
[call site]
03421
refs2id
[function]
[call site]
03422
sam_hrecs_find_type_id
[function]
[call site]
03423
sam_hrecs_find_key
[function]
[call site]
03424
cram_get_ref
[function]
[call site]
03425
hts_log
[function]
[call site]
03426
hts_log
[function]
[call site]
03427
hts_log
[function]
[call site]
03428
pthread_mutex_lock
[call site]
03429
pthread_mutex_unlock
[call site]
03430
hts_md5_init
[function]
[call site]
03431
hts_md5_update
[function]
[call site]
03432
hts_md5_final
[function]
[call site]
03433
hts_md5_destroy
[function]
[call site]
03434
cram_ref_decr
[function]
[call site]
03435
hts_md5_hex
[function]
[call site]
03436
sam_hdr_update_line
[function]
[call site]
03437
sam_hdr_fill_hrecs
[function]
[call site]
03438
sam_hrecs_find_type_id
[function]
[call site]
03439
check_for_name_update
[function]
[call site]
03440
TYPEKEY
[function]
[call site]
03441
TYPEKEY
[function]
[call site]
03442
TYPEKEY
[function]
[call site]
03443
sam_hrecs_find_key
[function]
[call site]
03444
kh_get_m_s2i
[function]
[call site]
03445
hts_log
[function]
[call site]
03446
TYPEKEY
[function]
[call site]
03447
hts_log
[function]
[call site]
03448
sam_hrecs_vupdate
[function]
[call site]
03449
kh_get_m_s2i
[function]
[call site]
03450
sam_hrecs_find_key
[function]
[call site]
03451
__assert_fail
[call site]
03452
__assert_fail
[call site]
03453
__assert_fail
[call site]
03454
kh_del_m_s2i
[function]
[call site]
03455
kh_put_m_s2i
[function]
[call site]
03456
hts_log
[function]
[call site]
03457
TYPEKEY
[function]
[call site]
03458
sam_hrecs_update_hashes
[function]
[call site]
03459
rebuild_target_arrays
[function]
[call site]
03460
redact_header_text
[function]
[call site]
03461
full_path
[function]
[call site]
03462
strlen
[call site]
03463
hisremote
[function]
[call site]
03464
hts_log
[function]
[call site]
03465
strncpy
[call site]
03466
toupper_c
[function]
[call site]
03467
strncpy
[call site]
03468
getcwd
[call site]
03469
strlen
[call site]
03470
strncpy
[call site]
03471
sprintf
[call site]
03472
sam_hdr_update_line
[function]
[call site]
03473
sam_hdr_length
[function]
[call site]
03474
sam_hdr_rebuild
[function]
[call site]
03475
rebuild_target_arrays
[function]
[call site]
03476
hts_log
[function]
[call site]
03477
sam_hdr_link_pg
[function]
[call site]
03478
sam_hdr_fill_hrecs
[function]
[call site]
03479
realloc
[call site]
03480
calloc
[call site]
03481
__assert_fail
[call site]
03482
kh_get_m_s2i
[function]
[call site]
03483
hts_log
[function]
[call site]
03484
redact_header_text
[function]
[call site]
03485
sam_hrecs_rebuild_text
[function]
[call site]
03486
ks_free
[function]
[call site]
03487
hts_log
[function]
[call site]
03488
ks_len
[function]
[call site]
03489
ks_release
[function]
[call site]
03490
hts_log
[function]
[call site]
03491
int32_encode
[function]
[call site]
03492
sam_hdr_str
[function]
[call site]
03493
sam_hdr_rebuild
[function]
[call site]
03494
hwrite
[function]
[call site]
03495
cram_new_block
[function]
[call site]
03496
cram_new_container
[function]
[call site]
03497
calloc
[call site]
03498
calloc
[call site]
03499
cram_new_compression_header
[function]
[call site]
03500
calloc
[call site]
03501
cram_new_block
[function]
[call site]
03502
kh_init_m_s2i
[function]
[call site]
03503
cram_free_block
[function]
[call site]
03504
string_pool_create
[function]
[call site]
03505
kh_destroy_m_s2i
[function]
[call site]
03506
cram_free_block
[function]
[call site]
03507
cram_stats_create
[function]
[call site]
03508
calloc
[call site]
03509
kh_init_m_tagmap
[function]
[call site]
03510
cram_free_block
[function]
[call site]
03511
cram_free_container
[function]
[call site]
03512
int32_put_blk
[function]
[call site]
03513
block_append
[function]
[call site]
03514
sam_hdr_str
[function]
[call site]
03515
block_append
[function]
[call site]
03516
cram_compress_block
[function]
[call site]
03517
cram_compress_block2
[function]
[call site]
03518
cram_free_block
[function]
[call site]
03519
cram_free_container
[function]
[call site]
03520
calloc
[call site]
03521
cram_free_block
[function]
[call site]
03522
cram_free_container
[function]
[call site]
03523
block_append
[function]
[call site]
03524
cram_write_container
[function]
[call site]
03525
cram_free_block
[function]
[call site]
03526
cram_free_container
[function]
[call site]
03527
cram_write_block
[function]
[call site]
03528
cram_free_block
[function]
[call site]
03529
cram_free_container
[function]
[call site]
03530
block_resize
[function]
[call site]
03531
cram_write_block
[function]
[call site]
03532
cram_free_block
[function]
[call site]
03533
cram_free_container
[function]
[call site]
03534
cram_free_block
[function]
[call site]
03535
cram_free_container
[function]
[call site]
03536
hflush
[function]
[call site]
03537
sam_hrecs_rebuild_text
[function]
[call site]
03538
strstr
[call site]
03539
bgzf_write
[function]
[call site]
03540
hwrite
[function]
[call site]
03541
kputsn
[function]
[call site]
03542
kputs
[function]
[call site]
03543
kputsn
[function]
[call site]
03544
kputw
[function]
[call site]
03545
kputc
[function]
[call site]
03546
bgzf_write
[function]
[call site]
03547
hwrite
[function]
[call site]
03548
bgzf_flush
[function]
[call site]
03549
hflush
[function]
[call site]
03550
__errno_location
[call site]
03551
sam_hdr_destroy
[function]
[call site]
03552
hts_close_or_abort
[function]
[call site]
03553
bam_init1
[function]
[call site]
03554
calloc
[call site]
03555
sam_hdr_destroy
[function]
[call site]
03556
hts_close_or_abort
[function]
[call site]
03557
sam_read1
[function]
[call site]
03558
sam_read1_bam
[function]
[call site]
03559
bam_read1
[function]
[call site]
03560
bgzf_read
[function]
[call site]
03561
ed_swap_4p
[function]
[call site]
03562
bgzf_read
[function]
[call site]
03563
ed_swap_4p
[function]
[call site]
03564
realloc_bam_data
[function]
[call site]
03565
sam_realloc_bam_data
[function]
[call site]
03566
__errno_location
[call site]
03567
bam_get_mempolicy
[function]
[call site]
03568
realloc
[call site]
03569
bam_get_mempolicy
[function]
[call site]
03570
bgzf_read
[function]
[call site]
03571
fixup_missing_qname_nul
[function]
[call site]
03572
realloc_bam_data
[function]
[call site]
03573
bgzf_read
[function]
[call site]
03574
swap_data
[function]
[call site]
03575
ed_swap_4p
[function]
[call site]
03576
bam_tag2cigar
[function]
[call site]
03577
bam_aux_get
[function]
[call site]
03578
__errno_location
[call site]
03579
le_to_u32
[function]
[call site]
03580
possibly_expand_bam_data
[function]
[call site]
03581
__errno_location
[call site]
03582
sam_realloc_bam_data
[function]
[call site]
03583
bam_endpos
[function]
[call site]
03584
bam_cigar2rlen
[function]
[call site]
03585
hts_reg2bin
[function]
[call site]
03586
hts_log
[function]
[call site]
03587
bam_cigar2rqlens
[function]
[call site]
03588
hts_reg2bin
[function]
[call site]
03589
hts_log
[function]
[call site]
03590
__errno_location
[call site]
03591
sam_read1_cram
[function]
[call site]
03592
cram_get_bam_seq
[function]
[call site]
03593
cram_get_seq
[function]
[call site]
03594
cram_next_slice
[function]
[call site]
03595
cram_first_slice
[function]
[call site]
03596
cram_free_container
[function]
[call site]
03597
cram_read_container
[function]
[call site]
03598
cram_seek
[function]
[call site]
03599
cram_free_container
[function]
[call site]
03600
cram_read_container
[function]
[call site]
03601
cram_read_block
[function]
[call site]
03602
cram_decode_compression_header
[function]
[call site]
03603
calloc
[call site]
03604
cram_uncompress_block
[function]
[call site]
03605
kh_init_map
[function]
[call site]
03606
cram_free_compression_header
[function]
[call site]
03607
cram_free_compression_header
[function]
[call site]
03608
kh_put_map
[function]
[call site]
03609
cram_free_compression_header
[function]
[call site]
03610
kh_put_map
[function]
[call site]
03611
cram_free_compression_header
[function]
[call site]
03612
kh_put_map
[function]
[call site]
03613
cram_free_compression_header
[function]
[call site]
03614
kh_put_map
[function]
[call site]
03615
cram_free_compression_header
[function]
[call site]
03616
cram_free_compression_header
[function]
[call site]
03617
kh_put_map
[function]
[call site]
03618
cram_free_compression_header
[function]
[call site]
03619
cram_decode_TD
[function]
[call site]
03620
cram_new_block
[function]
[call site]
03621
hts_log
[function]
[call site]
03622
cram_free_block
[function]
[call site]
03623
cram_free_block
[function]
[call site]
03624
cram_free_block
[function]
[call site]
03625
block_append
[function]
[call site]
03626
block_append_char
[function]
[call site]
03627
calloc
[call site]
03628
cram_free_block
[function]
[call site]
03629
cram_free_block
[function]
[call site]
03630
cram_free_compression_header
[function]
[call site]
03631
kh_put_map
[function]
[call site]
03632
cram_free_compression_header
[function]
[call site]
03633
cram_free_compression_header
[function]
[call site]
03634
cram_free_compression_header
[function]
[call site]
03635
cram_free_compression_header
[function]
[call site]
03636
hts_log
[function]
[call site]
03637
hts_log
[function]
[call site]
03638
cram_decoder_init
[function]
[call site]
03639
cram_encoding2str
[function]
[call site]
03640
hts_log
[function]
[call site]
03641
cram_free_compression_header
[function]
[call site]
03642
cram_free_compression_header
[function]
[call site]
03643
cram_free_compression_header
[function]
[call site]
03644
cram_free_compression_header
[function]
[call site]
03645
cram_decoder_init
[function]
[call site]
03646
cram_free_compression_header
[function]
[call site]
03647
cram_free_compression_header
[function]
[call site]
03648
sam_hrecs_sort_order
[function]
[call site]
03649
TYPEKEY
[function]
[call site]
03650
strcmp
[call site]
03651
strcmp
[call site]
03652
strcmp
[call site]
03653
strcmp
[call site]
03654
hts_log
[function]
[call site]
03655
pthread_mutex_lock
[call site]
03656
pthread_mutex_unlock
[call site]
03657
cram_free_slice
[function]
[call site]
03658
cram_free_container
[function]
[call site]
03659
cram_read_container
[function]
[call site]
03660
cram_free_container
[function]
[call site]
03661
cram_free_container
[function]
[call site]
03662
cram_free_container
[function]
[call site]
03663
cram_seek
[function]
[call site]
03664
cram_free_container
[function]
[call site]
03665
cram_read_block
[function]
[call site]
03666
cram_decode_compression_header
[function]
[call site]
03667
sam_hrecs_sort_order
[function]
[call site]
03668
pthread_mutex_lock
[call site]
03669
pthread_mutex_unlock
[call site]
03670
cram_read_slice
[function]
[call site]
03671
cram_read_block
[function]
[call site]
03672
calloc
[call site]
03673
cram_decode_slice_header
[function]
[call site]
03674
cram_uncompress_block
[function]
[call site]
03675
calloc
[call site]
03676
hts_log
[function]
[call site]
03677
cram_content_type2str
[function]
[call site]
03678
hts_log
[function]
[call site]
03679
hts_log
[function]
[call site]
03680
calloc
[call site]
03681
cram_read_block
[function]
[call site]
03682
calloc
[call site]
03683
cram_new_block
[function]
[call site]
03684
cram_new_block
[function]
[call site]
03685
cram_new_block
[function]
[call site]
03686
cram_new_block
[function]
[call site]
03687
cram_new_block
[function]
[call site]
03688
cram_new_block
[function]
[call site]
03689
cram_free_block
[function]
[call site]
03690
cram_free_slice
[function]
[call site]
03691
cram_free_slice
[function]
[call site]
03692
cram_free_slice
[function]
[call site]
03693
cram_free_slice
[function]
[call site]
03694
cram_decode_slice_mt
[function]
[call site]
03695
cram_decode_slice
[function]
[call site]
03696
hts_tpool_process_sz
[function]
[call site]
03697
__errno_location
[call site]
03698
__errno_location
[call site]
03699
hts_tpool_dispatch2
[function]
[call site]
03700
cram_decode_slice_thread
[function]
[call site]
03701
cram_decode_slice
[function]
[call site]
03702
__errno_location
[call site]
03703
hts_log
[function]
[call site]
03704
cram_free_slice
[function]
[call site]
03705
hts_tpool_process_len
[function]
[call site]
03706
hts_tpool_process_qsize
[function]
[call site]
03707
hts_tpool_process_empty
[function]
[call site]
03708
hts_tpool_next_result_wait
[function]
[call site]
03709
hts_tpool_result_data
[function]
[call site]
03710
hts_log
[function]
[call site]
03711
hts_tpool_result_data
[function]
[call site]
03712
hts_log
[function]
[call site]
03713
hts_tpool_delete_result
[function]
[call site]
03714
hts_tpool_delete_result
[function]
[call site]
03715
cram_free_slice
[function]
[call site]
03716
cram_to_bam
[function]
[call site]
03717
strlen
[call site]
03718
append_uint64
[function]
[call site]
03719
append_uint32
[function]
[call site]
03720
append_uint32
[function]
[call site]
03721
append_sub32
[function]
[call site]
03722
append_uint32
[function]
[call site]
03723
append_sub32
[function]
[call site]
03724
append_uint64
[function]
[call site]
03725
bam_set1
[function]
[call site]
03726
bam_cigar2rqlens
[function]
[call site]
03727
hts_log
[function]
[call site]
03728
__errno_location
[call site]
03729
hts_log
[function]
[call site]
03730
__errno_location
[call site]
03731
hts_log
[function]
[call site]
03732
__errno_location
[call site]
03733
subtract_check_underflow
[function]
[call site]
03734
subtract_check_underflow
[function]
[call site]
03735
subtract_check_underflow
[function]
[call site]
03736
subtract_check_underflow
[function]
[call site]
03737
subtract_check_underflow
[function]
[call site]
03738
realloc_bam_data
[function]
[call site]
03739
hts_reg2bin
[function]
[call site]
03740
strncpy
[call site]
03741
cram_eof
[function]
[call site]
03742
bam_tag2cigar
[function]
[call site]
03743
sam_read1_sam
[function]
[call site]
03744
sam_parse1
[function]
[call site]
03745
strchr
[call site]
03746
hts_log
[function]
[call site]
03747
hts_log
[function]
[call site]
03748
possibly_expand_bam_data
[function]
[call site]
03749
parse_sam_flag
[function]
[call site]
03750
hts_str2uint
[function]
[call site]
03751
strtoul
[call site]
03752
strchr
[call site]
03753
hts_log
[function]
[call site]
03754
bam_name2id
[function]
[call site]
03755
sam_hdr_name2tid
[function]
[call site]
03756
sam_hdr_fill_hrecs
[function]
[call site]
03757
kh_get_m_s2i
[function]
[call site]
03758
hts_log
[function]
[call site]
03759
hts_strprint
[function]
[call site]
03760
isprint_c
[function]
[call site]
03761
__ctype_b_loc
[call site]
03762
hts_log
[function]
[call site]
03763
hts_str2uint
[function]
[call site]
03764
hts_log
[function]
[call site]
03765
hts_str2uint
[function]
[call site]
03766
bam_parse_cigar
[function]
[call site]
03767
hts_log
[function]
[call site]
03768
read_ncigar
[function]
[call site]
03769
isdigit_c
[function]
[call site]
03770
hts_log
[function]
[call site]
03771
hts_log
[function]
[call site]
03772
possibly_expand_bam_data
[function]
[call site]
03773
hts_log
[function]
[call site]
03774
parse_cigar
[function]
[call site]
03775
hts_str2uint
[function]
[call site]
03776
hts_log
[function]
[call site]
03777
hts_log
[function]
[call site]
03778
hts_log
[function]
[call site]
03779
bam_cigar2rlen
[function]
[call site]
03780
hts_log
[function]
[call site]
03781
strchr
[call site]
03782
hts_log
[function]
[call site]
03783
hts_reg2bin
[function]
[call site]
03784
strchr
[call site]
03785
strcmp
[call site]
03786
strcmp
[call site]
03787
bam_name2id
[function]
[call site]
03788
hts_log
[function]
[call site]
03789
hts_strprint
[function]
[call site]
03790
hts_log
[function]
[call site]
03791
hts_str2uint
[function]
[call site]
03792
hts_log
[function]
[call site]
03793
hts_str2int
[function]
[call site]
03794
strchr
[call site]
03795
strcmp
[call site]
03796
hts_log
[function]
[call site]
03797
bam_cigar2qlen
[function]
[call site]
03798
hts_log
[function]
[call site]
03799
possibly_expand_bam_data
[function]
[call site]
03800
possibly_expand_bam_data
[function]
[call site]
03801
hts_log
[function]
[call site]
03802
hts_log
[function]
[call site]
03803
aux_parse
[function]
[call site]
03804
hts_log
[function]
[call site]
03805
isspace_c
[function]
[call site]
03806
hts_log
[function]
[call site]
03807
isspace_c
[function]
[call site]
03808
isspace_c
[function]
[call site]
03809
kh_get_tag
[function]
[call site]
03810
possibly_expand_bam_data
[function]
[call site]
03811
isspace_c
[function]
[call site]
03812
hts_log
[function]
[call site]
03813
possibly_expand_bam_data
[function]
[call site]
03814
hts_str2int
[function]
[call site]
03815
i16_to_le
[function]
[call site]
03816
u16_to_le
[function]
[call site]
03817
i32_to_le
[function]
[call site]
03818
u32_to_le
[function]
[call site]
03819
hts_str2uint
[function]
[call site]
03820
u16_to_le
[function]
[call site]
03821
u32_to_le
[function]
[call site]
03822
strtod
[call site]
03823
float_to_le
[function]
[call site]
03824
u32_to_le
[function]
[call site]
03825
strtod
[call site]
03826
double_to_le
[function]
[call site]
03827
u64_to_le
[function]
[call site]
03828
strchr
[call site]
03829
strlen
[call site]
03830
isspace_c
[function]
[call site]
03831
hts_log
[function]
[call site]
03832
possibly_expand_bam_data
[function]
[call site]
03833
isspace_c
[function]
[call site]
03834
hts_log
[function]
[call site]
03835
sam_parse_B_vals
[function]
[call site]
03836
aux_type2size
[function]
[call site]
03837
hts_log
[function]
[call site]
03838
possibly_expand_bam_data
[function]
[call site]
03839
hts_log
[function]
[call site]
03840
i32_to_le
[function]
[call site]
03841
hts_str2int
[function]
[call site]
03842
hts_str2uint
[function]
[call site]
03843
hts_str2int
[function]
[call site]
03844
i16_to_le
[function]
[call site]
03845
hts_str2uint
[function]
[call site]
03846
u16_to_le
[function]
[call site]
03847
hts_str2int
[function]
[call site]
03848
i32_to_le
[function]
[call site]
03849
hts_str2uint
[function]
[call site]
03850
u32_to_le
[function]
[call site]
03851
strtod
[call site]
03852
float_to_le
[function]
[call site]
03853
hts_log
[function]
[call site]
03854
hts_str2int
[function]
[call site]
03855
sam_parse_B_vals
[function]
[call site]
03856
sam_parse_B_vals
[function]
[call site]
03857
sam_parse_B_vals
[function]
[call site]
03858
sam_parse_B_vals
[function]
[call site]
03859
sam_parse_B_vals
[function]
[call site]
03860
sam_parse_B_vals
[function]
[call site]
03861
hts_log
[function]
[call site]
03862
isspace_c
[function]
[call site]
03863
hts_strprint
[function]
[call site]
03864
hts_log
[function]
[call site]
03865
isspace_c
[function]
[call site]
03866
hts_log
[function]
[call site]
03867
bam_tag2cigar
[function]
[call site]
03868
sam_state_destroy
[function]
[call site]
03869
__errno_location
[call site]
03870
bgzf_seek
[function]
[call site]
03871
bgzf_seek_common
[function]
[call site]
03872
sam_hdr_fill_hrecs
[function]
[call site]
03873
pthread_create
[call site]
03874
sam_dispatcher_read
[function]
[call site]
03875
ks_resize
[function]
[call site]
03876
pthread_mutex_lock
[call site]
03877
pthread_cond_signal
[call site]
03878
pthread_mutex_unlock
[call site]
03879
hts_tpool_process_shutdown
[function]
[call site]
03880
pthread_mutex_unlock
[call site]
03881
pthread_mutex_lock
[call site]
03882
pthread_mutex_unlock
[call site]
03883
calloc
[call site]
03884
realloc
[call site]
03885
bgzf_read
[function]
[call site]
03886
hread
[function]
[call site]
03887
__errno_location
[call site]
03888
sam_state_err
[function]
[call site]
03889
realloc
[call site]
03890
__assert_fail
[call site]
03891
__assert_fail
[call site]
03892
ks_resize
[function]
[call site]
03893
hts_tpool_dispatch3
[function]
[call site]
03894
sam_parse_worker
[function]
[call site]
03895
pthread_mutex_lock
[call site]
03896
pthread_mutex_unlock
[call site]
03897
calloc
[call site]
03898
calloc
[call site]
03899
sam_state_err
[function]
[call site]
03900
sam_state_err
[function]
[call site]
03901
realloc
[call site]
03902
sam_state_err
[function]
[call site]
03903
sam_parse1
[function]
[call site]
03904
__errno_location
[call site]
03905
sam_state_err
[function]
[call site]
03906
cleanup_sp_lines
[function]
[call site]
03907
__assert_fail
[call site]
03908
sam_free_sp_bams
[function]
[call site]
03909
pthread_mutex_lock
[call site]
03910
pthread_mutex_unlock
[call site]
03911
sam_free_sp_bams
[function]
[call site]
03912
pthread_mutex_lock
[call site]
03913
pthread_mutex_unlock
[call site]
03914
sam_parse_eof
[function]
[call site]
03915
pthread_mutex_lock
[call site]
03916
pthread_cond_wait
[call site]
03917
pthread_cond_signal
[call site]
03918
pthread_mutex_unlock
[call site]
03919
hts_tpool_process_shutdown
[function]
[call site]
03920
pthread_mutex_unlock
[call site]
03921
pthread_mutex_lock
[call site]
03922
pthread_cond_signal
[call site]
03923
pthread_mutex_unlock
[call site]
03924
pthread_mutex_lock
[call site]
03925
pthread_mutex_unlock
[call site]
03926
__errno_location
[call site]
03927
sam_state_err
[function]
[call site]
03928
hts_tpool_process_shutdown
[function]
[call site]
03929
hts_log
[function]
[call site]
03930
__errno_location
[call site]
03931
hts_tpool_next_result_wait
[function]
[call site]
03932
hts_tpool_result_data
[function]
[call site]
03933
hts_tpool_delete_result
[function]
[call site]
03934
bam_copy1
[function]
[call site]
03935
realloc_bam_data
[function]
[call site]
03936
pthread_mutex_lock
[call site]
03937
pthread_mutex_unlock
[call site]
03938
hts_getline
[function]
[call site]
03939
sam_parse1
[function]
[call site]
03940
hts_log
[function]
[call site]
03941
fastq_state_init
[function]
[call site]
03942
fastq_parse1
[function]
[call site]
03943
hts_getline
[function]
[call site]
03944
strpbrk
[call site]
03945
isspace_c
[function]
[call site]
03946
isspace_c
[function]
[call site]
03947
hts_getline
[function]
[call site]
03948
kputsn
[function]
[call site]
03949
hts_getline
[function]
[call site]
03950
kputsn
[function]
[call site]
03951
isdigit_c
[function]
[call site]
03952
bam_set1
[function]
[call site]
03953
isdigit_c
[function]
[call site]
03954
strtol
[call site]
03955
isdigit_c
[function]
[call site]
03956
isspace_c
[function]
[call site]
03957
bam_aux_append
[function]
[call site]
03958
__assert_fail
[call site]
03959
realloc_bam_data
[function]
[call site]
03960
__errno_location
[call site]
03961
aux_parse
[function]
[call site]
03962
__errno_location
[call site]
03963
__errno_location
[call site]
03964
sam_passes_filter
[function]
[call site]
03965
hts_filter_eval2
[function]
[call site]
03966
ks_free
[function]
[call site]
03967
hts_filter_eval_
[function]
[call site]
03968
expression
[function]
[call site]
03969
and_expr
[function]
[call site]
03970
eq_expr
[function]
[call site]
03971
cmp_expr
[function]
[call site]
03972
bitor_expr
[function]
[call site]
03973
bitxor_expr
[function]
[call site]
03974
bitand_expr
[function]
[call site]
03975
add_expr
[function]
[call site]
03976
mul_expr
[function]
[call site]
03977
unary_expr
[function]
[call site]
03978
ws
[function]
[call site]
03979
simple_expr
[function]
[call site]
03980
ws
[function]
[call site]
03981
expression
[function]
[call site]
03982
ws
[function]
[call site]
03983
hts_str2dbl
[function]
[call site]
03984
__ctype_b_loc
[call site]
03985
strtod
[call site]
03986
ks_clear
[function]
[call site]
03987
func_expr
[function]
[call site]
03988
expression
[function]
[call site]
03989
expr_func_avg
[function]
[call site]
03990
expression
[function]
[call site]
03991
ws
[function]
[call site]
03992
hts_expr_val_existsT
[function]
[call site]
03993
hts_expr_val_exists
[function]
[call site]
03994
hts_expr_val_free
[function]
[call site]
03995
ks_free
[function]
[call site]
03996
strncmp
[call site]
03997
expression
[function]
[call site]
03998
hts_expr_val_existsT
[function]
[call site]
03999
expression
[function]
[call site]
04000
exp
[call site]
04001
hts_expr_val_undef
[function]
[call site]
04002
ks_clear
[function]
[call site]
04003
expression
[function]
[call site]
04004
expr_func_length
[function]
[call site]
04005
expression
[function]
[call site]
04006
log
[call site]
04007
hts_expr_val_undef
[function]
[call site]
04008
strncmp
[call site]
04009
expression
[function]
[call site]
04010
expr_func_min
[function]
[call site]
04011
strncmp
[call site]
04012
expression
[function]
[call site]
04013
expr_func_max
[function]
[call site]
04014
strncmp
[call site]
04015
expression
[function]
[call site]
04016
ws
[function]
[call site]
04017
hts_expr_val_exists
[function]
[call site]
04018
hts_expr_val_undef
[function]
[call site]
04019
hts_expr_val_free
[function]
[call site]
04020
hts_expr_val_free
[function]
[call site]
04021
hts_expr_val_undef
[function]
[call site]
04022
expression
[function]
[call site]
04023
sqrt
[call site]
04024
hts_expr_val_undef
[function]
[call site]
04025
ws
[function]
[call site]
04026
hts_expr_val_exists
[function]
[call site]
04027
hts_expr_val_undef
[function]
[call site]
04028
unary_expr
[function]
[call site]
04029
hts_expr_val_exists
[function]
[call site]
04030
unary_expr
[function]
[call site]
04031
hts_expr_val_exists
[function]
[call site]
04032
hts_expr_val_undef
[function]
[call site]
04033
hts_expr_val_exists
[function]
[call site]
04034
hts_expr_val_undef
[function]
[call site]
04035
simple_expr
[function]
[call site]
04036
ws
[function]
[call site]
04037
unary_expr
[function]
[call site]
04038
hts_expr_val_exists
[function]
[call site]
04039
hts_expr_val_undef
[function]
[call site]
04040
hts_expr_val_free
[function]
[call site]
04041
hts_expr_val_undef
[function]
[call site]
04042
hts_expr_val_exists
[function]
[call site]
04043
hts_expr_val_free
[function]
[call site]
04044
ws
[function]
[call site]
04045
mul_expr
[function]
[call site]
04046
hts_expr_val_exists
[function]
[call site]
04047
hts_expr_val_free
[function]
[call site]
04048
hts_expr_val_undef
[function]
[call site]
04049
hts_expr_val_free
[function]
[call site]
04050
ws
[function]
[call site]
04051
add_expr
[function]
[call site]
04052
hts_expr_val_exists
[function]
[call site]
04053
hts_expr_val_free
[function]
[call site]
04054
hts_expr_val_free
[function]
[call site]
04055
hts_expr_val_undef
[function]
[call site]
04056
ws
[function]
[call site]
04057
bitand_expr
[function]
[call site]
04058
hts_expr_val_exists
[function]
[call site]
04059
hts_expr_val_free
[function]
[call site]
04060
hts_expr_val_free
[function]
[call site]
04061
hts_expr_val_undef
[function]
[call site]
04062
ws
[function]
[call site]
04063
bitxor_expr
[function]
[call site]
04064
hts_expr_val_exists
[function]
[call site]
04065
hts_expr_val_free
[function]
[call site]
04066
hts_expr_val_free
[function]
[call site]
04067
hts_expr_val_undef
[function]
[call site]
04068
ws
[function]
[call site]
04069
cmp_expr
[function]
[call site]
04070
hts_expr_val_exists
[function]
[call site]
04071
hts_expr_val_undef
[function]
[call site]
04072
cmp_expr
[function]
[call site]
04073
hts_expr_val_exists
[function]
[call site]
04074
hts_expr_val_undef
[function]
[call site]
04075
strcmp
[call site]
04076
cmp_expr
[function]
[call site]
04077
hts_expr_val_exists
[function]
[call site]
04078
hts_expr_val_undef
[function]
[call site]
04079
cmp_expr
[function]
[call site]
04080
hts_expr_val_exists
[function]
[call site]
04081
hts_expr_val_undef
[function]
[call site]
04082
hts_expr_val_exists
[function]
[call site]
04083
hts_expr_val_undef
[function]
[call site]
04084
hts_expr_val_free
[function]
[call site]
04085
ws
[function]
[call site]
04086
eq_expr
[function]
[call site]
04087
hts_expr_val_exists
[function]
[call site]
04088
hts_expr_val_undef
[function]
[call site]
04089
strcmp
[call site]
04090
eq_expr
[function]
[call site]
04091
hts_expr_val_exists
[function]
[call site]
04092
hts_expr_val_undef
[function]
[call site]
04093
strcmp
[call site]
04094
eq_expr
[function]
[call site]
04095
hts_expr_val_free
[function]
[call site]
04096
fprintf
[call site]
04097
hts_expr_val_free
[function]
[call site]
04098
hts_expr_val_exists
[function]
[call site]
04099
hts_expr_val_undef
[function]
[call site]
04100
hts_expr_val_free
[function]
[call site]
04101
ws
[function]
[call site]
04102
eq_expr
[function]
[call site]
04103
hts_expr_val_existsT
[function]
[call site]
04104
hts_expr_val_undef
[function]
[call site]
04105
eq_expr
[function]
[call site]
04106
hts_expr_val_existsT
[function]
[call site]
04107
hts_expr_val_undef
[function]
[call site]
04108
hts_expr_val_existsT
[function]
[call site]
04109
hts_expr_val_undef
[function]
[call site]
04110
hts_expr_val_existsT
[function]
[call site]
04111
hts_expr_val_undef
[function]
[call site]
04112
hts_expr_val_free
[function]
[call site]
04113
ws
[function]
[call site]
04114
hts_expr_val_exists
[function]
[call site]
04115
bam_sym_lookup
[function]
[call site]
04116
ks_clear
[function]
[call site]
04117
kputw
[function]
[call site]
04118
kputc_
[function]
[call site]
04119
kputs
[function]
[call site]
04120
kputs
[function]
[call site]
04121
memcmp
[call site]
04122
bam_endpos
[function]
[call site]
04123
memcmp
[call site]
04124
memcmp
[call site]
04125
memcmp
[call site]
04126
memcmp
[call site]
04127
memcmp
[call site]
04128
memcmp
[call site]
04129
memcmp
[call site]
04130
memcmp
[call site]
04131
memcmp
[call site]
04132
memcmp
[call site]
04133
memcmp
[call site]
04134
memcmp
[call site]
04135
hts_log
[function]
[call site]
04136
memcmp
[call site]
04137
bam_get_library
[function]
[call site]
04138
bam_aux_get
[function]
[call site]
04139
sam_hdr_find_tag_id
[function]
[call site]
04140
ks_clear
[function]
[call site]
04141
memcmp
[call site]
04142
memcmp
[call site]
04143
sam_hdr_tid2name
[function]
[call site]
04144
ks_clear
[function]
[call site]
04145
memcmp
[call site]
04146
memcmp
[call site]
04147
memcmp
[call site]
04148
memcmp
[call site]
04149
bam_cigar2qlen
[function]
[call site]
04150
memcmp
[call site]
04151
ks_clear
[function]
[call site]
04152
memcmp
[call site]
04153
ks_clear
[function]
[call site]
04154
ks_resize
[function]
[call site]
04155
memcmp
[call site]
04156
bam_cigar2rlen
[function]
[call site]
04157
memcmp
[call site]
04158
sam_hdr_tid2name
[function]
[call site]
04159
ks_clear
[function]
[call site]
04160
sam_hdr_tid2name
[function]
[call site]
04161
ks_clear
[function]
[call site]
04162
memcmp
[call site]
04163
memcmp
[call site]
04164
ks_clear
[function]
[call site]
04165
ks_resize
[function]
[call site]
04166
nibble2base
[function]
[call site]
04167
memcmp
[call site]
04168
bam_aux_get
[function]
[call site]
04169
ks_clear
[function]
[call site]
04170
ks_clear
[function]
[call site]
04171
bam_aux2i
[function]
[call site]
04172
bam_aux2f
[function]
[call site]
04173
le_to_double
[function]
[call site]
04174
le_to_float
[function]
[call site]
04175
get_int_aux_val
[function]
[call site]
04176
hts_log
[function]
[call site]
04177
hts_log
[function]
[call site]
04178
hts_expr_val_free
[function]
[call site]
04179
hts_expr_val_free
[function]
[call site]
04180
sam_write1
[function]
[call site]
04181
bam_write_idx1
[function]
[call site]
04182
bam_write1
[function]
[call site]
04183
hts_log
[function]
[call site]
04184
__errno_location
[call site]
04185
hts_log
[function]
[call site]
04186
bgzf_flush_try
[function]
[call site]
04187
lazy_flush
[function]
[call site]
04188
ed_swap_4p
[function]
[call site]
04189
ed_swap_4p
[function]
[call site]
04190
bgzf_write
[function]
[call site]
04191
swap_data
[function]
[call site]
04192
bgzf_write
[function]
[call site]
04193
bgzf_write
[function]
[call site]
04194
bgzf_write
[function]
[call site]
04195
bgzf_write
[function]
[call site]
04196
bam_cigar2rlen
[function]
[call site]
04197
hts_log
[function]
[call site]
04198
u32_to_le
[function]
[call site]
04199
u32_to_le
[function]
[call site]
04200
bgzf_write
[function]
[call site]
04201
bgzf_write
[function]
[call site]
04202
bgzf_write
[function]
[call site]
04203
u32_to_le
[function]
[call site]
04204
bgzf_write
[function]
[call site]
04205
bgzf_write
[function]
[call site]
04206
swap_data
[function]
[call site]
04207
bgzf_flush_try
[function]
[call site]
04208
hts_idx_amend_last
[function]
[call site]
04209
bgzf_idx_amend_last
[function]
[call site]
04210
bam_write1
[function]
[call site]
04211
bam_endpos
[function]
[call site]
04212
bgzf_idx_push
[function]
[call site]
04213
hts_idx_push
[function]
[call site]
04214
hts_idx_check_range
[function]
[call site]
04215
hts_log
[function]
[call site]
04216
__errno_location
[call site]
04217
realloc
[call site]
04218
realloc
[call site]
04219
hts_log
[function]
[call site]
04220
hts_log
[function]
[call site]
04221
hts_log
[function]
[call site]
04222
kh_init_bin
[function]
[call site]
04223
calloc
[call site]
04224
insert_to_l
[function]
[call site]
04225
realloc
[call site]
04226
hts_reg2bin
[function]
[call site]
04227
insert_to_b
[function]
[call site]
04228
kh_put_bin
[function]
[call site]
04229
kh_del_bin
[function]
[call site]
04230
realloc
[call site]
04231
insert_to_b
[function]
[call site]
04232
insert_to_b
[function]
[call site]
04233
hts_idx_check_range
[function]
[call site]
04234
pthread_mutex_unlock
[call site]
04235
pthread_mutex_unlock
[call site]
04236
sam_hdr_tid2name
[function]
[call site]
04237
hts_log
[function]
[call site]
04238
cram_put_bam_seq
[function]
[call site]
04239
cram_new_container
[function]
[call site]
04240
pthread_mutex_lock
[call site]
04241
pthread_mutex_unlock
[call site]
04242
hts_log
[function]
[call site]
04243
pthread_mutex_lock
[call site]
04244
hts_log
[function]
[call site]
04245
pthread_mutex_unlock
[call site]
04246
cram_next_container
[function]
[call site]
04247
cram_update_curr_slice
[function]
[call site]
04248
hts_log
[function]
[call site]
04249
cram_flush_container_mt
[function]
[call site]
04250
cram_free_slice
[function]
[call site]
04251
cram_free_container
[function]
[call site]
04252
cram_new_container
[function]
[call site]
04253
cram_new_slice
[function]
[call site]
04254
calloc
[call site]
04255
calloc
[call site]
04256
cram_new_block
[function]
[call site]
04257
cram_new_block
[function]
[call site]
04258
cram_new_block
[function]
[call site]
04259
cram_new_block
[function]
[call site]
04260
cram_new_block
[function]
[call site]
04261
cram_new_block
[function]
[call site]
04262
string_pool_create
[function]
[call site]
04263
kh_init_m_s2i
[function]
[call site]
04264
kh_init_m_s2i
[function]
[call site]
04265
cram_free_slice
[function]
[call site]
04266
cram_free_container
[function]
[call site]
04267
pthread_mutex_lock
[call site]
04268
calloc
[call site]
04269
pthread_mutex_unlock
[call site]
04270
pthread_mutex_lock
[call site]
04271
calloc
[call site]
04272
pthread_mutex_unlock
[call site]
04273
pthread_mutex_lock
[call site]
04274
pthread_mutex_unlock
[call site]
04275
pthread_mutex_lock
[call site]
04276
calloc
[call site]
04277
pthread_mutex_unlock
[call site]
04278
pthread_mutex_unlock
[call site]
04279
bam_copy1
[function]
[call site]
04280
bam_dup1
[function]
[call site]
04281
bam_init1
[function]
[call site]
04282
bam_copy1
[function]
[call site]
04283
bam_destroy1
[function]
[call site]
04284
pthread_create
[call site]
04285
sam_dispatcher_write
[function]
[call site]
04286
hts_tpool_next_result_wait
[function]
[call site]
04287
hts_tpool_result_data
[function]
[call site]
04288
sam_state_err
[function]
[call site]
04289
bgzf_flush_try
[function]
[call site]
04290
bgzf_write
[function]
[call site]
04291
hwrite
[function]
[call site]
04292
bam_endpos
[function]
[call site]
04293
bgzf_idx_push
[function]
[call site]
04294
__errno_location
[call site]
04295
sam_state_err
[function]
[call site]
04296
sam_hdr_tid2name
[function]
[call site]
04297
hts_log
[function]
[call site]
04298
bam_endpos
[function]
[call site]
04299
hts_idx_push
[function]
[call site]
04300
__errno_location
[call site]
04301
sam_state_err
[function]
[call site]
04302
sam_hdr_tid2name
[function]
[call site]
04303
hts_log
[function]
[call site]
04304
__assert_fail
[call site]
04305
pthread_mutex_lock
[call site]
04306
bgzf_write
[function]
[call site]
04307
bgzf_flush_try
[function]
[call site]
04308
bgzf_write
[function]
[call site]
04309
hwrite
[function]
[call site]
04310
hts_tpool_delete_result
[function]
[call site]
04311
pthread_mutex_lock
[call site]
04312
pthread_mutex_unlock
[call site]
04313
sam_state_err
[function]
[call site]
04314
hts_tpool_process_shutdown
[function]
[call site]
04315
__errno_location
[call site]
04316
sam_state_err
[function]
[call site]
04317
hts_log
[function]
[call site]
04318
pthread_mutex_lock
[call site]
04319
pthread_mutex_unlock
[call site]
04320
pthread_mutex_unlock
[call site]
04321
calloc
[call site]
04322
calloc
[call site]
04323
bam_copy1
[function]
[call site]
04324
pthread_mutex_lock
[call site]
04325
pthread_mutex_unlock
[call site]
04326
hts_tpool_dispatch3
[function]
[call site]
04327
sam_format_worker
[function]
[call site]
04328
pthread_mutex_unlock
[call site]
04329
pthread_mutex_unlock
[call site]
04330
sam_format1
[function]
[call site]
04331
sam_format1_append
[function]
[call site]
04332
kputc
[function]
[call site]
04333
bgzf_flush_try
[function]
[call site]
04334
bgzf_write
[function]
[call site]
04335
hwrite
[function]
[call site]
04336
bam_endpos
[function]
[call site]
04337
bgzf_idx_push
[function]
[call site]
04338
sam_hdr_tid2name
[function]
[call site]
04339
hts_log
[function]
[call site]
04340
bam_endpos
[function]
[call site]
04341
hts_idx_push
[function]
[call site]
04342
sam_hdr_tid2name
[function]
[call site]
04343
hts_log
[function]
[call site]
04344
fastq_state_init
[function]
[call site]
04345
fastq_format1
[function]
[call site]
04346
kputc
[function]
[call site]
04347
kputs
[function]
[call site]
04348
kputs
[function]
[call site]
04349
bam_aux_get
[function]
[call site]
04350
ksprintf
[function]
[call site]
04351
isupper_c
[function]
[call site]
04352
hts_log
[function]
[call site]
04353
strlen
[call site]
04354
strlen
[call site]
04355
isalpha_c
[function]
[call site]
04356
islower_c
[function]
[call site]
04357
__ctype_b_loc
[call site]
04358
toupper_c
[function]
[call site]
04359
kh_get_tag
[function]
[call site]
04360
kputc_
[function]
[call site]
04361
sam_format_aux1
[function]
[call site]
04362
skip_aux
[function]
[call site]
04363
kputsn
[function]
[call site]
04364
ks_resize
[function]
[call site]
04365
kputc_
[function]
[call site]
04366
kputc_
[function]
[call site]
04367
kputc_
[function]
[call site]
04368
kputsn
[function]
[call site]
04369
kputc_
[function]
[call site]
04370
kputc_
[function]
[call site]
04371
kputc_
[function]
[call site]
04372
kputc
[function]
[call site]
04373
bgzf_flush_try
[function]
[call site]
04374
bgzf_write
[function]
[call site]
04375
hwrite
[function]
[call site]
04376
__errno_location
[call site]
04377
bam_destroy1
[function]
[call site]
04378
sam_hdr_destroy
[function]
[call site]
04379
hts_close_or_abort
[function]
[call site]
04380
view_vcf
[function]
[call site]
04381
hts_open
[function]
[call site]
04382
bcf_hdr_read
[function]
[call site]
04383
vcf_hdr_read
[function]
[call site]
04384
bcf_hdr_init
[function]
[call site]
04385
calloc
[call site]
04386
kh_init_vdict
[function]
[call site]
04387
calloc
[call site]
04388
bcf_hdr_append
[function]
[call site]
04389
bcf_hdr_parse_line
[function]
[call site]
04390
calloc
[call site]
04391
isalpha_c
[function]
[call site]
04392
isalnum_c
[function]
[call site]
04393
bcf_hrec_add_key
[function]
[call site]
04394
realloc
[call site]
04395
is_escaped
[function]
[call site]
04396
hts_strprint
[function]
[call site]
04397
hts_log
[function]
[call site]
04398
bcf_hrec_set_val
[function]
[call site]
04399
__errno_location
[call site]
04400
hts_log
[function]
[call site]
04401
isspace_c
[function]
[call site]
04402
hts_strprint
[function]
[call site]
04403
hts_log
[function]
[call site]
04404
bcf_hrec_destroy
[function]
[call site]
04405
hts_strprint
[function]
[call site]
04406
hts_log
[function]
[call site]
04407
bcf_hrec_destroy
[function]
[call site]
04408
bcf_hdr_add_hrec
[function]
[call site]
04409
bcf_hrec_check
[function]
[call site]
04410
bcf_hrec_set_type
[function]
[call site]
04411
strcmp
[call site]
04412
strcmp
[call site]
04413
bcf_hrec_find_key
[function]
[call site]
04414
strcasecmp
[call site]
04415
bcf_hrec_find_key
[function]
[call site]
04416
bcf_hrec_find_key
[function]
[call site]
04417
hts_log
[function]
[call site]
04418
hts_log
[function]
[call site]
04419
hts_log
[function]
[call site]
04420
bcf_hdr_register_hrec
[function]
[call site]
04421
bcf_hrec_set_type
[function]
[call site]
04422
bcf_hrec_find_key
[function]
[call site]
04423
strtoll
[call site]
04424
bcf_hrec_find_key
[function]
[call site]
04425
strdup
[call site]
04426
kh_get_vdict
[function]
[call site]
04427
__ac_X31_hash_string
[function]
[call site]
04428
kh_put_vdict
[function]
[call site]
04429
kh_resize_vdict
[function]
[call site]
04430
bcf_hrec_find_key
[function]
[call site]
04431
strtol
[call site]
04432
kh_del_vdict
[function]
[call site]
04433
bcf_hdr_set_idx
[function]
[call site]
04434
hts_log
[function]
[call site]
04435
__errno_location
[call site]
04436
hts_resize_array_
[function]
[call site]
04437
hts_log
[function]
[call site]
04438
__errno_location
[call site]
04439
realloc
[call site]
04440
__errno_location
[call site]
04441
__errno_location
[call site]
04442
hts_log
[function]
[call site]
04443
__errno_location
[call site]
04444
abort
[call site]
04445
abort
[call site]
04446
kh_del_vdict
[function]
[call site]
04447
hrec_add_idx
[function]
[call site]
04448
realloc
[call site]
04449
realloc
[call site]
04450
strdup
[call site]
04451
kputw
[function]
[call site]
04452
strtol
[call site]
04453
strcmp
[call site]
04454
strcmp
[call site]
04455
strcmp
[call site]
04456
strcmp
[call site]
04457
hts_log
[function]
[call site]
04458
strcmp
[call site]
04459
strcmp
[call site]
04460
__isoc99_sscanf
[call site]
04461
hts_log
[function]
[call site]
04462
hts_log
[function]
[call site]
04463
hts_log
[function]
[call site]
04464
strdup
[call site]
04465
kh_get_vdict
[function]
[call site]
04466
hrec_add_idx
[function]
[call site]
04467
kh_put_vdict
[function]
[call site]
04468
bcf_hdr_set_idx
[function]
[call site]
04469
kh_del_vdict
[function]
[call site]
04470
hrec_add_idx
[function]
[call site]
04471
bcf_hrec_destroy
[function]
[call site]
04472
strcmp
[call site]
04473
strcmp
[call site]
04474
bcf_hrec_destroy
[function]
[call site]
04475
realloc
[call site]
04476
bcf_hdr_append
[function]
[call site]
04477
kh_destroy_vdict
[function]
[call site]
04478
hts_log
[function]
[call site]
04479
hts_getline
[function]
[call site]
04480
hts_log
[function]
[call site]
04481
hopen
[function]
[call site]
04482
hts_log
[function]
[call site]
04483
kgetline
[function]
[call site]
04484
hgets
[function]
[call site]
04485
strchr
[call site]
04486
kputs
[function]
[call site]
04487
kputsn
[function]
[call site]
04488
kputs
[function]
[call site]
04489
atol
[call site]
04490
kputl
[function]
[call site]
04491
kputll
[function]
[call site]
04492
kputsn
[function]
[call site]
04493
hclose
[function]
[call site]
04494
hts_log
[function]
[call site]
04495
kputsn
[function]
[call site]
04496
kputc
[function]
[call site]
04497
bcf_hdr_parse
[function]
[call site]
04498
bcf_hdr_parse_line
[function]
[call site]
04499
hts_log
[function]
[call site]
04500
bcf_hdr_add_hrec
[function]
[call site]
04501
bcf_hrec_destroy
[function]
[call site]
04502
bcf_hdr_parse_line
[function]
[call site]
04503
bcf_hdr_add_hrec
[function]
[call site]
04504
bcf_hrec_destroy
[function]
[call site]
04505
bcf_hdr_parse_line
[function]
[call site]
04506
bcf_hdr_add_hrec
[function]
[call site]
04507
bcf_hrec_destroy
[function]
[call site]
04508
strchr
[call site]
04509
hts_strprint
[function]
[call site]
04510
hts_log
[function]
[call site]
04511
hts_log
[function]
[call site]
04512
bcf_hdr_parse_sample_line
[function]
[call site]
04513
strlen
[call site]
04514
hts_log
[function]
[call site]
04515
hts_log
[function]
[call site]
04516
bcf_hdr_add_sample_len
[function]
[call site]
04517
isspace_c
[function]
[call site]
04518
hts_log
[function]
[call site]
04519
realloc
[call site]
04520
kh_put_vdict
[function]
[call site]
04521
hts_log
[function]
[call site]
04522
bcf_hdr_sync
[function]
[call site]
04523
bcf_hdr_check_sanity
[function]
[call site]
04524
bcf_hdr_id2int
[function]
[call site]
04525
kh_get_vdict
[function]
[call site]
04526
hts_log
[function]
[call site]
04527
bcf_hdr_id2int
[function]
[call site]
04528
hts_log
[function]
[call site]
04529
tbx_index_load3
[function]
[call site]
04530
index_load
[function]
[call site]
04531
hts_idx_get_meta
[function]
[call site]
04532
le_to_i32
[function]
[call site]
04533
le_to_i32
[function]
[call site]
04534
le_to_i32
[function]
[call site]
04535
le_to_i32
[function]
[call site]
04536
le_to_i32
[function]
[call site]
04537
le_to_i32
[function]
[call site]
04538
le_to_u32
[function]
[call site]
04539
get_tid
[function]
[call site]
04540
kh_init_s2i
[function]
[call site]
04541
kh_put_s2i
[function]
[call site]
04542
strdup
[call site]
04543
kh_get_s2i
[function]
[call site]
04544
__errno_location
[call site]
04545
hts_log
[function]
[call site]
04546
hts_log
[function]
[call site]
04547
tbx_destroy
[function]
[call site]
04548
hts_idx_destroy
[function]
[call site]
04549
kh_destroy_s2i
[function]
[call site]
04550
tbx_seqnames
[function]
[call site]
04551
calloc
[call site]
04552
calloc
[call site]
04553
__assert_fail
[call site]
04554
__assert_fail
[call site]
04555
bcf_hdr_get_hrec
[function]
[call site]
04556
strcmp
[call site]
04557
bcf_hrec_find_key
[function]
[call site]
04558
strcmp
[call site]
04559
kh_get_vdict
[function]
[call site]
04560
add_missing_contig_hrec
[function]
[call site]
04561
strdup
[call site]
04562
bcf_hrec_add_key
[function]
[call site]
04563
strlen
[call site]
04564
bcf_hrec_set_val
[function]
[call site]
04565
bcf_hdr_add_hrec
[function]
[call site]
04566
__errno_location
[call site]
04567
__errno_location
[call site]
04568
hts_log
[function]
[call site]
04569
bcf_hrec_destroy
[function]
[call site]
04570
__errno_location
[call site]
04571
bcf_hdr_sync
[function]
[call site]
04572
tbx_destroy
[function]
[call site]
04573
tbx_destroy
[function]
[call site]
04574
bcf_hdr_destroy
[function]
[call site]
04575
kh_destroy_vdict
[function]
[call site]
04576
bcf_hrec_destroy
[function]
[call site]
04577
bcf_hdr_init
[function]
[call site]
04578
hts_log
[function]
[call site]
04579
bgzf_read
[function]
[call site]
04580
hts_log
[function]
[call site]
04581
bcf_hdr_destroy
[function]
[call site]
04582
strncmp
[call site]
04583
strncmp
[call site]
04584
hts_log
[function]
[call site]
04585
hts_log
[function]
[call site]
04586
bcf_hdr_destroy
[function]
[call site]
04587
bgzf_read
[function]
[call site]
04588
__errno_location
[call site]
04589
bgzf_read
[function]
[call site]
04590
bcf_hdr_parse
[function]
[call site]
04591
hts_log
[function]
[call site]
04592
bcf_hdr_destroy
[function]
[call site]
04593
hts_close_or_abort
[function]
[call site]
04594
bcf_hdr_write
[function]
[call site]
04595
__errno_location
[call site]
04596
bcf_hdr_sync
[function]
[call site]
04597
vcf_hdr_write
[function]
[call site]
04598
bcf_hdr_format
[function]
[call site]
04599
_bcf_hrec_format
[function]
[call site]
04600
ksprintf
[function]
[call site]
04601
strcmp
[call site]
04602
kputc
[function]
[call site]
04603
ksprintf
[function]
[call site]
04604
ksprintf
[function]
[call site]
04605
ksprintf
[function]
[call site]
04606
ksprintf
[function]
[call site]
04607
ksprintf
[function]
[call site]
04608
ksprintf
[function]
[call site]
04609
ksprintf
[function]
[call site]
04610
bgzf_write
[function]
[call site]
04611
bgzf_flush
[function]
[call site]
04612
hwrite
[function]
[call site]
04613
bcf_hdr_format
[function]
[call site]
04614
kputc
[function]
[call site]
04615
bgzf_write
[function]
[call site]
04616
u32_to_le
[function]
[call site]
04617
bgzf_write
[function]
[call site]
04618
bgzf_write
[function]
[call site]
04619
bcf_hdr_destroy
[function]
[call site]
04620
hts_close_or_abort
[function]
[call site]
04621
bcf_init
[function]
[call site]
04622
calloc
[call site]
04623
bcf_hdr_destroy
[function]
[call site]
04624
hts_close_or_abort
[function]
[call site]
04625
bcf_read
[function]
[call site]
04626
vcf_read
[function]
[call site]
04627
hts_getline
[function]
[call site]
04628
vcf_parse
[function]
[call site]
04629
bcf_clear
[function]
[call site]
04630
bcf_float_set
[function]
[call site]
04631
kstrtok
[function]
[call site]
04632
kh_get_vdict
[function]
[call site]
04633
hts_log
[function]
[call site]
04634
fix_chromosome
[function]
[call site]
04635
ksprintf
[function]
[call site]
04636
bcf_hdr_parse_line
[function]
[call site]
04637
bcf_hdr_add_hrec
[function]
[call site]
04638
bcf_hrec_destroy
[function]
[call site]
04639
bcf_hdr_sync
[function]
[call site]
04640
kh_get_vdict
[function]
[call site]
04641
hts_log
[function]
[call site]
04642
hts_str2uint
[function]
[call site]
04643
hts_log
[function]
[call site]
04644
strcmp
[call site]
04645
bcf_enc_vchar
[function]
[call site]
04646
bcf_enc_size
[function]
[call site]
04647
kputc
[function]
[call site]
04648
kputc
[function]
[call site]
04649
kputsn
[function]
[call site]
04650
i16_to_le
[function]
[call site]
04651
kputc
[function]
[call site]
04652
kputc
[function]
[call site]
04653
kputc
[function]
[call site]
04654
kputsn
[function]
[call site]
04655
bcf_enc_size
[function]
[call site]
04656
bcf_enc_vchar
[function]
[call site]
04657
strcmp
[call site]
04658
bcf_seqname_safe
[function]
[call site]
04659
bcf_seqname
[function]
[call site]
04660
bcf_hdr_id2name
[function]
[call site]
04661
hts_log
[function]
[call site]
04662
bcf_enc_vchar
[function]
[call site]
04663
bcf_float_set
[function]
[call site]
04664
strcmp
[call site]
04665
vcf_parse_filter
[function]
[call site]
04666
bcf_seqname_safe
[function]
[call site]
04667
hts_log
[function]
[call site]
04668
kstrtok
[function]
[call site]
04669
kh_get_vdict
[function]
[call site]
04670
hts_log
[function]
[call site]
04671
ksprintf
[function]
[call site]
04672
bcf_hdr_parse_line
[function]
[call site]
04673
bcf_hdr_add_hrec
[function]
[call site]
04674
bcf_hrec_destroy
[function]
[call site]
04675
bcf_hdr_sync
[function]
[call site]
04676
kh_get_vdict
[function]
[call site]
04677
bcf_seqname_safe
[function]
[call site]
04678
hts_log
[function]
[call site]
04679
bcf_enc_vint
[function]
[call site]
04680
bcf_enc_size
[function]
[call site]
04681
bcf_enc_int1
[function]
[call site]
04682
bcf_enc_size
[function]
[call site]
04683
kputc
[function]
[call site]
04684
bcf_enc_size
[function]
[call site]
04685
kputc
[function]
[call site]
04686
bcf_enc_size
[function]
[call site]
04687
kputc
[function]
[call site]
04688
i16_to_le
[function]
[call site]
04689
bcf_enc_size
[function]
[call site]
04690
kputsn
[function]
[call site]
04691
i32_to_le
[function]
[call site]
04692
bcf_enc_size
[function]
[call site]
04693
kputsn
[function]
[call site]
04694
bcf_enc_size
[function]
[call site]
04695
kputc
[function]
[call site]
04696
kputc
[function]
[call site]
04697
kputc
[function]
[call site]
04698
bcf_enc_size
[function]
[call site]
04699
ks_resize
[function]
[call site]
04700
i16_to_le
[function]
[call site]
04701
bcf_enc_size
[function]
[call site]
04702
ks_resize
[function]
[call site]
04703
i32_to_le
[function]
[call site]
04704
bcf_enc_vint
[function]
[call site]
04705
strcmp
[call site]
04706
vcf_parse_info
[function]
[call site]
04707
bcf_seqname_safe
[function]
[call site]
04708
hts_log
[function]
[call site]
04709
kh_get_vdict
[function]
[call site]
04710
hts_log
[function]
[call site]
04711
ksprintf
[function]
[call site]
04712
bcf_hdr_parse_line
[function]
[call site]
04713
bcf_hdr_add_hrec
[function]
[call site]
04714
bcf_hrec_destroy
[function]
[call site]
04715
bcf_hdr_sync
[function]
[call site]
04716
kh_get_vdict
[function]
[call site]
04717
bcf_seqname_safe
[function]
[call site]
04718
hts_log
[function]
[call site]
04719
bcf_enc_int1
[function]
[call site]
04720
bcf_enc_size
[function]
[call site]
04721
bcf_enc_vchar
[function]
[call site]
04722
realloc
[call site]
04723
bcf_seqname_safe
[function]
[call site]
04724
hts_log
[function]
[call site]
04725
hts_str2int
[function]
[call site]
04726
bcf_seqname_safe
[function]
[call site]
04727
hts_log
[function]
[call site]
04728
bcf_enc_int1
[function]
[call site]
04729
bcf_enc_vint
[function]
[call site]
04730
bcf_seqname_safe
[function]
[call site]
04731
hts_log
[function]
[call site]
04732
hts_str2dbl
[function]
[call site]
04733
bcf_float_set
[function]
[call site]
04734
bcf_enc_vfloat
[function]
[call site]
04735
__assert_fail
[call site]
04736
bcf_enc_size
[function]
[call site]
04737
serialize_float_array
[function]
[call site]
04738
ks_resize
[function]
[call site]
04739
float_to_le
[function]
[call site]
04740
vcf_parse_format
[function]
[call site]
04741
bcf_seqname_safe
[function]
[call site]
04742
hts_log
[function]
[call site]
04743
kstrtok
[function]
[call site]
04744
bcf_seqname_safe
[function]
[call site]
04745
hts_log
[function]
[call site]
04746
kh_get_vdict
[function]
[call site]
04747
bcf_seqname_safe
[function]
[call site]
04748
hts_log
[function]
[call site]
04749
bcf_seqname_safe
[function]
[call site]
04750
hts_log
[function]
[call site]
04751
ksprintf
[function]
[call site]
04752
bcf_hdr_parse_line
[function]
[call site]
04753
bcf_hdr_add_hrec
[function]
[call site]
04754
bcf_hrec_destroy
[function]
[call site]
04755
bcf_hdr_sync
[function]
[call site]
04756
kh_get_vdict
[function]
[call site]
04757
bcf_seqname_safe
[function]
[call site]
04758
hts_log
[function]
[call site]
04759
strcmp
[call site]
04760
hts_log
[function]
[call site]
04761
bcf_seqname_safe
[function]
[call site]
04762
hts_log
[function]
[call site]
04763
align_mem
[function]
[call site]
04764
kputsn
[function]
[call site]
04765
bcf_seqname_safe
[function]
[call site]
04766
hts_log
[function]
[call site]
04767
bcf_seqname_safe
[function]
[call site]
04768
hts_log
[function]
[call site]
04769
ks_resize
[function]
[call site]
04770
bcf_seqname_safe
[function]
[call site]
04771
bcf_seqname_safe
[function]
[call site]
04772
hts_log
[function]
[call site]
04773
hts_str2uint
[function]
[call site]
04774
bcf_seqname_safe
[function]
[call site]
04775
hts_log
[function]
[call site]
04776
bcf_seqname_safe
[function]
[call site]
04777
hts_log
[function]
[call site]
04778
hts_str2int
[function]
[call site]
04779
bcf_seqname_safe
[function]
[call site]
04780
hts_log
[function]
[call site]
04781
isdigit_c
[function]
[call site]
04782
bcf_float_set
[function]
[call site]
04783
bcf_seqname
[function]
[call site]
04784
bcf_float_set
[function]
[call site]
04785
bcf_float_set
[function]
[call site]
04786
bcf_seqname_safe
[function]
[call site]
04787
hts_log
[function]
[call site]
04788
hts_strprint
[function]
[call site]
04789
bcf_seqname_safe
[function]
[call site]
04790
hts_log
[function]
[call site]
04791
bcf_float_set
[function]
[call site]
04792
bcf_float_set
[function]
[call site]
04793
bcf_enc_int1
[function]
[call site]
04794
bcf_enc_size
[function]
[call site]
04795
kputsn
[function]
[call site]
04796
bcf_enc_vint
[function]
[call site]
04797
bcf_enc_size
[function]
[call site]
04798
serialize_float_array
[function]
[call site]
04799
bcf_seqname_safe
[function]
[call site]
04800
hts_log
[function]
[call site]
04801
bcf_seqname_safe
[function]
[call site]
04802
hts_log
[function]
[call site]
04803
bcf_seqname_safe
[function]
[call site]
04804
hts_log
[function]
[call site]
04805
bcf_read1_core
[function]
[call site]
04806
bgzf_read
[function]
[call site]
04807
bcf_clear
[function]
[call site]
04808
le_to_u32
[function]
[call site]
04809
le_to_u32
[function]
[call site]
04810
ks_resize
[function]
[call site]
04811
le_to_i32
[function]
[call site]
04812
le_to_u32
[function]
[call site]
04813
le_to_i32
[function]
[call site]
04814
le_to_float
[function]
[call site]
04815
le_to_u16
[function]
[call site]
04816
le_to_u16
[function]
[call site]
04817
le_to_u32
[function]
[call site]
04818
bgzf_read
[function]
[call site]
04819
bgzf_read
[function]
[call site]
04820
bcf_record_check
[function]
[call site]
04821
hts_log
[function]
[call site]
04822
bcf_dec_size_safe
[function]
[call site]
04823
bcf_dec_typed_int1_safe
[function]
[call site]
04824
le_to_i16
[function]
[call site]
04825
le_to_i32
[function]
[call site]
04826
bcf_seqname_safe
[function]
[call site]
04827
get_type_name
[function]
[call site]
04828
hts_log
[function]
[call site]
04829
bcf_seqname_safe
[function]
[call site]
04830
hts_log
[function]
[call site]
04831
bcf_dec_size_safe
[function]
[call site]
04832
get_type_name
[function]
[call site]
04833
hts_log
[function]
[call site]
04834
bcf_dec_size_safe
[function]
[call site]
04835
bcf_seqname_safe
[function]
[call site]
04836
get_type_name
[function]
[call site]
04837
hts_log
[function]
[call site]
04838
bcf_dec_int1
[function]
[call site]
04839
le_to_i8
[function]
[call site]
04840
le_to_i16
[function]
[call site]
04841
le_to_i32
[function]
[call site]
04842
bcf_seqname_safe
[function]
[call site]
04843
hts_log
[function]
[call site]
04844
bcf_dec_typed_int1_safe
[function]
[call site]
04845
bcf_seqname_safe
[function]
[call site]
04846
hts_log
[function]
[call site]
04847
bcf_dec_size_safe
[function]
[call site]
04848
bcf_seqname_safe
[function]
[call site]
04849
get_type_name
[function]
[call site]
04850
hts_log
[function]
[call site]
04851
bcf_dec_typed_int1_safe
[function]
[call site]
04852
bcf_record_check_err
[function]
[call site]
04853
bcf_seqname_safe
[function]
[call site]
04854
bcf_dec_size_safe
[function]
[call site]
04855
bcf_record_check_err
[function]
[call site]
04856
bcf_seqname_safe
[function]
[call site]
04857
hts_log
[function]
[call site]
04858
bcf_seqname_safe
[function]
[call site]
04859
hts_log
[function]
[call site]
04860
bcf_seqname_safe
[function]
[call site]
04861
hts_log
[function]
[call site]
04862
bcf_subset_format
[function]
[call site]
04863
hts_realloc_or_die
[function]
[call site]
04864
bcf_unpack_fmt_core1
[function]
[call site]
04865
bcf_dec_typed_int1
[function]
[call site]
04866
bcf_dec_int1
[function]
[call site]
04867
bcf_dec_size
[function]
[call site]
04868
bcf_dec_typed_int1
[function]
[call site]
04869
bcf_write
[function]
[call site]
04870
bcf_hdr_sync
[function]
[call site]
04871
bcf_seqname_safe
[function]
[call site]
04872
vcf_write
[function]
[call site]
04873
vcf_format
[function]
[call site]
04874
bcf_seqname
[function]
[call site]
04875
hts_log
[function]
[call site]
04876
__errno_location
[call site]
04877
bcf_unpack
[function]
[call site]
04878
bcf_fmt_sized_array
[function]
[call site]
04879
bcf_dec_size
[function]
[call site]
04880
bcf_fmt_array
[function]
[call site]
04881
kputc
[function]
[call site]
04882
kputc
[function]
[call site]
04883
kputc
[function]
[call site]
04884
le_to_i8
[function]
[call site]
04885
kputc
[function]
[call site]
04886
le_to_i16
[function]
[call site]
04887
kputc
[function]
[call site]
04888
le_to_i32
[function]
[call site]
04889
kputc
[function]
[call site]
04890
le_to_u32
[function]
[call site]
04891
kputc
[function]
[call site]
04892
kputd
[function]
[call site]
04893
hts_log
[function]
[call site]
04894
kputc
[function]
[call site]
04895
hts_realloc_or_die
[function]
[call site]
04896
bcf_fmt_sized_array
[function]
[call site]
04897
kputc
[function]
[call site]
04898
bcf_dec_size
[function]
[call site]
04899
hts_realloc_or_die
[function]
[call site]
04900
bcf_dec_int1
[function]
[call site]
04901
hts_realloc_or_die
[function]
[call site]
04902
bcf_unpack_info_core1
[function]
[call site]
04903
bcf_dec_typed_int1
[function]
[call site]
04904
bcf_dec_size
[function]
[call site]
04905
le_to_i32
[function]
[call site]
04906
le_to_float
[function]
[call site]
04907
le_to_i16
[function]
[call site]
04908
le_to_i64
[function]
[call site]
04909
le_to_u64
[function]
[call site]
04910
hts_realloc_or_die
[function]
[call site]
04911
bcf_unpack_fmt_core1
[function]
[call site]
04912
kputs
[function]
[call site]
04913
kputc
[function]
[call site]
04914
kputc
[function]
[call site]
04915
kputc
[function]
[call site]
04916
kputs
[function]
[call site]
04917
kputc
[function]
[call site]
04918
kputc
[function]
[call site]
04919
kputc
[function]
[call site]
04920
kputs
[function]
[call site]
04921
kputc
[function]
[call site]
04922
kputc
[function]
[call site]
04923
bcf_float_is_missing
[function]
[call site]
04924
kputc
[function]
[call site]
04925
kputd
[function]
[call site]
04926
kputc
[function]
[call site]
04927
bcf_seqname_safe
[function]
[call site]
04928
hts_log
[function]
[call site]
04929
__errno_location
[call site]
04930
kputc
[function]
[call site]
04931
kputs
[function]
[call site]
04932
kputc
[function]
[call site]
04933
kputc
[function]
[call site]
04934
kputc
[function]
[call site]
04935
bcf_seqname_safe
[function]
[call site]
04936
hts_log
[function]
[call site]
04937
__errno_location
[call site]
04938
kputs
[function]
[call site]
04939
kputc
[function]
[call site]
04940
kputc
[function]
[call site]
04941
kputc
[function]
[call site]
04942
kputc
[function]
[call site]
04943
kputc
[function]
[call site]
04944
bcf_float_is_missing
[function]
[call site]
04945
kputc
[function]
[call site]
04946
kputd
[function]
[call site]
04947
kputc
[function]
[call site]
04948
bcf_seqname_safe
[function]
[call site]
04949
hts_log
[function]
[call site]
04950
__errno_location
[call site]
04951
bcf_fmt_array
[function]
[call site]
04952
kputc
[function]
[call site]
04953
kputc
[function]
[call site]
04954
kputc
[function]
[call site]
04955
bcf_seqname_safe
[function]
[call site]
04956
hts_log
[function]
[call site]
04957
__errno_location
[call site]
04958
kputs
[function]
[call site]
04959
strcmp
[call site]
04960
kputs
[function]
[call site]
04961
kputc
[function]
[call site]
04962
kputc
[function]
[call site]
04963
bcf_format_gt
[function]
[call site]
04964
le_to_i8
[function]
[call site]
04965
kputc
[function]
[call site]
04966
le_to_i16
[function]
[call site]
04967
kputc
[function]
[call site]
04968
le_to_i32
[function]
[call site]
04969
hts_log
[function]
[call site]
04970
bcf_fmt_array
[function]
[call site]
04971
kputc
[function]
[call site]
04972
kputs
[function]
[call site]
04973
kputc
[function]
[call site]
04974
bgzf_flush_try
[function]
[call site]
04975
bgzf_write
[function]
[call site]
04976
hwrite
[function]
[call site]
04977
bcf_seqname_safe
[function]
[call site]
04978
hts_idx_tbi_name
[function]
[call site]
04979
strlen
[call site]
04980
realloc
[call site]
04981
strcpy
[call site]
04982
le_to_u32
[function]
[call site]
04983
hts_idx_push
[function]
[call site]
04984
bcf_strerror
[function]
[call site]
04985
add_desc_to_buffer
[function]
[call site]
04986
add_desc_to_buffer
[function]
[call site]
04990
bcf_seqname_safe
[function]
[call site]
04991
hts_log
[function]
[call site]
04992
bcf1_sync
[function]
[call site]
04993
bcf1_sync_id
[function]
[call site]
04994
strcmp
[call site]
04995
strlen
[call site]
04996
bcf_enc_vchar
[function]
[call site]
04997
bcf_enc_size
[function]
[call site]
04998
bcf1_sync_alleles
[function]
[call site]
04999
bcf1_sync_filter
[function]
[call site]
05003
bcf_enc_vint
[function]
[call site]
05004
bcf_enc_vint
[function]
[call site]
05005
bcf1_sync_info
[function]
[call site]
05006
kputsn_
[function]
[call site]
05007
bcf_unpack
[function]
[call site]
05008
bcf1_sync_id
[function]
[call site]
05009
kputsn_
[function]
[call site]
05010
bcf1_sync_alleles
[function]
[call site]
05011
kputsn_
[function]
[call site]
05012
strlen
[call site]
05013
bcf1_sync_filter
[function]
[call site]
05014
kputsn_
[function]
[call site]
05015
bcf_enc_vint
[function]
[call site]
05016
bcf1_sync_info
[function]
[call site]
05017
kputsn_
[function]
[call site]
05018
kputsn_
[function]
[call site]
05019
bcf_seqname_safe
[function]
[call site]
05020
hts_log
[function]
[call site]
05021
u32_to_le
[function]
[call site]
05022
u32_to_le
[function]
[call site]
05023
i32_to_le
[function]
[call site]
05024
u32_to_le
[function]
[call site]
05025
u32_to_le
[function]
[call site]
05026
float_to_le
[function]
[call site]
05027
u16_to_le
[function]
[call site]
05028
u16_to_le
[function]
[call site]
05029
u32_to_le
[function]
[call site]
05030
bgzf_write
[function]
[call site]
05031
bgzf_write
[function]
[call site]
05032
bgzf_write
[function]
[call site]
05033
bcf_destroy
[function]
[call site]
05034
bcf_empty
[function]
[call site]
05035
bcf_clear
[function]
[call site]
05036
bcf_hdr_destroy
[function]
[call site]
05037
hts_close_or_abort
[function]
[call site]
05038